 
####################################################### 
#                                                     # 
#                        ACE                          # 
#                                                     # 
#        Ab-initio protein structure prediction       # 
#                         &                           # 
#               Comparative modeling                  # 
#                                                     # 
#                     Evaluator                       # 
#                                                     # 
#                ----------------- 11/1998            # 
#                                                     # 
#                         by                          # 
#           Adam Zemla & Ceslovas Venclovas           # 
#                                                     # 
#         Protein Structure Prediction Center         # 
#      Lawrence Livermore National Laboratory, CA     # 
#                                                     # 
####################################################### 
########################## 
#                        # 
#    ACE parameters:     # 
#                        # 
########################## 
# 
# MEASURES: 
# 
# For AB: 0 3 9 13 14 
# For CM: 0 1 2 3 6 7 8 9 10 11 12 13 14 18 
# 
ARMSMC  0 1 2     7 8 9    11 12 13 14 18 
ARMSSC  0 1 2 3 6 7 8 9    11 12 13 14 18 
# 
CRMSCA  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSMC  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSSC  0 1 2 3 6     9    11 12 13 14 18 
CRMSALL 0 1 2     7 8 9    11 12 13 14 18 
# 
D-E_CA  0 1 2     7 8 9    11 12 13 14 18 
D-E_MC  0 1 2     7 8 9    11 12 13 14 18 
D-E_SC  0 1 2 3 6 7 8 9    11 12 13 14 18 
D-E_ALL 0 1 2     7 8 9    11 12 13 14 18 
# 
# Output parameters 
# 
DIHED-OUTPUT        0         #    1 - ON, 0 - OFF 
RES-CONTACTS        0         #    1 - ON, 0 - OFF 
SS-OUTPUT           1         #    1 - ON, 0 - OFF 
PHI-PSI             0         #    1 - SEPARATELY, 0 - NO  
# 
# Calculation parameters 
# 
SOV-METHOD          1         #    0 - SOV 94,  1 - SOV 
# 
TEMP-FACTOR         30.0      #    Target structure temperature factor cutoff 
ACCESS-CUTOFF       0.20      #    Solvent accessibility cutoff   
ANGLES-CORRECT      30.0      #    target-model  (diff < 30.0)    
DSSP-HELIX          6         #    Secondary Structure subset: helix cutoff  
DSSP-STRAND         3         #    Secondary Structure subset: strand cutoff 
ROTAMERS-LIMIT      30.0      #    target-parent (diff > 30.0) 
ROTATION-MATRIX     0         #    1 - ON, 0 - OFF   
SC-SWAPPING         1         #    1 - ON, 0 - OFF    
SEP-CONTACTS        1         #    Separation interval along the chain 
RESIDUE-CONTACTS    8.0       #    Contact definition between two C-beta atoms 
# 
CRMS-METHOD         1         #    0 - ALL, 1 - CA, 2 - MC+CB, 3 - CA (iter)  
ITER-CUTOFF         2.5       #    DISTANCE cutoff (for CA (iter))  
LCS_GDT             1         #    LCS and GDT calculations (1 - ON, 0 - OFF) 
########################## 
#                        # 
#      ACE results:      # 
#                        # 
########################## 
 
 
 
# WARNING! The number of residues in SS section: 81 , MODEL 81 , TARGET 226 
#          The number of residues possible to evaluate: 81 
 
 
 SECONDARY STRUCTURE PREDICTION: 
       NUM    RES   SS   Prediction   Probability 
 SSP     3     L     E     C             1.00 
 SSP     4     S     E     E             1.00 
 SSP     5     C     E     E             1.00 
 SSP     6     K     E     E             1.00 
 SSP     7     V     E     E             1.00 
 SSP     8     T     E     E             1.00 
 SSP     9     S     E     E             1.00 
 SSP    10     V     E     E             1.00 
 SSP    11     E     E     E             1.00 
 SSP    12     A     E     E             1.00 
 SSP    13     I     C     C             1.00 
 SSP    14     T     C     C             1.00 
 SSP    15     D     C     C             1.00 
 SSP    16     T     C     C             1.00 
 SSP    17     V     C     C             1.00 
 SSP    18     Y     E     E             1.00 
 SSP    19     R     E     E             1.00 
 SSP    20     V     E     E             1.00 
 SSP    21     R     E     E             1.00 
 SSP    22     I     E     E             1.00 
 SSP    23     V     E     E             1.00 
 SSP    24     P     E     E             1.00 
 SSP    25     D     C     C             1.00 
 SSP    26     A     C     C             1.00 
 SSP    27     A     C     C             1.00 
 SSP    28     F     C     C             1.00 
 SSP    29     S     C     C             1.00 
 SSP    30     F     C     C             1.00 
 SSP    31     R     C     C             1.00 
 SSP    32     A     C     C             1.00 
 SSP    33     G     C     C             1.00 
 SSP    34     Q     C     C             1.00 
 SSP    35     Y     E     E             1.00 
 SSP    36     L     E     E             1.00 
 SSP    37     M     E     E             1.00 
 SSP    38     V     E     E             1.00 
 SSP    39     V     E     E             1.00 
 SSP    40     M     C     E             1.00 
 SSP    41     D     C     C             1.00 
 SSP    42     E     C     C             1.00 
 SSP    43     R     C     C             1.00 
 SSP    44     D     C     E             1.00 
 SSP    45     K     E     E             1.00 
 SSP    46     R     E     E             1.00 
 SSP    47     P     E     E             1.00 
 SSP    48     F     E     E             1.00 
 SSP    49     S     E     E             1.00 
 SSP    50     M     C     C             1.00 
 SSP    51     A     C     C             1.00 
 SSP    52     S     C     C             1.00 
 SSP    53     T     C     C             1.00 
 SSP    54     P     C     C             1.00 
 SSP    55     D     C     C             1.00 
 SSP    56     E     C     C             1.00 
 SSP    57     K     C     C             1.00 
 SSP    58     G     C     C             1.00 
 SSP    59     F     C     C             1.00 
 SSP    60     I     E     E             1.00 
 SSP    61     E     E     E             1.00 
 SSP    62     L     E     E             1.00 
 SSP    63     H     E     E             1.00 
 SSP    64     I     E     E             1.00 
 SSP    65     G     C     C             1.00 
 SSP  BREAK 
 SSP    72     Y     C     C             1.00 
 SSP    73     A     C     H             1.00 
 SSP    74     K     H     H             1.00 
 SSP    75     A     H     H             1.00 
 SSP    76     V     H     H             1.00 
 SSP    77     M     H     H             1.00 
 SSP    78     D     H     C             1.00 
 SSP    79     R     H     C             1.00 
 SSP    80     I     H     C             1.00 
 SSP    81     L     H     C             1.00 
 SSP    82     K     H     C             1.00 
 SSP    83     D     H     E             1.00 
 SSP    84     H     C     E             1.00 
 SSP    85     Q     E     E             1.00 
 SSP    86     I     E     E             1.00 
 SSP    87     V     E     C             1.00 
 SSP    88     V     E     C             1.00 
 SSP    89     D     E     C             1.00 
 SSP  BREAK 
 
 NP      - Number of predicted residues 
 PP      - Percent of predicted residues 
 Q3      - Residues predicted correctly (H, E, C) 
 Qhelix  - Residues predicted correctly (HELIX) 
 Qstrand - Residues predicted correctly (STRAND) 
 Qcoil   - Residues predicted correctly (COIL) 
 SOV     - Segment overlap quantity 
 
                     Q3      Qhelix   Qstrand   Qcoil      PP 
 Qindex              82.7      40.0     89.2     88.2     35.8 
 
                     ALL      HELIX    STRAND    COIL      PP 
 SOV observed        88.0      54.5     94.2     91.2     35.8 
 
           Considered    Percent predicted   Percent predicted 
            segments        correctly         as wrong type 
 SEG            7              97.1               2.9 
 
         Number of wrong    Number of wrong 
             breaks             joins 
 B/J            0                 0 
 
  CONFIDENCE (P)     Average     NP    PP/BIN     Q3 
 BIN  0.90 - 1.00      1.00      81    100.0     82.7 
 
 BIN  0.00 - 1.00      1.00      81    100.0     82.7 
 
 
 
 
              predicted        number of target      total number   total number 
                as a         contacts possible in         of             of 
               contact         predicted subset:       contacts       contacts 
            percent  number    percent    number       in target    in prediction 
 CONTACTS:     0.0      0         0.0        0             0              0 
 
 
 
 CONSIDERED - explicitly provided contacts (with positive confidence) or 
              non contacts (with negative confidence) possible to evaluate 
 SEP      - Minimum separation between residues considered 
 NPC      - Number of contacts predicted correctly 
 PC(P)    - Percent of contacts predicted correctly from CONSIDERED in PREDICTION 
 PC(T)    - Percent of contacts predicted correctly from CONSIDERED in TARGET with SEP limit 
 PC(TT)   - Percent of contacts predicted correctly from TOTAL in TARGET with SEP limit 
 
                        CONSIDERED     CONSIDERED       TOTAL          TOTAL 
                      in PREDICTION    in TARGET    in PREDICTION    in TARGET 
 ALL RESIDUES USED          81              81            87            226 
 ALL CONTACTS (< 8.0A)     362             350           400           1130 
 
               in PREDICTION      Predicted correctly          Submitted as        in TARGET 
                CONSIDERED     NPC   PC(P)   PC(T)   PC(TT)    NOT  predicted   CONSIDERED  TOTAL  |   SEP 
 RES CONTACTS       362        273   75.41   78.00   24.16       0     0.00         350      1130  |   1-9999 
 RES CONTACTS       177        166   93.79   90.22   28.97       0     0.00         184       573  |   1-4    
 RES CONTACTS        22         15   68.18   65.22   25.86       0     0.00          23        58  |   5-8    
 RES CONTACTS       163         92   56.44   64.34   18.44       0     0.00         143       499  |   9-9999 
 
 
 
# WARNING! TARGET 1793 atoms, MODEL 1837 atoms, 1793 common with TARGET 
           Number of atoms possible to evaluate: 643 
 
MEASURES: 
 
 
ANGLES RMS : model <-> target 
 
 (MC: PHI+PSI) DIHED RMS:      ARMSMC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    60.51           63.5   148    33.1   447     ARMSMC  
     SECONDARY STRUCTURE . .    50.91           69.5    82    33.6   244     ARMSMC  
     SURFACE . . . . . . . .    71.12           51.9    81    35.5   228     ARMSMC  
     BURIED  . . . . . . . .    44.41           77.6    67    30.6   219     ARMSMC  
 (SC: CHI1) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    81.65           46.2    65    39.9   163     ARMSSC1 
     RELIABLE SIDE CHAINS  .    84.10           42.1    57    38.0   150     ARMSSC1 
     SECONDARY STRUCTURE . .    77.32           52.5    40    42.1    95     ARMSSC1 
     SURFACE . . . . . . . .    80.12           45.7    35    39.3    89     ARMSSC1 
     BURIED  . . . . . . . .    83.40           46.7    30    40.5    74     ARMSSC1 
 (SC: CHI2) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    66.60           51.1    45    39.5   114     ARMSSC2 
     RELIABLE SIDE CHAINS  .    63.46           53.7    41    44.6    92     ARMSSC2 
     SECONDARY STRUCTURE . .    66.59           50.0    26    41.9    62     ARMSSC2 
     SURFACE . . . . . . . .    62.06           41.7    24    38.7    62     ARMSSC2 
     BURIED  . . . . . . . .    71.44           61.9    21    40.4    52     ARMSSC2 
 (SC: CHI3) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    67.00           52.9    17    53.1    32     ARMSSC3 
     RELIABLE SIDE CHAINS  .    69.02           50.0    16    59.3    27     ARMSSC3 
     SECONDARY STRUCTURE . .    76.74           33.3     9    56.2    16     ARMSSC3 
     SURFACE . . . . . . . .    75.05           50.0    10    52.6    19     ARMSSC3 
     BURIED  . . . . . . . .    53.43           57.1     7    53.8    13     ARMSSC3 
 (SC: CHI4) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    92.55           25.0     8    88.9     9     ARMSSC4 
     RELIABLE SIDE CHAINS  .    92.55           25.0     8    88.9     9     ARMSSC4 
     SECONDARY STRUCTURE . .   102.30           20.0     5   100.0     5     ARMSSC4 
     SURFACE . . . . . . . .    89.09           33.3     6    85.7     7     ARMSSC4 
     BURIED  . . . . . . . .   102.23            0.0     2   100.0     2     ARMSSC4 
 
COORDINATES RMS : model <-> target 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   5.00): 
 FRAGMENT  1    3 - 89   81   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    81      3 - 89       3.24     3.24 
  LCS LOCAL_SCORE:            107.41 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   2.00): 
 FRAGMENT  1    3 - 89   81   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    63      3 - 65       2.00     3.38 
  LCS LOCAL_SCORE:             66.77 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   1.00): 
 FRAGMENT  1    3 - 89   81   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    24      3 - 26       0.87     3.57 
  LCS LOCAL_SCORE:             16.96 
 
 
 LCS                   LENGTH_OF_THE 
 LCS  RESIDUE  RESIDUE    CONTINUOUS  SECONDARY 
 LCS   NUMBER     NAME       SEGMENT  STRUCTURE   GDT_DATA_COLUMNS (PERCENT OF THE TARGET) 
 LCS       3       L    24   63   81       E        3  10  16  24  24  26  27  29  30  31  32  34  34  34  35  35  35  35  35  35  
 LCS       4       S    24   63   81       E        4  17  21  24  24  26  27  29  30  31  32  34  34  34  35  35  35  35  35  35  
 LCS       5       C    24   63   81       E        7  17  21  24  24  26  27  29  30  31  32  34  34  34  35  35  35  35  35  35  
 LCS       6       K    24   63   81       E       10  17  21  24  24  26  27  29  30  31  32  34  34  34  35  35  35  35  35  35  
 LCS       7       V    24   63   81       E       10  17  21  24  24  26  27  29  30  31  32  34  34  34  35  35  35  35  35  35  
 LCS       8       T    24   63   81       E       10  17  21  24  24  26  27  29  30  31  32  34  34  34  35  35  35  35  35  35  
 LCS       9       S    24   63   81       E       10  17  21  24  24  26  27  29  30  31  32  34  34  34  35  35  35  35  35  35  
 LCS      10       V    24   63   81       E       10  17  21  24  24  26  27  29  30  31  32  34  34  34  35  35  35  35  35  35  
 LCS      11       E    24   63   81       E        4  15  21  24  24  26  27  29  30  31  32  34  34  34  35  35  35  35  35  35  
 LCS      12       A    24   63   81       E        9  17  21  24  24  26  27  29  30  31  32  34  34  34  35  35  35  35  35  35  
 LCS      13       I    24   63   81       C        4  17  21  24  24  26  27  29  30  31  32  34  34  34  35  35  35  35  35  35  
 LCS      14       T    24   63   81       C        4  15  21  24  24  26  27  29  30  31  32  34  34  34  35  35  35  35  35  35  
 LCS      15       D    24   63   81       C        4  11  21  24  24  26  27  29  30  31  32  34  34  34  35  35  35  35  35  35  
 LCS      16       T    24   63   81       C        4  17  21  24  24  26  27  29  30  31  32  34  34  34  35  35  35  35  35  35  
 LCS      17       V    24   63   81       C        4  17  21  24  24  26  27  29  30  31  32  34  34  34  35  35  35  35  35  35  
 LCS      18       Y    24   63   81       E       10  17  21  24  24  26  27  29  30  31  32  34  34  34  35  35  35  35  35  35  
 LCS      19       R    24   63   81       E        4  15  21  24  24  26  27  29  30  31  32  34  34  34  35  35  35  35  35  35  
 LCS      20       V    24   63   81       E       10  17  21  24  24  26  27  29  30  31  32  34  34  34  35  35  35  35  35  35  
 LCS      21       R    24   63   81       E       10  17  21  24  24  26  27  29  30  31  32  34  34  34  35  35  35  35  35  35  
 LCS      22       I    24   63   81       E       10  17  21  24  24  26  27  29  30  31  32  34  34  34  35  35  35  35  35  35  
 LCS      23       V    24   63   81       E       10  17  21  24  24  26  27  29  30  31  32  34  34  34  35  35  35  35  35  35  
 LCS      24       P    24   63   81       E        3  17  21  24  24  26  27  29  30  31  32  34  34  34  35  35  35  35  35  35  
 LCS      25       D    24   63   81       C        2  11  21  24  24  26  27  29  30  31  32  34  34  34  35  35  35  35  35  35  
 LCS      26       A    24   63   81       C        2  11  21  24  24  26  27  29  30  31  32  34  34  34  35  35  35  35  35  35  
 LCS      27       A     3   63   81       C        1   1   1   4  11  24  27  28  30  31  32  34  34  34  35  35  35  35  35  35  
 LCS      28       F    12   63   81       C        1   3  18  24  24  26  27  29  30  31  32  34  34  34  35  35  35  35  35  35  
 LCS      29       S    12   63   81       C       10  17  21  24  24  26  27  29  30  31  32  34  34  34  35  35  35  35  35  35  
 LCS      30       F    12   63   81       C       10  17  21  24  24  26  27  29  30  31  32  34  34  34  35  35  35  35  35  35  
 LCS      31       R    12   63   81       C       10  17  21  24  24  26  27  29  30  31  32  34  34  34  35  35  35  35  35  35  
 LCS      32       A    12   63   81       C       10  17  21  24  24  26  27  29  30  31  32  34  34  34  35  35  35  35  35  35  
 LCS      33       G    12   63   81       C       10  17  21  24  24  26  27  29  30  31  32  34  34  34  35  35  35  35  35  35  
 LCS      34       Q    12   63   81       C       10  17  21  24  24  26  27  29  30  31  32  34  34  34  35  35  35  35  35  35  
 LCS      35       Y    12   63   81       E       10  17  21  24  24  26  27  29  30  31  32  34  34  34  35  35  35  35  35  35  
 LCS      36       L    12   63   81       E       10  17  21  24  24  26  27  29  30  31  32  34  34  34  35  35  35  35  35  35  
 LCS      37       M    12   63   81       E        8  17  21  24  24  26  27  29  30  31  32  34  34  34  35  35  35  35  35  35  
 LCS      38       V    12   63   81       E        5  16  21  24  24  26  27  29  30  31  32  34  34  34  35  35  35  35  35  35  
 LCS      39       V    12   63   81       E        1   7  17  24  24  26  27  29  30  31  32  34  34  34  35  35  35  35  35  35  
 LCS      40       M    12   63   81       C        1   5  16  24  24  26  27  29  30  31  32  34  34  34  35  35  35  35  35  35  
 LCS      41       D     4   63   81       C        0   2   8  17  24  26  27  29  30  31  32  34  34  34  35  35  35  35  35  35  
 LCS      42       E     3   63   81       C        1   1   3   4   5   7  15  19  24  29  31  32  33  34  35  35  35  35  35  35  
 LCS      43       R     8   63   81       C        1   2   3   6  17  24  27  29  30  31  32  34  34  34  35  35  35  35  35  35  
 LCS      44       D    14   63   81       C        2   6  16  24  24  26  27  29  30  31  32  34  34  34  35  35  35  35  35  35  
 LCS      45       K    14   63   81       E        3   7  19  24  24  26  27  29  30  31  32  34  34  34  35  35  35  35  35  35  
 LCS      46       R    14   63   81       E        8  17  21  24  24  26  27  29  30  31  32  34  34  34  35  35  35  35  35  35  
 LCS      47       P    14   63   81       E       10  17  21  24  24  26  27  29  30  31  32  34  34  34  35  35  35  35  35  35  
 LCS      48       F    14   63   81       E       10  17  21  24  24  26  27  29  30  31  32  34  34  34  35  35  35  35  35  35  
 LCS      49       S    14   63   81       E       10  17  21  24  24  26  27  29  30  31  32  34  34  34  35  35  35  35  35  35  
 LCS      50       M    14   63   81       C       10  17  21  24  24  26  27  29  30  31  32  34  34  34  35  35  35  35  35  35  
 LCS      51       A    14   63   81       C       10  17  21  24  24  26  27  29  30  31  32  34  34  34  35  35  35  35  35  35  
 LCS      52       S    14   63   81       C       10  17  21  24  24  26  27  29  30  31  32  34  34  34  35  35  35  35  35  35  
 LCS      53       T    14   63   81       C       10  17  21  24  24  26  27  29  30  31  32  34  34  34  35  35  35  35  35  35  
 LCS      54       P    14   63   81       C       10  17  21  24  24  26  27  29  30  31  32  34  34  34  35  35  35  35  35  35  
 LCS      55       D    14   63   81       C       10  17  21  24  24  26  27  29  30  31  32  34  34  34  35  35  35  35  35  35  
 LCS      56       E    14   63   81       C       10  17  21  24  24  26  27  29  30  31  32  34  34  34  35  35  35  35  35  35  
 LCS      57       K    14   63   81       C        1   3  10  21  24  26  27  29  30  31  32  34  34  34  35  35  35  35  35  35  
 LCS      58       G     5   63   81       C        1   2   3   5  14  23  25  29  30  31  32  34  34  34  35  35  35  35  35  35  
 LCS      59       F     4   63   81       C        0   2   6  15  20  26  27  29  30  31  32  34  34  34  35  35  35  35  35  35  
 LCS      60       I     6   63   81       E        5  16  21  24  24  26  27  29  30  31  32  34  34  34  35  35  35  35  35  35  
 LCS      61       E     6   63   81       E        5  17  21  24  24  26  27  29  30  31  32  34  34  34  35  35  35  35  35  35  
 LCS      62       L     6   63   81       E       10  17  21  24  24  26  27  29  30  31  32  34  34  34  35  35  35  35  35  35  
 LCS      63       H     6   63   81       E       10  17  21  24  24  26  27  29  30  31  32  34  34  34  35  35  35  35  35  35  
 LCS      64       I     6   63   81       E        6  16  21  24  24  26  27  29  30  31  32  34  34  34  35  35  35  35  35  35  
 LCS      65       G     6   63   81       C        6  17  21  24  24  26  27  29  30  31  32  34  34  34  35  35  35  35  35  35  
 LCS    BREAK 
 LCS      72       Y     7   38   81       C        1   3   3  16  24  26  27  29  30  31  32  34  34  34  35  35  35  35  35  35  
 LCS      73       A     7   24   81       C        2   3  11  13  15  23  27  29  30  31  32  34  34  34  35  35  35  35  35  35  
 LCS      74       K     7    8   81       H        2   3   3   3  15  23  27  29  30  31  32  34  34  34  35  35  35  35  35  35  
 LCS      75       A     7    8   81       H        2   3   3   7  11  21  26  29  30  31  32  34  34  34  35  35  35  35  35  35  
 LCS      76       V     7    8   81       H        2   3   3   3   6  11  26  29  30  31  32  34  34  34  35  35  35  35  35  35  
 LCS      77       M     7    8   81       H        2   3   5  13  15  25  27  29  30  31  32  34  34  34  35  35  35  35  35  35  
 LCS      78       D     7    8   81       H        2   3   6  10  22  26  27  29  30  31  32  34  34  34  35  35  35  35  35  35  
 LCS      79       R     4    8   81       H        1   1   1   3   6  11  16  25  30  31  32  33  34  34  35  35  35  35  35  35  
 LCS      80       I     4    5   81       H        1   1   1   2   5   7   8  26  30  31  32  34  34  34  35  35  35  35  35  35  
 LCS      81       L     4    5   81       H        1   1   1   3   8   9  11  15  25  28  32  34  34  34  35  35  35  35  35  35  
 LCS      82       K     4    8   81       H        1   1   2   4  11  20  26  29  30  31  32  34  34  34  35  35  35  35  35  35  
 LCS      83       D     3    8   81       H        1   4   5   6  11  23  26  29  30  31  32  34  34  34  35  35  35  35  35  35  
 LCS      84       H     6    8   81       C        1   2   2   4   6   7  10  13  26  28  31  32  34  34  35  35  35  35  35  35  
 LCS      85       Q     6    8   81       E        1   2   2   4   6   9  13  24  26  28  31  33  34  34  35  35  35  35  35  35  
 LCS      86       I     6    8   81       E        1   2   2   2   7  11  13  20  29  30  32  34  34  34  35  35  35  35  35  35  
 LCS      87       V     6    8   81       E        1   2   2   2   7   9  13  19  29  30  32  34  34  34  35  35  35  35  35  35  
 LCS      88       V     6    8   81       E        1   2   2   2   2   3   3   3  22  30  32  34  34  34  35  35  35  35  35  35  
 LCS      89       D     6    8   81       E        0   1   2   2   2   3   3  24  26  30  32  34  34  34  35  35  35  35  35  35  
 LCS TOTAL_SCORE (RMS CUTOFF   1.00):   2.14 
 
 NUMBER_OF_CA_Tg:  226      NUMBER_OF_CA_Pr:   81      PERCENT_OF_CA:  35.84  
 
GLOBAL_DISTANCE_TEST (the largest set of residues under DISTANCE_CUTOFF (using LCS results)): 
 GDT DISTANCE_CUTOFF     0.50    1.00    1.50    2.00    2.50    3.00    3.50    4.00    4.50    5.00    5.50    6.00    6.50    7.00    7.50    8.00    8.50    9.00    9.50   10.00  
 GDT NUMBER_OF_CA_max      24      40      49      55      56      59      63      66      70      71      73      77      79      79      81      81      81      81      81      81  
 GDT PERCENT_OF_CA_Pr   29.63   49.38   60.49   67.90   69.14   72.84   77.78   81.48   86.42   87.65   90.12   95.06   97.53   97.53  100.00  100.00  100.00  100.00  100.00  100.00 
 GDT PERCENT_OF_CA_Tg   10.62   17.70   21.68   24.34   24.78   26.11   27.88   29.20   30.97   31.42   32.30   34.07   34.96   34.96   35.84   35.84   35.84   35.84   35.84   35.84 
 GDT FRAGMENT: Beg-End   7-63    5-65    5-65    4-65    3-65    3-72    3-78    3-78    3-83    3-83    3-83    3-89    3-89    3-89    3-89    3-89    3-89    3-89    3-89    3-89  
 GDT RMS_LOCAL           0.29    0.59    0.85    1.16    1.18    1.43    1.77    1.94    2.24    2.28    2.50    2.84    3.03    3.06    3.24    3.24    3.24    3.24    3.24    3.24 
 GDT RMS_ALL_CA          3.56    3.52    3.51    3.39    3.40    3.36    3.31    3.31    3.27    3.27    3.28    3.25    3.25    3.25    3.24    3.24    3.24    3.24    3.24    3.24 
 
 
 TEST (CA)  RMS =   3.24               (Number of atoms:   81) 
 
 (CA)  RMS:                   CRMSCA         NP     PP     TN 
     ALL . . . . . . . . . .    3.24         81    35.8   226     CRMSCA  
     CRN = ALL/NP  . . . . .    0.0400                            CRMSCA  
     SECONDARY STRUCTURE . .    3.38         47    38.5   122     CRMSCA  
     SURFACE . . . . . . . .    3.63         44    38.3   115     CRMSCA  
     BURIED  . . . . . . . .    2.70         37    33.3   111     CRMSCA  
 (MC)  RMS:                   CRMSMC         NP     PP     TN 
     ALL . . . . . . . . . .    3.34        402    36.1  1114     CRMSMC  
     SECONDARY STRUCTURE . .    3.44        235    38.7   607     CRMSMC  
     SURFACE . . . . . . . .    3.79        218    38.4   567     CRMSMC  
     BURIED  . . . . . . . .    2.70        184    33.6   547     CRMSMC  
 (SC)  RMS:                   CRMSSC         NP     PP     TN 
     ALL . . . . . . . . . .    5.62        319    35.9   889     CRMSSC  
     RELIABLE SIDE CHAINS  .    5.55        279    36.2   771     CRMSSC  
     SECONDARY STRUCTURE . .    5.27        194    40.7   477     CRMSSC  
     SURFACE . . . . . . . .    6.70        177    38.1   465     CRMSSC  
     BURIED  . . . . . . . .    3.88        142    33.5   424     CRMSSC  
 (ALL) RMS:                   CRMSALL        NP     PP     TN 
     ALL . . . . . . . . . .    4.55        643    35.9  1793     CRMSALL 
     SECONDARY STRUCTURE . .    4.40        382    39.6   965     CRMSALL 
     SURFACE . . . . . . . .    5.38        353    38.2   925     CRMSALL 
     BURIED  . . . . . . . .    3.27        290    33.4   868     CRMSALL 
 
Accuracy of estimates of atomic coordinate errors: model <-> target 
 
 (CA)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    2.142      0.621       0.311     81    35.8   226     ERRCA  
     SECONDARY STRUCTURE . .    2.258      0.620       0.310     47    38.5   122     ERRCA  
     SURFACE . . . . . . . .    2.495      0.655       0.328     44    38.3   115     ERRCA  
     BURIED  . . . . . . . .    1.723      0.581       0.290     37    33.3   111     ERRCA  
 (MC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    2.209      0.625       0.313    402    36.1  1114     ERRMC  
     SECONDARY STRUCTURE . .    2.287      0.621       0.310    235    38.7   607     ERRMC  
     SURFACE . . . . . . . .    2.622      0.660       0.330    218    38.4   567     ERRMC  
     BURIED  . . . . . . . .    1.719      0.583       0.291    184    33.6   547     ERRMC  
 (SC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    4.038      0.724       0.362    319    35.9   889     ERRSC  
     RELIABLE SIDE CHAINS  .    3.977      0.720       0.360    279    36.2   771     ERRSC  
     SECONDARY STRUCTURE . .    3.761      0.717       0.358    194    40.7   477     ERRSC  
     SURFACE . . . . . . . .    5.086      0.764       0.382    177    38.1   465     ERRSC  
     BURIED  . . . . . . . .    2.730      0.675       0.338    142    33.5   424     ERRSC  
 (ALL) ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    3.059      0.671       0.336    643    35.9  1793     ERRALL 
     SECONDARY STRUCTURE . .    2.975      0.665       0.332    382    39.6   965     ERRALL 
     SURFACE . . . . . . . .    3.790      0.710       0.355    353    38.2   925     ERRALL 
     BURIED  . . . . . . . .    2.169      0.625       0.312    290    33.4   868     ERRALL 
 
 
 
DISTANCES: Percent of total atoms where distance (target <-> model) in global 
           superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms 
            D < 1     D < 2     D < 3     D < 5    D < 10      NP      TN 
CA  (N)         7        48        57        69        81      81     226   DISTCA 
CA  (P)      3.10     21.24     25.22     30.53     35.84             226   DISTCA 
CA  (RMS)    0.86      1.36      1.54      2.18      3.24                   DISTCA 
 
ALL (N)        44       290       380       480       618     643    1793   DISTALL 
ALL (P)      2.45     16.17     21.19     26.77     34.47            1793   DISTALL 
ALL (RMS)    0.81      1.42      1.71      2.37      3.92                   DISTALL 
 
 
 
 
END of the results output 
