 
####################################################### 
#                                                     # 
#                        ACE                          # 
#                                                     # 
#        Ab-initio protein structure prediction       # 
#                         &                           # 
#               Comparative modeling                  # 
#                                                     # 
#                     Evaluator                       # 
#                                                     # 
#                ----------------- 11/1998            # 
#                                                     # 
#                         by                          # 
#           Adam Zemla & Ceslovas Venclovas           # 
#                                                     # 
#         Protein Structure Prediction Center         # 
#      Lawrence Livermore National Laboratory, CA     # 
#                                                     # 
####################################################### 
########################## 
#                        # 
#    ACE parameters:     # 
#                        # 
########################## 
# 
# MEASURES: 
# 
# For AB: 0 3 9 13 14 
# For CM: 0 1 2 3 6 7 8 9 10 11 12 13 14 18 
# 
ARMSMC  0 1 2     7 8 9    11 12 13 14 18 
ARMSSC  0 1 2 3 6 7 8 9    11 12 13 14 18 
# 
CRMSCA  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSMC  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSSC  0 1 2 3 6     9    11 12 13 14 18 
CRMSALL 0 1 2     7 8 9    11 12 13 14 18 
# 
D-E_CA  0 1 2     7 8 9    11 12 13 14 18 
D-E_MC  0 1 2     7 8 9    11 12 13 14 18 
D-E_SC  0 1 2 3 6 7 8 9    11 12 13 14 18 
D-E_ALL 0 1 2     7 8 9    11 12 13 14 18 
# 
# Output parameters 
# 
DIHED-OUTPUT        0         #    1 - ON, 0 - OFF 
RES-CONTACTS        0         #    1 - ON, 0 - OFF 
SS-OUTPUT           1         #    1 - ON, 0 - OFF 
PHI-PSI             0         #    1 - SEPARATELY, 0 - NO  
# 
# Calculation parameters 
# 
SOV-METHOD          1         #    0 - SOV 94,  1 - SOV 
# 
TEMP-FACTOR         30.0      #    Target structure temperature factor cutoff 
ACCESS-CUTOFF       0.20      #    Solvent accessibility cutoff   
ANGLES-CORRECT      30.0      #    target-model  (diff < 30.0)    
DSSP-HELIX          6         #    Secondary Structure subset: helix cutoff  
DSSP-STRAND         3         #    Secondary Structure subset: strand cutoff 
ROTAMERS-LIMIT      30.0      #    target-parent (diff > 30.0) 
ROTATION-MATRIX     0         #    1 - ON, 0 - OFF   
SC-SWAPPING         1         #    1 - ON, 0 - OFF    
SEP-CONTACTS        1         #    Separation interval along the chain 
RESIDUE-CONTACTS    8.0       #    Contact definition between two C-beta atoms 
# 
CRMS-METHOD         1         #    0 - ALL, 1 - CA, 2 - MC+CB, 3 - CA (iter)  
ITER-CUTOFF         2.5       #    DISTANCE cutoff (for CA (iter))  
LCS_GDT             1         #    LCS and GDT calculations (1 - ON, 0 - OFF) 
########################## 
#                        # 
#      ACE results:      # 
#                        # 
########################## 
 
 
 
# WARNING! The number of residues in SS section: 90 , MODEL 90 , TARGET 103 
#          The number of residues possible to evaluate: 90 
 
 
 SECONDARY STRUCTURE PREDICTION: 
       NUM    RES   SS   Prediction   Probability 
 SSP     1     M     C     C             1.00 
 SSP     2     I     C     H             1.00 
 SSP     3     G     H     H             1.00 
 SSP     4     Q     H     H             1.00 
 SSP     5     R     H     H             1.00 
 SSP     6     I     H     H             1.00 
 SSP     7     K     H     H             1.00 
 SSP     8     Q     H     H             1.00 
 SSP     9     Y     H     H             1.00 
 SSP    10     R     H     H             1.00 
 SSP    11     K     H     H             1.00 
 SSP    12     E     H     H             1.00 
 SSP    13     K     C     H             1.00 
 SSP    14     G     C     C             1.00 
 SSP    15     Y     C     C             1.00 
 SSP    16     S     C     C             1.00 
 SSP    17     L     H     H             1.00 
 SSP    18     S     H     H             1.00 
 SSP    19     E     H     H             1.00 
 SSP    20     L     H     H             1.00 
 SSP    21     A     H     H             1.00 
 SSP    22     E     H     H             1.00 
 SSP    23     K     H     H             1.00 
 SSP    24     A     H     H             1.00 
 SSP    25     G     C     C             1.00 
 SSP    26     V     C     C             1.00 
 SSP    27     A     C     C             1.00 
 SSP    28     K     H     H             1.00 
 SSP    29     S     H     H             1.00 
 SSP    30     Y     H     H             1.00 
 SSP    31     L     H     H             1.00 
 SSP    32     S     H     H             1.00 
 SSP    33     S     H     H             1.00 
 SSP    34     I     H     H             1.00 
 SSP    35     E     H     H             1.00 
 SSP    36     R     C     C             1.00 
 SSP    37     N     C     C             1.00 
 SSP    38     L     C     C             1.00 
 SSP    39     Q     C     C             1.00 
 SSP    40     T     C     C             1.00 
 SSP    41     N     C     C             1.00 
 SSP    42     P     C     C             1.00 
 SSP  BREAK 
 SSP    45     Q     H     C             1.00 
 SSP    46     F     H     C             1.00 
 SSP    47     L     H     H             1.00 
 SSP    48     E     H     H             1.00 
 SSP    49     K     H     H             1.00 
 SSP    50     V     H     H             1.00 
 SSP    51     S     H     H             1.00 
 SSP    52     A     H     H             1.00 
 SSP    53     V     H     H             1.00 
 SSP    54     L     H     H             1.00 
 SSP    55     D     C     C             1.00 
 SSP    56     V     C     C             1.00 
 SSP    57     S     C     C             1.00 
 SSP    58     V     H     H             1.00 
 SSP    59     H     H     H             1.00 
 SSP    60     T     H     H             1.00 
 SSP    61     L     H     H             1.00 
 SSP    62     L     H     H             1.00 
 SSP    63     D     C     H             1.00 
 SSP    64     E     C     C             1.00 
 SSP    65     K     C     C             1.00 
 SSP  BREAK 
 SSP    76     S     H     C             1.00 
 SSP    77     E     H     H             1.00 
 SSP    78     W     H     H             1.00 
 SSP    79     E     H     H             1.00 
 SSP    80     K     H     H             1.00 
 SSP    81     L     H     H             1.00 
 SSP    82     V     H     H             1.00 
 SSP    83     R     H     H             1.00 
 SSP    84     D     H     H             1.00 
 SSP    85     A     H     H             1.00 
 SSP    86     M     H     C             1.00 
 SSP    87     T     H     C             1.00 
 SSP    88     S     C     C             1.00 
 SSP    89     G     C     C             1.00 
 SSP  BREAK 
 SSP    94     Q     H     C             1.00 
 SSP    95     F     H     H             1.00 
 SSP    96     R     H     H             1.00 
 SSP    97     E     H     H             1.00 
 SSP    98     F     H     H             1.00 
 SSP    99     L     H     H             1.00 
 SSP   100     D     H     H             1.00 
 SSP   101     Y     H     H             1.00 
 SSP   102     Q     H     H             1.00 
 SSP   103     K     H     H             1.00 
 SSP   104     W     H     H             1.00 
 SSP   105     R     H     H             1.00 
 SSP   106     K     H     C             1.00 
 
 NP      - Number of predicted residues 
 PP      - Percent of predicted residues 
 Q3      - Residues predicted correctly (H, E, C) 
 Qhelix  - Residues predicted correctly (HELIX) 
 Qstrand - Residues predicted correctly (STRAND) 
 Qcoil   - Residues predicted correctly (COIL) 
 SOV     - Segment overlap quantity 
 
                     Q3      Qhelix   Qstrand   Qcoil      PP 
 Qindex              88.9      89.4      0.0     87.5     87.4 
 
                     ALL      HELIX    STRAND    COIL      PP 
 SOV observed        98.3     100.0    100.0     93.8     87.4 
 
           Considered    Percent predicted   Percent predicted 
            segments        correctly         as wrong type 
 SEG            7             100.0               0.0 
 
         Number of wrong    Number of wrong 
             breaks             joins 
 B/J            0                 0 
 
  CONFIDENCE (P)     Average     NP    PP/BIN     Q3 
 BIN  0.90 - 1.00      1.00      90    100.0     88.9 
 
 BIN  0.00 - 1.00      1.00      90    100.0     88.9 
 
 
 
 
              predicted        number of target      total number   total number 
                as a         contacts possible in         of             of 
               contact         predicted subset:       contacts       contacts 
            percent  number    percent    number       in target    in prediction 
 CONTACTS:     0.0      0         0.0        0             0              0 
 
 
 
 CONSIDERED - explicitly provided contacts (with positive confidence) or 
              non contacts (with negative confidence) possible to evaluate 
 SEP      - Minimum separation between residues considered 
 NPC      - Number of contacts predicted correctly 
 PC(P)    - Percent of contacts predicted correctly from CONSIDERED in PREDICTION 
 PC(T)    - Percent of contacts predicted correctly from CONSIDERED in TARGET with SEP limit 
 PC(TT)   - Percent of contacts predicted correctly from TOTAL in TARGET with SEP limit 
 
                        CONSIDERED     CONSIDERED       TOTAL          TOTAL 
                      in PREDICTION    in TARGET    in PREDICTION    in TARGET 
 ALL RESIDUES USED          90              90            90            103 
 ALL CONTACTS (< 8.0A)     388             367           388            423 
 
               in PREDICTION      Predicted correctly          Submitted as        in TARGET 
                CONSIDERED     NPC   PC(P)   PC(T)   PC(TT)    NOT  predicted   CONSIDERED  TOTAL  |   SEP 
 RES CONTACTS       388        337   86.86   91.83   79.67       0     0.00         367       423  |   1-9999 
 RES CONTACTS       281        274   97.51   98.92   84.31       0     0.00         277       325  |   1-4    
 RES CONTACTS        27         19   70.37   95.00   76.00       0     0.00          20        25  |   5-8    
 RES CONTACTS        80         44   55.00   62.86   60.27       0     0.00          70        73  |   9-9999 
 
 
 
# WARNING! TARGET 845 atoms, MODEL 914 atoms, 845 common with TARGET 
           Number of atoms possible to evaluate: 743 
 
MEASURES: 
 
 
ANGLES RMS : model <-> target 
 
 (MC: PHI+PSI) DIHED RMS:      ARMSMC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    33.02           84.9   152    75.6   201     ARMSMC  
     SECONDARY STRUCTURE . .    23.70           93.1   101    79.5   127     ARMSMC  
     SURFACE . . . . . . . .    35.10           85.4   103    68.2   151     ARMSMC  
     BURIED  . . . . . . . .    28.14           83.7    49    98.0    50     ARMSMC  
 (SC: CHI1) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    77.53           52.1    71    78.0    91     ARMSSC1 
     RELIABLE SIDE CHAINS  .    79.70           49.2    65    77.4    84     ARMSSC1 
     SECONDARY STRUCTURE . .    85.80           42.6    47    82.5    57     ARMSSC1 
     SURFACE . . . . . . . .    73.17           55.1    49    71.0    69     ARMSSC1 
     BURIED  . . . . . . . .    86.47           45.5    22   100.0    22     ARMSSC1 
 (SC: CHI2) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    77.01           41.5    53    82.8    64     ARMSSC2 
     RELIABLE SIDE CHAINS  .    69.25           45.0    40    81.6    49     ARMSSC2 
     SECONDARY STRUCTURE . .    84.11           41.7    36    85.7    42     ARMSSC2 
     SURFACE . . . . . . . .    75.56           39.5    38    77.6    49     ARMSSC2 
     BURIED  . . . . . . . .    80.57           46.7    15   100.0    15     ARMSSC2 
 (SC: CHI3) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    82.65           36.0    25    80.6    31     ARMSSC3 
     RELIABLE SIDE CHAINS  .    87.19           33.3    21    80.8    26     ARMSSC3 
     SECONDARY STRUCTURE . .    88.74           31.6    19    82.6    23     ARMSSC3 
     SURFACE . . . . . . . .    74.01           36.4    22    78.6    28     ARMSSC3 
     BURIED  . . . . . . . .   129.42           33.3     3   100.0     3     ARMSSC3 
 (SC: CHI4) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    85.67           30.0    10    83.3    12     ARMSSC4 
     RELIABLE SIDE CHAINS  .    85.67           30.0    10    83.3    12     ARMSSC4 
     SECONDARY STRUCTURE . .    81.14           28.6     7    77.8     9     ARMSSC4 
     SURFACE . . . . . . . .    76.96           37.5     8    80.0    10     ARMSSC4 
     BURIED  . . . . . . . .   114.04            0.0     2   100.0     2     ARMSSC4 
 
COORDINATES RMS : model <-> target 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   5.00): 
 FRAGMENT  1    1 - 42   42   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    42      1 - 42       1.15     1.15 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  2   45 - 65   21   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    21     45 - 65       1.82     1.82 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  3   76 - 89   14   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    14     76 - 89       1.14     1.14 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  4   94 - 106  13   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    13     94 - 106      0.15     0.15 
  LCS LOCAL_SCORE:            100.00 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   2.00): 
 FRAGMENT  1    1 - 42   42   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    42      1 - 42       1.15     1.15 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  2   45 - 65   21   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    21     45 - 65       1.82     1.82 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  3   76 - 89   14   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    14     76 - 89       1.14     1.14 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  4   94 - 106  13   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    13     94 - 106      0.15     0.15 
  LCS LOCAL_SCORE:            100.00 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   1.00): 
 FRAGMENT  1    1 - 42   42   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    39      1 - 39       0.97     1.18 
  LONGEST_CONTINUOUS_SEGMENT    39      2 - 40       0.95     1.16 
  LCS LOCAL_SCORE:             90.36 
 
 FRAGMENT  2   45 - 65   21   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    19     45 - 63       0.97     2.06 
  LCS LOCAL_SCORE:             83.22 
 
 FRAGMENT  3   76 - 89   14   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    13     76 - 88       0.68     1.25 
  LCS LOCAL_SCORE:             88.78 
 
 FRAGMENT  4   94 - 106  13   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    13     94 - 106      0.15     0.15 
  LCS LOCAL_SCORE:            100.00 
 
 
 LCS                   LENGTH_OF_THE 
 LCS  RESIDUE  RESIDUE    CONTINUOUS  SECONDARY 
 LCS   NUMBER     NAME       SEGMENT  STRUCTURE   GDT_DATA_COLUMNS (PERCENT OF THE TARGET) 
 LCS       1       M    39   42   42       C        2   4   4  35  47  58  60  63  64  64  66  66  66  67  67  68  68  69  69  69  
 LCS       2       I    39   42   42       C       10  36  51  54  55  58  60  63  64  64  66  66  66  67  67  68  68  69  69  69  
 LCS       3       G    39   42   42       H       15  44  51  54  55  58  60  63  64  64  66  66  66  67  67  68  68  69  69  69  
 LCS       4       Q    39   42   42       H       15  44  51  54  55  58  60  63  64  64  66  66  66  67  67  68  68  69  69  69  
 LCS       5       R    39   42   42       H       19  44  51  54  55  58  60  63  64  64  66  66  66  67  67  68  68  69  69  69  
 LCS       6       I    39   42   42       H       18  44  51  54  55  58  60  63  64  64  66  66  66  67  67  68  68  69  69  69  
 LCS       7       K    39   42   42       H       17  44  51  54  55  58  60  63  64  64  66  66  66  67  67  68  68  69  69  69  
 LCS       8       Q    39   42   42       H       19  44  51  54  55  58  60  63  64  64  66  66  66  67  67  68  68  69  69  69  
 LCS       9       Y    39   42   42       H       19  44  51  54  55  58  60  63  64  64  66  66  66  67  67  68  68  69  69  69  
 LCS      10       R    39   42   42       H       18  44  51  54  55  58  60  63  64  64  66  66  66  67  67  68  68  69  69  69  
 LCS      11       K    39   42   42       H       17  44  51  54  55  58  60  63  64  64  66  66  66  67  67  68  68  69  69  69  
 LCS      12       E    39   42   42       H       17  44  51  54  55  58  60  63  64  64  66  66  66  67  67  68  68  69  69  69  
 LCS      13       K    39   42   42       C       19  44  51  54  55  58  60  63  64  64  66  66  66  67  67  68  68  69  69  69  
 LCS      14       G    39   42   42       C       19  44  51  54  55  58  60  63  64  64  66  66  66  67  67  68  68  69  69  69  
 LCS      15       Y    39   42   42       C       19  44  51  54  55  58  60  63  64  64  66  66  66  67  67  68  68  69  69  69  
 LCS      16       S    39   42   42       C       19  44  51  54  55  58  60  63  64  64  66  66  66  67  67  68  68  69  69  69  
 LCS      17       L    39   42   42       H       19  44  51  54  55  58  60  63  64  64  66  66  66  67  67  68  68  69  69  69  
 LCS      18       S    39   42   42       H       19  44  51  54  55  58  60  63  64  64  66  66  66  67  67  68  68  69  69  69  
 LCS      19       E    39   42   42       H       19  44  51  54  55  58  60  63  64  64  66  66  66  67  67  68  68  69  69  69  
 LCS      20       L    39   42   42       H       19  44  51  54  55  58  60  63  64  64  66  66  66  67  67  68  68  69  69  69  
 LCS      21       A    39   42   42       H       19  44  51  54  55  58  60  63  64  64  66  66  66  67  67  68  68  69  69  69  
 LCS      22       E    39   42   42       H       19  44  51  54  55  58  60  63  64  64  66  66  66  67  67  68  68  69  69  69  
 LCS      23       K    39   42   42       H       18  44  51  54  55  58  60  63  64  64  66  66  66  67  67  68  68  69  69  69  
 LCS      24       A    39   42   42       H       11  44  51  54  55  58  60  63  64  64  66  66  66  67  67  68  68  69  69  69  
 LCS      25       G    39   42   42       C       18  44  51  54  55  58  60  63  64  64  66  66  66  67  67  68  68  69  69  69  
 LCS      26       V    39   42   42       C       10  42  51  54  55  58  60  63  64  64  66  66  66  67  67  68  68  69  69  69  
 LCS      27       A    39   42   42       C       10  42  51  54  55  58  60  63  64  64  66  66  66  67  67  68  68  69  69  69  
 LCS      28       K    39   42   42       H       10  44  51  54  55  58  60  63  64  64  66  66  66  67  67  68  68  69  69  69  
 LCS      29       S    39   42   42       H       19  44  51  54  55  58  60  63  64  64  66  66  66  67  67  68  68  69  69  69  
 LCS      30       Y    39   42   42       H       10  44  51  54  55  58  60  63  64  64  66  66  66  67  67  68  68  69  69  69  
 LCS      31       L    39   42   42       H       10  43  51  54  55  58  60  63  64  64  66  66  66  67  67  68  68  69  69  69  
 LCS      32       S    39   42   42       H       19  44  51  54  55  58  60  63  64  64  66  66  66  67  67  68  68  69  69  69  
 LCS      33       S    39   42   42       H       17  44  51  54  55  58  60  63  64  64  66  66  66  67  67  68  68  69  69  69  
 LCS      34       I    39   42   42       H       10  44  51  54  55  58  60  63  64  64  66  66  66  67  67  68  68  69  69  69  
 LCS      35       E    39   42   42       H       18  44  51  54  55  58  60  63  64  64  66  66  66  67  67  68  68  69  69  69  
 LCS      36       R    39   42   42       C       10  44  51  54  55  58  60  63  64  64  66  66  66  67  67  68  68  69  69  69  
 LCS      37       N    39   42   42       C       12  44  51  54  55  58  60  63  64  64  66  66  66  67  67  68  68  69  69  69  
 LCS      38       L    39   42   42       C        9  18  49  54  55  58  60  63  64  64  66  66  66  67  67  68  68  69  69  69  
 LCS      39       Q    39   42   42       C       10  16  34  49  55  58  60  63  64  64  66  66  66  67  67  68  68  69  69  69  
 LCS      40       T    39   42   42       C        5  15  20  35  40  57  60  63  64  64  66  66  66  67  67  68  68  69  69  69  
 LCS      41       N    17   42   42       C        3  16  27  38  44  57  60  61  64  64  66  66  66  67  67  68  68  69  69  69  
 LCS      42       P    17   42   42       C        3  12  33  54  55  58  60  63  64  64  66  66  66  67  67  68  68  69  69  69  
 LCS      43       S     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      44       I     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      45       Q    19   21   21       H        2  17  34  49  53  58  60  63  64  64  66  66  66  67  67  68  68  69  69  69  
 LCS      46       F    19   21   21       H       13  30  51  54  55  58  60  63  64  64  66  66  66  67  67  68  68  69  69  69  
 LCS      47       L    19   21   21       H       13  30  51  54  55  58  60  63  64  64  66  66  66  67  67  68  68  69  69  69  
 LCS      48       E    19   21   21       H       13  44  51  54  55  58  60  63  64  64  66  66  66  67  67  68  68  69  69  69  
 LCS      49       K    19   21   21       H       13  44  51  54  55  58  60  63  64  64  66  66  66  67  67  68  68  69  69  69  
 LCS      50       V    19   21   21       H       13  44  51  54  55  58  60  63  64  64  66  66  66  67  67  68  68  69  69  69  
 LCS      51       S    19   21   21       H       18  44  51  54  55  58  60  63  64  64  66  66  66  67  67  68  68  69  69  69  
 LCS      52       A    19   21   21       H       19  44  51  54  55  58  60  63  64  64  66  66  66  67  67  68  68  69  69  69  
 LCS      53       V    19   21   21       H       19  44  51  54  55  58  60  63  64  64  66  66  66  67  67  68  68  69  69  69  
 LCS      54       L    19   21   21       H       13  44  51  54  55  58  60  63  64  64  66  66  66  67  67  68  68  69  69  69  
 LCS      55       D    19   21   21       C       19  44  51  54  55  58  60  63  64  64  66  66  66  67  67  68  68  69  69  69  
 LCS      56       V    19   21   21       C       19  44  51  54  55  58  60  63  64  64  66  66  66  67  67  68  68  69  69  69  
 LCS      57       S    19   21   21       C       19  44  51  54  55  58  60  63  64  64  66  66  66  67  67  68  68  69  69  69  
 LCS      58       V    19   21   21       H       19  44  51  54  55  58  60  63  64  64  66  66  66  67  67  68  68  69  69  69  
 LCS      59       H    19   21   21       H       13  44  51  54  55  58  60  63  64  64  66  66  66  67  67  68  68  69  69  69  
 LCS      60       T    19   21   21       H       13  44  51  54  55  58  60  63  64  64  66  66  66  67  67  68  68  69  69  69  
 LCS      61       L    19   21   21       H       19  44  51  54  55  58  60  63  64  64  66  66  66  67  67  68  68  69  69  69  
 LCS      62       L    19   21   21       H       12  44  51  54  55  58  60  63  64  64  66  66  66  67  67  68  68  69  69  69  
 LCS      63       D    19   21   21       C       13  30  40  54  55  58  60  63  64  64  66  66  66  67  67  68  68  69  69  69  
 LCS      64       E     3   21   21       C        2   2   3  35  54  58  60  63  64  64  66  66  66  67  67  68  68  69  69  69  
 LCS      65       K     3   21   21       C        2   4   4  25  34  39  40  63  64  64  66  66  66  67  67  68  68  69  69  69  
 LCS      66       H     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      67       E     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      68       T     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS    BREAK 
 LCS      74       L     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      75       D     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      76       S    13   14   14       H       10  11  12  12  12  13  13  13  14  16  16  18  20  20  20  21  21  21  22  22  
 LCS      77       E    13   14   14       H       10  11  12  12  12  13  13  13  13  13  13  18  20  20  20  21  21  21  22  22  
 LCS      78       W    13   14   14       H       10  11  12  12  12  13  13  13  13  13  13  14  20  20  20  21  21  21  22  22  
 LCS      79       E    13   14   14       H       10  11  12  12  12  13  13  13  14  16  16  18  20  20  20  21  21  21  22  22  
 LCS      80       K    13   14   14       H       10  11  12  12  12  13  13  13  14  16  16  18  20  20  20  21  21  21  22  22  
 LCS      81       L    13   14   14       H       10  11  12  12  12  13  13  13  13  16  16  18  20  20  20  21  21  21  22  31  
 LCS      82       V    13   14   14       H       10  11  12  12  12  13  13  13  14  16  16  18  20  20  20  24  25  25  29  31  
 LCS      83       R    13   14   14       H       10  11  12  12  12  13  13  13  14  16  16  18  20  20  20  24  25  25  29  31  
 LCS      84       D    13   14   14       H       10  11  12  12  12  13  13  13  14  16  16  18  20  20  20  24  25  25  29  31  
 LCS      85       A    13   14   14       H       10  11  12  12  12  13  13  13  14  16  16  18  20  20  20  24  25  25  29  31  
 LCS      86       M    13   14   14       H       10  11  12  12  12  13  13  13  14  16  16  18  20  20  20  24  25  25  29  31  
 LCS      87       T    13   14   14       H        3  11  12  12  12  13  13  13  14  16  16  18  20  20  20  24  25  25  29  31  
 LCS      88       S    13   14   14       C        3   6  12  12  12  13  13  13  14  16  16  18  20  20  20  21  21  21  22  22  
 LCS      89       G     5   14   14       C        2   2   4   8  12  13  13  13  13  16  16  18  20  20  20  21  21  21  22  22  
 LCS      90       V     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      91       S     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      92       K     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      93       K     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      94       Q    13   13   13       H       12  12  12  12  12  12  12  12  14  16  16  18  20  40  67  68  68  69  69  69  
 LCS      95       F    13   13   13       H       12  12  12  12  12  12  12  12  14  16  16  18  33  40  45  66  68  69  69  69  
 LCS      96       R    13   13   13       H       12  12  12  12  12  12  12  12  14  16  16  18  20  20  20  21  53  55  58  61  
 LCS      97       E    13   13   13       H       12  12  12  12  12  12  12  12  14  16  66  66  66  67  67  68  68  69  69  69  
 LCS      98       F    13   13   13       H       12  12  12  12  12  12  34  41  55  60  66  66  66  67  67  68  68  69  69  69  
 LCS      99       L    13   13   13       H       12  12  12  12  12  12  12  12  40  51  61  66  66  67  67  68  68  69  69  69  
 LCS     100       D    13   13   13       H       12  12  12  12  12  12  51  63  64  64  66  66  66  67  67  68  68  69  69  69  
 LCS     101       Y    13   13   13       H       12  12  12  12  12  12  12  63  64  64  66  66  66  67  67  68  68  69  69  69  
 LCS     102       Q    13   13   13       H       12  12  12  12  12  12  12  12  12  13  22  23  24  67  67  68  68  69  69  69  
 LCS     103       K    13   13   13       H       12  12  12  12  12  34  51  63  64  64  66  66  66  67  67  68  68  69  69  69  
 LCS     104       W    13   13   13       H       12  12  12  12  12  12  12  12  12  63  63  64  65  66  66  68  68  69  69  69  
 LCS     105       R    13   13   13       H       12  12  12  12  12  12  12  12  12  13  13  14  16  16  17  17  18  19  21  21  
 LCS     106       K    13   13   13       H       12  12  12  12  12  12  12  12  12  13  13  14  16  16  17  17  18  18  21  21  
 LCS TOTAL_SCORE (RMS CUTOFF   1.00):  21.72 
 
 NUMBER_OF_CA_Tg:  103      NUMBER_OF_CA_Pr:   90      PERCENT_OF_CA:  87.38  
 
GLOBAL_DISTANCE_TEST (the largest set of residues under DISTANCE_CUTOFF (using LCS results)): 
 GDT DISTANCE_CUTOFF     0.50    1.00    1.50    2.00    2.50    3.00    3.50    4.00    4.50    5.00    5.50    6.00    6.50    7.00    7.50    8.00    8.50    9.00    9.50   10.00  
 GDT NUMBER_OF_CA_max      20      46      53      56      57      60      62      65      66      66      68      69      69      70      70      71      71      72      72      72  
 GDT PERCENT_OF_CA_Pr   22.22   51.11   58.89   62.22   63.33   66.67   68.89   72.22   73.33   73.33   75.56   76.67   76.67   77.78   77.78   78.89   78.89   80.00   80.00   80.00 
 GDT PERCENT_OF_CA_Tg   19.42   44.66   51.46   54.37   55.34   58.25   60.19   63.11   64.08   64.08   66.02   66.99   66.99   67.96   67.96   68.93   68.93   69.90   69.90   69.90 
 GDT FRAGMENT: Beg-End   9-61    3-62    2-62    2-63    2-63    1-64    1-64    1-103   1-103   1-103   1-103   1-103   1-103   1-103   1-103   1-104   1-104   1-104   1-104   1-104 
 GDT RMS_LOCAL           0.38    0.67    0.78    0.89    0.95    1.24    1.36    2.19    2.21    2.21    2.68    2.91    2.91    3.06    3.06    3.14    3.14    3.40    3.40    3.40 
 GDT RMS_ALL_CA         12.92   12.84   12.77   12.74   12.78   12.77   12.86   11.87   11.91   11.91   11.41   11.19   11.19   11.08   11.08   11.16   11.16   10.98   10.98   10.98 
 
 
 TEST (CA)  RMS =   9.39               (Number of atoms:   90) 
 
 (CA)  RMS:                   CRMSCA         NP     PP     TN 
     ALL . . . . . . . . . .    9.39         90    87.4   103     CRMSCA  
     CRN = ALL/NP  . . . . .    0.1043                            CRMSCA  
     SECONDARY STRUCTURE . .   10.41         61    93.8    65     CRMSCA  
     SURFACE . . . . . . . .   10.74         65    83.3    78     CRMSCA  
     BURIED  . . . . . . . .    4.18         25   100.0    25     CRMSCA  
 (MC)  RMS:                   CRMSMC         NP     PP     TN 
     ALL . . . . . . . . . .    9.42        446    87.3   511     CRMSMC  
     SECONDARY STRUCTURE . .   10.48        304    93.8   324     CRMSMC  
     SURFACE . . . . . . . .   10.76        322    83.2   387     CRMSMC  
     BURIED  . . . . . . . .    4.29        124   100.0   124     CRMSMC  
 (SC)  RMS:                   CRMSSC         NP     PP     TN 
     ALL . . . . . . . . . .   11.22        383    88.5   433     CRMSSC  
     RELIABLE SIDE CHAINS  .   11.71        331    89.2   371     CRMSSC  
     SECONDARY STRUCTURE . .   12.42        281    94.6   297     CRMSSC  
     SURFACE . . . . . . . .   12.55        294    85.5   344     CRMSSC  
     BURIED  . . . . . . . .    4.56         89   100.0    89     CRMSSC  
 (ALL) RMS:                   CRMSALL        NP     PP     TN 
     ALL . . . . . . . . . .   10.34        743    87.9   845     CRMSALL 
     SECONDARY STRUCTURE . .   11.51        525    94.3   557     CRMSALL 
     SURFACE . . . . . . . .   11.69        554    84.5   656     CRMSALL 
     BURIED  . . . . . . . .    4.44        189   100.0   189     CRMSALL 
 
Accuracy of estimates of atomic coordinate errors: model <-> target 
 
 (CA)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    4.064      0.299       0.175     90    87.4   103     ERRCA  
     SECONDARY STRUCTURE . .    4.555      0.305       0.190     61    93.8    65     ERRCA  
     SURFACE . . . . . . . .    4.995      0.321       0.172     65    83.3    78     ERRCA  
     BURIED  . . . . . . . .    1.641      0.242       0.185     25   100.0    25     ERRCA  
 (MC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    4.086      0.300       0.176    446    87.3   511     ERRMC  
     SECONDARY STRUCTURE . .    4.591      0.304       0.189    304    93.8   324     ERRMC  
     SURFACE . . . . . . . .    5.008      0.322       0.174    322    83.2   387     ERRMC  
     BURIED  . . . . . . . .    1.690      0.241       0.181    124   100.0   124     ERRMC  
 (SC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    4.124      0.232       0.151    383    88.5   433     ERRSC  
     RELIABLE SIDE CHAINS  .    4.391      0.237       0.146    331    89.2   371     ERRSC  
     SECONDARY STRUCTURE . .    4.782      0.241       0.160    281    94.6   297     ERRSC  
     SURFACE . . . . . . . .    4.904      0.246       0.145    294    85.5   344     ERRSC  
     BURIED  . . . . . . . .    1.547      0.187       0.170     89   100.0    89     ERRSC  
 (ALL) ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    4.075      0.264       0.163    743    87.9   845     ERRALL 
     SECONDARY STRUCTURE . .    4.669      0.271       0.175    525    94.3   557     ERRALL 
     SURFACE . . . . . . . .    4.904      0.280       0.158    554    84.5   656     ERRALL 
     BURIED  . . . . . . . .    1.647      0.219       0.179    189   100.0   189     ERRALL 
 
 
 
DISTANCES: Percent of total atoms where distance (target <-> model) in global 
           superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms 
            D < 1     D < 2     D < 3     D < 5    D < 10      NP      TN 
CA  (N)         2         8        16        35        69      90     103   DISTCA 
CA  (P)      1.94      7.77     15.53     33.98     66.99             103   DISTCA 
CA  (RMS)    0.92      1.39      2.03      3.26      5.37                   DISTCA 
 
ALL (N)         8        50       107       248       547     743     845   DISTALL 
ALL (P)      0.95      5.92     12.66     29.35     64.73             845   DISTALL 
ALL (RMS)    0.79      1.47      2.13      3.34      5.55                   DISTALL 
 
 
 
 
END of the results output 
