 
####################################################### 
#                                                     # 
#                        ACE                          # 
#                                                     # 
#        Ab-initio protein structure prediction       # 
#                         &                           # 
#               Comparative modeling                  # 
#                                                     # 
#                     Evaluator                       # 
#                                                     # 
#                ----------------- 11/1998            # 
#                                                     # 
#                         by                          # 
#           Adam Zemla & Ceslovas Venclovas           # 
#                                                     # 
#         Protein Structure Prediction Center         # 
#      Lawrence Livermore National Laboratory, CA     # 
#                                                     # 
####################################################### 
########################## 
#                        # 
#    ACE parameters:     # 
#                        # 
########################## 
# 
# MEASURES: 
# 
# For AB: 0 3 9 13 14 
# For CM: 0 1 2 3 6 7 8 9 10 11 12 13 14 18 
# 
ARMSMC  0 1 2     7 8 9    11 12 13 14 18 
ARMSSC  0 1 2 3 6 7 8 9    11 12 13 14 18 
# 
CRMSCA  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSMC  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSSC  0 1 2 3 6     9    11 12 13 14 18 
CRMSALL 0 1 2     7 8 9    11 12 13 14 18 
# 
D-E_CA  0 1 2     7 8 9    11 12 13 14 18 
D-E_MC  0 1 2     7 8 9    11 12 13 14 18 
D-E_SC  0 1 2 3 6 7 8 9    11 12 13 14 18 
D-E_ALL 0 1 2     7 8 9    11 12 13 14 18 
# 
# Output parameters 
# 
DIHED-OUTPUT        0         #    1 - ON, 0 - OFF 
RES-CONTACTS        0         #    1 - ON, 0 - OFF 
SS-OUTPUT           1         #    1 - ON, 0 - OFF 
PHI-PSI             0         #    1 - SEPARATELY, 0 - NO  
# 
# Calculation parameters 
# 
SOV-METHOD          1         #    0 - SOV 94,  1 - SOV 
# 
TEMP-FACTOR         30.0      #    Target structure temperature factor cutoff 
ACCESS-CUTOFF       0.20      #    Solvent accessibility cutoff   
ANGLES-CORRECT      30.0      #    target-model  (diff < 30.0)    
DSSP-HELIX          6         #    Secondary Structure subset: helix cutoff  
DSSP-STRAND         3         #    Secondary Structure subset: strand cutoff 
ROTAMERS-LIMIT      30.0      #    target-parent (diff > 30.0) 
ROTATION-MATRIX     0         #    1 - ON, 0 - OFF   
SC-SWAPPING         1         #    1 - ON, 0 - OFF    
SEP-CONTACTS        1         #    Separation interval along the chain 
RESIDUE-CONTACTS    8.0       #    Contact definition between two C-beta atoms 
# 
CRMS-METHOD         1         #    0 - ALL, 1 - CA, 2 - MC+CB, 3 - CA (iter)  
ITER-CUTOFF         2.5       #    DISTANCE cutoff (for CA (iter))  
LCS_GDT             1         #    LCS and GDT calculations (1 - ON, 0 - OFF) 
########################## 
#                        # 
#      ACE results:      # 
#                        # 
########################## 
 
 
 
#          The number of residues in SS section: 117 , MODEL 117 , TARGET 117 
#          The number of residues possible to evaluate: 117 
 
 
 SECONDARY STRUCTURE PREDICTION: 
       NUM    RES   SS   Prediction   Probability 
 SSP     1     P     C     C             1.00 
 SSP     2     F     E     E             1.00 
 SSP     3     L     E     E             1.00 
 SSP     4     E     E     E             1.00 
 SSP     5     L     E     E             1.00 
 SSP     6     D     E     E             1.00 
 SSP     7     T     E     E             1.00 
 SSP     8     N     C     C             1.00 
 SSP     9     L     C     C             1.00 
 SSP    10     P     C     C             1.00 
 SSP    11     A     H     H             1.00 
 SSP    12     N     H     H             1.00 
 SSP    13     R     H     H             1.00 
 SSP    14     V     C     C             1.00 
 SSP    15     P     C     C             1.00 
 SSP    16     A     C     C             1.00 
 SSP    17     G     C     C             1.00 
 SSP    18     L     H     H             1.00 
 SSP    19     E     H     H             1.00 
 SSP    20     K     H     H             1.00 
 SSP    21     R     H     H             1.00 
 SSP    22     L     H     H             1.00 
 SSP    23     C     H     H             1.00 
 SSP    24     A     H     H             1.00 
 SSP    25     A     H     H             1.00 
 SSP    26     A     H     H             1.00 
 SSP    27     A     H     H             1.00 
 SSP    28     S     H     H             1.00 
 SSP    29     I     H     H             1.00 
 SSP    30     L     H     H             1.00 
 SSP    31     G     C     C             1.00 
 SSP    32     K     C     C             1.00 
 SSP    33     P     C     C             1.00 
 SSP    34     A     H     H             1.00 
 SSP    35     D     H     H             1.00 
 SSP    36     R     H     H             1.00 
 SSP    37     V     C     C             1.00 
 SSP    38     N     E     E             1.00 
 SSP    39     V     E     E             1.00 
 SSP    40     T     E     E             1.00 
 SSP    41     V     E     E             1.00 
 SSP    42     R     E     E             1.00 
 SSP    43     P     C     C             1.00 
 SSP    44     G     C     C             1.00 
 SSP    45     L     C     C             1.00 
 SSP    46     A     C     C             1.00 
 SSP    47     M     C     C             1.00 
 SSP    48     A     C     C             1.00 
 SSP    49     L     E     E             1.00 
 SSP    50     S     C     C             1.00 
 SSP    51     G     C     C             1.00 
 SSP    52     S     E     E             1.00 
 SSP    53     T     C     C             1.00 
 SSP    54     E     C     C             1.00 
 SSP    55     P     C     C             1.00 
 SSP    56     C     C     C             1.00 
 SSP    57     A     E     E             1.00 
 SSP    58     Q     E     E             1.00 
 SSP    59     L     E     E             1.00 
 SSP    60     S     E     E             1.00 
 SSP    61     I     E     E             1.00 
 SSP    62     S     E     E             1.00 
 SSP    63     S     E     E             1.00 
 SSP    64     I     E     E             1.00 
 SSP    65     G     C     C             1.00 
 SSP    66     V     C     C             1.00 
 SSP    67     V     C     C             1.00 
 SSP    68     G     C     C             1.00 
 SSP    69     T     C     C             1.00 
 SSP    70     A     H     H             1.00 
 SSP    71     E     H     H             1.00 
 SSP    72     D     H     H             1.00 
 SSP    73     N     H     H             1.00 
 SSP    74     R     H     H             1.00 
 SSP    75     S     H     H             1.00 
 SSP    76     H     H     H             1.00 
 SSP    77     S     H     H             1.00 
 SSP    78     A     H     H             1.00 
 SSP    79     H     H     H             1.00 
 SSP    80     F     H     H             1.00 
 SSP    81     F     H     H             1.00 
 SSP    82     E     H     H             1.00 
 SSP    83     F     H     H             1.00 
 SSP    84     L     H     H             1.00 
 SSP    85     T     H     H             1.00 
 SSP    86     K     H     H             1.00 
 SSP    87     E     H     H             1.00 
 SSP    88     L     H     H             1.00 
 SSP    89     A     C     C             1.00 
 SSP    90     L     C     C             1.00 
 SSP    91     G     C     C             1.00 
 SSP    92     Q     H     H             1.00 
 SSP    93     D     H     H             1.00 
 SSP    94     R     H     H             1.00 
 SSP    95     I     E     E             1.00 
 SSP    96     L     E     E             1.00 
 SSP    97     I     E     E             1.00 
 SSP    98     R     E     E             1.00 
 SSP    99     F     E     E             1.00 
 SSP   100     F     E     E             1.00 
 SSP   101     P     E     E             1.00 
 SSP   102     L     E     E             1.00 
 SSP   103     E     C     C             1.00 
 SSP   104     S     H     C             1.00 
 SSP   105     W     H     C             1.00 
 SSP   106     Q     H     C             1.00 
 SSP   107     I     C     C             1.00 
 SSP   108     G     E     C             1.00 
 SSP   109     K     E     C             1.00 
 SSP   110     I     C     C             1.00 
 SSP   111     G     C     C             1.00 
 SSP   112     T     E     C             1.00 
 SSP   113     V     E     C             1.00 
 SSP   114     M     H     C             1.00 
 SSP   115     T     H     C             1.00 
 SSP   116     F     H     C             1.00 
 SSP   117     L     C     C             1.00 
 
 NP      - Number of predicted residues 
 PP      - Percent of predicted residues 
 Q3      - Residues predicted correctly (H, E, C) 
 Qhelix  - Residues predicted correctly (HELIX) 
 Qstrand - Residues predicted correctly (STRAND) 
 Qcoil   - Residues predicted correctly (COIL) 
 SOV     - Segment overlap quantity 
 
                     Q3      Qhelix   Qstrand   Qcoil      PP 
 Qindex              91.5      87.2     87.9    100.0    100.0 
 
                     ALL      HELIX    STRAND    COIL      PP 
 SOV observed        87.7      87.2     87.9     88.1    100.0 
 
           Considered    Percent predicted   Percent predicted 
            segments        correctly         as wrong type 
 SEG           13              69.2               0.0 
 
         Number of wrong    Number of wrong 
             breaks             joins 
 B/J            0                 0 
 
  CONFIDENCE (P)     Average     NP    PP/BIN     Q3 
 BIN  0.90 - 1.00      1.00     117    100.0     91.5 
 
 BIN  0.00 - 1.00      1.00     117    100.0     91.5 
 
 
 
 
              predicted        number of target      total number   total number 
                as a         contacts possible in         of             of 
               contact         predicted subset:       contacts       contacts 
            percent  number    percent    number       in target    in prediction 
 CONTACTS:     0.0      0         0.0        0             0              0 
 
 
 
 CONSIDERED - explicitly provided contacts (with positive confidence) or 
              non contacts (with negative confidence) possible to evaluate 
 SEP      - Minimum separation between residues considered 
 NPC      - Number of contacts predicted correctly 
 PC(P)    - Percent of contacts predicted correctly from CONSIDERED in PREDICTION 
 PC(T)    - Percent of contacts predicted correctly from CONSIDERED in TARGET with SEP limit 
 PC(TT)   - Percent of contacts predicted correctly from TOTAL in TARGET with SEP limit 
 
                        CONSIDERED     CONSIDERED       TOTAL          TOTAL 
                      in PREDICTION    in TARGET    in PREDICTION    in TARGET 
 ALL RESIDUES USED         117             117           117            117 
 ALL CONTACTS (< 8.0A)     515             542           515            542 
 
               in PREDICTION      Predicted correctly          Submitted as        in TARGET 
                CONSIDERED     NPC   PC(P)   PC(T)   PC(TT)    NOT  predicted   CONSIDERED  TOTAL  |   SEP 
 RES CONTACTS       515        468   90.87   86.35   86.35       0     0.00         542       542  |   1-9999 
 RES CONTACTS       300        292   97.33   94.19   94.19       0     0.00         310       310  |   1-4    
 RES CONTACTS        23         18   78.26   48.65   48.65       0     0.00          37        37  |   5-8    
 RES CONTACTS       192        158   82.29   81.03   81.03       0     0.00         195       195  |   9-9999 
 
 
 
# WARNING! TARGET 884 atoms, MODEL 885 atoms, 884 common with TARGET 
           Number of atoms possible to evaluate: 884 
 
MEASURES: 
 
 
ANGLES RMS : model <-> target 
 
 (MC: PHI+PSI) DIHED RMS:      ARMSMC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    36.27           87.1   232   100.0   232     ARMSMC  
     SECONDARY STRUCTURE . .     8.50          100.0   118   100.0   118     ARMSMC  
     SURFACE . . . . . . . .    44.03           80.7   145   100.0   145     ARMSMC  
     BURIED  . . . . . . . .    16.64           97.7    87   100.0    87     ARMSMC  
 (SC: CHI1) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    82.46           50.5    95   100.0    95     ARMSSC1 
     RELIABLE SIDE CHAINS  .    82.04           51.1    88   100.0    88     ARMSSC1 
     SECONDARY STRUCTURE . .    83.49           51.9    52   100.0    52     ARMSSC1 
     SURFACE . . . . . . . .    85.84           43.6    55   100.0    55     ARMSSC1 
     BURIED  . . . . . . . .    77.57           60.0    40   100.0    40     ARMSSC1 
 (SC: CHI2) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    61.89           60.0    70   100.0    70     ARMSSC2 
     RELIABLE SIDE CHAINS  .    55.02           61.2    49   100.0    49     ARMSSC2 
     SECONDARY STRUCTURE . .    66.99           62.5    40   100.0    40     ARMSSC2 
     SURFACE . . . . . . . .    57.32           60.0    40   100.0    40     ARMSSC2 
     BURIED  . . . . . . . .    67.51           60.0    30   100.0    30     ARMSSC2 
 (SC: CHI3) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    87.69           47.8    23   100.0    23     ARMSSC3 
     RELIABLE SIDE CHAINS  .    86.99           45.0    20   100.0    20     ARMSSC3 
     SECONDARY STRUCTURE . .    83.97           41.7    12   100.0    12     ARMSSC3 
     SURFACE . . . . . . . .    92.64           44.4    18   100.0    18     ARMSSC3 
     BURIED  . . . . . . . .    66.88           60.0     5   100.0     5     ARMSSC3 
 (SC: CHI4) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    68.16           27.3    11   100.0    11     ARMSSC4 
     RELIABLE SIDE CHAINS  .    68.16           27.3    11   100.0    11     ARMSSC4 
     SECONDARY STRUCTURE . .    78.15           16.7     6   100.0     6     ARMSSC4 
     SURFACE . . . . . . . .    65.33           33.3     9   100.0     9     ARMSSC4 
     BURIED  . . . . . . . .    79.69            0.0     2   100.0     2     ARMSSC4 
 
COORDINATES RMS : model <-> target 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   5.00): 
 FRAGMENT  1    1 - 117  117  Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT   117      1 - 117      2.11     2.11 
  LCS LOCAL_SCORE:            100.00 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   2.00): 
 FRAGMENT  1    1 - 117  117  Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT   116      1 - 116      1.95     2.12 
  LCS LOCAL_SCORE:             98.32 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   1.00): 
 FRAGMENT  1    1 - 117  117  Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    65      1 - 65       0.91     2.40 
  LCS LOCAL_SCORE:             44.61 
 
 
 LCS                   LENGTH_OF_THE 
 LCS  RESIDUE  RESIDUE    CONTINUOUS  SECONDARY 
 LCS   NUMBER     NAME       SEGMENT  STRUCTURE   GDT_DATA_COLUMNS (PERCENT OF THE TARGET) 
 LCS       1       P    65  116  117       C       28  47  77  88  92  93  94  95  96  96  97  98  98  99 100 100 100 100 100 100  
 LCS       2       F    65  116  117       E       28  47  77  88  92  93  94  95  96  96  97  98  98  99 100 100 100 100 100 100  
 LCS       3       L    65  116  117       E       28  47  77  88  92  93  94  95  96  96  97  98  98  99 100 100 100 100 100 100  
 LCS       4       E    65  116  117       E       28  47  77  88  92  93  94  95  96  96  97  98  98  99 100 100 100 100 100 100  
 LCS       5       L    65  116  117       E       28  47  77  88  92  93  94  95  96  96  97  98  98  99 100 100 100 100 100 100  
 LCS       6       D    65  116  117       E       28  47  77  88  92  93  94  95  96  96  97  98  98  99 100 100 100 100 100 100  
 LCS       7       T    65  116  117       E       28  47  77  88  92  93  94  95  96  96  97  98  98  99 100 100 100 100 100 100  
 LCS       8       N    65  116  117       C       28  47  77  88  92  93  94  95  96  96  97  98  98  99 100 100 100 100 100 100  
 LCS       9       L    65  116  117       C       28  47  77  88  92  93  94  95  96  96  97  98  98  99 100 100 100 100 100 100  
 LCS      10       P    65  116  117       C       28  47  76  88  92  93  94  95  96  96  97  98  98  99 100 100 100 100 100 100  
 LCS      11       A    65  116  117       H       28  47  77  88  92  93  94  95  96  96  97  98  98  99 100 100 100 100 100 100  
 LCS      12       N    65  116  117       H       28  47  77  88  92  93  94  95  96  96  97  98  98  99 100 100 100 100 100 100  
 LCS      13       R    65  116  117       H       26  47  77  88  92  93  94  95  96  96  97  98  98  99 100 100 100 100 100 100  
 LCS      14       V    65  116  117       C       22  47  77  88  92  93  94  95  96  96  97  98  98  99 100 100 100 100 100 100  
 LCS      15       P    65  116  117       C       26  47  77  88  92  93  94  95  96  96  97  98  98  99 100 100 100 100 100 100  
 LCS      16       A    65  116  117       C       17  47  70  88  92  93  94  95  96  96  97  98  98  99 100 100 100 100 100 100  
 LCS      17       G    65  116  117       C        7  32  61  88  92  93  94  95  96  96  97  98  98  99 100 100 100 100 100 100  
 LCS      18       L    65  116  117       H       24  47  77  88  92  93  94  95  96  96  97  98  98  99 100 100 100 100 100 100  
 LCS      19       E    65  116  117       H       15  47  77  88  92  93  94  95  96  96  97  98  98  99 100 100 100 100 100 100  
 LCS      20       K    65  116  117       H       10  45  77  88  92  93  94  95  96  96  97  98  98  99 100 100 100 100 100 100  
 LCS      21       R    65  116  117       H       27  47  77  88  92  93  94  95  96  96  97  98  98  99 100 100 100 100 100 100  
 LCS      22       L    65  116  117       H       28  47  77  88  92  93  94  95  96  96  97  98  98  99 100 100 100 100 100 100  
 LCS      23       C    65  116  117       H       28  47  77  88  92  93  94  95  96  96  97  98  98  99 100 100 100 100 100 100  
 LCS      24       A    65  116  117       H       28  47  77  88  92  93  94  95  96  96  97  98  98  99 100 100 100 100 100 100  
 LCS      25       A    65  116  117       H       28  47  77  88  92  93  94  95  96  96  97  98  98  99 100 100 100 100 100 100  
 LCS      26       A    65  116  117       H       28  47  77  88  92  93  94  95  96  96  97  98  98  99 100 100 100 100 100 100  
 LCS      27       A    65  116  117       H       28  47  77  88  92  93  94  95  96  96  97  98  98  99 100 100 100 100 100 100  
 LCS      28       S    65  116  117       H       28  47  77  88  92  93  94  95  96  96  97  98  98  99 100 100 100 100 100 100  
 LCS      29       I    65  116  117       H       28  47  77  88  92  93  94  95  96  96  97  98  98  99 100 100 100 100 100 100  
 LCS      30       L    65  116  117       H       26  47  77  88  92  93  94  95  96  96  97  98  98  99 100 100 100 100 100 100  
 LCS      31       G    65  116  117       C       26  47  77  88  92  93  94  95  96  96  97  98  98  99 100 100 100 100 100 100  
 LCS      32       K    65  116  117       C       28  47  77  88  92  93  94  95  96  96  97  98  98  99 100 100 100 100 100 100  
 LCS      33       P    65  116  117       C       28  47  77  88  92  93  94  95  96  96  97  98  98  99 100 100 100 100 100 100  
 LCS      34       A    65  116  117       H       26  47  77  88  92  93  94  95  96  96  97  98  98  99 100 100 100 100 100 100  
 LCS      35       D    65  116  117       H       22  46  77  88  92  93  94  95  96  96  97  98  98  99 100 100 100 100 100 100  
 LCS      36       R    65  116  117       H       26  47  77  88  92  93  94  95  96  96  97  98  98  99 100 100 100 100 100 100  
 LCS      37       V    65  116  117       C       28  47  77  88  92  93  94  95  96  96  97  98  98  99 100 100 100 100 100 100  
 LCS      38       N    65  116  117       E       28  47  77  88  92  93  94  95  96  96  97  98  98  99 100 100 100 100 100 100  
 LCS      39       V    65  116  117       E       28  47  77  88  92  93  94  95  96  96  97  98  98  99 100 100 100 100 100 100  
 LCS      40       T    65  116  117       E       28  47  77  88  92  93  94  95  96  96  97  98  98  99 100 100 100 100 100 100  
 LCS      41       V    65  116  117       E       28  47  77  88  92  93  94  95  96  96  97  98  98  99 100 100 100 100 100 100  
 LCS      42       R    65  116  117       E       28  47  77  88  92  93  94  95  96  96  97  98  98  99 100 100 100 100 100 100  
 LCS      43       P    65  116  117       C       28  47  77  88  92  93  94  95  96  96  97  98  98  99 100 100 100 100 100 100  
 LCS      44       G    65  116  117       C       28  47  77  88  92  93  94  95  96  96  97  98  98  99 100 100 100 100 100 100  
 LCS      45       L    65  116  117       C       28  47  77  88  92  93  94  95  96  96  97  98  98  99 100 100 100 100 100 100  
 LCS      46       A    65  116  117       C       22  47  77  88  92  93  94  95  96  96  97  98  98  99 100 100 100 100 100 100  
 LCS      47       M    65  116  117       C       22  45  77  88  92  93  94  95  96  96  97  98  98  99 100 100 100 100 100 100  
 LCS      48       A    65  116  117       C       16  47  77  88  92  93  94  95  96  96  97  98  98  99 100 100 100 100 100 100  
 LCS      49       L    65  116  117       E        9  35  77  88  92  93  94  95  96  96  97  98  98  99 100 100 100 100 100 100  
 LCS      50       S    65  116  117       C        8  23  54  77  92  93  94  95  96  96  97  98  98  99 100 100 100 100 100 100  
 LCS      51       G    65  116  117       C       10  26  58  87  92  93  94  95  96  96  97  98  98  99 100 100 100 100 100 100  
 LCS      52       S    65  116  117       E       10  35  77  88  92  93  94  95  96  96  97  98  98  99 100 100 100 100 100 100  
 LCS      53       T    65  116  117       C       10  45  77  88  92  93  94  95  96  96  97  98  98  99 100 100 100 100 100 100  
 LCS      54       E    65  116  117       C       26  47  77  88  92  93  94  95  96  96  97  98  98  99 100 100 100 100 100 100  
 LCS      55       P    65  116  117       C       28  47  77  88  92  93  94  95  96  96  97  98  98  99 100 100 100 100 100 100  
 LCS      56       C    65  116  117       C       22  46  77  88  92  93  94  95  96  96  97  98  98  99 100 100 100 100 100 100  
 LCS      57       A    65  116  117       E       17  42  77  88  92  93  94  95  96  96  97  98  98  99 100 100 100 100 100 100  
 LCS      58       Q    65  116  117       E       16  39  77  88  92  93  94  95  96  96  97  98  98  99 100 100 100 100 100 100  
 LCS      59       L    65  116  117       E       16  42  77  88  92  93  94  95  96  96  97  98  98  99 100 100 100 100 100 100  
 LCS      60       S    65  116  117       E       28  47  77  88  92  93  94  95  96  96  97  98  98  99 100 100 100 100 100 100  
 LCS      61       I    65  116  117       E       28  47  77  88  92  93  94  95  96  96  97  98  98  99 100 100 100 100 100 100  
 LCS      62       S    65  116  117       E       28  47  77  88  92  93  94  95  96  96  97  98  98  99 100 100 100 100 100 100  
 LCS      63       S    65  116  117       E       28  47  77  88  92  93  94  95  96  96  97  98  98  99 100 100 100 100 100 100  
 LCS      64       I    65  116  117       E       28  47  77  88  92  93  94  95  96  96  97  98  98  99 100 100 100 100 100 100  
 LCS      65       G    65  116  117       C       16  47  72  87  92  93  94  95  96  96  97  98  98  99 100 100 100 100 100 100  
 LCS      66       V     4  116  117       C        2   3   3   4   5   6  14  27  82  88  95  97  98  98 100 100 100 100 100 100  
 LCS      67       V     4  116  117       C        2   3   3   4   5   6   6  14  58  94  95  98  98  99 100 100 100 100 100 100  
 LCS      68       G    43  116  117       C        8  38  63  88  92  93  94  95  96  96  97  98  98  99 100 100 100 100 100 100  
 LCS      69       T    43  116  117       C       11  38  61  88  92  93  94  95  96  96  97  98  98  99 100 100 100 100 100 100  
 LCS      70       A    43  116  117       H       16  43  76  88  92  93  94  95  96  96  97  98  98  99 100 100 100 100 100 100  
 LCS      71       E    43  116  117       H       13  30  61  85  92  93  94  95  96  96  97  98  98  99 100 100 100 100 100 100  
 LCS      72       D    43  116  117       H       14  38  71  88  92  93  94  95  96  96  97  98  98  99 100 100 100 100 100 100  
 LCS      73       N    43  116  117       H       14  43  77  88  92  93  94  95  96  96  97  98  98  99 100 100 100 100 100 100  
 LCS      74       R    43  116  117       H       16  38  77  88  92  93  94  95  96  96  97  98  98  99 100 100 100 100 100 100  
 LCS      75       S    43  116  117       H       16  38  73  88  92  93  94  95  96  96  97  98  98  99 100 100 100 100 100 100  
 LCS      76       H    43  116  117       H       15  33  73  88  92  93  94  95  96  96  97  98  98  99 100 100 100 100 100 100  
 LCS      77       S    43  116  117       H       16  39  77  88  92  93  94  95  96  96  97  98  98  99 100 100 100 100 100 100  
 LCS      78       A    43  116  117       H       16  39  77  88  92  93  94  95  96  96  97  98  98  99 100 100 100 100 100 100  
 LCS      79       H    43  116  117       H       16  38  77  88  92  93  94  95  96  96  97  98  98  99 100 100 100 100 100 100  
 LCS      80       F    43  116  117       H       16  39  77  88  92  93  94  95  96  96  97  98  98  99 100 100 100 100 100 100  
 LCS      81       F    43  116  117       H       16  39  77  88  92  93  94  95  96  96  97  98  98  99 100 100 100 100 100 100  
 LCS      82       E    43  116  117       H       13  39  77  88  92  93  94  95  96  96  97  98  98  99 100 100 100 100 100 100  
 LCS      83       F    43  116  117       H       12  38  73  88  92  93  94  95  96  96  97  98  98  99 100 100 100 100 100 100  
 LCS      84       L    43  116  117       H       11  38  73  88  92  93  94  95  96  96  97  98  98  99 100 100 100 100 100 100  
 LCS      85       T    43  116  117       H       10  40  77  88  92  93  94  95  96  96  97  98  98  99 100 100 100 100 100 100  
 LCS      86       K    43  116  117       H       10  40  77  88  92  93  94  95  96  96  97  98  98  99 100 100 100 100 100 100  
 LCS      87       E    43  116  117       H        7  40  77  88  92  93  94  95  96  96  97  98  98  99 100 100 100 100 100 100  
 LCS      88       L    43  116  117       H       16  45  77  88  92  93  94  95  96  96  97  98  98  99 100 100 100 100 100 100  
 LCS      89       A    43  116  117       C       12  39  77  88  92  93  94  95  96  96  97  98  98  99 100 100 100 100 100 100  
 LCS      90       L    43  116  117       C        6  38  77  88  92  93  94  95  96  96  97  98  98  99 100 100 100 100 100 100  
 LCS      91       G    43  116  117       C        7  38  77  88  92  93  94  95  96  96  97  98  98  99 100 100 100 100 100 100  
 LCS      92       Q    43  116  117       H        8  38  77  88  92  93  94  95  96  96  97  98  98  99 100 100 100 100 100 100  
 LCS      93       D    43  116  117       H       24  47  77  88  92  93  94  95  96  96  97  98  98  99 100 100 100 100 100 100  
 LCS      94       R    43  116  117       H       22  43  76  88  92  93  94  95  96  96  97  98  98  99 100 100 100 100 100 100  
 LCS      95       I    43  116  117       E       22  43  77  88  92  93  94  95  96  96  97  98  98  99 100 100 100 100 100 100  
 LCS      96       L    43  116  117       E       22  46  77  88  92  93  94  95  96  96  97  98  98  99 100 100 100 100 100 100  
 LCS      97       I    43  116  117       E       22  47  77  88  92  93  94  95  96  96  97  98  98  99 100 100 100 100 100 100  
 LCS      98       R    43  116  117       E       28  47  77  88  92  93  94  95  96  96  97  98  98  99 100 100 100 100 100 100  
 LCS      99       F    43  116  117       E       28  47  77  88  92  93  94  95  96  96  97  98  98  99 100 100 100 100 100 100  
 LCS     100       F    43  116  117       E       19  47  77  88  92  93  94  95  96  96  97  98  98  99 100 100 100 100 100 100  
 LCS     101       P    43  116  117       E       17  46  77  88  92  93  94  95  96  96  97  98  98  99 100 100 100 100 100 100  
 LCS     102       L    43  116  117       E       23  47  77  88  92  93  94  95  96  96  97  98  98  99 100 100 100 100 100 100  
 LCS     103       E    43  116  117       C       17  43  77  88  92  93  94  95  96  96  97  98  98  99 100 100 100 100 100 100  
 LCS     104       S    43  116  117       H        3  21  65  88  92  93  94  95  96  96  97  98  98  99 100 100 100 100 100 100  
 LCS     105       W    43  116  117       H       10  38  77  88  92  93  94  95  96  96  97  98  98  99 100 100 100 100 100 100  
 LCS     106       Q    43  116  117       H       13  39  77  88  92  93  94  95  96  96  97  98  98  99 100 100 100 100 100 100  
 LCS     107       I    43  116  117       C        5  43  77  88  92  93  94  95  96  96  97  98  98  99 100 100 100 100 100 100  
 LCS     108       G    43  116  117       E        5  41  77  88  92  93  94  95  96  96  97  98  98  99 100 100 100 100 100 100  
 LCS     109       K    43  116  117       E        5  46  77  88  92  93  94  95  96  96  97  98  98  99 100 100 100 100 100 100  
 LCS     110       I    43  116  117       C        5  41  77  88  92  93  94  95  96  96  97  98  98  99 100 100 100 100 100 100  
 LCS     111       G     4  116  117       C        2   3   3  41  67  83  94  95  96  96  97  98  98  99 100 100 100 100 100 100  
 LCS     112       T     4  116  117       E        0   7  17  41  67  83  88  95  96  96  97  98  98  99 100 100 100 100 100 100  
 LCS     113       V     4  116  117       E        2   3   3   4   5  82  94  95  96  96  97  98  98  99 100 100 100 100 100 100  
 LCS     114       M     4  116  117       H        2   2   3   4   5   5  53  94  96  96  97  98  98  99 100 100 100 100 100 100  
 LCS     115       T     3  116  117       H        2  17  48  65  88  93  94  95  96  96  97  98  98  99 100 100 100 100 100 100  
 LCS     116       F     3  116  117       H        0   2   2  23  30  43  69  82  95  96  97  98  98  99 100 100 100 100 100 100  
 LCS     117       L     3    3  117       C        1   2   2   2   2   2   3  28  70  88  96  97  98  99 100 100 100 100 100 100  
 LCS TOTAL_SCORE (RMS CUTOFF   1.00):  44.61 
 
 NUMBER_OF_CA_Tg:  117      NUMBER_OF_CA_Pr:  117      PERCENT_OF_CA: 100.00  
 
GLOBAL_DISTANCE_TEST (the largest set of residues under DISTANCE_CUTOFF (using LCS results)): 
 GDT DISTANCE_CUTOFF     0.50    1.00    1.50    2.00    2.50    3.00    3.50    4.00    4.50    5.00    5.50    6.00    6.50    7.00    7.50    8.00    8.50    9.00    9.50   10.00  
 GDT NUMBER_OF_CA_max      33      55      91     103     108     109     110     112     113     113     114     115     115     116     117     117     117     117     117     117  
 GDT PERCENT_OF_CA_Pr   28.21   47.01   77.78   88.03   92.31   93.16   94.02   95.73   96.58   96.58   97.44   98.29   98.29   99.15  100.00  100.00  100.00  100.00  100.00  100.00 
 GDT PERCENT_OF_CA_Tg   28.21   47.01   77.78   88.03   92.31   93.16   94.02   95.73   96.58   96.58   97.44   98.29   98.29   99.15  100.00  100.00  100.00  100.00  100.00  100.00 
 GDT FRAGMENT: Beg-End   1-99    1-99    1-110   1-110   1-110   1-115   1-115   1-115   1-115   1-115   1-116   1-116   1-116   1-117   1-117   1-117   1-117   1-117   1-117   1-117 
 GDT RMS_LOCAL           0.33    0.60    1.03    1.15    1.22    1.27    1.33    1.53    1.58    1.58    1.70    1.81    1.81    1.98    2.11    2.11    2.11    2.11    2.11    2.11 
 GDT RMS_ALL_CA          2.47    2.45    2.19    2.18    2.18    2.17    2.16    2.13    2.12    2.12    2.12    2.12    2.12    2.11    2.11    2.11    2.11    2.11    2.11    2.11 
 
 
 TEST (CA)  RMS =   2.11               (Number of atoms:  117) 
 
 (CA)  RMS:                   CRMSCA         NP     PP     TN 
     ALL . . . . . . . . . .    2.11        117   100.0   117     CRMSCA  
     CRN = ALL/NP  . . . . .    0.0180                            CRMSCA  
     SECONDARY STRUCTURE . .    1.15         59   100.0    59     CRMSCA  
     SURFACE . . . . . . . .    2.41         73   100.0    73     CRMSCA  
     BURIED  . . . . . . . .    1.49         44   100.0    44     CRMSCA  
 (MC)  RMS:                   CRMSMC         NP     PP     TN 
     ALL . . . . . . . . . .    2.16        576   100.0   576     CRMSMC  
     SECONDARY STRUCTURE . .    1.17        295   100.0   295     CRMSMC  
     SURFACE . . . . . . . .    2.48        356   100.0   356     CRMSMC  
     BURIED  . . . . . . . .    1.51        220   100.0   220     CRMSMC  
 (SC)  RMS:                   CRMSSC         NP     PP     TN 
     ALL . . . . . . . . . .    3.85        416   100.0   416     CRMSSC  
     RELIABLE SIDE CHAINS  .    3.73        350   100.0   350     CRMSSC  
     SECONDARY STRUCTURE . .    2.83        237   100.0   237     CRMSSC  
     SURFACE . . . . . . . .    4.57        247   100.0   247     CRMSSC  
     BURIED  . . . . . . . .    2.46        169   100.0   169     CRMSSC  
 (ALL) RMS:                   CRMSALL        NP     PP     TN 
     ALL . . . . . . . . . .    3.04        884   100.0   884     CRMSALL 
     SECONDARY STRUCTURE . .    2.16        473   100.0   473     CRMSALL 
     SURFACE . . . . . . . .    3.55        539   100.0   539     CRMSALL 
     BURIED  . . . . . . . .    2.00        345   100.0   345     CRMSALL 
 
Accuracy of estimates of atomic coordinate errors: model <-> target 
 
 (CA)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    1.567      0.997       0.498    117   100.0   117     ERRCA  
     SECONDARY STRUCTURE . .    1.041      1.000       0.500     59   100.0    59     ERRCA  
     SURFACE . . . . . . . .    1.807      0.997       0.498     73   100.0    73     ERRCA  
     BURIED  . . . . . . . .    1.169      0.997       0.499     44   100.0    44     ERRCA  
 (MC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    1.592      0.997       0.499    576   100.0   576     ERRMC  
     SECONDARY STRUCTURE . .    1.062      1.000       0.500    295   100.0   295     ERRMC  
     SURFACE . . . . . . . .    1.845      0.997       0.499    356   100.0   356     ERRMC  
     BURIED  . . . . . . . .    1.182      0.997       0.499    220   100.0   220     ERRMC  
 (SC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    2.852      0.998       0.499    416   100.0   416     ERRSC  
     RELIABLE SIDE CHAINS  .    2.775      0.998       0.499    350   100.0   350     ERRSC  
     SECONDARY STRUCTURE . .    2.261      1.000       0.500    237   100.0   237     ERRSC  
     SURFACE . . . . . . . .    3.499      0.998       0.499    247   100.0   247     ERRSC  
     BURIED  . . . . . . . .    1.906      0.998       0.499    169   100.0   169     ERRSC  
 (ALL) ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    2.160      0.997       0.499    884   100.0   884     ERRALL 
     SECONDARY STRUCTURE . .    1.654      1.000       0.500    473   100.0   473     ERRALL 
     SURFACE . . . . . . . .    2.566      0.997       0.499    539   100.0   539     ERRALL 
     BURIED  . . . . . . . .    1.525      0.998       0.499    345   100.0   345     ERRALL 
 
 
 
DISTANCES: Percent of total atoms where distance (target <-> model) in global 
           superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms 
            D < 1     D < 2     D < 3     D < 5    D < 10      NP      TN 
CA  (N)        34       102       108       111       117     117     117   DISTCA 
CA  (P)     29.06     87.18     92.31     94.87    100.00             117   DISTCA 
CA  (RMS)    0.65      1.24      1.31      1.45      2.11                   DISTCA 
 
ALL (N)       219       624       721       800       868     884     884   DISTALL 
ALL (P)     24.77     70.59     81.56     90.50     98.19             884   DISTALL 
ALL (RMS)    0.70      1.25      1.46      1.84      2.62                   DISTALL 
 
 
 
 
END of the results output 
