 
####################################################### 
#                                                     # 
#                        ACE                          # 
#                                                     # 
#        Ab-initio protein structure prediction       # 
#                         &                           # 
#               Comparative modeling                  # 
#                                                     # 
#                     Evaluator                       # 
#                                                     # 
#                ----------------- 11/1998            # 
#                                                     # 
#                         by                          # 
#           Adam Zemla & Ceslovas Venclovas           # 
#                                                     # 
#         Protein Structure Prediction Center         # 
#      Lawrence Livermore National Laboratory, CA     # 
#                                                     # 
####################################################### 
########################## 
#                        # 
#    ACE parameters:     # 
#                        # 
########################## 
# 
# MEASURES: 
# 
# For AB: 0 3 9 13 14 
# For CM: 0 1 2 3 6 7 8 9 10 11 12 13 14 18 
# 
ARMSMC  0 1 2     7 8 9    11 12 13 14 18 
ARMSSC  0 1 2 3 6 7 8 9    11 12 13 14 18 
# 
CRMSCA  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSMC  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSSC  0 1 2 3 6     9    11 12 13 14 18 
CRMSALL 0 1 2     7 8 9    11 12 13 14 18 
# 
D-E_CA  0 1 2     7 8 9    11 12 13 14 18 
D-E_MC  0 1 2     7 8 9    11 12 13 14 18 
D-E_SC  0 1 2 3 6 7 8 9    11 12 13 14 18 
D-E_ALL 0 1 2     7 8 9    11 12 13 14 18 
# 
# Output parameters 
# 
DIHED-OUTPUT        0         #    1 - ON, 0 - OFF 
RES-CONTACTS        0         #    1 - ON, 0 - OFF 
SS-OUTPUT           1         #    1 - ON, 0 - OFF 
PHI-PSI             0         #    1 - SEPARATELY, 0 - NO  
# 
# Calculation parameters 
# 
SOV-METHOD          1         #    0 - SOV 94,  1 - SOV 
# 
TEMP-FACTOR         30.0      #    Target structure temperature factor cutoff 
ACCESS-CUTOFF       0.20      #    Solvent accessibility cutoff   
ANGLES-CORRECT      30.0      #    target-model  (diff < 30.0)    
DSSP-HELIX          6         #    Secondary Structure subset: helix cutoff  
DSSP-STRAND         3         #    Secondary Structure subset: strand cutoff 
ROTAMERS-LIMIT      30.0      #    target-parent (diff > 30.0) 
ROTATION-MATRIX     0         #    1 - ON, 0 - OFF   
SC-SWAPPING         1         #    1 - ON, 0 - OFF    
SEP-CONTACTS        1         #    Separation interval along the chain 
RESIDUE-CONTACTS    8.0       #    Contact definition between two C-beta atoms 
# 
CRMS-METHOD         1         #    0 - ALL, 1 - CA, 2 - MC+CB, 3 - CA (iter)  
ITER-CUTOFF         2.5       #    DISTANCE cutoff (for CA (iter))  
LCS_GDT             1         #    LCS and GDT calculations (1 - ON, 0 - OFF) 
########################## 
#                        # 
#      ACE results:      # 
#                        # 
########################## 
 
 
 
# WARNING! The number of residues in SS section: 26 , MODEL 26 , TARGET 103 
#          The number of residues possible to evaluate: 26 
 
 
 SECONDARY STRUCTURE PREDICTION: 
       NUM    RES   SS   Prediction   Probability 
 SSP    78     W     H     C             1.00 
 SSP    79     E     H     C             1.00 
 SSP    80     K     H     H             1.00 
 SSP    81     L     H     H             1.00 
 SSP    82     V     H     H             1.00 
 SSP    83     R     H     H             1.00 
 SSP    84     D     H     H             1.00 
 SSP    85     A     H     H             1.00 
 SSP    86     M     H     H             1.00 
 SSP    87     T     H     H             1.00 
 SSP    88     S     C     H             1.00 
 SSP    89     G     C     H             1.00 
 SSP    90     V     C     C             1.00 
 SSP    91     S     C     C             1.00 
 SSP    92     K     H     C             1.00 
 SSP    93     K     H     C             1.00 
 SSP    94     Q     H     C             1.00 
 SSP    95     F     H     H             1.00 
 SSP    96     R     H     H             1.00 
 SSP    97     E     H     H             1.00 
 SSP    98     F     H     H             1.00 
 SSP    99     L     H     H             1.00 
 SSP   100     D     H     H             1.00 
 SSP   101     Y     H     H             1.00 
 SSP   102     Q     H     H             1.00 
 SSP   103     K     H     C             1.00 
 SSP  BREAK 
 
 NP      - Number of predicted residues 
 PP      - Percent of predicted residues 
 Q3      - Residues predicted correctly (H, E, C) 
 Qhelix  - Residues predicted correctly (HELIX) 
 Qstrand - Residues predicted correctly (STRAND) 
 Qcoil   - Residues predicted correctly (COIL) 
 SOV     - Segment overlap quantity 
 
                     Q3      Qhelix   Qstrand   Qcoil      PP 
 Qindex              69.2      72.7      0.0     50.0     25.2 
 
                     ALL      HELIX    STRAND    COIL      PP 
 SOV observed        93.4     100.0    100.0     57.1     25.2 
 
           Considered    Percent predicted   Percent predicted 
            segments        correctly         as wrong type 
 SEG            2             100.0               0.0 
 
         Number of wrong    Number of wrong 
             breaks             joins 
 B/J            0                 0 
 
  CONFIDENCE (P)     Average     NP    PP/BIN     Q3 
 BIN  0.90 - 1.00      1.00      26    100.0     69.2 
 
 BIN  0.00 - 1.00      1.00      26    100.0     69.2 
 
 
 
 
              predicted        number of target      total number   total number 
                as a         contacts possible in         of             of 
               contact         predicted subset:       contacts       contacts 
            percent  number    percent    number       in target    in prediction 
 CONTACTS:     0.0      0         0.0        0             0              0 
 
 
# WARNING! The number of residues with CB atom coordinates: MODEL 0 , TARGET 99 
 
# WARNING! TARGET 845 atoms, MODEL 794 atoms, 725 common with TARGET 
           Number of atoms possible to evaluate: 104 
 
MEASURES: 
 
 
ANGLES RMS : model <-> target 
 
 (MC: PHI+PSI) DIHED RMS:      ARMSMC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    56.44           72.5    40    19.9   201     ARMSMC  
     SECONDARY STRUCTURE . .    55.47           75.0    32    25.2   127     ARMSMC  
     SURFACE . . . . . . . .    56.44           72.5    40    26.5   151     ARMSMC  
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    50     ARMSMC  
 (SC: CHI1) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    91     ARMSSC1 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    84     ARMSSC1 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    57     ARMSSC1 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    69     ARMSSC1 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    22     ARMSSC1 
 (SC: CHI2) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    64     ARMSSC2 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    49     ARMSSC2 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    42     ARMSSC2 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    49     ARMSSC2 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    15     ARMSSC2 
 (SC: CHI3) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    31     ARMSSC3 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    26     ARMSSC3 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    23     ARMSSC3 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    28     ARMSSC3 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     3     ARMSSC3 
 (SC: CHI4) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    12     ARMSSC4 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    12     ARMSSC4 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0     9     ARMSSC4 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    10     ARMSSC4 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     2     ARMSSC4 
 
COORDINATES RMS : model <-> target 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   5.00): 
 FRAGMENT  1   78 - 103  26   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    26     78 - 103      4.75     4.75 
  LCS LOCAL_SCORE:            100.00 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   2.00): 
 FRAGMENT  1   78 - 103  26   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    12     79 - 90       1.81     9.40 
  LONGEST_CONTINUOUS_SEGMENT    12     92 - 103      1.54    20.21 
  LCS LOCAL_SCORE:             43.79 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   1.00): 
 FRAGMENT  1   78 - 103  26   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    11     79 - 89       0.77    10.25 
  LCS LOCAL_SCORE:             34.91 
 
 
 LCS                   LENGTH_OF_THE 
 LCS  RESIDUE  RESIDUE    CONTINUOUS  SECONDARY 
 LCS   NUMBER     NAME       SEGMENT  STRUCTURE   GDT_DATA_COLUMNS (PERCENT OF THE TARGET) 
 LCS    BREAK 
 LCS      78       W     3    3   26       H        0   2   2   2   3   3   4   5   8  14  14  15  15  18  19  20  23  25  25  25  
 LCS      79       E    11   12   26       H        5   9   9  10  10  10  12  13  16  17  20  23  23  23  24  24  24  25  25  25  
 LCS      80       K    11   12   26       H        8   9   9  10  10  10  12  15  17  19  22  23  23  23  24  24  24  25  25  25  
 LCS      81       L    11   12   26       H        8   9   9  10  10  10  12  15  17  19  22  23  23  23  24  24  24  25  25  25  
 LCS      82       V    11   12   26       H        8   9   9  10  10  10  12  15  17  19  22  23  23  23  24  24  24  25  25  25  
 LCS      83       R    11   12   26       H        8   9   9  10  10  10  12  15  17  19  22  23  23  23  24  24  24  25  25  25  
 LCS      84       D    11   12   26       H        8   9   9  10  10  10  12  15  17  19  22  23  23  23  24  24  24  25  25  25  
 LCS      85       A    11   12   26       H        8   9   9  10  10  10  12  15  17  19  22  23  23  23  24  24  24  25  25  25  
 LCS      86       M    11   12   26       H        8   9   9  10  10  10  12  15  17  19  22  23  23  23  24  24  24  25  25  25  
 LCS      87       T    11   12   26       H        8   9   9  10  10  10  12  15  17  19  22  23  23  23  24  24  24  25  25  25  
 LCS      88       S    11   12   26       C        8   9   9  10  10  10  12  15  17  19  22  23  23  23  24  24  24  25  25  25  
 LCS      89       G    11   12   26       C        2   2   9  10  10  10  10  10  11  14  15  18  21  23  24  24  24  25  25  25  
 LCS      90       V     3   12   26       C        2   4   6   8   9  10  12  15  17  19  22  23  23  23  24  24  24  25  25  25  
 LCS      91       S     3    5   26       C        2   2   3   5   8  10  12  15  17  19  22  23  23  23  24  24  24  25  25  25  
 LCS      92       K     3   12   26       H        2   2   7  10  10  10  11  11  14  18  22  23  23  23  24  24  24  25  25  25  
 LCS      93       K     3   12   26       H        2   2   3   4   8  10  12  15  17  19  22  23  23  23  24  24  24  25  25  25  
 LCS      94       Q    10   12   26       H        6   9   9  10  10  10  12  15  17  19  22  23  23  23  24  24  24  25  25  25  
 LCS      95       F    10   12   26       H        8   9   9  10  10  10  11  12  14  19  22  23  23  23  24  24  24  25  25  25  
 LCS      96       R    10   12   26       H        8   9   9  10  10  10  11  11  15  18  22  23  23  23  24  24  24  25  25  25  
 LCS      97       E    10   12   26       H        8   9   9  10  10  10  12  15  17  19  22  23  23  23  24  24  24  25  25  25  
 LCS      98       F    10   12   26       H        8   9   9  10  10  10  12  15  17  19  22  23  23  23  24  24  24  25  25  25  
 LCS      99       L    10   12   26       H        8   9   9  10  10  10  11  12  14  19  22  23  23  23  24  24  24  25  25  25  
 LCS     100       D    10   12   26       H        8   9   9  10  10  10  12  14  17  19  22  23  23  23  24  24  24  25  25  25  
 LCS     101       Y    10   12   26       H        8   9   9  10  10  10  12  15  17  19  22  23  23  23  24  24  24  25  25  25  
 LCS     102       Q    10   12   26       H        8   9   9  10  10  10  11  12  14  19  22  23  23  23  24  24  24  25  25  25  
 LCS     103       K    10   12   26       H        8   9   9  10  10  10  11  14  17  19  22  23  23  23  24  24  24  25  25  25  
 LCS TOTAL_SCORE (RMS CUTOFF   1.00):   2.22 
 
 NUMBER_OF_CA_Tg:  103      NUMBER_OF_CA_Pr:   26      PERCENT_OF_CA:  25.24  
 
GLOBAL_DISTANCE_TEST (the largest set of residues under DISTANCE_CUTOFF (using LCS results)): 
 GDT DISTANCE_CUTOFF     0.50    1.00    1.50    2.00    2.50    3.00    3.50    4.00    4.50    5.00    5.50    6.00    6.50    7.00    7.50    8.00    8.50    9.00    9.50   10.00  
 GDT NUMBER_OF_CA_max       9      10      10      11      11      11      13      16      18      20      23      24      24      24      25      25      25      26      26      26  
 GDT PERCENT_OF_CA_Pr   34.62   38.46   38.46   42.31   42.31   42.31   50.00   61.54   69.23   76.92   88.46   92.31   92.31   92.31   96.15   96.15   96.15  100.00  100.00  100.00 
 GDT PERCENT_OF_CA_Tg    8.74    9.71    9.71   10.68   10.68   10.68   12.62   15.53   17.48   19.42   22.33   23.30   23.30   23.30   24.27   24.27   24.27   25.24   25.24   25.24 
 GDT FRAGMENT: Beg-End  95-103  94-103  94-103  79-89   79-89   79-89   79-101  80-101  80-103  80-103  80-103  79-103  79-103  79-103  79-103  79-103  79-103  78-103  78-103  78-103 
 GDT RMS_LOCAL           0.29    0.37    0.37    0.77    0.77    0.77    2.12    2.81    3.24    3.61    3.94    4.07    4.07    4.07    4.29    4.29    4.29    4.75    4.75    4.75 
 GDT RMS_ALL_CA         19.85   20.09   20.09   10.25   10.25   10.25    6.10    5.14    4.91    4.91    4.85    4.79    4.79    4.79    4.81    4.81    4.81    4.75    4.75    4.75 
 
 
 TEST (CA)  RMS =   4.75               (Number of atoms:   26) 
 
 (CA)  RMS:                   CRMSCA         NP     PP     TN 
     ALL . . . . . . . . . .    4.75         26    25.2   103     CRMSCA  
     CRN = ALL/NP  . . . . .    0.1825                            CRMSCA  
     SECONDARY STRUCTURE . .    4.60         22    33.8    65     CRMSCA  
     SURFACE . . . . . . . .    4.75         26    33.3    78     CRMSCA  
     BURIED  . . . . . . . .    0.00          0     0.0    25     CRMSCA  
 (MC)  RMS:                   CRMSMC         NP     PP     TN 
     ALL . . . . . . . . . .    4.37        104    20.4   511     CRMSMC  
     SECONDARY STRUCTURE . .    4.22         88    27.2   324     CRMSMC  
     SURFACE . . . . . . . .    4.37        104    26.9   387     CRMSMC  
     BURIED  . . . . . . . .    0.00          0     0.0   124     CRMSMC  
 (SC)  RMS:                   CRMSSC         NP     PP     TN 
     ALL . . . . . . . . . .    0.00          0     0.0   433     CRMSSC  
     RELIABLE SIDE CHAINS  .    0.00          0     0.0   371     CRMSSC  
     SECONDARY STRUCTURE . .    0.00          0     0.0   297     CRMSSC  
     SURFACE . . . . . . . .    0.00          0     0.0   344     CRMSSC  
     BURIED  . . . . . . . .    0.00          0     0.0    89     CRMSSC  
 (ALL) RMS:                   CRMSALL        NP     PP     TN 
     ALL . . . . . . . . . .    4.37        104    12.3   845     CRMSALL 
     SECONDARY STRUCTURE . .    4.22         88    15.8   557     CRMSALL 
     SURFACE . . . . . . . .    4.37        104    15.9   656     CRMSALL 
     BURIED  . . . . . . . .    0.00          0     0.0   189     CRMSALL 
 
Accuracy of estimates of atomic coordinate errors: model <-> target 
 
 (CA)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    4.285      1.000       0.500     26    25.2   103     ERRCA  
     SECONDARY STRUCTURE . .    4.132      1.000       0.500     22    33.8    65     ERRCA  
     SURFACE . . . . . . . .    4.285      1.000       0.500     26    33.3    78     ERRCA  
     BURIED  . . . . . . . .    0.000      0.000       0.000      0     0.0    25     ERRCA  
 (MC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    3.910      1.000       0.500    104    20.4   511     ERRMC  
     SECONDARY STRUCTURE . .    3.749      1.000       0.500     88    27.2   324     ERRMC  
     SURFACE . . . . . . . .    3.910      1.000       0.500    104    26.9   387     ERRMC  
     BURIED  . . . . . . . .    0.000      0.000       0.000      0     0.0   124     ERRMC  
 (SC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    0.000      0.000       0.000      0     0.0   433     ERRSC  
     RELIABLE SIDE CHAINS  .    0.000      0.000       0.000      0     0.0   371     ERRSC  
     SECONDARY STRUCTURE . .    0.000      0.000       0.000      0     0.0   297     ERRSC  
     SURFACE . . . . . . . .    0.000      0.000       0.000      0     0.0   344     ERRSC  
     BURIED  . . . . . . . .    0.000      0.000       0.000      0     0.0    89     ERRSC  
 (ALL) ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    3.910      1.000       0.500    104    12.3   845     ERRALL 
     SECONDARY STRUCTURE . .    3.749      1.000       0.500     88    15.8   557     ERRALL 
     SURFACE . . . . . . . .    3.910      1.000       0.500    104    15.9   656     ERRALL 
     BURIED  . . . . . . . .    0.000      0.000       0.000      0     0.0   189     ERRALL 
 
 
 
DISTANCES: Percent of total atoms where distance (target <-> model) in global 
           superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms 
            D < 1     D < 2     D < 3     D < 5    D < 10      NP      TN 
CA  (N)         1         2         6        18        25      26     103   DISTCA 
CA  (P)      0.97      1.94      5.83     17.48     24.27             103   DISTCA 
CA  (RMS)    0.69      0.87      2.25      3.47      4.36                   DISTCA 
 
ALL (N)         4        11        35        81       102     104     845   DISTALL 
ALL (P)      0.47      1.30      4.14      9.59     12.07             845   DISTALL 
ALL (RMS)    0.66      1.36      2.24      3.30      4.12                   DISTALL 
 
 
 
 
END of the results output 
