 
####################################################### 
#                                                     # 
#                        ACE                          # 
#                                                     # 
#        Ab-initio protein structure prediction       # 
#                         &                           # 
#               Comparative modeling                  # 
#                                                     # 
#                     Evaluator                       # 
#                                                     # 
#                ----------------- 11/1998            # 
#                                                     # 
#                         by                          # 
#           Adam Zemla & Ceslovas Venclovas           # 
#                                                     # 
#         Protein Structure Prediction Center         # 
#      Lawrence Livermore National Laboratory, CA     # 
#                                                     # 
####################################################### 
########################## 
#                        # 
#    ACE parameters:     # 
#                        # 
########################## 
# 
# MEASURES: 
# 
# For AB: 0 3 9 13 14 
# For CM: 0 1 2 3 6 7 8 9 10 11 12 13 14 18 
# 
ARMSMC  0 1 2     7 8 9    11 12 13 14 18 
ARMSSC  0 1 2 3 6 7 8 9    11 12 13 14 18 
# 
CRMSCA  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSMC  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSSC  0 1 2 3 6     9    11 12 13 14 18 
CRMSALL 0 1 2     7 8 9    11 12 13 14 18 
# 
D-E_CA  0 1 2     7 8 9    11 12 13 14 18 
D-E_MC  0 1 2     7 8 9    11 12 13 14 18 
D-E_SC  0 1 2 3 6 7 8 9    11 12 13 14 18 
D-E_ALL 0 1 2     7 8 9    11 12 13 14 18 
# 
# Output parameters 
# 
DIHED-OUTPUT        0         #    1 - ON, 0 - OFF 
RES-CONTACTS        0         #    1 - ON, 0 - OFF 
SS-OUTPUT           1         #    1 - ON, 0 - OFF 
PHI-PSI             0         #    1 - SEPARATELY, 0 - NO  
# 
# Calculation parameters 
# 
SOV-METHOD          1         #    0 - SOV 94,  1 - SOV 
# 
TEMP-FACTOR         30.0      #    Target structure temperature factor cutoff 
ACCESS-CUTOFF       0.20      #    Solvent accessibility cutoff   
ANGLES-CORRECT      30.0      #    target-model  (diff < 30.0)    
DSSP-HELIX          6         #    Secondary Structure subset: helix cutoff  
DSSP-STRAND         3         #    Secondary Structure subset: strand cutoff 
ROTAMERS-LIMIT      30.0      #    target-parent (diff > 30.0) 
ROTATION-MATRIX     0         #    1 - ON, 0 - OFF   
SC-SWAPPING         1         #    1 - ON, 0 - OFF    
SEP-CONTACTS        1         #    Separation interval along the chain 
RESIDUE-CONTACTS    8.0       #    Contact definition between two C-beta atoms 
# 
CRMS-METHOD         1         #    0 - ALL, 1 - CA, 2 - MC+CB, 3 - CA (iter)  
ITER-CUTOFF         2.5       #    DISTANCE cutoff (for CA (iter))  
LCS_GDT             1         #    LCS and GDT calculations (1 - ON, 0 - OFF) 
########################## 
#                        # 
#      ACE results:      # 
#                        # 
########################## 
 
 
 
# WARNING! The number of residues in SS section: 130 , MODEL 130 , TARGET 226 
#          The number of residues possible to evaluate: 130 
 
 
 SECONDARY STRUCTURE PREDICTION: 
       NUM    RES   SS   Prediction   Probability 
 SSP    91     P     E     C             1.00 
 SSP    92     H     E     C             1.00 
 SSP    93     G     C     C             1.00 
 SSP    94     E     C     C             1.00 
 SSP    95     A     C     C             1.00 
 SSP    96     W     C     C             1.00 
 SSP    97     L     C     C             1.00 
 SSP    98     R     C     C             1.00 
 SSP    99     D     C     C             1.00 
 SSP   100     D     C     C             1.00 
 SSP   101     E     C     C             1.00 
 SSP   102     E     C     C             1.00 
 SSP   103     R     C     C             1.00 
 SSP   104     P     C     C             1.00 
 SSP   105     M     E     E             1.00 
 SSP   106     I     E     E             1.00 
 SSP   107     L     E     E             1.00 
 SSP   108     I     E     E             1.00 
 SSP   109     A     E     C             1.00 
 SSP   110     G     E     C             1.00 
 SSP   111     G     C     H             1.00 
 SSP   112     T     C     H             1.00 
 SSP   113     G     C     H             1.00 
 SSP   114     F     H     H             1.00 
 SSP   115     S     H     H             1.00 
 SSP   116     Y     H     H             1.00 
 SSP   117     A     H     H             1.00 
 SSP   118     R     H     H             1.00 
 SSP   119     S     H     H             1.00 
 SSP   120     I     H     H             1.00 
 SSP   121     L     H     H             1.00 
 SSP  BREAK 
 SSP   123     T     H     H             1.00 
 SSP   124     A     H     H             1.00 
 SSP   125     L     H     H             1.00 
 SSP   126     A     H     H             1.00 
 SSP   127     R     H     H             1.00 
 SSP   128     N     C     C             1.00 
 SSP   129     P     C     C             1.00 
 SSP   130     N     C     C             1.00 
 SSP   131     R     C     C             1.00 
 SSP   132     D     C     C             1.00 
 SSP   133     I     E     E             1.00 
 SSP   134     T     E     E             1.00 
 SSP   135     I     E     E             1.00 
 SSP   136     Y     E     E             1.00 
 SSP   137     W     E     C             1.00 
 SSP  BREAK 
 SSP   139     G     E     C             1.00 
 SSP   140     R     C     C             1.00 
 SSP   141     E     C     C             1.00 
 SSP   142     E     H     C             1.00 
 SSP   143     Q     H     C             1.00 
 SSP   144     H     H     C             1.00 
 SSP   145     L     C     C             1.00 
 SSP   146     Y     C     C             1.00 
 SSP   147     D     C     H             1.00 
 SSP   148     L     H     H             1.00 
 SSP  BREAK 
 SSP   150     E     H     H             1.00 
 SSP   151     L     H     H             1.00 
 SSP   152     E     H     H             1.00 
 SSP   153     A     H     C             1.00 
 SSP   154     L     H     C             1.00 
 SSP   155     S     H     C             1.00 
 SSP   156     L     H     C             1.00 
 SSP   157     K     H     C             1.00 
 SSP   158     H     C     C             1.00 
 SSP   159     P     C     C             1.00 
 SSP   160     G     C     C             1.00 
 SSP   161     L     E     E             1.00 
 SSP   162     Q     E     E             1.00 
 SSP   163     V     E     E             1.00 
 SSP   164     V     E     E             1.00 
 SSP   165     P     E     C             1.00 
 SSP   166     V     E     C             1.00 
 SSP   167     V     E     C             1.00 
 SSP   168     E     C     C             1.00 
 SSP   169     Q     C     C             1.00 
 SSP   170     P     C     C             1.00 
 SSP   171     E     C     C             1.00 
 SSP   172     A     C     C             1.00 
 SSP  BREAK 
 SSP   174     W     C     C             1.00 
 SSP  BREAK 
 SSP   176     G     C     C             1.00 
 SSP   177     R     E     C             1.00 
 SSP   178     T     E     C             1.00 
 SSP   179     G     C     C             1.00 
 SSP   180     T     C     C             1.00 
 SSP   181     V     H     C             1.00 
 SSP   182     L     H     C             1.00 
 SSP   183     T     H     C             1.00 
 SSP   184     A     H     H             1.00 
 SSP   185     V     H     H             1.00 
 SSP   186     L     H     H             1.00 
 SSP   187     Q     H     H             1.00 
 SSP   188     D     H     H             1.00 
 SSP   189     H     C     H             1.00 
 SSP   190     G     C     C             1.00 
 SSP   191     T     C     C             1.00 
 SSP   192     L     C     C             1.00 
 SSP   193     A     C     H             1.00 
 SSP   194     E     C     H             1.00 
 SSP   195     H     C     H             1.00 
 SSP   196     D     E     C             1.00 
 SSP   197     I     E     C             1.00 
 SSP   198     Y     E     E             1.00 
 SSP   199     I     E     E             1.00 
 SSP   200     A     E     C             1.00 
 SSP   201     G     C     C             1.00 
 SSP   202     R     C     C             1.00 
 SSP   203     F     H     C             1.00 
 SSP   204     E     H     C             1.00 
 SSP   205     M     H     C             1.00 
 SSP  BREAK 
 SSP   208     I     H     C             1.00 
 SSP   209     A     H     C             1.00 
 SSP  BREAK 
 SSP   211     D     H     C             1.00 
 SSP   212     L     H     C             1.00 
 SSP   213     F     H     H             1.00 
 SSP   214     C     H     H             1.00 
 SSP   215     S     H     H             1.00 
 SSP   216     E     H     H             1.00 
 SSP   217     R     C     H             1.00 
 SSP  BREAK 
 SSP   219     A     C     C             1.00 
 SSP   220     R     C     C             1.00 
 SSP   221     E     H     C             1.00 
 SSP   222     D     H     C             1.00 
 SSP  BREAK 
 SSP   224     L     E     H             1.00 
 SSP  BREAK 
 SSP   226     G     C     H             1.00 
 SSP   227     D     C     H             1.00 
 SSP   228     A     H     E             1.00 
 SSP   229     F     H     E             1.00 
 SSP   230     A     H     C             1.00 
 SSP   231     F     H     C             1.00 
 SSP  BREAK 
 
 NP      - Number of predicted residues 
 PP      - Percent of predicted residues 
 Q3      - Residues predicted correctly (H, E, C) 
 Qhelix  - Residues predicted correctly (HELIX) 
 Qstrand - Residues predicted correctly (STRAND) 
 Qcoil   - Residues predicted correctly (COIL) 
 SOV     - Segment overlap quantity 
 
                     Q3      Qhelix   Qstrand   Qcoil      PP 
 Qindex              61.5      52.0     48.3     78.4     57.5 
 
                     ALL      HELIX    STRAND    COIL      PP 
 SOV observed        63.7      59.5     69.0     64.7     57.5 
 
           Considered    Percent predicted   Percent predicted 
            segments        correctly         as wrong type 
 SEG           14              57.1               7.1 
 
         Number of wrong    Number of wrong 
             breaks             joins 
 B/J            0                 0 
 
  CONFIDENCE (P)     Average     NP    PP/BIN     Q3 
 BIN  0.90 - 1.00      1.00     130    100.0     61.5 
 
 BIN  0.00 - 1.00      1.00     130    100.0     61.5 
 
 
 
 
              predicted        number of target      total number   total number 
                as a         contacts possible in         of             of 
               contact         predicted subset:       contacts       contacts 
            percent  number    percent    number       in target    in prediction 
 CONTACTS:     0.0      0         0.0        0             0              0 
 
 
# WARNING! The number of residues with CB atom coordinates: MODEL 0 , TARGET 210 
 
# WARNING! TARGET 1793 atoms, MODEL 1325 atoms, 1281 common with TARGET 
           Number of atoms possible to evaluate: 520 
 
MEASURES: 
 
 
ANGLES RMS : model <-> target 
 
 (MC: PHI+PSI) DIHED RMS:      ARMSMC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    68.83           63.7   190    42.5   447     ARMSMC  
     SECONDARY STRUCTURE . .    65.89           66.0   103    42.2   244     ARMSMC  
     SURFACE . . . . . . . .    64.57           63.4    93    40.8   228     ARMSMC  
     BURIED  . . . . . . . .    72.68           63.9    97    44.3   219     ARMSMC  
 (SC: CHI1) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0   163     ARMSSC1 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0   150     ARMSSC1 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    95     ARMSSC1 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    89     ARMSSC1 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    74     ARMSSC1 
 (SC: CHI2) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0   114     ARMSSC2 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    92     ARMSSC2 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    62     ARMSSC2 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    62     ARMSSC2 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    52     ARMSSC2 
 (SC: CHI3) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    32     ARMSSC3 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    27     ARMSSC3 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    16     ARMSSC3 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    19     ARMSSC3 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    13     ARMSSC3 
 (SC: CHI4) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0     9     ARMSSC4 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0     9     ARMSSC4 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0     5     ARMSSC4 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0     7     ARMSSC4 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     2     ARMSSC4 
 
COORDINATES RMS : model <-> target 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   5.00): 
 FRAGMENT  1   91 - 121  31   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    31     91 - 121      2.37     2.37 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  2  123 - 137  15   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    15    123 - 137      2.78     2.78 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  3  139 - 148  10   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    10    139 - 148      2.64     2.64 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  4  150 - 172  23   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    23    150 - 172      2.22     2.22 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  5  176 - 205  30   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    30    176 - 205      4.64     4.64 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  6  211 - 217  7    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     7    211 - 217      1.71     1.71 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  7  219 - 222  4    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     4    219 - 222      0.87     0.87 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  8  226 - 231  6    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     6    226 - 231      2.83     2.83 
  LCS LOCAL_SCORE:            100.00 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   2.00): 
 FRAGMENT  1   91 - 121  31   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    21    101 - 121      1.99     2.71 
  LCS LOCAL_SCORE:             56.30 
 
 FRAGMENT  2  123 - 137  15   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     8    123 - 130      1.44    10.68 
  LCS LOCAL_SCORE:             50.22 
 
 FRAGMENT  3  139 - 148  10   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     6    141 - 146      1.98     5.21 
  LCS LOCAL_SCORE:             52.00 
 
 FRAGMENT  4  150 - 172  23   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    20    150 - 169      1.85     2.47 
  LONGEST_CONTINUOUS_SEGMENT    20    151 - 170      1.96     2.30 
  LONGEST_CONTINUOUS_SEGMENT    20    152 - 171      1.88     2.27 
  LONGEST_CONTINUOUS_SEGMENT    20    153 - 172      1.82     2.29 
  LCS LOCAL_SCORE:             86.96 
 
 FRAGMENT  5  176 - 205  30   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    10    181 - 190      1.76    13.19 
  LONGEST_CONTINUOUS_SEGMENT    10    182 - 191      1.98    12.24 
  LCS LOCAL_SCORE:             26.56 
 
 FRAGMENT  6  211 - 217  7    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     7    211 - 217      1.71     1.71 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  7  219 - 222  4    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     4    219 - 222      0.87     0.87 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  8  226 - 231  6    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     4    226 - 229      0.85     4.34 
  LCS LOCAL_SCORE:             61.11 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   1.00): 
 FRAGMENT  1   91 - 121  31   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    18    104 - 121      0.80     2.80 
  LCS LOCAL_SCORE:             41.52 
 
 FRAGMENT  2  123 - 137  15   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     6    123 - 128      0.35    10.99 
  LONGEST_CONTINUOUS_SEGMENT     6    132 - 137      0.37     3.37 
  LCS LOCAL_SCORE:             35.56 
 
 FRAGMENT  3  139 - 148  10   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     4    141 - 144      0.19     6.33 
  LCS LOCAL_SCORE:             28.00 
 
 FRAGMENT  4  150 - 172  23   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    15    154 - 168      0.96     2.60 
  LCS LOCAL_SCORE:             49.34 
 
 FRAGMENT  5  176 - 205  30   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     9    182 - 190      0.80    14.95 
  LCS LOCAL_SCORE:             17.78 
 
 FRAGMENT  6  211 - 217  7    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     6    212 - 217      0.98     2.19 
  LCS LOCAL_SCORE:             79.59 
 
 FRAGMENT  7  219 - 222  4    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     4    219 - 222      0.87     0.87 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  8  226 - 231  6    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     4    226 - 229      0.85     4.34 
  LCS LOCAL_SCORE:             61.11 
 
 
 LCS                   LENGTH_OF_THE 
 LCS  RESIDUE  RESIDUE    CONTINUOUS  SECONDARY 
 LCS   NUMBER     NAME       SEGMENT  STRUCTURE   GDT_DATA_COLUMNS (PERCENT OF THE TARGET) 
 LCS    BREAK 
 LCS      91       P     7   10   31       E        6  15  20  21  23  27  32  37  41  42  46  47  51  53  54  55  55  56  56  56  
 LCS      92       H     7   10   31       E        6  15  20  21  23  27  32  37  41  42  46  47  51  53  54  55  55  56  56  56  
 LCS      93       G     7   10   31       C        6  15  20  21  23  27  32  37  41  42  46  47  51  53  54  55  55  56  56  56  
 LCS      94       E     7   10   31       C        4  15  20  21  23  27  32  37  41  42  46  47  51  53  54  55  55  56  56  56  
 LCS      95       A     7   10   31       C        1   3  11  18  23  27  32  37  41  42  46  47  51  53  54  55  55  56  56  56  
 LCS      96       W     7   10   31       C        1   2   3   6  23  27  32  37  41  42  46  47  51  53  54  55  55  56  56  56  
 LCS      97       L     7   10   31       C        1   2   4  17  23  27  32  37  41  42  46  47  51  53  54  55  55  56  56  56  
 LCS      98       R     5   10   31       C        1   1   3   6   8  17  24  33  36  42  46  47  51  53  54  55  55  56  56  56  
 LCS      99       D     5   10   31       C        1   1   3   8  13  22  27  33  40  42  46  47  51  53  54  55  55  56  56  56  
 LCS     100       D     5   10   31       C        1   1   2   5   8  17  26  33  36  38  46  47  51  53  54  55  55  56  56  56  
 LCS     101       E     3   21   31       C        1   1   9  18  22  27  32  37  41  42  46  47  51  53  54  55  55  56  56  56  
 LCS     102       E     3   21   31       C        1   1   1   1   4   6  14  18  27  33  42  45  47  50  54  55  55  56  56  56  
 LCS     103       R     5   21   31       C        0   1  10  14  23  27  32  37  41  42  46  47  51  53  54  55  55  56  56  56  
 LCS     104       P    18   21   31       C        2  14  20  21  23  27  32  37  41  42  46  47  51  53  54  55  55  56  56  56  
 LCS     105       M    18   21   31       E        3  15  20  21  23  27  32  37  41  42  46  47  51  53  54  55  55  56  56  56  
 LCS     106       I    18   21   31       E        6  15  20  21  23  27  32  37  41  42  46  47  51  53  54  55  55  56  56  56  
 LCS     107       L    18   21   31       E        3  11  20  21  23  27  32  37  41  42  46  47  51  53  54  55  55  56  56  56  
 LCS     108       I    18   21   31       E        3  11  20  21  23  27  32  37  41  42  46  47  51  53  54  55  55  56  56  56  
 LCS     109       A    18   21   31       E        5  15  20  21  23  27  32  37  41  42  46  47  51  53  54  55  55  56  56  56  
 LCS     110       G    18   21   31       E        3  15  20  21  23  27  32  37  41  42  46  47  51  53  54  55  55  56  56  56  
 LCS     111       G    18   21   31       C        3  14  20  21  23  27  32  37  41  42  46  47  51  53  54  55  55  56  56  56  
 LCS     112       T    18   21   31       C        3  14  20  21  23  27  32  37  41  42  46  47  51  53  54  55  55  56  56  56  
 LCS     113       G    18   21   31       C        6  15  20  21  23  27  32  37  41  42  46  47  51  53  54  55  55  56  56  56  
 LCS     114       F    18   21   31       H        6  15  20  21  23  27  32  37  41  42  46  47  51  53  54  55  55  56  56  56  
 LCS     115       S    18   21   31       H        6  15  20  21  23  27  32  37  41  42  46  47  51  53  54  55  55  56  56  56  
 LCS     116       Y    18   21   31       H        6  15  20  21  23  27  32  37  41  42  46  47  51  53  54  55  55  56  56  56  
 LCS     117       A    18   21   31       H        6  15  20  21  23  27  32  37  41  42  46  47  51  53  54  55  55  56  56  56  
 LCS     118       R    18   21   31       H        6  15  20  21  23  27  32  37  41  42  46  47  51  53  54  55  55  56  56  56  
 LCS     119       S    18   21   31       H        6  15  20  21  23  27  32  37  41  42  46  47  51  53  54  55  55  56  56  56  
 LCS     120       I    18   21   31       H        4  15  20  21  23  27  32  37  41  42  46  47  51  53  54  55  55  56  56  56  
 LCS     121       L    18   21   31       H        6  15  20  21  23  27  32  37  41  42  46  47  51  53  54  55  55  56  56  56  
 LCS     122       L     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     123       T     6    8   15       H        2   2   2   3   5  21  27  36  41  42  46  47  51  53  54  55  55  56  56  56  
 LCS     124       A     6    8   15       H        2   2   2  13  18  24  32  37  41  42  46  47  51  53  54  55  55  56  56  56  
 LCS     125       L     6    8   15       H        2   6   9  18  23  27  32  37  41  42  46  47  51  53  54  55  55  56  56  56  
 LCS     126       A     6    8   15       H        2   2   2   3   5  22  30  36  41  42  46  47  51  53  54  55  55  56  56  56  
 LCS     127       R     6    8   15       H        2   2   2   3  13  17  25  30  36  39  46  47  51  53  54  55  55  56  56  56  
 LCS     128       N     6    8   15       C        2   2   2   3  18  25  32  37  41  42  46  47  51  53  54  55  55  56  56  56  
 LCS     129       P     4    8   15       C        1   1   2   2   4   6  14  37  41  42  46  47  51  53  54  55  55  56  56  56  
 LCS     130       N     4    8   15       C        1   1   2   3   4   5   8  11  14  16  42  45  47  52  54  55  55  56  56  56  
 LCS     131       R     0    7   15       C        0   0   0   1   6  23  32  37  41  42  46  47  51  53  54  55  55  56  56  56  
 LCS     132       D     6    7   15       C        2  10  20  21  23  27  32  37  41  42  46  47  51  53  54  55  55  56  56  56  
 LCS     133       I     6    7   15       E        2  10  20  21  23  27  32  37  41  42  46  47  51  53  54  55  55  56  56  56  
 LCS     134       T     6    7   15       E        6  15  20  21  23  27  32  37  41  42  46  47  51  53  54  55  55  56  56  56  
 LCS     135       I     6    7   15       E        6  15  20  21  23  27  32  37  41  42  46  47  51  53  54  55  55  56  56  56  
 LCS     136       Y     6    7   15       E        3  14  20  21  23  27  32  37  41  42  46  47  51  53  54  55  55  56  56  56  
 LCS     137       W     6    7   15       E        5  15  20  21  23  27  32  37  41  42  46  47  51  53  54  55  55  56  56  56  
 LCS     138       G     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     139       G     0    4   10       E        6  15  20  21  23  27  32  37  41  42  46  47  51  53  54  55  55  56  56  56  
 LCS     140       R     0    4   10       C        6  15  20  21  23  27  32  37  41  42  46  47  51  53  54  55  55  56  56  56  
 LCS     141       E     4    6   10       C        1   1   2  17  21  26  31  37  41  42  46  47  51  53  54  55  55  56  56  56  
 LCS     142       E     4    6   10       H        1   1   2   2   8  12  22  37  41  42  46  47  51  53  54  55  55  56  56  56  
 LCS     143       Q     4    6   10       H        1   2   8  14  20  25  32  37  41  42  46  47  51  53  54  55  55  56  56  56  
 LCS     144       H     4    6   10       H        1   1   6  18  23  27  32  37  41  42  46  47  51  53  54  55  55  56  56  56  
 LCS     145       L     3    6   10       C        1   1   2   6   8  13  31  37  41  42  46  47  51  53  54  55  55  56  56  56  
 LCS     146       Y     3    6   10       C        1   3   7   8  11  22  26  37  41  42  46  47  51  53  54  55  55  56  56  56  
 LCS     147       D     3    4   10       C        1   7  16  21  23  27  32  37  41  42  46  47  51  53  54  55  55  56  56  56  
 LCS     148       L     3    4   10       H        1   1   1   2   2   3  13  36  41  42  46  47  51  53  54  55  55  56  56  56  
 LCS     149       C     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     150       E     3   20   23       H        1   1   1   4  18  25  32  37  41  42  46  47  51  53  54  55  55  56  56  56  
 LCS     151       L     4   20   23       H        1   1   1   2   5   7  28  37  41  42  46  47  51  53  54  55  55  56  56  56  
 LCS     152       E     4   20   23       H        1   1   1   5   8  17  20  31  36  42  46  47  51  53  54  55  55  56  56  56  
 LCS     153       A     6   20   23       H        1   2   3  11  22  26  32  37  41  42  46  47  51  53  54  55  55  56  56  56  
 LCS     154       L    15   20   23       H        3  15  20  21  23  27  32  37  41  42  46  47  51  53  54  55  55  56  56  56  
 LCS     155       S    15   20   23       H        3  15  20  21  23  27  32  37  41  42  46  47  51  53  54  55  55  56  56  56  
 LCS     156       L    15   20   23       H        2  10  20  21  23  27  32  37  41  42  46  47  51  53  54  55  55  56  56  56  
 LCS     157       K    15   20   23       H        2  13  20  21  23  27  32  37  41  42  46  47  51  53  54  55  55  56  56  56  
 LCS     158       H    15   20   23       C        2  15  20  21  23  27  32  37  41  42  46  47  51  53  54  55  55  56  56  56  
 LCS     159       P    15   20   23       C        1   1   4   8  22  26  32  37  41  42  46  47  51  53  54  55  55  56  56  56  
 LCS     160       G    15   20   23       C        2   6  15  21  23  27  32  37  41  42  46  47  51  53  54  55  55  56  56  56  
 LCS     161       L    15   20   23       E        3  15  20  21  23  27  32  37  41  42  46  47  51  53  54  55  55  56  56  56  
 LCS     162       Q    15   20   23       E        3  15  20  21  23  27  32  37  41  42  46  47  51  53  54  55  55  56  56  56  
 LCS     163       V    15   20   23       E        6  15  20  21  23  27  32  37  41  42  46  47  51  53  54  55  55  56  56  56  
 LCS     164       V    15   20   23       E        5  15  20  21  23  27  32  37  41  42  46  47  51  53  54  55  55  56  56  56  
 LCS     165       P    15   20   23       E        6  15  20  21  23  27  32  37  41  42  46  47  51  53  54  55  55  56  56  56  
 LCS     166       V    15   20   23       E        3  15  20  21  23  27  32  37  41  42  46  47  51  53  54  55  55  56  56  56  
 LCS     167       V    15   20   23       E        6  15  20  21  23  27  32  37  41  42  46  47  51  53  54  55  55  56  56  56  
 LCS     168       E    15   20   23       C        1  10  20  21  23  27  32  37  41  42  46  47  51  53  54  55  55  56  56  56  
 LCS     169       Q    10   20   23       C        3  13  20  21  23  27  32  37  41  42  46  47  51  53  54  55  55  56  56  56  
 LCS     170       P     3   20   23       C        1   1   1   7  16  23  30  37  41  42  46  47  51  53  54  55  55  56  56  56  
 LCS     171       E     3   20   23       C        1   1   8  11  18  23  28  37  41  42  46  47  51  53  54  55  55  56  56  56  
 LCS     172       A     3   20   23       C        1   1   3   4  18  23  28  33  40  42  46  47  51  53  54  55  55  56  56  56  
 LCS     173       G     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     174       W     0    0    0       C        3  15  20  21  23  27  32  37  41  42  46  47  51  53  54  55  55  56  56  56  
 LCS     175       R     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     176       G     3    4   30       C        1   1   1   1  16  22  30  37  41  42  46  47  51  53  54  55  55  56  56  56  
 LCS     177       R     3    6   30       E        1   1   7  10  23  27  32  37  41  42  46  47  51  53  54  55  55  56  56  56  
 LCS     178       T     3    6   30       E        1   1   6  11  23  27  32  37  41  42  46  47  51  53  54  55  55  56  56  56  
 LCS     179       G     4    6   30       C        1  13  20  21  23  27  32  37  41  42  46  47  51  53  54  55  55  56  56  56  
 LCS     180       T     4    6   30       C        1   2  15  21  23  27  32  37  41  42  46  47  51  53  54  55  55  56  56  56  
 LCS     181       V     4   10   30       H        1   1   1   3   5  15  25  33  41  42  46  47  51  53  54  55  55  56  56  56  
 LCS     182       L     9   10   30       H        1   1   3   5   7  12  18  31  34  39  43  46  51  53  54  55  55  56  56  56  
 LCS     183       T     9   10   30       H        3   3   9  11  23  26  32  37  41  42  46  47  51  53  54  55  55  56  56  56  
 LCS     184       A     9   10   30       H        3   3   3   3   3   4  21  26  36  40  45  47  51  53  54  55  55  56  56  56  
 LCS     185       V     9   10   30       H        3   3   8  11  18  23  30  37  41  42  46  47  51  53  54  55  55  56  56  56  
 LCS     186       L     9   10   30       H        3   3   3   7  23  27  32  37  41  42  46  47  51  53  54  55  55  56  56  56  
 LCS     187       Q     9   10   30       H        3   3   8  16  23  27  32  37  41  42  46  47  51  53  54  55  55  56  56  56  
 LCS     188       D     9   10   30       H        5  15  20  21  23  27  32  37  41  42  46  47  51  53  54  55  55  56  56  56  
 LCS     189       H     9   10   30       C        3   3   3   3   3   9  11  15  20  37  46  47  51  53  54  55  55  56  56  56  
 LCS     190       G     9   10   30       C        1   1   3   3   3   4   5   5   5  12  18  20  27  40  46  53  55  56  56  56  
 LCS     191       T     4   10   30       C        1   1   1   2   3   3   6   8  12  17  42  45  50  53  54  55  55  56  56  56  
 LCS     192       L     4    8   30       C        1   1   1   2  23  27  32  37  41  42  46  47  51  53  54  55  55  56  56  56  
 LCS     193       A     4    8   30       C        1   1  19  21  23  27  32  37  41  42  46  47  51  53  54  55  55  56  56  56  
 LCS     194       E     4    8   30       C        1   1   1  11  17  22  26  35  41  42  46  47  51  53  54  55  55  56  56  56  
 LCS     195       H     4    8   30       C        1   1   1   2  11  13  25  31  36  42  46  47  51  53  54  55  55  56  56  56  
 LCS     196       D     3    8   30       E        0   1   1   2   3   5   6  24  34  39  41  45  51  53  54  55  55  56  56  56  
 LCS     197       I     4    8   30       E        1   1   4  14  23  27  32  37  41  42  46  47  51  53  54  55  55  56  56  56  
 LCS     198       Y     4    8   30       E        1   1   9  13  17  23  28  35  41  42  46  47  51  53  54  55  55  56  56  56  
 LCS     199       I     4    8   30       E        1   6  10  14  23  27  32  37  41  42  46  47  51  53  54  55  55  56  56  56  
 LCS     200       A     4    7   30       E        1   1   8  13  18  25  32  37  41  42  46  47  51  53  54  55  55  56  56  56  
 LCS     201       G     4    6   30       C        1   1   1   2  11  17  20  29  34  39  42  46  50  53  54  55  55  56  56  56  
 LCS     202       R     4    6   30       C        1   1   1   2   3   5  13  19  22  27  46  47  51  53  54  55  55  56  56  56  
 LCS     203       F     4    6   30       H        1   1   1   2   3   5   8  10  36  37  46  47  51  53  54  55  55  56  56  56  
 LCS     204       E     4    6   30       H        1   1   1   2   2   5  14  18  36  37  42  47  51  53  54  55  55  56  56  56  
 LCS     205       M     3    6   30       H        1   1   1   2   2   2   3  17  20  34  41  46  51  53  54  55  55  56  56  56  
 LCS     206       A     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     207       K     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     208       I     0    0    0       H        0   1   1   1   1   2   2  18  22  34  37  37  46  49  53  55  55  56  56  56  
 LCS     209       A     0    0    0       H        0   0   1   2   2   3   3   3   3   4  37  46  49  52  54  55  55  56  56  56  
 LCS     210       R     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     211       D     3    7    7       H        1   1   1   1  15  21  26  33  41  42  46  47  51  53  54  55  55  56  56  56  
 LCS     212       L     6    7    7       H        1   2   2   3   6  21  26  36  41  42  46  47  51  53  54  55  55  56  56  56  
 LCS     213       F     6    7    7       H        1   2   2   9  17  19  25  30  36  40  44  47  51  53  54  55  55  56  56  56  
 LCS     214       C     6    7    7       H        1   2   2   2   2   3   3   4  24  27  41  45  48  53  54  55  55  56  56  56  
 LCS     215       S     6    7    7       H        1   2   2   3   3   3   5   7  36  37  42  47  51  53  54  55  55  56  56  56  
 LCS     216       E     6    7    7       H        1   2   8  12  17  21  29  36  41  42  46  47  51  53  54  55  55  56  56  56  
 LCS     217       R     6    7    7       C        3   7  11  17  19  22  27  35  41  42  46  47  51  53  54  55  55  56  56  56  
 LCS     218       N     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     219       A     4    4    4       C        1   1   1   1   1  12  24  31  35  39  42  46  51  53  54  55  55  56  56  56  
 LCS     220       R     4    4    4       C        1   1   1   1   3  12  24  31  34  39  41  46  48  53  54  55  55  56  56  56  
 LCS     221       E     4    4    4       H        1   1   1   1   1   5   6  29  34  39  41  47  51  53  54  55  55  56  56  56  
 LCS     222       D     4    4    4       H        1   1   1   2   3  20  26  31  35  39  42  46  51  53  54  55  55  56  56  56  
 LCS     223       R     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     224       L     0    0    0       E        0   0   1   1   1   2   2  31  35  40  43  46  51  53  54  55  55  56  56  56  
 LCS     225       F     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     226       G     4    4    6       C        1   1   1   1   1   2   5   6   7   8  10  12  42  45  47  49  52  53  55  56  
 LCS     227       D     4    4    6       C        1   1   1   1   1   1   2   3   3   3   4   4  31  34  47  49  50  50  52  55  
 LCS     228       A     4    4    6       H        1   1   1   1   1   2   2  19  22  24  37  38  42  45  49  51  52  53  56  56  
 LCS     229       F     4    4    6       H        0   1   1   1   2   3   3   4  12  38  45  47  51  53  54  55  55  56  56  56  
 LCS     230       A     3    3    6       H        0   1   1   1   1   2   3   4   5   5   8   9  10  49  54  55  55  56  56  56  
 LCS     231       F     3    3    6       H        0   1   1   1   2   3   3   4   5   5   5   5   8  11  13  40  45  56  56  56  
 LCS TOTAL_SCORE (RMS CUTOFF   1.00):   1.97 
 
 NUMBER_OF_CA_Tg:  226      NUMBER_OF_CA_Pr:  130      PERCENT_OF_CA:  57.52  
 
GLOBAL_DISTANCE_TEST (the largest set of residues under DISTANCE_CUTOFF (using LCS results)): 
 GDT DISTANCE_CUTOFF     0.50    1.00    1.50    2.00    2.50    3.00    3.50    4.00    4.50    5.00    5.50    6.00    6.50    7.00    7.50    8.00    8.50    9.00    9.50   10.00  
 GDT NUMBER_OF_CA_max      15      34      47      49      54      63      74      84      93      97     104     107     116     120     123     125     126     127     128     128  
 GDT PERCENT_OF_CA_Pr   11.54   26.15   36.15   37.69   41.54   48.46   56.92   64.62   71.54   74.62   80.00   82.31   89.23   92.31   94.62   96.15   96.92   97.69   98.46   98.46 
 GDT PERCENT_OF_CA_Tg    6.64   15.04   20.80   21.68   23.89   27.88   32.74   37.17   41.15   42.92   46.02   47.35   51.33   53.10   54.42   55.31   55.75   56.19   56.64   56.64 
 GDT FRAGMENT: Beg-End  91-167  91-188  91-188  91-188  91-193  91-199  91-200  91-200  91-217  91-217  91-217  91-229  91-229  91-229  91-230  91-230  91-230  91-231  91-231  91-231 
 GDT RMS_LOCAL           0.36    0.72    0.94    1.00    1.24    1.62    1.99    2.32    2.61    2.74    3.00    3.12    3.51    3.67    3.81    3.92    3.98    4.06    4.14    4.14 
 GDT RMS_ALL_CA          4.60    4.47    4.46    4.47    4.44    4.42    4.46    4.40    4.40    4.40    4.40    4.40    4.37    4.37    4.37    4.37    4.38    4.38    4.37    4.37 
 
 
 TEST (CA)  RMS =   4.36               (Number of atoms:  130) 
 
 (CA)  RMS:                   CRMSCA         NP     PP     TN 
     ALL . . . . . . . . . .    4.36        130    57.5   226     CRMSCA  
     CRN = ALL/NP  . . . . .    0.0335                            CRMSCA  
     SECONDARY STRUCTURE . .    3.72         67    54.9   122     CRMSCA  
     SURFACE . . . . . . . .    4.62         63    54.8   115     CRMSCA  
     BURIED  . . . . . . . .    4.11         67    60.4   111     CRMSCA  
 (MC)  RMS:                   CRMSMC         NP     PP     TN 
     ALL . . . . . . . . . .    4.25        520    46.7  1114     CRMSMC  
     SECONDARY STRUCTURE . .    3.54        268    44.2   607     CRMSMC  
     SURFACE . . . . . . . .    4.51        252    44.4   567     CRMSMC  
     BURIED  . . . . . . . .    3.98        268    49.0   547     CRMSMC  
 (SC)  RMS:                   CRMSSC         NP     PP     TN 
     ALL . . . . . . . . . .    0.00          0     0.0   889     CRMSSC  
     RELIABLE SIDE CHAINS  .    0.00          0     0.0   771     CRMSSC  
     SECONDARY STRUCTURE . .    0.00          0     0.0   477     CRMSSC  
     SURFACE . . . . . . . .    0.00          0     0.0   465     CRMSSC  
     BURIED  . . . . . . . .    0.00          0     0.0   424     CRMSSC  
 (ALL) RMS:                   CRMSALL        NP     PP     TN 
     ALL . . . . . . . . . .    4.25        520    29.0  1793     CRMSALL 
     SECONDARY STRUCTURE . .    3.54        268    27.8   965     CRMSALL 
     SURFACE . . . . . . . .    4.51        252    27.2   925     CRMSALL 
     BURIED  . . . . . . . .    3.98        268    30.9   868     CRMSALL 
 
Accuracy of estimates of atomic coordinate errors: model <-> target 
 
 (CA)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    3.582      1.000       0.500    130    57.5   226     ERRCA  
     SECONDARY STRUCTURE . .    3.006      1.000       0.500     67    54.9   122     ERRCA  
     SURFACE . . . . . . . .    4.024      1.000       0.500     63    54.8   115     ERRCA  
     BURIED  . . . . . . . .    3.165      1.000       0.500     67    60.4   111     ERRCA  
 (MC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    3.474      1.000       0.500    520    46.7  1114     ERRMC  
     SECONDARY STRUCTURE . .    2.868      1.000       0.500    268    44.2   607     ERRMC  
     SURFACE . . . . . . . .    3.916      1.000       0.500    252    44.4   567     ERRMC  
     BURIED  . . . . . . . .    3.058      1.000       0.500    268    49.0   547     ERRMC  
 (SC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    0.000      0.000       0.000      0     0.0   889     ERRSC  
     RELIABLE SIDE CHAINS  .    0.000      0.000       0.000      0     0.0   771     ERRSC  
     SECONDARY STRUCTURE . .    0.000      0.000       0.000      0     0.0   477     ERRSC  
     SURFACE . . . . . . . .    0.000      0.000       0.000      0     0.0   465     ERRSC  
     BURIED  . . . . . . . .    0.000      0.000       0.000      0     0.0   424     ERRSC  
 (ALL) ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    3.474      1.000       0.500    520    29.0  1793     ERRALL 
     SECONDARY STRUCTURE . .    2.868      1.000       0.500    268    27.8   965     ERRALL 
     SURFACE . . . . . . . .    3.916      1.000       0.500    252    27.2   925     ERRALL 
     BURIED  . . . . . . . .    3.058      1.000       0.500    268    30.9   868     ERRALL 
 
 
 
DISTANCES: Percent of total atoms where distance (target <-> model) in global 
           superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms 
            D < 1     D < 2     D < 3     D < 5    D < 10      NP      TN 
CA  (N)        17        48        60        92       128     130     226   DISTCA 
CA  (P)      7.52     21.24     26.55     40.71     56.64             226   DISTCA 
CA  (RMS)    0.68      1.24      1.61      2.60      4.14                   DISTCA 
 
ALL (N)        66       200       254       385       509     520    1793   DISTALL 
ALL (P)      3.68     11.15     14.17     21.47     28.39            1793   DISTALL 
ALL (RMS)    0.68      1.28      1.64      2.64      3.96                   DISTALL 
 
 
 
 
END of the results output 
