 
####################################################### 
#                                                     # 
#                        ACE                          # 
#                                                     # 
#        Ab-initio protein structure prediction       # 
#                         &                           # 
#               Comparative modeling                  # 
#                                                     # 
#                     Evaluator                       # 
#                                                     # 
#                ----------------- 11/1998            # 
#                                                     # 
#                         by                          # 
#           Adam Zemla & Ceslovas Venclovas           # 
#                                                     # 
#         Protein Structure Prediction Center         # 
#      Lawrence Livermore National Laboratory, CA     # 
#                                                     # 
####################################################### 
########################## 
#                        # 
#    ACE parameters:     # 
#                        # 
########################## 
# 
# MEASURES: 
# 
# For AB: 0 3 9 13 14 
# For CM: 0 1 2 3 6 7 8 9 10 11 12 13 14 18 
# 
ARMSMC  0 1 2     7 8 9    11 12 13 14 18 
ARMSSC  0 1 2 3 6 7 8 9    11 12 13 14 18 
# 
CRMSCA  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSMC  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSSC  0 1 2 3 6     9    11 12 13 14 18 
CRMSALL 0 1 2     7 8 9    11 12 13 14 18 
# 
D-E_CA  0 1 2     7 8 9    11 12 13 14 18 
D-E_MC  0 1 2     7 8 9    11 12 13 14 18 
D-E_SC  0 1 2 3 6 7 8 9    11 12 13 14 18 
D-E_ALL 0 1 2     7 8 9    11 12 13 14 18 
# 
# Output parameters 
# 
DIHED-OUTPUT        0         #    1 - ON, 0 - OFF 
RES-CONTACTS        0         #    1 - ON, 0 - OFF 
SS-OUTPUT           1         #    1 - ON, 0 - OFF 
PHI-PSI             0         #    1 - SEPARATELY, 0 - NO  
# 
# Calculation parameters 
# 
SOV-METHOD          1         #    0 - SOV 94,  1 - SOV 
# 
TEMP-FACTOR         30.0      #    Target structure temperature factor cutoff 
ACCESS-CUTOFF       0.20      #    Solvent accessibility cutoff   
ANGLES-CORRECT      30.0      #    target-model  (diff < 30.0)    
DSSP-HELIX          6         #    Secondary Structure subset: helix cutoff  
DSSP-STRAND         3         #    Secondary Structure subset: strand cutoff 
ROTAMERS-LIMIT      30.0      #    target-parent (diff > 30.0) 
ROTATION-MATRIX     0         #    1 - ON, 0 - OFF   
SC-SWAPPING         1         #    1 - ON, 0 - OFF    
SEP-CONTACTS        1         #    Separation interval along the chain 
RESIDUE-CONTACTS    8.0       #    Contact definition between two C-beta atoms 
# 
CRMS-METHOD         1         #    0 - ALL, 1 - CA, 2 - MC+CB, 3 - CA (iter)  
ITER-CUTOFF         2.5       #    DISTANCE cutoff (for CA (iter))  
LCS_GDT             1         #    LCS and GDT calculations (1 - ON, 0 - OFF) 
########################## 
#                        # 
#      ACE results:      # 
#                        # 
########################## 
 
 
 
# WARNING! The number of residues in SS section: 112 , MODEL 112 , TARGET 117 
#          The number of residues possible to evaluate: 112 
 
 
 SECONDARY STRUCTURE PREDICTION: 
       NUM    RES   SS   Prediction   Probability 
 SSP     1     P     C     C             1.00 
 SSP     2     F     E     E             1.00 
 SSP     3     L     E     E             1.00 
 SSP     4     E     E     E             1.00 
 SSP     5     L     E     E             1.00 
 SSP     6     D     E     E             1.00 
 SSP     7     T     E     E             1.00 
 SSP     8     N     C     C             1.00 
 SSP     9     L     C     C             1.00 
 SSP    10     P     C     C             1.00 
 SSP    11     A     H     H             1.00 
 SSP    12     N     H     H             1.00 
 SSP    13     R     H     H             1.00 
 SSP    14     V     C     C             1.00 
 SSP    15     P     C     C             1.00 
 SSP    16     A     C     C             1.00 
 SSP    17     G     C     C             1.00 
 SSP    18     L     H     H             1.00 
 SSP    19     E     H     H             1.00 
 SSP    20     K     H     H             1.00 
 SSP    21     R     H     H             1.00 
 SSP    22     L     H     H             1.00 
 SSP    23     C     H     H             1.00 
 SSP    24     A     H     H             1.00 
 SSP    25     A     H     H             1.00 
 SSP    26     A     H     H             1.00 
 SSP    27     A     H     H             1.00 
 SSP    28     S     H     H             1.00 
 SSP    29     I     H     H             1.00 
 SSP    30     L     H     H             1.00 
 SSP    31     G     C     C             1.00 
 SSP    32     K     C     C             1.00 
 SSP    33     P     C     C             1.00 
 SSP    34     A     H     H             1.00 
 SSP    35     D     H     H             1.00 
 SSP    36     R     H     H             1.00 
 SSP    37     V     C     C             1.00 
 SSP    38     N     E     E             1.00 
 SSP    39     V     E     E             1.00 
 SSP    40     T     E     E             1.00 
 SSP    41     V     E     E             1.00 
 SSP    42     R     E     E             1.00 
 SSP    43     P     C     C             1.00 
 SSP    44     G     C     C             1.00 
 SSP    45     L     C     C             1.00 
 SSP    46     A     C     C             1.00 
 SSP    47     M     C     C             1.00 
 SSP    48     A     C     C             1.00 
 SSP    49     L     E     E             1.00 
 SSP    50     S     C     C             1.00 
 SSP    51     G     C     C             1.00 
 SSP    52     S     E     E             1.00 
 SSP    53     T     C     C             1.00 
 SSP    54     E     C     C             1.00 
 SSP    55     P     C     C             1.00 
 SSP    56     C     C     C             1.00 
 SSP    57     A     E     E             1.00 
 SSP    58     Q     E     E             1.00 
 SSP    59     L     E     E             1.00 
 SSP    60     S     E     E             1.00 
 SSP    61     I     E     E             1.00 
 SSP    62     S     E     E             1.00 
 SSP    63     S     E     E             1.00 
 SSP    64     I     E     C             1.00 
 SSP    65     G     C     C             1.00 
 SSP    66     V     C     C             1.00 
 SSP    67     V     C     C             1.00 
 SSP  BREAK 
 SSP    71     E     H     C             1.00 
 SSP    72     D     H     H             1.00 
 SSP    73     N     H     H             1.00 
 SSP    74     R     H     H             1.00 
 SSP    75     S     H     H             1.00 
 SSP    76     H     H     H             1.00 
 SSP    77     S     H     H             1.00 
 SSP    78     A     H     H             1.00 
 SSP    79     H     H     H             1.00 
 SSP    80     F     H     H             1.00 
 SSP    81     F     H     H             1.00 
 SSP    82     E     H     H             1.00 
 SSP    83     F     H     H             1.00 
 SSP    84     L     H     H             1.00 
 SSP    85     T     H     H             1.00 
 SSP    86     K     H     H             1.00 
 SSP    87     E     H     H             1.00 
 SSP    88     L     H     H             1.00 
 SSP    89     A     C     C             1.00 
 SSP    90     L     C     C             1.00 
 SSP    91     G     C     C             1.00 
 SSP    92     Q     H     H             1.00 
 SSP    93     D     H     H             1.00 
 SSP    94     R     H     H             1.00 
 SSP    95     I     E     E             1.00 
 SSP    96     L     E     E             1.00 
 SSP    97     I     E     E             1.00 
 SSP    98     R     E     E             1.00 
 SSP    99     F     E     E             1.00 
 SSP   100     F     E     E             1.00 
 SSP   101     P     E     E             1.00 
 SSP   102     L     E     C             1.00 
 SSP   103     E     C     C             1.00 
 SSP   104     S     H     C             1.00 
 SSP   105     W     H     C             1.00 
 SSP   106     Q     H     C             1.00 
 SSP   107     I     C     C             1.00 
 SSP   108     G     E     E             1.00 
 SSP   109     K     E     E             1.00 
 SSP   110     I     C     C             1.00 
 SSP   111     G     C     C             1.00 
 SSP   112     T     E     E             1.00 
 SSP   113     V     E     E             1.00 
 SSP   114     M     H     C             1.00 
 SSP   115     T     H     C             1.00 
 
 NP      - Number of predicted residues 
 PP      - Percent of predicted residues 
 Q3      - Residues predicted correctly (H, E, C) 
 Qhelix  - Residues predicted correctly (HELIX) 
 Qstrand - Residues predicted correctly (STRAND) 
 Qcoil   - Residues predicted correctly (COIL) 
 SOV     - Segment overlap quantity 
 
                     Q3      Qhelix   Qstrand   Qcoil      PP 
 Qindex              92.9      86.7     93.9    100.0     95.7 
 
                     ALL      HELIX    STRAND    COIL      PP 
 SOV observed        94.0      88.9    100.0     95.1     95.7 
 
           Considered    Percent predicted   Percent predicted 
            segments        correctly         as wrong type 
 SEG           13              84.6               0.0 
 
         Number of wrong    Number of wrong 
             breaks             joins 
 B/J            0                 0 
 
  CONFIDENCE (P)     Average     NP    PP/BIN     Q3 
 BIN  0.90 - 1.00      1.00     112    100.0     92.9 
 
 BIN  0.00 - 1.00      1.00     112    100.0     92.9 
 
 
 
 
              predicted        number of target      total number   total number 
                as a         contacts possible in         of             of 
               contact         predicted subset:       contacts       contacts 
            percent  number    percent    number       in target    in prediction 
 CONTACTS:     0.0      0         0.0        0             0              0 
 
 
 
 CONSIDERED - explicitly provided contacts (with positive confidence) or 
              non contacts (with negative confidence) possible to evaluate 
 SEP      - Minimum separation between residues considered 
 NPC      - Number of contacts predicted correctly 
 PC(P)    - Percent of contacts predicted correctly from CONSIDERED in PREDICTION 
 PC(T)    - Percent of contacts predicted correctly from CONSIDERED in TARGET with SEP limit 
 PC(TT)   - Percent of contacts predicted correctly from TOTAL in TARGET with SEP limit 
 
                        CONSIDERED     CONSIDERED       TOTAL          TOTAL 
                      in PREDICTION    in TARGET    in PREDICTION    in TARGET 
 ALL RESIDUES USED          41              41            41            117 
 ALL CONTACTS (< 8.0A)      76              74            76            542 
 
               in PREDICTION      Predicted correctly          Submitted as        in TARGET 
                CONSIDERED     NPC   PC(P)   PC(T)   PC(TT)    NOT  predicted   CONSIDERED  TOTAL  |   SEP 
 RES CONTACTS        76         70   92.11   94.59   12.92       0     0.00          74       542  |   1-9999 
 RES CONTACTS        35         34   97.14   94.44   10.97       0     0.00          36       310  |   1-4    
 RES CONTACTS         5          4   80.00   80.00   10.81       0     0.00           5        37  |   5-8    
 RES CONTACTS        36         32   88.89   96.97   16.41       0     0.00          33       195  |   9-9999 
 
 
 
# WARNING! TARGET 884 atoms, MODEL 575 atoms, 575 common with TARGET 
           Number of atoms possible to evaluate: 556 
 
MEASURES: 
 
 
ANGLES RMS : model <-> target 
 
 (MC: PHI+PSI) DIHED RMS:      ARMSMC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    32.67           93.2   220    94.8   232     ARMSMC  
     SECONDARY STRUCTURE . .    20.75           94.8   115    97.5   118     ARMSMC  
     SURFACE . . . . . . . .    40.48           91.0   134    92.4   145     ARMSMC  
     BURIED  . . . . . . . .    13.28           96.5    86    98.9    87     ARMSMC  
 (SC: CHI1) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    47.41           75.9    29    30.5    95     ARMSSC1 
     RELIABLE SIDE CHAINS  .    50.02           73.1    26    29.5    88     ARMSSC1 
     SECONDARY STRUCTURE . .    54.47           71.4    14    26.9    52     ARMSSC1 
     SURFACE . . . . . . . .    64.51           61.5    13    23.6    55     ARMSSC1 
     BURIED  . . . . . . . .    26.34           87.5    16    40.0    40     ARMSSC1 
 (SC: CHI2) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    59.87           78.9    19    27.1    70     ARMSSC2 
     RELIABLE SIDE CHAINS  .    42.29           85.7    14    28.6    49     ARMSSC2 
     SECONDARY STRUCTURE . .    47.00           85.7     7    17.5    40     ARMSSC2 
     SURFACE . . . . . . . .    28.02           88.9     9    22.5    40     ARMSSC2 
     BURIED  . . . . . . . .    78.12           70.0    10    33.3    30     ARMSSC2 
 (SC: CHI3) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    81.39           40.0     5    21.7    23     ARMSSC3 
     RELIABLE SIDE CHAINS  .    81.39           40.0     5    25.0    20     ARMSSC3 
     SECONDARY STRUCTURE . .   105.45            0.0     1     8.3    12     ARMSSC3 
     SURFACE . . . . . . . .    84.48            0.0     2    11.1    18     ARMSSC3 
     BURIED  . . . . . . . .    79.27           66.7     3    60.0     5     ARMSSC3 
 (SC: CHI4) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    70.06            0.0     3    27.3    11     ARMSSC4 
     RELIABLE SIDE CHAINS  .    70.06            0.0     3    27.3    11     ARMSSC4 
     SECONDARY STRUCTURE . .    73.77            0.0     1    16.7     6     ARMSSC4 
     SURFACE . . . . . . . .    73.77            0.0     1    11.1     9     ARMSSC4 
     BURIED  . . . . . . . .    68.13            0.0     2   100.0     2     ARMSSC4 
 
COORDINATES RMS : model <-> target 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   5.00): 
 FRAGMENT  1    1 - 115  115  Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT   115      1 - 115      1.21     1.21 
  LCS LOCAL_SCORE:            100.00 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   2.00): 
 FRAGMENT  1    1 - 115  115  Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT   115      1 - 115      1.21     1.21 
  LCS LOCAL_SCORE:            100.00 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   1.00): 
 FRAGMENT  1    1 - 115  115  Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    67      1 - 67       0.98     1.39 
  LCS LOCAL_SCORE:             52.81 
 
 
 LCS                   LENGTH_OF_THE 
 LCS  RESIDUE  RESIDUE    CONTINUOUS  SECONDARY 
 LCS   NUMBER     NAME       SEGMENT  STRUCTURE   GDT_DATA_COLUMNS (PERCENT OF THE TARGET) 
 LCS       1       P    67  115  115       C       27  47  82  94  97  98  98  98  98  98  98  98  98  98  98  98  98  98  98  98  
 LCS       2       F    67  115  115       E       27  47  82  94  97  98  98  98  98  98  98  98  98  98  98  98  98  98  98  98  
 LCS       3       L    67  115  115       E       27  47  82  94  97  98  98  98  98  98  98  98  98  98  98  98  98  98  98  98  
 LCS       4       E    67  115  115       E       27  47  82  94  97  98  98  98  98  98  98  98  98  98  98  98  98  98  98  98  
 LCS       5       L    67  115  115       E       27  47  82  94  97  98  98  98  98  98  98  98  98  98  98  98  98  98  98  98  
 LCS       6       D    67  115  115       E       27  47  82  94  97  98  98  98  98  98  98  98  98  98  98  98  98  98  98  98  
 LCS       7       T    67  115  115       E       27  47  82  94  97  98  98  98  98  98  98  98  98  98  98  98  98  98  98  98  
 LCS       8       N    67  115  115       C       27  47  82  94  97  98  98  98  98  98  98  98  98  98  98  98  98  98  98  98  
 LCS       9       L    67  115  115       C       27  47  82  94  97  98  98  98  98  98  98  98  98  98  98  98  98  98  98  98  
 LCS      10       P    67  115  115       C       25  45  82  94  97  98  98  98  98  98  98  98  98  98  98  98  98  98  98  98  
 LCS      11       A    67  115  115       H       27  47  82  94  97  98  98  98  98  98  98  98  98  98  98  98  98  98  98  98  
 LCS      12       N    67  115  115       H       27  47  82  94  97  98  98  98  98  98  98  98  98  98  98  98  98  98  98  98  
 LCS      13       R    67  115  115       H        5  45  81  94  97  98  98  98  98  98  98  98  98  98  98  98  98  98  98  98  
 LCS      14       V    67  115  115       C       15  43  82  94  97  98  98  98  98  98  98  98  98  98  98  98  98  98  98  98  
 LCS      15       P    67  115  115       C       17  45  82  94  97  98  98  98  98  98  98  98  98  98  98  98  98  98  98  98  
 LCS      16       A    67  115  115       C       16  44  77  94  97  98  98  98  98  98  98  98  98  98  98  98  98  98  98  98  
 LCS      17       G    67  115  115       C        7  29  64  92  97  98  98  98  98  98  98  98  98  98  98  98  98  98  98  98  
 LCS      18       L    67  115  115       H       22  45  82  94  97  98  98  98  98  98  98  98  98  98  98  98  98  98  98  98  
 LCS      19       E    67  115  115       H       11  45  82  94  97  98  98  98  98  98  98  98  98  98  98  98  98  98  98  98  
 LCS      20       K    67  115  115       H        7  41  77  94  97  98  98  98  98  98  98  98  98  98  98  98  98  98  98  98  
 LCS      21       R    67  115  115       H       27  47  82  94  97  98  98  98  98  98  98  98  98  98  98  98  98  98  98  98  
 LCS      22       L    67  115  115       H       27  47  82  94  97  98  98  98  98  98  98  98  98  98  98  98  98  98  98  98  
 LCS      23       C    67  115  115       H       27  47  82  94  97  98  98  98  98  98  98  98  98  98  98  98  98  98  98  98  
 LCS      24       A    67  115  115       H       26  47  82  94  97  98  98  98  98  98  98  98  98  98  98  98  98  98  98  98  
 LCS      25       A    67  115  115       H       25  47  82  94  97  98  98  98  98  98  98  98  98  98  98  98  98  98  98  98  
 LCS      26       A    67  115  115       H       27  47  82  94  97  98  98  98  98  98  98  98  98  98  98  98  98  98  98  98  
 LCS      27       A    67  115  115       H       26  47  82  94  97  98  98  98  98  98  98  98  98  98  98  98  98  98  98  98  
 LCS      28       S    67  115  115       H       25  45  82  94  97  98  98  98  98  98  98  98  98  98  98  98  98  98  98  98  
 LCS      29       I    67  115  115       H       25  46  82  94  97  98  98  98  98  98  98  98  98  98  98  98  98  98  98  98  
 LCS      30       L    67  115  115       H       25  45  82  94  97  98  98  98  98  98  98  98  98  98  98  98  98  98  98  98  
 LCS      31       G    67  115  115       C       22  45  82  94  97  98  98  98  98  98  98  98  98  98  98  98  98  98  98  98  
 LCS      32       K    67  115  115       C       26  47  82  94  97  98  98  98  98  98  98  98  98  98  98  98  98  98  98  98  
 LCS      33       P    67  115  115       C       18  44  80  94  97  98  98  98  98  98  98  98  98  98  98  98  98  98  98  98  
 LCS      34       A    67  115  115       H       20  45  82  94  97  98  98  98  98  98  98  98  98  98  98  98  98  98  98  98  
 LCS      35       D    67  115  115       H       22  45  82  94  97  98  98  98  98  98  98  98  98  98  98  98  98  98  98  98  
 LCS      36       R    67  115  115       H       25  45  82  94  97  98  98  98  98  98  98  98  98  98  98  98  98  98  98  98  
 LCS      37       V    67  115  115       C       25  47  82  94  97  98  98  98  98  98  98  98  98  98  98  98  98  98  98  98  
 LCS      38       N    67  115  115       E       27  47  82  94  97  98  98  98  98  98  98  98  98  98  98  98  98  98  98  98  
 LCS      39       V    67  115  115       E       27  47  82  94  97  98  98  98  98  98  98  98  98  98  98  98  98  98  98  98  
 LCS      40       T    67  115  115       E       27  47  82  94  97  98  98  98  98  98  98  98  98  98  98  98  98  98  98  98  
 LCS      41       V    67  115  115       E       27  47  82  94  97  98  98  98  98  98  98  98  98  98  98  98  98  98  98  98  
 LCS      42       R    67  115  115       E       26  47  82  94  97  98  98  98  98  98  98  98  98  98  98  98  98  98  98  98  
 LCS      43       P    67  115  115       C       27  47  82  94  97  98  98  98  98  98  98  98  98  98  98  98  98  98  98  98  
 LCS      44       G    67  115  115       C       27  47  82  94  97  98  98  98  98  98  98  98  98  98  98  98  98  98  98  98  
 LCS      45       L    67  115  115       C       27  47  82  94  97  98  98  98  98  98  98  98  98  98  98  98  98  98  98  98  
 LCS      46       A    67  115  115       C       23  47  82  94  97  98  98  98  98  98  98  98  98  98  98  98  98  98  98  98  
 LCS      47       M    67  115  115       C       27  47  82  94  97  98  98  98  98  98  98  98  98  98  98  98  98  98  98  98  
 LCS      48       A    67  115  115       C       17  47  82  94  97  98  98  98  98  98  98  98  98  98  98  98  98  98  98  98  
 LCS      49       L    67  115  115       E       12  36  82  94  97  98  98  98  98  98  98  98  98  98  98  98  98  98  98  98  
 LCS      50       S    67  115  115       C       10  26  59  94  97  98  98  98  98  98  98  98  98  98  98  98  98  98  98  98  
 LCS      51       G    67  115  115       C       11  26  59  94  97  98  98  98  98  98  98  98  98  98  98  98  98  98  98  98  
 LCS      52       S    67  115  115       E       12  47  82  94  97  98  98  98  98  98  98  98  98  98  98  98  98  98  98  98  
 LCS      53       T    67  115  115       C       17  47  82  94  97  98  98  98  98  98  98  98  98  98  98  98  98  98  98  98  
 LCS      54       E    67  115  115       C       25  47  82  94  97  98  98  98  98  98  98  98  98  98  98  98  98  98  98  98  
 LCS      55       P    67  115  115       C       27  47  82  94  97  98  98  98  98  98  98  98  98  98  98  98  98  98  98  98  
 LCS      56       C    67  115  115       C       23  46  82  94  97  98  98  98  98  98  98  98  98  98  98  98  98  98  98  98  
 LCS      57       A    67  115  115       E       21  42  82  94  97  98  98  98  98  98  98  98  98  98  98  98  98  98  98  98  
 LCS      58       Q    67  115  115       E       16  42  82  94  97  98  98  98  98  98  98  98  98  98  98  98  98  98  98  98  
 LCS      59       L    67  115  115       E       16  46  82  94  97  98  98  98  98  98  98  98  98  98  98  98  98  98  98  98  
 LCS      60       S    67  115  115       E       27  47  82  94  97  98  98  98  98  98  98  98  98  98  98  98  98  98  98  98  
 LCS      61       I    67  115  115       E       27  47  82  94  97  98  98  98  98  98  98  98  98  98  98  98  98  98  98  98  
 LCS      62       S    67  115  115       E       27  47  82  94  97  98  98  98  98  98  98  98  98  98  98  98  98  98  98  98  
 LCS      63       S    67  115  115       E       27  47  82  94  97  98  98  98  98  98  98  98  98  98  98  98  98  98  98  98  
 LCS      64       I    67  115  115       E       27  47  82  94  97  98  98  98  98  98  98  98  98  98  98  98  98  98  98  98  
 LCS      65       G    67  115  115       C       15  41  82  94  97  98  98  98  98  98  98  98  98  98  98  98  98  98  98  98  
 LCS      66       V    67  115  115       C        5  43  82  94  97  98  98  98  98  98  98  98  98  98  98  98  98  98  98  98  
 LCS      67       V    67  115  115       C       12  43  82  94  97  98  98  98  98  98  98  98  98  98  98  98  98  98  98  98  
 LCS      68       G    53  115  115       C        0  11  22  62  94  98  98  98  98  98  98  98  98  98  98  98  98  98  98  98  
 LCS      69       T    53  115  115       C        3  11  59  94  97  98  98  98  98  98  98  98  98  98  98  98  98  98  98  98  
 LCS      70       A    53  115  115       H        8  43  82  94  97  98  98  98  98  98  98  98  98  98  98  98  98  98  98  98  
 LCS      71       E    53  115  115       H       15  41  82  94  97  98  98  98  98  98  98  98  98  98  98  98  98  98  98  98  
 LCS      72       D    53  115  115       H       10  38  78  94  97  98  98  98  98  98  98  98  98  98  98  98  98  98  98  98  
 LCS      73       N    53  115  115       H       16  47  82  94  97  98  98  98  98  98  98  98  98  98  98  98  98  98  98  98  
 LCS      74       R    53  115  115       H       16  47  82  94  97  98  98  98  98  98  98  98  98  98  98  98  98  98  98  98  
 LCS      75       S    53  115  115       H       16  47  82  94  97  98  98  98  98  98  98  98  98  98  98  98  98  98  98  98  
 LCS      76       H    53  115  115       H       16  47  82  94  97  98  98  98  98  98  98  98  98  98  98  98  98  98  98  98  
 LCS      77       S    53  115  115       H       16  47  82  94  97  98  98  98  98  98  98  98  98  98  98  98  98  98  98  98  
 LCS      78       A    53  115  115       H       16  47  82  94  97  98  98  98  98  98  98  98  98  98  98  98  98  98  98  98  
 LCS      79       H    53  115  115       H       16  47  82  94  97  98  98  98  98  98  98  98  98  98  98  98  98  98  98  98  
 LCS      80       F    53  115  115       H       16  47  82  94  97  98  98  98  98  98  98  98  98  98  98  98  98  98  98  98  
 LCS      81       F    53  115  115       H       16  47  82  94  97  98  98  98  98  98  98  98  98  98  98  98  98  98  98  98  
 LCS      82       E    53  115  115       H       16  47  82  94  97  98  98  98  98  98  98  98  98  98  98  98  98  98  98  98  
 LCS      83       F    53  115  115       H       16  47  82  94  97  98  98  98  98  98  98  98  98  98  98  98  98  98  98  98  
 LCS      84       L    53  115  115       H       15  47  82  94  97  98  98  98  98  98  98  98  98  98  98  98  98  98  98  98  
 LCS      85       T    53  115  115       H       11  47  82  94  97  98  98  98  98  98  98  98  98  98  98  98  98  98  98  98  
 LCS      86       K    53  115  115       H       11  47  82  94  97  98  98  98  98  98  98  98  98  98  98  98  98  98  98  98  
 LCS      87       E    53  115  115       H        8  47  82  94  97  98  98  98  98  98  98  98  98  98  98  98  98  98  98  98  
 LCS      88       L    53  115  115       H       11  47  82  94  97  98  98  98  98  98  98  98  98  98  98  98  98  98  98  98  
 LCS      89       A    53  115  115       C       10  46  82  94  97  98  98  98  98  98  98  98  98  98  98  98  98  98  98  98  
 LCS      90       L    53  115  115       C        7  41  82  94  97  98  98  98  98  98  98  98  98  98  98  98  98  98  98  98  
 LCS      91       G    53  115  115       C        7  41  82  94  97  98  98  98  98  98  98  98  98  98  98  98  98  98  98  98  
 LCS      92       Q    53  115  115       H        6  35  82  94  97  98  98  98  98  98  98  98  98  98  98  98  98  98  98  98  
 LCS      93       D    53  115  115       H       26  45  82  94  97  98  98  98  98  98  98  98  98  98  98  98  98  98  98  98  
 LCS      94       R    53  115  115       H       23  37  73  94  97  98  98  98  98  98  98  98  98  98  98  98  98  98  98  98  
 LCS      95       I    53  115  115       E       23  41  82  94  97  98  98  98  98  98  98  98  98  98  98  98  98  98  98  98  
 LCS      96       L    53  115  115       E       23  41  82  94  97  98  98  98  98  98  98  98  98  98  98  98  98  98  98  98  
 LCS      97       I    53  115  115       E       27  47  82  94  97  98  98  98  98  98  98  98  98  98  98  98  98  98  98  98  
 LCS      98       R    53  115  115       E       27  46  82  94  97  98  98  98  98  98  98  98  98  98  98  98  98  98  98  98  
 LCS      99       F    53  115  115       E       27  47  82  94  97  98  98  98  98  98  98  98  98  98  98  98  98  98  98  98  
 LCS     100       F    53  115  115       E       26  47  82  94  97  98  98  98  98  98  98  98  98  98  98  98  98  98  98  98  
 LCS     101       P    53  115  115       E       16  47  82  94  97  98  98  98  98  98  98  98  98  98  98  98  98  98  98  98  
 LCS     102       L    53  115  115       E       23  47  82  94  97  98  98  98  98  98  98  98  98  98  98  98  98  98  98  98  
 LCS     103       E    53  115  115       C       17  47  82  94  97  98  98  98  98  98  98  98  98  98  98  98  98  98  98  98  
 LCS     104       S    53  115  115       H        9  47  82  94  97  98  98  98  98  98  98  98  98  98  98  98  98  98  98  98  
 LCS     105       W    53  115  115       H       17  47  82  94  97  98  98  98  98  98  98  98  98  98  98  98  98  98  98  98  
 LCS     106       Q    53  115  115       H       13  47  82  94  97  98  98  98  98  98  98  98  98  98  98  98  98  98  98  98  
 LCS     107       I    53  115  115       C       13  47  82  94  97  98  98  98  98  98  98  98  98  98  98  98  98  98  98  98  
 LCS     108       G    53  115  115       E       12  47  82  94  97  98  98  98  98  98  98  98  98  98  98  98  98  98  98  98  
 LCS     109       K    46  115  115       E        9  47  82  94  97  98  98  98  98  98  98  98  98  98  98  98  98  98  98  98  
 LCS     110       I    46  115  115       C        9  47  82  94  97  98  98  98  98  98  98  98  98  98  98  98  98  98  98  98  
 LCS     111       G    46  115  115       C        9  47  82  94  97  98  98  98  98  98  98  98  98  98  98  98  98  98  98  98  
 LCS     112       T    46  115  115       E        9  47  82  94  97  98  98  98  98  98  98  98  98  98  98  98  98  98  98  98  
 LCS     113       V    46  115  115       E       12  47  82  94  97  98  98  98  98  98  98  98  98  98  98  98  98  98  98  98  
 LCS     114       M    46  115  115       H        9  47  82  94  97  98  98  98  98  98  98  98  98  98  98  98  98  98  98  98  
 LCS     115       T    46  115  115       H        9  23  66  94  97  98  98  98  98  98  98  98  98  98  98  98  98  98  98  98  
 LCS TOTAL_SCORE (RMS CUTOFF   1.00):  51.02 
 
 NUMBER_OF_CA_Tg:  117      NUMBER_OF_CA_Pr:  115      PERCENT_OF_CA:  98.29  
 
GLOBAL_DISTANCE_TEST (the largest set of residues under DISTANCE_CUTOFF (using LCS results)): 
 GDT DISTANCE_CUTOFF     0.50    1.00    1.50    2.00    2.50    3.00    3.50    4.00    4.50    5.00    5.50    6.00    6.50    7.00    7.50    8.00    8.50    9.00    9.50   10.00  
 GDT NUMBER_OF_CA_max      32      56      97     111     114     115     115     115     115     115     115     115     115     115     115     115     115     115     115     115  
 GDT PERCENT_OF_CA_Pr   27.83   48.70   84.35   96.52   99.13  100.00  100.00  100.00  100.00  100.00  100.00  100.00  100.00  100.00  100.00  100.00  100.00  100.00  100.00  100.00 
 GDT PERCENT_OF_CA_Tg   27.35   47.86   82.91   94.87   97.44   98.29   98.29   98.29   98.29   98.29   98.29   98.29   98.29   98.29   98.29   98.29   98.29   98.29   98.29   98.29 
 GDT FRAGMENT: Beg-End   1-99    1-114   1-114   1-115   1-115   1-115   1-115   1-115   1-115   1-115   1-115   1-115   1-115   1-115   1-115   1-115   1-115   1-115   1-115   1-115 
 GDT RMS_LOCAL           0.33    0.70    1.01    1.14    1.18    1.21    1.21    1.21    1.21    1.21    1.21    1.21    1.21    1.21    1.21    1.21    1.21    1.21    1.21    1.21 
 GDT RMS_ALL_CA          1.48    1.25    1.22    1.22    1.21    1.21    1.21    1.21    1.21    1.21    1.21    1.21    1.21    1.21    1.21    1.21    1.21    1.21    1.21    1.21 
 
 
 TEST (CA)  RMS =   1.21               (Number of atoms:  115) 
 
 (CA)  RMS:                   CRMSCA         NP     PP     TN 
     ALL . . . . . . . . . .    1.21        115    98.3   117     CRMSCA  
     CRN = ALL/NP  . . . . .    0.0105                            CRMSCA  
     SECONDARY STRUCTURE . .    1.06         59   100.0    59     CRMSCA  
     SURFACE . . . . . . . .    1.29         71    97.3    73     CRMSCA  
     BURIED  . . . . . . . .    1.08         44   100.0    44     CRMSCA  
 (MC)  RMS:                   CRMSMC         NP     PP     TN 
     ALL . . . . . . . . . .    1.24        483    83.9   576     CRMSMC  
     SECONDARY STRUCTURE . .    1.07        249    84.4   295     CRMSMC  
     SURFACE . . . . . . . .    1.31        289    81.2   356     CRMSMC  
     BURIED  . . . . . . . .    1.12        194    88.2   220     CRMSMC  
 (SC)  RMS:                   CRMSSC         NP     PP     TN 
     ALL . . . . . . . . . .    1.38        105    25.2   416     CRMSSC  
     RELIABLE SIDE CHAINS  .    1.33         89    25.4   350     CRMSSC  
     SECONDARY STRUCTURE . .    1.32         50    21.1   237     CRMSSC  
     SURFACE . . . . . . . .    1.48         45    18.2   247     CRMSSC  
     BURIED  . . . . . . . .    1.29         60    35.5   169     CRMSSC  
 (ALL) RMS:                   CRMSALL        NP     PP     TN 
     ALL . . . . . . . . . .    1.27        556    62.9   884     CRMSALL 
     SECONDARY STRUCTURE . .    1.13        283    59.8   473     CRMSALL 
     SURFACE . . . . . . . .    1.33        320    59.4   539     CRMSALL 
     BURIED  . . . . . . . .    1.17        236    68.4   345     CRMSALL 
 
Accuracy of estimates of atomic coordinate errors: model <-> target 
 
 (CA)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    1.239      0.381       0.439    115    98.3   117     ERRCA  
     SECONDARY STRUCTURE . .    1.409      0.443       0.514     59   100.0    59     ERRCA  
     SURFACE . . . . . . . .    1.274      0.368       0.425     71    97.3    73     ERRCA  
     BURIED  . . . . . . . .    1.183      0.403       0.462     44   100.0    44     ERRCA  
 (MC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    1.196      0.373       0.427    483    83.9   576     ERRMC  
     SECONDARY STRUCTURE . .    1.355      0.431       0.495    249    84.4   295     ERRMC  
     SURFACE . . . . . . . .    1.225      0.360       0.414    289    81.2   356     ERRMC  
     BURIED  . . . . . . . .    1.153      0.393       0.448    194    88.2   220     ERRMC  
 (SC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    0.759      0.279       0.300    105    25.2   416     ERRSC  
     RELIABLE SIDE CHAINS  .    0.751      0.277       0.302     89    25.4   350     ERRSC  
     SECONDARY STRUCTURE . .    0.892      0.326       0.370     50    21.1   237     ERRSC  
     SURFACE . . . . . . . .    0.646      0.224       0.245     45    18.2   247     ERRSC  
     BURIED  . . . . . . . .    0.844      0.320       0.342     60    35.5   169     ERRSC  
 (ALL) ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    1.134      0.358       0.406    556    62.9   884     ERRALL 
     SECONDARY STRUCTURE . .    1.294      0.415       0.475    283    59.8   473     ERRALL 
     SURFACE . . . . . . . .    1.166      0.345       0.395    320    59.4   539     ERRALL 
     BURIED  . . . . . . . .    1.089      0.376       0.422    236    68.4   345     ERRALL 
 
 
 
DISTANCES: Percent of total atoms where distance (target <-> model) in global 
           superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms 
            D < 1     D < 2     D < 3     D < 5    D < 10      NP      TN 
CA  (N)        51       110       114       115       115     115     117   DISTCA 
CA  (P)     43.59     94.02     97.44     98.29     98.29             117   DISTCA 
CA  (RMS)    0.70      1.13      1.18      1.21      1.21                   DISTCA 
 
ALL (N)       239       525       548       556       556     556     884   DISTALL 
ALL (P)     27.04     59.39     61.99     62.90     62.90             884   DISTALL 
ALL (RMS)    0.70      1.13      1.20      1.27      1.27                   DISTALL 
 
 
 
 
END of the results output 
