 
####################################################### 
#                                                     # 
#                        ACE                          # 
#                                                     # 
#        Ab-initio protein structure prediction       # 
#                         &                           # 
#               Comparative modeling                  # 
#                                                     # 
#                     Evaluator                       # 
#                                                     # 
#                ----------------- 11/1998            # 
#                                                     # 
#                         by                          # 
#           Adam Zemla & Ceslovas Venclovas           # 
#                                                     # 
#         Protein Structure Prediction Center         # 
#      Lawrence Livermore National Laboratory, CA     # 
#                                                     # 
####################################################### 
########################## 
#                        # 
#    ACE parameters:     # 
#                        # 
########################## 
# 
# MEASURES: 
# 
# For AB: 0 3 9 13 14 
# For CM: 0 1 2 3 6 7 8 9 10 11 12 13 14 18 
# 
ARMSMC  0 1 2     7 8 9    11 12 13 14 18 
ARMSSC  0 1 2 3 6 7 8 9    11 12 13 14 18 
# 
CRMSCA  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSMC  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSSC  0 1 2 3 6     9    11 12 13 14 18 
CRMSALL 0 1 2     7 8 9    11 12 13 14 18 
# 
D-E_CA  0 1 2     7 8 9    11 12 13 14 18 
D-E_MC  0 1 2     7 8 9    11 12 13 14 18 
D-E_SC  0 1 2 3 6 7 8 9    11 12 13 14 18 
D-E_ALL 0 1 2     7 8 9    11 12 13 14 18 
# 
# Output parameters 
# 
DIHED-OUTPUT        0         #    1 - ON, 0 - OFF 
RES-CONTACTS        0         #    1 - ON, 0 - OFF 
SS-OUTPUT           1         #    1 - ON, 0 - OFF 
PHI-PSI             0         #    1 - SEPARATELY, 0 - NO  
# 
# Calculation parameters 
# 
SOV-METHOD          1         #    0 - SOV 94,  1 - SOV 
# 
TEMP-FACTOR         30.0      #    Target structure temperature factor cutoff 
ACCESS-CUTOFF       0.20      #    Solvent accessibility cutoff   
ANGLES-CORRECT      30.0      #    target-model  (diff < 30.0)    
DSSP-HELIX          6         #    Secondary Structure subset: helix cutoff  
DSSP-STRAND         3         #    Secondary Structure subset: strand cutoff 
ROTAMERS-LIMIT      30.0      #    target-parent (diff > 30.0) 
ROTATION-MATRIX     0         #    1 - ON, 0 - OFF   
SC-SWAPPING         1         #    1 - ON, 0 - OFF    
SEP-CONTACTS        1         #    Separation interval along the chain 
RESIDUE-CONTACTS    8.0       #    Contact definition between two C-beta atoms 
# 
CRMS-METHOD         1         #    0 - ALL, 1 - CA, 2 - MC+CB, 3 - CA (iter)  
ITER-CUTOFF         2.5       #    DISTANCE cutoff (for CA (iter))  
LCS_GDT             1         #    LCS and GDT calculations (1 - ON, 0 - OFF) 
########################## 
#                        # 
#      ACE results:      # 
#                        # 
########################## 
 
 
 
# WARNING! The number of residues in SS section: 104 , MODEL 104 , TARGET 117 
#          The number of residues possible to evaluate: 104 
 
 
 SECONDARY STRUCTURE PREDICTION: 
       NUM    RES   SS   Prediction   Probability 
 SSP     1     P     C     C             1.00 
 SSP     2     F     E     E             1.00 
 SSP     3     L     E     E             1.00 
 SSP     4     E     E     E             1.00 
 SSP     5     L     E     E             1.00 
 SSP     6     D     E     E             1.00 
 SSP     7     T     E     E             1.00 
 SSP     8     N     C     C             1.00 
 SSP     9     L     C     C             1.00 
 SSP    10     P     C     C             1.00 
 SSP    11     A     H     C             1.00 
 SSP    12     N     H     C             1.00 
 SSP    13     R     H     C             1.00 
 SSP    14     V     C     C             1.00 
 SSP    15     P     C     C             1.00 
 SSP    16     A     C     C             1.00 
 SSP    17     G     C     C             1.00 
 SSP    18     L     H     H             1.00 
 SSP    19     E     H     H             1.00 
 SSP    20     K     H     H             1.00 
 SSP    21     R     H     H             1.00 
 SSP    22     L     H     H             1.00 
 SSP    23     C     H     H             1.00 
 SSP    24     A     H     H             1.00 
 SSP    25     A     H     H             1.00 
 SSP    26     A     H     H             1.00 
 SSP    27     A     H     H             1.00 
 SSP    28     S     H     H             1.00 
 SSP    29     I     H     H             1.00 
 SSP    30     L     H     H             1.00 
 SSP    31     G     C     C             1.00 
 SSP    32     K     C     C             1.00 
 SSP    33     P     C     C             1.00 
 SSP    34     A     H     H             1.00 
 SSP    35     D     H     H             1.00 
 SSP    36     R     H     H             1.00 
 SSP    37     V     C     C             1.00 
 SSP    38     N     E     E             1.00 
 SSP    39     V     E     E             1.00 
 SSP    40     T     E     E             1.00 
 SSP    41     V     E     E             1.00 
 SSP    42     R     E     E             1.00 
 SSP    43     P     C     C             1.00 
 SSP    44     G     C     C             1.00 
 SSP    45     L     C     C             1.00 
 SSP    46     A     C     C             1.00 
 SSP    47     M     C     C             1.00 
 SSP    48     A     C     C             1.00 
 SSP    49     L     E     E             1.00 
 SSP    50     S     C     C             1.00 
 SSP    51     G     C     C             1.00 
 SSP    52     S     E     E             1.00 
 SSP    53     T     C     C             1.00 
 SSP    54     E     C     C             1.00 
 SSP    55     P     C     C             1.00 
 SSP    56     C     C     C             1.00 
 SSP    57     A     E     E             1.00 
 SSP    58     Q     E     E             1.00 
 SSP    59     L     E     E             1.00 
 SSP    60     S     E     E             1.00 
 SSP    61     I     E     E             1.00 
 SSP    62     S     E     E             1.00 
 SSP    63     S     E     E             1.00 
 SSP    64     I     E     C             1.00 
 SSP    65     G     C     C             1.00 
 SSP    66     V     C     C             1.00 
 SSP    67     V     C     C             1.00 
 SSP    68     G     C     C             1.00 
 SSP    69     T     C     C             1.00 
 SSP    70     A     H     C             1.00 
 SSP    71     E     H     C             1.00 
 SSP    72     D     H     C             1.00 
 SSP    73     N     H     H             1.00 
 SSP    74     R     H     H             1.00 
 SSP    75     S     H     H             1.00 
 SSP    76     H     H     H             1.00 
 SSP    77     S     H     H             1.00 
 SSP    78     A     H     H             1.00 
 SSP    79     H     H     H             1.00 
 SSP    80     F     H     H             1.00 
 SSP    81     F     H     H             1.00 
 SSP    82     E     H     H             1.00 
 SSP    83     F     H     H             1.00 
 SSP    84     L     H     H             1.00 
 SSP    85     T     H     H             1.00 
 SSP    86     K     H     H             1.00 
 SSP    87     E     H     H             1.00 
 SSP    88     L     H     C             1.00 
 SSP    89     A     C     C             1.00 
 SSP    90     L     C     C             1.00 
 SSP    91     G     C     C             1.00 
 SSP    92     Q     H     H             1.00 
 SSP    93     D     H     H             1.00 
 SSP    94     R     H     H             1.00 
 SSP    95     I     E     E             1.00 
 SSP    96     L     E     E             1.00 
 SSP    97     I     E     E             1.00 
 SSP    98     R     E     E             1.00 
 SSP    99     F     E     E             1.00 
 SSP   100     F     E     E             1.00 
 SSP   101     P     E     E             1.00 
 SSP   102     L     E     C             1.00 
 SSP   103     E     C     C             1.00 
 SSP   104     S     H     C             1.00 
 
 NP      - Number of predicted residues 
 PP      - Percent of predicted residues 
 Q3      - Residues predicted correctly (H, E, C) 
 Qhelix  - Residues predicted correctly (HELIX) 
 Qstrand - Residues predicted correctly (STRAND) 
 Qcoil   - Residues predicted correctly (COIL) 
 SOV     - Segment overlap quantity 
 
                     Q3      Qhelix   Qstrand   Qcoil      PP 
 Qindex              90.4      81.0     93.1    100.0     88.9 
 
                     ALL      HELIX    STRAND    COIL      PP 
 SOV observed        91.2      90.5    100.0     84.3     88.9 
 
           Considered    Percent predicted   Percent predicted 
            segments        correctly         as wrong type 
 SEG           10              80.0               0.0 
 
         Number of wrong    Number of wrong 
             breaks             joins 
 B/J            0                 0 
 
  CONFIDENCE (P)     Average     NP    PP/BIN     Q3 
 BIN  0.90 - 1.00      1.00     104    100.0     90.4 
 
 BIN  0.00 - 1.00      1.00     104    100.0     90.4 
 
 
 
 
              predicted        number of target      total number   total number 
                as a         contacts possible in         of             of 
               contact         predicted subset:       contacts       contacts 
            percent  number    percent    number       in target    in prediction 
 CONTACTS:     0.0      0         0.0        0             0              0 
 
 
 
 CONSIDERED - explicitly provided contacts (with positive confidence) or 
              non contacts (with negative confidence) possible to evaluate 
 SEP      - Minimum separation between residues considered 
 NPC      - Number of contacts predicted correctly 
 PC(P)    - Percent of contacts predicted correctly from CONSIDERED in PREDICTION 
 PC(T)    - Percent of contacts predicted correctly from CONSIDERED in TARGET with SEP limit 
 PC(TT)   - Percent of contacts predicted correctly from TOTAL in TARGET with SEP limit 
 
                        CONSIDERED     CONSIDERED       TOTAL          TOTAL 
                      in PREDICTION    in TARGET    in PREDICTION    in TARGET 
 ALL RESIDUES USED         104             104           104            117 
 ALL CONTACTS (< 8.0A)     478             489           478            542 
 
               in PREDICTION      Predicted correctly          Submitted as        in TARGET 
                CONSIDERED     NPC   PC(P)   PC(T)   PC(TT)    NOT  predicted   CONSIDERED  TOTAL  |   SEP 
 RES CONTACTS       478        443   92.68   90.59   81.73       0     0.00         489       542  |   1-9999 
 RES CONTACTS       273        265   97.07   96.36   85.48       0     0.00         275       310  |   1-4    
 RES CONTACTS        28         22   78.57   84.62   59.46       0     0.00          26        37  |   5-8    
 RES CONTACTS       177        156   88.14   82.98   80.00       0     0.00         188       195  |   9-9999 
 
 
 
           TARGET 884 atoms, MODEL 884 atoms, 884 common with TARGET 
           Number of atoms possible to evaluate: 780 
 
MEASURES: 
 
 
ANGLES RMS : model <-> target 
 
 (MC: PHI+PSI) DIHED RMS:      ARMSMC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    31.99           89.3   206    88.8   232     ARMSMC  
     SECONDARY STRUCTURE . .    14.15           93.2   118   100.0   118     ARMSMC  
     SURFACE . . . . . . . .    39.80           86.0   121    83.4   145     ARMSMC  
     BURIED  . . . . . . . .    15.01           94.1    85    97.7    87     ARMSMC  
 (SC: CHI1) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    63.22           71.4    84    88.4    95     ARMSSC1 
     RELIABLE SIDE CHAINS  .    64.06           70.5    78    88.6    88     ARMSSC1 
     SECONDARY STRUCTURE . .    63.90           71.2    52   100.0    52     ARMSSC1 
     SURFACE . . . . . . . .    69.45           64.4    45    81.8    55     ARMSSC1 
     BURIED  . . . . . . . .    55.17           79.5    39    97.5    40     ARMSSC1 
 (SC: CHI2) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    64.38           61.3    62    88.6    70     ARMSSC2 
     RELIABLE SIDE CHAINS  .    55.69           64.3    42    85.7    49     ARMSSC2 
     SECONDARY STRUCTURE . .    66.28           62.5    40   100.0    40     ARMSSC2 
     SURFACE . . . . . . . .    63.39           60.6    33    82.5    40     ARMSSC2 
     BURIED  . . . . . . . .    65.50           62.1    29    96.7    30     ARMSSC2 
 (SC: CHI3) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    93.94           30.0    20    87.0    23     ARMSSC3 
     RELIABLE SIDE CHAINS  .    83.13           33.3    18    90.0    20     ARMSSC3 
     SECONDARY STRUCTURE . .    92.22           25.0    12   100.0    12     ARMSSC3 
     SURFACE . . . . . . . .    84.66           33.3    15    83.3    18     ARMSSC3 
     BURIED  . . . . . . . .   117.45           20.0     5   100.0     5     ARMSSC3 
 (SC: CHI4) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    77.41           30.0    10    90.9    11     ARMSSC4 
     RELIABLE SIDE CHAINS  .    77.41           30.0    10    90.9    11     ARMSSC4 
     SECONDARY STRUCTURE . .    74.57           33.3     6   100.0     6     ARMSSC4 
     SURFACE . . . . . . . .    66.37           37.5     8    88.9     9     ARMSSC4 
     BURIED  . . . . . . . .   111.09            0.0     2   100.0     2     ARMSSC4 
 
COORDINATES RMS : model <-> target 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   5.00): 
 FRAGMENT  1    1 - 104  104  Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT   104      1 - 104      1.24     1.24 
  LCS LOCAL_SCORE:            100.00 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   2.00): 
 FRAGMENT  1    1 - 104  104  Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT   104      1 - 104      1.24     1.24 
  LCS LOCAL_SCORE:            100.00 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   1.00): 
 FRAGMENT  1    1 - 104  104  Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    67      1 - 67       0.89     1.35 
  LCS LOCAL_SCORE:             52.57 
 
 
 LCS                   LENGTH_OF_THE 
 LCS  RESIDUE  RESIDUE    CONTINUOUS  SECONDARY 
 LCS   NUMBER     NAME       SEGMENT  STRUCTURE   GDT_DATA_COLUMNS (PERCENT OF THE TARGET) 
 LCS       1       P    67  104  104       C       26  52  76  85  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  
 LCS       2       F    67  104  104       E       23  52  76  85  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  
 LCS       3       L    67  104  104       E       25  52  76  85  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  
 LCS       4       E    67  104  104       E       25  52  76  85  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  
 LCS       5       L    67  104  104       E       26  52  76  85  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  
 LCS       6       D    67  104  104       E       26  52  76  85  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  
 LCS       7       T    67  104  104       E       26  52  76  85  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  
 LCS       8       N    67  104  104       C       26  52  76  85  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  
 LCS       9       L    67  104  104       C       26  52  76  85  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  
 LCS      10       P    67  104  104       C       26  52  76  85  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  
 LCS      11       A    67  104  104       H       26  52  76  85  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  
 LCS      12       N    67  104  104       H       25  52  76  85  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  
 LCS      13       R    67  104  104       H       23  52  76  85  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  
 LCS      14       V    67  104  104       C        8  52  76  85  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  
 LCS      15       P    67  104  104       C       17  52  76  85  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  
 LCS      16       A    67  104  104       C       18  52  76  85  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  
 LCS      17       G    67  104  104       C        5  37  65  85  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  
 LCS      18       L    67  104  104       H       23  52  76  85  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  
 LCS      19       E    67  104  104       H       23  52  76  85  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  
 LCS      20       K    67  104  104       H       18  49  76  85  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  
 LCS      21       R    67  104  104       H       24  52  76  85  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  
 LCS      22       L    67  104  104       H       26  52  76  85  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  
 LCS      23       C    67  104  104       H       26  52  76  85  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  
 LCS      24       A    67  104  104       H       26  52  76  85  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  
 LCS      25       A    67  104  104       H       23  52  76  85  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  
 LCS      26       A    67  104  104       H       26  52  76  85  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  
 LCS      27       A    67  104  104       H       26  52  76  85  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  
 LCS      28       S    67  104  104       H       23  52  76  85  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  
 LCS      29       I    67  104  104       H       23  52  76  85  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  
 LCS      30       L    67  104  104       H       23  52  76  85  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  
 LCS      31       G    67  104  104       C       23  52  76  85  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  
 LCS      32       K    67  104  104       C       26  52  76  85  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  
 LCS      33       P    67  104  104       C       23  52  76  85  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  
 LCS      34       A    67  104  104       H       23  52  76  85  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  
 LCS      35       D    67  104  104       H       20  52  76  85  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  
 LCS      36       R    67  104  104       H       23  52  76  85  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  
 LCS      37       V    67  104  104       C       26  52  76  85  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  
 LCS      38       N    67  104  104       E       26  52  76  85  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  
 LCS      39       V    67  104  104       E       26  52  76  85  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  
 LCS      40       T    67  104  104       E       26  52  76  85  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  
 LCS      41       V    67  104  104       E       26  52  76  85  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  
 LCS      42       R    67  104  104       E       25  52  76  85  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  
 LCS      43       P    67  104  104       C       26  52  76  85  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  
 LCS      44       G    67  104  104       C       26  52  76  85  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  
 LCS      45       L    67  104  104       C       26  52  76  85  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  
 LCS      46       A    67  104  104       C       23  52  76  85  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  
 LCS      47       M    67  104  104       C       23  52  76  85  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  
 LCS      48       A    67  104  104       C       20  52  76  85  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  
 LCS      49       L    67  104  104       E       10  43  76  85  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  
 LCS      50       S    67  104  104       C       10  22  59  85  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  
 LCS      51       G    67  104  104       C       10  22  58  85  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  
 LCS      52       S    67  104  104       E       10  45  76  85  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  
 LCS      53       T    67  104  104       C       10  52  76  85  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  
 LCS      54       E    67  104  104       C       26  52  76  85  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  
 LCS      55       P    67  104  104       C       26  52  76  85  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  
 LCS      56       C    67  104  104       C       23  47  76  85  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  
 LCS      57       A    67  104  104       E       23  46  76  85  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  
 LCS      58       Q    67  104  104       E       12  34  76  85  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  
 LCS      59       L    67  104  104       E       11  40  76  85  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  
 LCS      60       S    67  104  104       E       26  52  76  85  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  
 LCS      61       I    67  104  104       E       26  52  76  85  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  
 LCS      62       S    67  104  104       E       26  52  76  85  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  
 LCS      63       S    67  104  104       E       26  52  76  85  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  
 LCS      64       I    67  104  104       E       26  52  76  85  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  
 LCS      65       G    67  104  104       C       11  52  76  85  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  
 LCS      66       V    67  104  104       C       20  52  76  85  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  
 LCS      67       V    67  104  104       C        4  41  76  85  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  
 LCS      68       G     3  104  104       C        2   2  17  56  79  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  
 LCS      69       T    18  104  104       C        2   3  57  82  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  
 LCS      70       A    20  104  104       H        2  31  55  81  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  
 LCS      71       E    34  104  104       H        2  25  55  81  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  
 LCS      72       D    34  104  104       H        9  31  76  85  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  
 LCS      73       N    34  104  104       H       11  52  76  85  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  
 LCS      74       R    34  104  104       H       11  52  76  85  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  
 LCS      75       S    34  104  104       H       11  41  76  85  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  
 LCS      76       H    34  104  104       H       11  40  76  85  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  
 LCS      77       S    34  104  104       H       11  41  76  85  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  
 LCS      78       A    34  104  104       H       11  29  74  85  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  
 LCS      79       H    34  104  104       H       11  41  76  85  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  
 LCS      80       F    34  104  104       H       11  41  76  85  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  
 LCS      81       F    34  104  104       H       11  41  76  85  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  
 LCS      82       E    34  104  104       H       11  40  76  85  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  
 LCS      83       F    34  104  104       H       11  31  65  85  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  
 LCS      84       L    34  104  104       H        9  28  65  85  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  
 LCS      85       T    34  104  104       H        9  41  76  85  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  
 LCS      86       K    34  104  104       H        9  42  76  85  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  
 LCS      87       E    34  104  104       H        7  41  76  85  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  
 LCS      88       L    34  104  104       H        9  49  76  85  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  
 LCS      89       A    34  104  104       C       11  41  76  85  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  
 LCS      90       L    34  104  104       C        5  30  76  85  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  
 LCS      91       G    34  104  104       C        6  30  60  85  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  
 LCS      92       Q    34  104  104       H        6  26  76  85  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  
 LCS      93       D    34  104  104       H       20  49  76  85  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  
 LCS      94       R    34  104  104       H       23  41  68  85  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  
 LCS      95       I    34  104  104       E       23  46  76  85  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  
 LCS      96       L    34  104  104       E       23  47  76  85  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  
 LCS      97       I    34  104  104       E       26  52  76  85  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  
 LCS      98       R    34  104  104       E       26  52  76  85  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  
 LCS      99       F    34  104  104       E       26  52  76  85  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  
 LCS     100       F    34  104  104       E       25  52  76  85  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  
 LCS     101       P    34  104  104       E       20  52  76  85  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  
 LCS     102       L    34  104  104       E       20  52  76  85  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  
 LCS     103       E    34  104  104       C       17  52  76  85  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  
 LCS     104       S    34  104  104       H       16  52  76  85  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  88  
 LCS TOTAL_SCORE (RMS CUTOFF   1.00):  41.54 
 
 NUMBER_OF_CA_Tg:  117      NUMBER_OF_CA_Pr:  104      PERCENT_OF_CA:  88.89  
 
GLOBAL_DISTANCE_TEST (the largest set of residues under DISTANCE_CUTOFF (using LCS results)): 
 GDT DISTANCE_CUTOFF     0.50    1.00    1.50    2.00    2.50    3.00    3.50    4.00    4.50    5.00    5.50    6.00    6.50    7.00    7.50    8.00    8.50    9.00    9.50   10.00  
 GDT NUMBER_OF_CA_max      31      62      89     100     103     104     104     104     104     104     104     104     104     104     104     104     104     104     104     104  
 GDT PERCENT_OF_CA_Pr   29.81   59.62   85.58   96.15   99.04  100.00  100.00  100.00  100.00  100.00  100.00  100.00  100.00  100.00  100.00  100.00  100.00  100.00  100.00  100.00 
 GDT PERCENT_OF_CA_Tg   26.50   52.99   76.07   85.47   88.03   88.89   88.89   88.89   88.89   88.89   88.89   88.89   88.89   88.89   88.89   88.89   88.89   88.89   88.89   88.89 
 GDT FRAGMENT: Beg-End   1-99    1-103   1-104   1-104   1-104   1-104   1-104   1-104   1-104   1-104   1-104   1-104   1-104   1-104   1-104   1-104   1-104   1-104   1-104   1-104 
 GDT RMS_LOCAL           0.36    0.64    0.96    1.10    1.18    1.24    1.24    1.24    1.24    1.24    1.24    1.24    1.24    1.24    1.24    1.24    1.24    1.24    1.24    1.24 
 GDT RMS_ALL_CA          1.45    1.40    1.26    1.25    1.24    1.24    1.24    1.24    1.24    1.24    1.24    1.24    1.24    1.24    1.24    1.24    1.24    1.24    1.24    1.24 
 
 
 TEST (CA)  RMS =   1.24               (Number of atoms:  104) 
 
 (CA)  RMS:                   CRMSCA         NP     PP     TN 
     ALL . . . . . . . . . .    1.24        104    88.9   117     CRMSCA  
     CRN = ALL/NP  . . . . .    0.0119                            CRMSCA  
     SECONDARY STRUCTURE . .    1.16         59   100.0    59     CRMSCA  
     SURFACE . . . . . . . .    1.34         61    83.6    73     CRMSCA  
     BURIED  . . . . . . . .    1.08         43    97.7    44     CRMSCA  
 (MC)  RMS:                   CRMSMC         NP     PP     TN 
     ALL . . . . . . . . . .    1.28        513    89.1   576     CRMSMC  
     SECONDARY STRUCTURE . .    1.17        295   100.0   295     CRMSMC  
     SURFACE . . . . . . . .    1.37        298    83.7   356     CRMSMC  
     BURIED  . . . . . . . .    1.13        215    97.7   220     CRMSMC  
 (SC)  RMS:                   CRMSSC         NP     PP     TN 
     ALL . . . . . . . . . .    1.99        364    87.5   416     CRMSSC  
     RELIABLE SIDE CHAINS  .    1.82        304    86.9   350     CRMSSC  
     SECONDARY STRUCTURE . .    2.06        237   100.0   237     CRMSSC  
     SURFACE . . . . . . . .    2.21        199    80.6   247     CRMSSC  
     BURIED  . . . . . . . .    1.68        165    97.6   169     CRMSSC  
 (ALL) RMS:                   CRMSALL        NP     PP     TN 
     ALL . . . . . . . . . .    1.64        780    88.2   884     CRMSALL 
     SECONDARY STRUCTURE . .    1.67        473   100.0   473     CRMSALL 
     SURFACE . . . . . . . .    1.79        443    82.2   539     CRMSALL 
     BURIED  . . . . . . . .    1.43        337    97.7   345     CRMSALL 
 
Accuracy of estimates of atomic coordinate errors: model <-> target 
 
 (CA)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    0.872      0.604       0.302    104    88.9   117     ERRCA  
     SECONDARY STRUCTURE . .    0.807      0.581       0.291     59   100.0    59     ERRCA  
     SURFACE . . . . . . . .    0.954      0.626       0.313     61    83.6    73     ERRCA  
     BURIED  . . . . . . . .    0.755      0.573       0.287     43    97.7    44     ERRCA  
 (MC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    0.777      0.499       0.259    513    89.1   576     ERRMC  
     SECONDARY STRUCTURE . .    0.707      0.479       0.248    295   100.0   295     ERRMC  
     SURFACE . . . . . . . .    0.849      0.512       0.263    298    83.7   356     ERRMC  
     BURIED  . . . . . . . .    0.677      0.480       0.253    215    97.7   220     ERRMC  
 (SC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    1.420      0.795       0.403    364    87.5   416     ERRSC  
     RELIABLE SIDE CHAINS  .    1.301      0.784       0.397    304    86.9   350     ERRSC  
     SECONDARY STRUCTURE . .    1.479      0.821       0.415    237   100.0   237     ERRSC  
     SURFACE . . . . . . . .    1.545      0.756       0.383    199    80.6   247     ERRSC  
     BURIED  . . . . . . . .    1.270      0.842       0.428    165    97.6   169     ERRSC  
 (ALL) ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    1.038      0.589       0.304    780    88.2   884     ERRALL 
     SECONDARY STRUCTURE . .    1.052      0.602       0.309    473   100.0   473     ERRALL 
     SURFACE . . . . . . . .    1.119      0.577       0.295    443    82.2   539     ERRALL 
     BURIED  . . . . . . . .    0.932      0.605       0.315    337    97.7   345     ERRALL 
 
 
 
DISTANCES: Percent of total atoms where distance (target <-> model) in global 
           superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms 
            D < 1     D < 2     D < 3     D < 5    D < 10      NP      TN 
CA  (N)        47        98       103       104       104     104     117   DISTCA 
CA  (P)     40.17     83.76     88.03     88.89     88.89             117   DISTCA 
CA  (RMS)    0.64      1.09      1.19      1.24      1.24                   DISTCA 
 
ALL (N)       323       665       731       773       780     780     884   DISTALL 
ALL (P)     36.54     75.23     82.69     87.44     88.24             884   DISTALL 
ALL (RMS)    0.68      1.13      1.30      1.54      1.64                   DISTALL 
 
 
 
 
END of the results output 
