 
####################################################### 
#                                                     # 
#                        ACE                          # 
#                                                     # 
#        Ab-initio protein structure prediction       # 
#                         &                           # 
#               Comparative modeling                  # 
#                                                     # 
#                     Evaluator                       # 
#                                                     # 
#                ----------------- 11/1998            # 
#                                                     # 
#                         by                          # 
#           Adam Zemla & Ceslovas Venclovas           # 
#                                                     # 
#         Protein Structure Prediction Center         # 
#      Lawrence Livermore National Laboratory, CA     # 
#                                                     # 
####################################################### 
########################## 
#                        # 
#    ACE parameters:     # 
#                        # 
########################## 
# 
# MEASURES: 
# 
# For AB: 0 3 9 13 14 
# For CM: 0 1 2 3 6 7 8 9 10 11 12 13 14 18 
# 
ARMSMC  0 1 2     7 8 9    11 12 13 14 18 
ARMSSC  0 1 2 3 6 7 8 9    11 12 13 14 18 
# 
CRMSCA  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSMC  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSSC  0 1 2 3 6     9    11 12 13 14 18 
CRMSALL 0 1 2     7 8 9    11 12 13 14 18 
# 
D-E_CA  0 1 2     7 8 9    11 12 13 14 18 
D-E_MC  0 1 2     7 8 9    11 12 13 14 18 
D-E_SC  0 1 2 3 6 7 8 9    11 12 13 14 18 
D-E_ALL 0 1 2     7 8 9    11 12 13 14 18 
# 
# Output parameters 
# 
DIHED-OUTPUT        0         #    1 - ON, 0 - OFF 
RES-CONTACTS        0         #    1 - ON, 0 - OFF 
SS-OUTPUT           1         #    1 - ON, 0 - OFF 
PHI-PSI             0         #    1 - SEPARATELY, 0 - NO  
# 
# Calculation parameters 
# 
SOV-METHOD          1         #    0 - SOV 94,  1 - SOV 
# 
TEMP-FACTOR         30.0      #    Target structure temperature factor cutoff 
ACCESS-CUTOFF       0.20      #    Solvent accessibility cutoff   
ANGLES-CORRECT      30.0      #    target-model  (diff < 30.0)    
DSSP-HELIX          6         #    Secondary Structure subset: helix cutoff  
DSSP-STRAND         3         #    Secondary Structure subset: strand cutoff 
ROTAMERS-LIMIT      30.0      #    target-parent (diff > 30.0) 
ROTATION-MATRIX     0         #    1 - ON, 0 - OFF   
SC-SWAPPING         1         #    1 - ON, 0 - OFF    
SEP-CONTACTS        1         #    Separation interval along the chain 
RESIDUE-CONTACTS    8.0       #    Contact definition between two C-beta atoms 
# 
CRMS-METHOD         1         #    0 - ALL, 1 - CA, 2 - MC+CB, 3 - CA (iter)  
ITER-CUTOFF         2.5       #    DISTANCE cutoff (for CA (iter))  
LCS_GDT             1         #    LCS and GDT calculations (1 - ON, 0 - OFF) 
########################## 
#                        # 
#      ACE results:      # 
#                        # 
########################## 
 
 
 
#          The number of residues in SS section: 123 , MODEL 123 , TARGET 123 
#          The number of residues possible to evaluate: 123 
 
 
 SECONDARY STRUCTURE PREDICTION: 
       NUM    RES   SS   Prediction   Probability 
 SSP     2     D     C     C             1.00 
 SSP     3     Y     E     C             1.00 
 SSP     4     E     E     C             1.00 
 SSP     5     I     E     E             1.00 
 SSP     6     L     E     E             1.00 
 SSP     7     F     E     E             1.00 
 SSP     8     S     E     C             1.00 
 SSP     9     D     E     C             1.00 
 SSP    10     E     E     C             1.00 
 SSP    11     T     E     C             1.00 
 SSP    12     M     E     E             1.00 
 SSP    13     N     C     C             1.00 
 SSP    14     Y     H     H             1.00 
 SSP    15     A     H     H             1.00 
 SSP    16     D     H     H             1.00 
 SSP    17     A     H     H             1.00 
 SSP    18     G     H     H             1.00 
 SSP    19     T     H     H             1.00 
 SSP    20     Y     H     H             1.00 
 SSP    21     C     H     H             1.00 
 SSP    22     Q     H     H             1.00 
 SSP    23     S     C     H             1.00 
 SSP    24     R     C     H             1.00 
 SSP    25     G     C     C             1.00 
 SSP    26     M     C     C             1.00 
 SSP    27     A     E     E             1.00 
 SSP    28     L     E     E             1.00 
 SSP    29     V     C     C             1.00 
 SSP    30     S     C     C             1.00 
 SSP    31     S     H     C             1.00 
 SSP    32     A     H     C             1.00 
 SSP    33     M     H     C             1.00 
 SSP    34     R     H     C             1.00 
 SSP    35     D     C     C             1.00 
 SSP    36     S     H     H             1.00 
 SSP    37     T     H     H             1.00 
 SSP    38     M     H     H             1.00 
 SSP    39     V     H     H             1.00 
 SSP    40     K     H     H             1.00 
 SSP    41     A     H     H             1.00 
 SSP    42     I     H     H             1.00 
 SSP    43     L     H     H             1.00 
 SSP    44     A     H     H             1.00 
 SSP    45     F     H     H             1.00 
 SSP    46     T     H     C             1.00 
 SSP    47     E     H     C             1.00 
 SSP    48     V     H     C             1.00 
 SSP    49     K     H     C             1.00 
 SSP    50     G     C     C             1.00 
 SSP    51     H     C     C             1.00 
 SSP    52     D     C     C             1.00 
 SSP    53     Y     E     E             1.00 
 SSP    54     W     E     E             1.00 
 SSP    55     V     E     C             1.00 
 SSP    56     G     E     C             1.00 
 SSP    57     A     E     E             1.00 
 SSP    58     D     E     E             1.00 
 SSP    59     N     C     C             1.00 
 SSP    60     L     C     C             1.00 
 SSP    61     Q     C     C             1.00 
 SSP    62     D     C     C             1.00 
 SSP    63     G     C     C             1.00 
 SSP    64     A     C     C             1.00 
 SSP    65     Y     C     C             1.00 
 SSP    66     N     C     C             1.00 
 SSP    67     F     C     C             1.00 
 SSP    68     L     E     E             1.00 
 SSP    69     W     E     E             1.00 
 SSP    70     N     C     C             1.00 
 SSP    71     D     C     C             1.00 
 SSP    72     G     C     C             1.00 
 SSP    73     V     C     C             1.00 
 SSP    74     S     E     E             1.00 
 SSP    75     L     C     C             1.00 
 SSP    76     P     C     C             1.00 
 SSP    77     T     C     C             1.00 
 SSP    78     D     C     C             1.00 
 SSP    79     S     C     C             1.00 
 SSP    80     D     C     C             1.00 
 SSP    81     L     C     C             1.00 
 SSP    82     W     E     C             1.00 
 SSP    83     S     C     C             1.00 
 SSP    84     P     C     C             1.00 
 SSP    85     N     C     C             1.00 
 SSP    86     E     C     C             1.00 
 SSP    87     P     C     C             1.00 
 SSP    88     S     C     C             1.00 
 SSP    89     N     C     C             1.00 
 SSP    90     P     C     C             1.00 
 SSP    91     Q     C     C             1.00 
 SSP    92     S     C     C             1.00 
 SSP    93     W     C     C             1.00 
 SSP    94     Q     C     C             1.00 
 SSP    95     L     C     C             1.00 
 SSP    96     C     E     E             1.00 
 SSP    97     V     E     E             1.00 
 SSP    98     Q     E     E             1.00 
 SSP    99     I     E     E             1.00 
 SSP   100     W     E     C             1.00 
 SSP   101     S     C     C             1.00 
 SSP   102     K     C     C             1.00 
 SSP   103     Y     C     C             1.00 
 SSP   104     N     C     C             1.00 
 SSP   105     L     E     C             1.00 
 SSP   106     L     E     E             1.00 
 SSP   107     D     E     E             1.00 
 SSP   108     D     E     E             1.00 
 SSP   109     V     E     E             1.00 
 SSP   110     G     C     C             1.00 
 SSP   111     C     C     C             1.00 
 SSP   112     G     C     C             1.00 
 SSP   113     G     C     C             1.00 
 SSP   114     A     C     C             1.00 
 SSP   115     R     E     E             1.00 
 SSP   116     R     E     E             1.00 
 SSP   117     V     E     E             1.00 
 SSP   118     I     E     E             1.00 
 SSP   119     C     E     E             1.00 
 SSP   120     E     E     E             1.00 
 SSP   121     K     E     C             1.00 
 SSP   122     E     E     C             1.00 
 SSP   123     L     C     C             1.00 
 SSP   124     D     C     C             1.00 
 
 NP      - Number of predicted residues 
 PP      - Percent of predicted residues 
 Q3      - Residues predicted correctly (H, E, C) 
 Qhelix  - Residues predicted correctly (HELIX) 
 Qstrand - Residues predicted correctly (STRAND) 
 Qcoil   - Residues predicted correctly (COIL) 
 SOV     - Segment overlap quantity 
 
                     Q3      Qhelix   Qstrand   Qcoil      PP 
 Qindex              81.3      70.4     67.5     96.4    100.0 
 
                     ALL      HELIX    STRAND    COIL      PP 
 SOV observed        73.8      85.2     60.7     81.5    100.0 
 
           Considered    Percent predicted   Percent predicted 
            segments        correctly         as wrong type 
 SEG           10              90.0               0.0 
 
         Number of wrong    Number of wrong 
             breaks             joins 
 B/J            1                 0 
 
  CONFIDENCE (P)     Average     NP    PP/BIN     Q3 
 BIN  0.90 - 1.00      1.00     123    100.0     81.3 
 
 BIN  0.00 - 1.00      1.00     123    100.0     81.3 
 
 
 
 
              predicted        number of target      total number   total number 
                as a         contacts possible in         of             of 
               contact         predicted subset:       contacts       contacts 
            percent  number    percent    number       in target    in prediction 
 CONTACTS:     0.0      0         0.0        0             0              0 
 
 
 
 CONSIDERED - explicitly provided contacts (with positive confidence) or 
              non contacts (with negative confidence) possible to evaluate 
 SEP      - Minimum separation between residues considered 
 NPC      - Number of contacts predicted correctly 
 PC(P)    - Percent of contacts predicted correctly from CONSIDERED in PREDICTION 
 PC(T)    - Percent of contacts predicted correctly from CONSIDERED in TARGET with SEP limit 
 PC(TT)   - Percent of contacts predicted correctly from TOTAL in TARGET with SEP limit 
 
                        CONSIDERED     CONSIDERED       TOTAL          TOTAL 
                      in PREDICTION    in TARGET    in PREDICTION    in TARGET 
 ALL RESIDUES USED         123             123           125            123 
 ALL CONTACTS (< 8.0A)     591             606           596            606 
 
               in PREDICTION      Predicted correctly          Submitted as        in TARGET 
                CONSIDERED     NPC   PC(P)   PC(T)   PC(TT)    NOT  predicted   CONSIDERED  TOTAL  |   SEP 
 RES CONTACTS       591        495   83.76   81.68   81.68       0     0.00         606       606  |   1-9999 
 RES CONTACTS       296        275   92.91   90.76   90.76       0     0.00         303       303  |   1-4    
 RES CONTACTS        41         33   80.49   78.57   78.57       0     0.00          42        42  |   5-8    
 RES CONTACTS       254        187   73.62   71.65   71.65       0     0.00         261       261  |   9-9999 
 
 
 
# WARNING! TARGET 966 atoms, MODEL 983 atoms, 966 common with TARGET 
           Number of atoms possible to evaluate: 966 
 
MEASURES: 
 
 
ANGLES RMS : model <-> target 
 
 (MC: PHI+PSI) DIHED RMS:      ARMSMC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    54.74           69.3   244   100.0   244     ARMSMC  
     SECONDARY STRUCTURE . .    37.93           83.3   114   100.0   114     ARMSMC  
     SURFACE . . . . . . . .    65.35           60.9   138   100.0   138     ARMSMC  
     BURIED  . . . . . . . .    36.57           80.2   106   100.0   106     ARMSMC  
 (SC: CHI1) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    83.57           49.5   105   100.0   105     ARMSSC1 
     RELIABLE SIDE CHAINS  .    82.52           50.5    97   100.0    97     ARMSSC1 
     SECONDARY STRUCTURE . .    84.14           52.0    50   100.0    50     ARMSSC1 
     SURFACE . . . . . . . .    84.92           47.4    57   100.0    57     ARMSSC1 
     BURIED  . . . . . . . .    81.93           52.1    48   100.0    48     ARMSSC1 
 (SC: CHI2) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    65.31           54.5    77   100.0    77     ARMSSC2 
     RELIABLE SIDE CHAINS  .    60.34           58.6    58   100.0    58     ARMSSC2 
     SECONDARY STRUCTURE . .    64.15           60.0    35   100.0    35     ARMSSC2 
     SURFACE . . . . . . . .    61.34           58.1    43   100.0    43     ARMSSC2 
     BURIED  . . . . . . . .    70.01           50.0    34   100.0    34     ARMSSC2 
 (SC: CHI3) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    88.92           39.1    23   100.0    23     ARMSSC3 
     RELIABLE SIDE CHAINS  .    87.17           38.9    18   100.0    18     ARMSSC3 
     SECONDARY STRUCTURE . .    78.98           35.7    14   100.0    14     ARMSSC3 
     SURFACE . . . . . . . .    86.70           35.7    14   100.0    14     ARMSSC3 
     BURIED  . . . . . . . .    92.27           44.4     9   100.0     9     ARMSSC3 
 (SC: CHI4) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .   105.15           25.0     8   100.0     8     ARMSSC4 
     RELIABLE SIDE CHAINS  .   105.15           25.0     8   100.0     8     ARMSSC4 
     SECONDARY STRUCTURE . .    87.15           40.0     5   100.0     5     ARMSSC4 
     SURFACE . . . . . . . .   102.69           33.3     6   100.0     6     ARMSSC4 
     BURIED  . . . . . . . .   112.22            0.0     2   100.0     2     ARMSSC4 
 
COORDINATES RMS : model <-> target 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   5.00): 
 FRAGMENT  1    2 - 124  123  Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT   123      2 - 124      2.75     2.75 
  LCS LOCAL_SCORE:            100.00 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   2.00): 
 FRAGMENT  1    2 - 124  123  Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    58      2 - 59       1.96     2.99 
  LCS LOCAL_SCORE:             34.10 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   1.00): 
 FRAGMENT  1    2 - 124  123  Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    25     10 - 34       0.97     2.91 
  LCS LOCAL_SCORE:             12.14 
 
 
 LCS                   LENGTH_OF_THE 
 LCS  RESIDUE  RESIDUE    CONTINUOUS  SECONDARY 
 LCS   NUMBER     NAME       SEGMENT  STRUCTURE   GDT_DATA_COLUMNS (PERCENT OF THE TARGET) 
 LCS       2       D    23   58  123       C       13  35  61  70  73  78  82  86  89  91  94  97  98 100 100 100 100 100 100 100  
 LCS       3       Y    23   58  123       E       16  45  61  70  73  78  82  86  89  91  94  97  98 100 100 100 100 100 100 100  
 LCS       4       E    23   58  123       E       14  45  61  70  73  78  82  86  89  91  94  97  98 100 100 100 100 100 100 100  
 LCS       5       I    23   58  123       E       21  45  61  70  73  78  82  86  89  91  94  97  98 100 100 100 100 100 100 100  
 LCS       6       L    23   58  123       E       22  45  61  70  73  78  82  86  89  91  94  97  98 100 100 100 100 100 100 100  
 LCS       7       F    23   58  123       E        6  29  59  70  73  78  82  86  89  91  94  97  98 100 100 100 100 100 100 100  
 LCS       8       S    23   58  123       E        6  21  56  70  73  78  82  86  89  91  94  97  98 100 100 100 100 100 100 100  
 LCS       9       D    23   58  123       E        5  14  47  69  73  78  82  86  89  91  94  97  98 100 100 100 100 100 100 100  
 LCS      10       E    25   58  123       E       13  45  61  70  73  78  82  86  89  91  94  97  98 100 100 100 100 100 100 100  
 LCS      11       T    25   58  123       E       22  45  61  70  73  78  82  86  89  91  94  97  98 100 100 100 100 100 100 100  
 LCS      12       M    25   58  123       E       22  45  61  70  73  78  82  86  89  91  94  97  98 100 100 100 100 100 100 100  
 LCS      13       N    25   58  123       C       22  45  61  70  73  78  82  86  89  91  94  97  98 100 100 100 100 100 100 100  
 LCS      14       Y    25   58  123       H       22  45  61  70  73  78  82  86  89  91  94  97  98 100 100 100 100 100 100 100  
 LCS      15       A    25   58  123       H       22  45  61  70  73  78  82  86  89  91  94  97  98 100 100 100 100 100 100 100  
 LCS      16       D    25   58  123       H       22  45  61  70  73  78  82  86  89  91  94  97  98 100 100 100 100 100 100 100  
 LCS      17       A    25   58  123       H       22  45  61  70  73  78  82  86  89  91  94  97  98 100 100 100 100 100 100 100  
 LCS      18       G    25   58  123       H       22  45  61  70  73  78  82  86  89  91  94  97  98 100 100 100 100 100 100 100  
 LCS      19       T    25   58  123       H       22  45  61  70  73  78  82  86  89  91  94  97  98 100 100 100 100 100 100 100  
 LCS      20       Y    25   58  123       H       22  45  61  70  73  78  82  86  89  91  94  97  98 100 100 100 100 100 100 100  
 LCS      21       C    25   58  123       H       22  45  61  70  73  78  82  86  89  91  94  97  98 100 100 100 100 100 100 100  
 LCS      22       Q    25   58  123       H       20  45  61  70  73  78  82  86  89  91  94  97  98 100 100 100 100 100 100 100  
 LCS      23       S    25   58  123       C       17  44  61  70  73  78  82  86  89  91  94  97  98 100 100 100 100 100 100 100  
 LCS      24       R    25   58  123       C       22  45  61  70  73  78  82  86  89  91  94  97  98 100 100 100 100 100 100 100  
 LCS      25       G    25   58  123       C        2   3   3  52  68  76  82  86  89  91  94  97  98 100 100 100 100 100 100 100  
 LCS      26       M    25   58  123       C        4  36  57  70  73  78  82  86  89  91  94  97  98 100 100 100 100 100 100 100  
 LCS      27       A    25   58  123       E       20  45  61  70  73  78  82  86  89  91  94  97  98 100 100 100 100 100 100 100  
 LCS      28       L    25   58  123       E       22  45  61  70  73  78  82  86  89  91  94  97  98 100 100 100 100 100 100 100  
 LCS      29       V    25   58  123       C       22  45  61  70  73  78  82  86  89  91  94  97  98 100 100 100 100 100 100 100  
 LCS      30       S    25   58  123       C       21  45  61  70  73  78  82  86  89  91  94  97  98 100 100 100 100 100 100 100  
 LCS      31       S    25   58  123       H       13  43  61  70  73  78  82  86  89  91  94  97  98 100 100 100 100 100 100 100  
 LCS      32       A    25   58  123       H       20  44  61  70  73  78  82  86  89  91  94  97  98 100 100 100 100 100 100 100  
 LCS      33       M    25   58  123       H       10  44  61  70  73  78  82  86  89  91  94  97  98 100 100 100 100 100 100 100  
 LCS      34       R    25   58  123       H        9  45  61  70  73  78  82  86  89  91  94  97  98 100 100 100 100 100 100 100  
 LCS      35       D    12   58  123       C        3   7  17  54  69  78  81  86  89  91  94  97  98 100 100 100 100 100 100 100  
 LCS      36       S    12   58  123       H        7  13  31  57  69  78  81  86  89  91  94  97  98 100 100 100 100 100 100 100  
 LCS      37       T    12   58  123       H        7  17  48  60  69  78  81  86  89  91  94  97  98 100 100 100 100 100 100 100  
 LCS      38       M    12   58  123       H        7  24  49  63  72  78  81  86  89  91  94  97  98 100 100 100 100 100 100 100  
 LCS      39       V    12   58  123       H        7  17  51  67  73  78  82  86  89  91  94  97  98 100 100 100 100 100 100 100  
 LCS      40       K    12   58  123       H        7  42  61  70  73  78  82  86  89  91  94  97  98 100 100 100 100 100 100 100  
 LCS      41       A    12   58  123       H        9  44  61  70  73  78  82  86  89  91  94  97  98 100 100 100 100 100 100 100  
 LCS      42       I    12   58  123       H       12  45  61  70  73  78  82  86  89  91  94  97  98 100 100 100 100 100 100 100  
 LCS      43       L    12   58  123       H        7  35  61  70  73  78  82  86  89  91  94  97  98 100 100 100 100 100 100 100  
 LCS      44       A    12   58  123       H        7  37  61  70  73  78  82  86  89  91  94  97  98 100 100 100 100 100 100 100  
 LCS      45       F    12   58  123       H        7  13  42  61  73  77  82  86  89  91  94  97  98 100 100 100 100 100 100 100  
 LCS      46       T    12   58  123       H        3   8  28  52  72  77  82  86  89  91  94  97  98 100 100 100 100 100 100 100  
 LCS      47       E     3   58  123       H        2   2   6   7  22  47  60  82  88  91  94  97  98 100 100 100 100 100 100 100  
 LCS      48       V     4   58  123       H        2   5  19  45  73  78  82  86  89  91  94  97  98 100 100 100 100 100 100 100  
 LCS      49       K     4   58  123       H        2   9  30  50  72  78  82  86  89  91  94  97  98 100 100 100 100 100 100 100  
 LCS      50       G     4   58  123       C        2   5  18  44  62  75  80  86  89  91  94  97  98 100 100 100 100 100 100 100  
 LCS      51       H     4   58  123       C        3   9  30  45  70  78  82  86  89  91  94  97  98 100 100 100 100 100 100 100  
 LCS      52       D     8   58  123       C        8  43  61  70  73  78  82  86  89  91  94  97  98 100 100 100 100 100 100 100  
 LCS      53       Y     8   58  123       E       22  45  61  70  73  78  82  86  89  91  94  97  98 100 100 100 100 100 100 100  
 LCS      54       W     8   58  123       E       22  45  61  70  73  78  82  86  89  91  94  97  98 100 100 100 100 100 100 100  
 LCS      55       V     8   58  123       E       22  45  61  70  73  78  82  86  89  91  94  97  98 100 100 100 100 100 100 100  
 LCS      56       G     8   58  123       E       22  45  61  70  73  78  82  86  89  91  94  97  98 100 100 100 100 100 100 100  
 LCS      57       A     8   58  123       E       19  45  61  70  73  78  82  86  89  91  94  97  98 100 100 100 100 100 100 100  
 LCS      58       D     8   58  123       E       10  45  61  70  73  78  82  86  89  91  94  97  98 100 100 100 100 100 100 100  
 LCS      59       N     8   58  123       C        8  27  60  70  73  78  82  86  89  91  94  97  98 100 100 100 100 100 100 100  
 LCS      60       L     8   28  123       C        3   4  21  51  73  78  82  86  89  91  94  97  98 100 100 100 100 100 100 100  
 LCS      61       Q     4   28  123       C        2   4  13  26  47  67  80  86  89  91  94  97  98 100 100 100 100 100 100 100  
 LCS      62       D     4   28  123       C        2   7  14  43  54  72  78  86  89  91  94  97  98 100 100 100 100 100 100 100  
 LCS      63       G     5   28  123       C        3   3   4  13  25  43  75  86  89  91  94  97  98 100 100 100 100 100 100 100  
 LCS      64       A     5   28  123       C        3   4   9  18  28  45  75  85  89  91  94  97  98 100 100 100 100 100 100 100  
 LCS      65       Y    12   28  123       C        4  13  30  50  72  78  82  86  89  91  94  97  98 100 100 100 100 100 100 100  
 LCS      66       N    12   28  123       C        6  26  58  70  73  78  82  86  89  91  94  97  98 100 100 100 100 100 100 100  
 LCS      67       F    12   28  123       C       10  36  61  70  73  78  82  86  89  91  94  97  98 100 100 100 100 100 100 100  
 LCS      68       L    12   28  123       E       10  45  61  70  73  78  82  86  89  91  94  97  98 100 100 100 100 100 100 100  
 LCS      69       W    12   28  123       E       10  45  61  70  73  78  82  86  89  91  94  97  98 100 100 100 100 100 100 100  
 LCS      70       N    12   28  123       C       19  45  61  70  73  78  82  86  89  91  94  97  98 100 100 100 100 100 100 100  
 LCS      71       D    12   28  123       C       13  45  61  70  73  78  82  86  89  91  94  97  98 100 100 100 100 100 100 100  
 LCS      72       G    12   28  123       C        9  33  61  70  73  78  82  86  89  91  94  97  98 100 100 100 100 100 100 100  
 LCS      73       V    12   28  123       C       10  36  61  70  73  78  82  86  89  91  94  97  98 100 100 100 100 100 100 100  
 LCS      74       S    12   28  123       E       10  30  61  70  73  78  82  86  89  91  94  97  98 100 100 100 100 100 100 100  
 LCS      75       L    12   28  123       C        8  28  53  70  73  78  82  86  89  91  94  97  98 100 100 100 100 100 100 100  
 LCS      76       P    12   28  123       C        4   9  20  36  54  74  82  86  89  91  94  97  98 100 100 100 100 100 100 100  
 LCS      77       T     6   28  123       C        4   4   8  21  34  43  56  76  86  91  94  97  98 100 100 100 100 100 100 100  
 LCS      78       D     6   28  123       C        4   4   5   6  32  40  55  61  77  86  92  95  97 100 100 100 100 100 100 100  
 LCS      79       S     6   28  123       C        4   4  13  24  54  59  73  84  88  91  94  97  98 100 100 100 100 100 100 100  
 LCS      80       D     3   14  123       C        2   2   3   6   9  42  77  82  86  91  94  97  98 100 100 100 100 100 100 100  
 LCS      81       L    10   20  123       C        8  41  61  70  73  78  82  86  89  91  94  97  98 100 100 100 100 100 100 100  
 LCS      82       W    10   20  123       E       22  45  61  70  73  78  82  86  89  91  94  97  98 100 100 100 100 100 100 100  
 LCS      83       S    10   20  123       C       17  44  61  70  73  78  82  86  89  91  94  97  98 100 100 100 100 100 100 100  
 LCS      84       P    10   20  123       C       10  44  61  70  73  78  82  86  89  91  94  97  98 100 100 100 100 100 100 100  
 LCS      85       N    10   20  123       C       17  44  61  70  73  78  82  86  89  91  94  97  98 100 100 100 100 100 100 100  
 LCS      86       E    10   20  123       C       22  45  61  70  73  78  82  86  89  91  94  97  98 100 100 100 100 100 100 100  
 LCS      87       P    10   20  123       C       22  45  61  70  73  78  82  86  89  91  94  97  98 100 100 100 100 100 100 100  
 LCS      88       S    10   20  123       C       17  45  61  70  73  78  82  86  89  91  94  97  98 100 100 100 100 100 100 100  
 LCS      89       N    10   20  123       C        8  44  61  70  73  78  82  86  89  91  94  97  98 100 100 100 100 100 100 100  
 LCS      90       P    10   20  123       C        8  44  61  70  73  78  82  86  89  91  94  97  98 100 100 100 100 100 100 100  
 LCS      91       Q     3   20  123       C        2   5  13  35  52  67  75  82  86  91  93  95  97 100 100 100 100 100 100 100  
 LCS      92       S     3   20  123       C        2   3  13  23  46  69  76  82  86  91  94  95  98 100 100 100 100 100 100 100  
 LCS      93       W     3   20  123       C        2   2   4  21  44  70  78  82  86  91  94  97  98 100 100 100 100 100 100 100  
 LCS      94       Q     3   31  123       C        2   2  25  42  54  77  80  85  89  91  94  97  98 100 100 100 100 100 100 100  
 LCS      95       L     5   31  123       C        8  45  61  70  73  78  82  86  89  91  94  97  98 100 100 100 100 100 100 100  
 LCS      96       C     5   31  123       E       22  45  61  70  73  78  82  86  89  91  94  97  98 100 100 100 100 100 100 100  
 LCS      97       V    10   31  123       E       20  43  61  70  73  78  82  86  89  91  94  97  98 100 100 100 100 100 100 100  
 LCS      98       Q    10   31  123       E       20  45  61  70  73  78  82  86  89  91  94  97  98 100 100 100 100 100 100 100  
 LCS      99       I    10   31  123       E        7  45  61  70  73  78  82  86  89  91  94  97  98 100 100 100 100 100 100 100  
 LCS     100       W    10   31  123       E        4   7  26  60  72  77  82  86  89  91  94  97  98 100 100 100 100 100 100 100  
 LCS     101       S    10   31  123       C        4   7  12  20  39  51  74  82  86  91  94  97  98 100 100 100 100 100 100 100  
 LCS     102       K    10   31  123       C        4   7   9  18  31  45  58  75  83  90  93  97  98 100 100 100 100 100 100 100  
 LCS     103       Y    10   31  123       C        4   9  38  60  72  77  82  86  89  91  94  97  98 100 100 100 100 100 100 100  
 LCS     104       N    17   31  123       C        4  16  28  54  71  77  82  86  89  91  94  97  98 100 100 100 100 100 100 100  
 LCS     105       L    20   31  123       E        8  44  61  70  73  78  82  86  89  91  94  97  98 100 100 100 100 100 100 100  
 LCS     106       L    20   31  123       E       22  45  61  70  73  78  82  86  89  91  94  97  98 100 100 100 100 100 100 100  
 LCS     107       D    20   31  123       E       22  45  61  70  73  78  82  86  89  91  94  97  98 100 100 100 100 100 100 100  
 LCS     108       D    20   31  123       E       22  45  61  70  73  78  82  86  89  91  94  97  98 100 100 100 100 100 100 100  
 LCS     109       V    20   31  123       E       17  43  61  70  73  78  82  86  89  91  94  97  98 100 100 100 100 100 100 100  
 LCS     110       G    20   31  123       C       14  41  60  70  73  78  82  86  89  91  94  97  98 100 100 100 100 100 100 100  
 LCS     111       C    20   31  123       C       22  45  61  70  73  78  82  86  89  91  94  97  98 100 100 100 100 100 100 100  
 LCS     112       G    20   31  123       C       22  45  61  70  73  78  82  86  89  91  94  97  98 100 100 100 100 100 100 100  
 LCS     113       G    20   31  123       C       22  45  61  70  73  78  82  86  89  91  94  97  98 100 100 100 100 100 100 100  
 LCS     114       A    20   31  123       C       22  45  61  70  73  78  82  86  89  91  94  97  98 100 100 100 100 100 100 100  
 LCS     115       R    20   31  123       E       22  45  61  70  73  78  82  86  89  91  94  97  98 100 100 100 100 100 100 100  
 LCS     116       R    20   31  123       E       16  45  61  70  73  78  82  86  89  91  94  97  98 100 100 100 100 100 100 100  
 LCS     117       V    20   31  123       E       11  45  61  70  73  78  82  86  89  91  94  97  98 100 100 100 100 100 100 100  
 LCS     118       I    20   31  123       E       22  45  61  70  73  78  82  86  89  91  94  97  98 100 100 100 100 100 100 100  
 LCS     119       C    20   31  123       E       22  45  61  70  73  78  82  86  89  91  94  97  98 100 100 100 100 100 100 100  
 LCS     120       E    20   31  123       E       22  45  61  70  73  78  82  86  89  91  94  97  98 100 100 100 100 100 100 100  
 LCS     121       K    20   31  123       E       12  45  61  70  73  78  82  86  89  91  94  97  98 100 100 100 100 100 100 100  
 LCS     122       E    20   31  123       E        3  34  55  70  73  78  82  86  89  91  94  97  98 100 100 100 100 100 100 100  
 LCS     123       L    20   31  123       C       12  39  56  70  73  78  82  86  89  91  94  97  98 100 100 100 100 100 100 100  
 LCS     124       D    20   31  123       C        2  20  52  70  73  78  82  86  89  91  94  97  98 100 100 100 100 100 100 100  
 LCS TOTAL_SCORE (RMS CUTOFF   1.00):  12.14 
 
 NUMBER_OF_CA_Tg:  123      NUMBER_OF_CA_Pr:  123      PERCENT_OF_CA: 100.00  
 
GLOBAL_DISTANCE_TEST (the largest set of residues under DISTANCE_CUTOFF (using LCS results)): 
 GDT DISTANCE_CUTOFF     0.50    1.00    1.50    2.00    2.50    3.00    3.50    4.00    4.50    5.00    5.50    6.00    6.50    7.00    7.50    8.00    8.50    9.00    9.50   10.00  
 GDT NUMBER_OF_CA_max      28      56      76      87      91      96     102     106     110     113     116     120     121     123     123     123     123     123     123     123  
 GDT PERCENT_OF_CA_Pr   22.76   45.53   61.79   70.73   73.98   78.05   82.93   86.18   89.43   91.87   94.31   97.56   98.37  100.00  100.00  100.00  100.00  100.00  100.00  100.00 
 GDT PERCENT_OF_CA_Tg   22.76   45.53   61.79   70.73   73.98   78.05   82.93   86.18   89.43   91.87   94.31   97.56   98.37  100.00  100.00  100.00  100.00  100.00  100.00  100.00 
 GDT FRAGMENT: Beg-End   6-120   3-121   3-121   2-123   2-124   2-123   2-124   2-124   2-124   2-124   2-124   2-124   2-124   2-124   2-124   2-124   2-124   2-124   2-124   2-124 
 GDT RMS_LOCAL           0.35    0.66    0.85    1.06    1.16    1.42    1.64    1.80    1.95    2.20    2.26    2.55    2.60    2.75    2.75    2.75    2.75    2.75    2.75    2.75 
 GDT RMS_ALL_CA          2.90    2.83    2.87    2.81    2.80    2.87    2.77    2.81    2.79    2.78    2.78    2.76    2.75    2.75    2.75    2.75    2.75    2.75    2.75    2.75 
 
 
 TEST (CA)  RMS =   2.75               (Number of atoms:  123) 
 
 (CA)  RMS:                   CRMSCA         NP     PP     TN 
     ALL . . . . . . . . . .    2.75        123   100.0   123     CRMSCA  
     CRN = ALL/NP  . . . . .    0.0224                            CRMSCA  
     SECONDARY STRUCTURE . .    1.91         57   100.0    57     CRMSCA  
     SURFACE . . . . . . . .    3.42         70   100.0    70     CRMSCA  
     BURIED  . . . . . . . .    1.46         53   100.0    53     CRMSCA  
 (MC)  RMS:                   CRMSMC         NP     PP     TN 
     ALL . . . . . . . . . .    2.81        606   100.0   606     CRMSMC  
     SECONDARY STRUCTURE . .    1.95        283   100.0   283     CRMSMC  
     SURFACE . . . . . . . .    3.47        342   100.0   342     CRMSMC  
     BURIED  . . . . . . . .    1.58        264   100.0   264     CRMSMC  
 (SC)  RMS:                   CRMSSC         NP     PP     TN 
     ALL . . . . . . . . . .    4.72        474   100.0   474     CRMSSC  
     RELIABLE SIDE CHAINS  .    4.65        408   100.0   408     CRMSSC  
     SECONDARY STRUCTURE . .    3.34        235   100.0   235     CRMSSC  
     SURFACE . . . . . . . .    5.75        250   100.0   250     CRMSSC  
     BURIED  . . . . . . . .    3.20        224   100.0   224     CRMSSC  
 (ALL) RMS:                   CRMSALL        NP     PP     TN 
     ALL . . . . . . . . . .    3.81        966   100.0   966     CRMSALL 
     SECONDARY STRUCTURE . .    2.71        463   100.0   463     CRMSALL 
     SURFACE . . . . . . . .    4.61        530   100.0   530     CRMSALL 
     BURIED  . . . . . . . .    2.52        436   100.0   436     CRMSALL 
 
Accuracy of estimates of atomic coordinate errors: model <-> target 
 
 (CA)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    1.689      0.564       0.285    123   100.0   123     ERRCA  
     SECONDARY STRUCTURE . .    1.103      0.495       0.253     57   100.0    57     ERRCA  
     SURFACE . . . . . . . .    2.350      0.648       0.324     70   100.0    70     ERRCA  
     BURIED  . . . . . . . .    0.817      0.452       0.234     53   100.0    53     ERRCA  
 (MC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    1.740      0.569       0.287    606   100.0   606     ERRMC  
     SECONDARY STRUCTURE . .    1.136      0.503       0.256    283   100.0   283     ERRMC  
     SURFACE . . . . . . . .    2.384      0.646       0.323    342   100.0   342     ERRMC  
     BURIED  . . . . . . . .    0.905      0.470       0.241    264   100.0   264     ERRMC  
 (SC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    3.219      0.693       0.347    474   100.0   474     ERRSC  
     RELIABLE SIDE CHAINS  .    3.106      0.680       0.341    408   100.0   408     ERRSC  
     SECONDARY STRUCTURE . .    2.257      0.654       0.328    235   100.0   235     ERRSC  
     SURFACE . . . . . . . .    4.375      0.770       0.385    250   100.0   250     ERRSC  
     BURIED  . . . . . . . .    1.929      0.607       0.305    224   100.0   224     ERRSC  
 (ALL) ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    2.418      0.625       0.315    966   100.0   966     ERRALL 
     SECONDARY STRUCTURE . .    1.670      0.573       0.289    463   100.0   463     ERRALL 
     SURFACE . . . . . . . .    3.253      0.701       0.350    530   100.0   530     ERRALL 
     BURIED  . . . . . . . .    1.404      0.534       0.271    436   100.0   436     ERRALL 
 
 
 
DISTANCES: Percent of total atoms where distance (target <-> model) in global 
           superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms 
            D < 1     D < 2     D < 3     D < 5    D < 10      NP      TN 
CA  (N)        45        83        93       110       123     123     123   DISTCA 
CA  (P)     36.59     67.48     75.61     89.43    100.00             123   DISTCA 
CA  (RMS)    0.71      1.11      1.31      1.99      2.75                   DISTCA 
 
ALL (N)       267       516       637       805       939     966     966   DISTALL 
ALL (P)     27.64     53.42     65.94     83.33     97.20             966   DISTALL 
ALL (RMS)    0.70      1.15      1.51      2.26      3.32                   DISTALL 
 
 
 
 
END of the results output 
