 
####################################################### 
#                                                     # 
#                        ACE                          # 
#                                                     # 
#        Ab-initio protein structure prediction       # 
#                         &                           # 
#               Comparative modeling                  # 
#                                                     # 
#                     Evaluator                       # 
#                                                     # 
#                ----------------- 11/1998            # 
#                                                     # 
#                         by                          # 
#           Adam Zemla & Ceslovas Venclovas           # 
#                                                     # 
#         Protein Structure Prediction Center         # 
#      Lawrence Livermore National Laboratory, CA     # 
#                                                     # 
####################################################### 
########################## 
#                        # 
#    ACE parameters:     # 
#                        # 
########################## 
# 
# MEASURES: 
# 
# For AB: 0 3 9 13 14 
# For CM: 0 1 2 3 6 7 8 9 10 11 12 13 14 18 
# 
ARMSMC  0 1 2     7 8 9    11 12 13 14 18 
ARMSSC  0 1 2 3 6 7 8 9    11 12 13 14 18 
# 
CRMSCA  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSMC  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSSC  0 1 2 3 6     9    11 12 13 14 18 
CRMSALL 0 1 2     7 8 9    11 12 13 14 18 
# 
D-E_CA  0 1 2     7 8 9    11 12 13 14 18 
D-E_MC  0 1 2     7 8 9    11 12 13 14 18 
D-E_SC  0 1 2 3 6 7 8 9    11 12 13 14 18 
D-E_ALL 0 1 2     7 8 9    11 12 13 14 18 
# 
# Output parameters 
# 
DIHED-OUTPUT        0         #    1 - ON, 0 - OFF 
RES-CONTACTS        0         #    1 - ON, 0 - OFF 
SS-OUTPUT           1         #    1 - ON, 0 - OFF 
PHI-PSI             0         #    1 - SEPARATELY, 0 - NO  
# 
# Calculation parameters 
# 
SOV-METHOD          1         #    0 - SOV 94,  1 - SOV 
# 
TEMP-FACTOR         30.0      #    Target structure temperature factor cutoff 
ACCESS-CUTOFF       0.20      #    Solvent accessibility cutoff   
ANGLES-CORRECT      30.0      #    target-model  (diff < 30.0)    
DSSP-HELIX          6         #    Secondary Structure subset: helix cutoff  
DSSP-STRAND         3         #    Secondary Structure subset: strand cutoff 
ROTAMERS-LIMIT      30.0      #    target-parent (diff > 30.0) 
ROTATION-MATRIX     0         #    1 - ON, 0 - OFF   
SC-SWAPPING         1         #    1 - ON, 0 - OFF    
SEP-CONTACTS        1         #    Separation interval along the chain 
RESIDUE-CONTACTS    8.0       #    Contact definition between two C-beta atoms 
# 
CRMS-METHOD         1         #    0 - ALL, 1 - CA, 2 - MC+CB, 3 - CA (iter)  
ITER-CUTOFF         2.5       #    DISTANCE cutoff (for CA (iter))  
LCS_GDT             1         #    LCS and GDT calculations (1 - ON, 0 - OFF) 
########################## 
#                        # 
#      ACE results:      # 
#                        # 
########################## 
 
 
 
#          The number of residues in SS section: 21 , MODEL 21 , TARGET 123 
#          The number of residues possible to evaluate: 21 
 
 
 SECONDARY STRUCTURE PREDICTION: 
       NUM    RES   SS   Prediction   Probability 
 SSP   104     N     C     C             1.00 
 SSP   105     L     E     C             1.00 
 SSP   106     L     E     C             1.00 
 SSP   107     D     E     C             1.00 
 SSP   108     D     E     C             1.00 
 SSP   109     V     E     C             1.00 
 SSP   110     G     C     C             1.00 
 SSP   111     C     C     C             1.00 
 SSP   112     G     C     C             1.00 
 SSP   113     G     C     C             1.00 
 SSP   114     A     C     C             1.00 
 SSP   115     R     E     C             1.00 
 SSP   116     R     E     C             1.00 
 SSP   117     V     E     C             1.00 
 SSP   118     I     E     C             1.00 
 SSP   119     C     E     C             1.00 
 SSP   120     E     E     C             1.00 
 SSP   121     K     E     C             1.00 
 SSP   122     E     E     C             1.00 
 SSP   123     L     C     C             1.00 
 SSP   124     D     C     C             1.00 
 
 NP      - Number of predicted residues 
 PP      - Percent of predicted residues 
 Q3      - Residues predicted correctly (H, E, C) 
 Qhelix  - Residues predicted correctly (HELIX) 
 Qstrand - Residues predicted correctly (STRAND) 
 Qcoil   - Residues predicted correctly (COIL) 
 SOV     - Segment overlap quantity 
 
                     Q3      Qhelix   Qstrand   Qcoil      PP 
 Qindex              38.1       0.0      0.0    100.0     17.1 
 
                     ALL      HELIX    STRAND    COIL      PP 
 SOV observed         9.5     100.0      0.0     25.0     17.1 
 
           Considered    Percent predicted   Percent predicted 
            segments        correctly         as wrong type 
 SEG            2               0.0               0.0 
 
         Number of wrong    Number of wrong 
             breaks             joins 
 B/J            0                 0 
 
  CONFIDENCE (P)     Average     NP    PP/BIN     Q3 
 BIN  0.90 - 1.00      1.00      21    100.0     38.1 
 
 BIN  0.00 - 1.00      1.00      21    100.0     38.1 
 
 
 
 
              predicted        number of target      total number   total number 
                as a         contacts possible in         of             of 
               contact         predicted subset:       contacts       contacts 
            percent  number    percent    number       in target    in prediction 
 CONTACTS:     0.0      0         0.0        0             0              0 
 
 
# WARNING! The number of residues with CB atom coordinates: MODEL 0 , TARGET 114 
 
# WARNING! TARGET 966 atoms, MODEL 906 atoms, 894 common with TARGET 
           Number of atoms possible to evaluate: 84 
 
MEASURES: 
 
 
ANGLES RMS : model <-> target 
 
 (MC: PHI+PSI) DIHED RMS:      ARMSMC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    41.76           77.5    40    16.4   244     ARMSMC  
     SECONDARY STRUCTURE . .    19.13           84.6    26    22.8   114     ARMSMC  
     SURFACE . . . . . . . .    57.27           68.4    19    13.8   138     ARMSMC  
     BURIED  . . . . . . . .    18.79           85.7    21    19.8   106     ARMSMC  
 (SC: CHI1) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0   105     ARMSSC1 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    97     ARMSSC1 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    50     ARMSSC1 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    57     ARMSSC1 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    48     ARMSSC1 
 (SC: CHI2) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    77     ARMSSC2 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    58     ARMSSC2 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    35     ARMSSC2 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    43     ARMSSC2 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    34     ARMSSC2 
 (SC: CHI3) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    23     ARMSSC3 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    18     ARMSSC3 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    14     ARMSSC3 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    14     ARMSSC3 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     9     ARMSSC3 
 (SC: CHI4) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0     8     ARMSSC4 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0     8     ARMSSC4 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0     5     ARMSSC4 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0     6     ARMSSC4 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     2     ARMSSC4 
 
COORDINATES RMS : model <-> target 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   5.00): 
 FRAGMENT  1  104 - 124  21   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    21    104 - 124      1.30     1.30 
  LCS LOCAL_SCORE:            100.00 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   2.00): 
 FRAGMENT  1  104 - 124  21   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    21    104 - 124      1.30     1.30 
  LCS LOCAL_SCORE:            100.00 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   1.00): 
 FRAGMENT  1  104 - 124  21   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    20    104 - 123      0.96     1.38 
  LCS LOCAL_SCORE:             91.38 
 
 
 LCS                   LENGTH_OF_THE 
 LCS  RESIDUE  RESIDUE    CONTINUOUS  SECONDARY 
 LCS   NUMBER     NAME       SEGMENT  STRUCTURE   GDT_DATA_COLUMNS (PERCENT OF THE TARGET) 
 LCS     104       N    20   21   21       C        2   4   6  13  16  16  17  17  17  17  17  17  17  17  17  17  17  17  17  17  
 LCS     105       L    20   21   21       E        4  11  15  15  16  16  17  17  17  17  17  17  17  17  17  17  17  17  17  17  
 LCS     106       L    20   21   21       E        6  13  15  15  16  16  17  17  17  17  17  17  17  17  17  17  17  17  17  17  
 LCS     107       D    20   21   21       E        8  13  15  15  16  16  17  17  17  17  17  17  17  17  17  17  17  17  17  17  
 LCS     108       D    20   21   21       E        8  13  15  15  16  16  17  17  17  17  17  17  17  17  17  17  17  17  17  17  
 LCS     109       V    20   21   21       E        8  13  15  15  16  16  17  17  17  17  17  17  17  17  17  17  17  17  17  17  
 LCS     110       G    20   21   21       C        6  13  15  15  16  16  17  17  17  17  17  17  17  17  17  17  17  17  17  17  
 LCS     111       C    20   21   21       C        8  13  15  15  16  16  17  17  17  17  17  17  17  17  17  17  17  17  17  17  
 LCS     112       G    20   21   21       C        8  13  15  15  16  16  17  17  17  17  17  17  17  17  17  17  17  17  17  17  
 LCS     113       G    20   21   21       C        8  13  15  15  16  16  17  17  17  17  17  17  17  17  17  17  17  17  17  17  
 LCS     114       A    20   21   21       C        8  13  15  15  16  16  17  17  17  17  17  17  17  17  17  17  17  17  17  17  
 LCS     115       R    20   21   21       E        8  13  15  15  16  16  17  17  17  17  17  17  17  17  17  17  17  17  17  17  
 LCS     116       R    20   21   21       E        8  13  15  15  16  16  17  17  17  17  17  17  17  17  17  17  17  17  17  17  
 LCS     117       V    20   21   21       E        7  13  15  15  16  16  17  17  17  17  17  17  17  17  17  17  17  17  17  17  
 LCS     118       I    20   21   21       E        7  13  15  15  16  16  17  17  17  17  17  17  17  17  17  17  17  17  17  17  
 LCS     119       C    20   21   21       E        8  13  15  15  16  16  17  17  17  17  17  17  17  17  17  17  17  17  17  17  
 LCS     120       E    20   21   21       E        7  13  15  15  16  16  17  17  17  17  17  17  17  17  17  17  17  17  17  17  
 LCS     121       K    20   21   21       E        3  10  15  15  16  16  17  17  17  17  17  17  17  17  17  17  17  17  17  17  
 LCS     122       E    20   21   21       E        3   8  15  15  16  16  17  17  17  17  17  17  17  17  17  17  17  17  17  17  
 LCS     123       L    20   21   21       C        8  13  15  15  16  16  17  17  17  17  17  17  17  17  17  17  17  17  17  17  
 LCS     124       D     3   21   21       C        0   2   3   4   4  16  17  17  17  17  17  17  17  17  17  17  17  17  17  17  
 LCS TOTAL_SCORE (RMS CUTOFF   1.00):   2.66 
 
 NUMBER_OF_CA_Tg:  123      NUMBER_OF_CA_Pr:   21      PERCENT_OF_CA:  17.07  
 
GLOBAL_DISTANCE_TEST (the largest set of residues under DISTANCE_CUTOFF (using LCS results)): 
 GDT DISTANCE_CUTOFF     0.50    1.00    1.50    2.00    2.50    3.00    3.50    4.00    4.50    5.00    5.50    6.00    6.50    7.00    7.50    8.00    8.50    9.00    9.50   10.00  
 GDT NUMBER_OF_CA_max      10      16      19      19      20      20      21      21      21      21      21      21      21      21      21      21      21      21      21      21  
 GDT PERCENT_OF_CA_Pr   47.62   76.19   90.48   90.48   95.24   95.24  100.00  100.00  100.00  100.00  100.00  100.00  100.00  100.00  100.00  100.00  100.00  100.00  100.00  100.00 
 GDT PERCENT_OF_CA_Tg    8.13   13.01   15.45   15.45   16.26   16.26   17.07   17.07   17.07   17.07   17.07   17.07   17.07   17.07   17.07   17.07   17.07   17.07   17.07   17.07 
 GDT FRAGMENT: Beg-End 107-123 106-123 105-123 105-123 104-123 104-123 104-124 104-124 104-124 104-124 104-124 104-124 104-124 104-124 104-124 104-124 104-124 104-124 104-124 104-124 
 GDT RMS_LOCAL           0.39    0.56    0.77    0.77    0.96    0.96    1.30    1.30    1.30    1.30    1.30    1.30    1.30    1.30    1.30    1.30    1.30    1.30    1.30    1.30 
 GDT RMS_ALL_CA          1.36    1.38    1.39    1.39    1.38    1.38    1.30    1.30    1.30    1.30    1.30    1.30    1.30    1.30    1.30    1.30    1.30    1.30    1.30    1.30 
 
 
 TEST (CA)  RMS =   1.30               (Number of atoms:   21) 
 
 (CA)  RMS:                   CRMSCA         NP     PP     TN 
     ALL . . . . . . . . . .    1.30         21    17.1   123     CRMSCA  
     CRN = ALL/NP  . . . . .    0.0620                            CRMSCA  
     SECONDARY STRUCTURE . .    1.00         13    22.8    57     CRMSCA  
     SURFACE . . . . . . . .    1.55         10    14.3    70     CRMSCA  
     BURIED  . . . . . . . .    1.03         11    20.8    53     CRMSCA  
 (MC)  RMS:                   CRMSMC         NP     PP     TN 
     ALL . . . . . . . . . .    1.32         84    13.9   606     CRMSMC  
     SECONDARY STRUCTURE . .    0.95         52    18.4   283     CRMSMC  
     SURFACE . . . . . . . .    1.62         40    11.7   342     CRMSMC  
     BURIED  . . . . . . . .    0.96         44    16.7   264     CRMSMC  
 (SC)  RMS:                   CRMSSC         NP     PP     TN 
     ALL . . . . . . . . . .    0.00          0     0.0   474     CRMSSC  
     RELIABLE SIDE CHAINS  .    0.00          0     0.0   408     CRMSSC  
     SECONDARY STRUCTURE . .    0.00          0     0.0   235     CRMSSC  
     SURFACE . . . . . . . .    0.00          0     0.0   250     CRMSSC  
     BURIED  . . . . . . . .    0.00          0     0.0   224     CRMSSC  
 (ALL) RMS:                   CRMSALL        NP     PP     TN 
     ALL . . . . . . . . . .    1.32         84     8.7   966     CRMSALL 
     SECONDARY STRUCTURE . .    0.95         52    11.2   463     CRMSALL 
     SURFACE . . . . . . . .    1.62         40     7.5   530     CRMSALL 
     BURIED  . . . . . . . .    0.96         44    10.1   436     CRMSALL 
 
Accuracy of estimates of atomic coordinate errors: model <-> target 
 
 (CA)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    1.005      1.000       0.500     21    17.1   123     ERRCA  
     SECONDARY STRUCTURE . .    0.882      1.000       0.500     13    22.8    57     ERRCA  
     SURFACE . . . . . . . .    1.181      1.000       0.500     10    14.3    70     ERRCA  
     BURIED  . . . . . . . .    0.845      1.000       0.500     11    20.8    53     ERRCA  
 (MC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    1.002      1.000       0.500     84    13.9   606     ERRMC  
     SECONDARY STRUCTURE . .    0.850      1.000       0.500     52    18.4   283     ERRMC  
     SURFACE . . . . . . . .    1.209      1.000       0.500     40    11.7   342     ERRMC  
     BURIED  . . . . . . . .    0.814      1.000       0.500     44    16.7   264     ERRMC  
 (SC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    0.000      0.000       0.000      0     0.0   474     ERRSC  
     RELIABLE SIDE CHAINS  .    0.000      0.000       0.000      0     0.0   408     ERRSC  
     SECONDARY STRUCTURE . .    0.000      0.000       0.000      0     0.0   235     ERRSC  
     SURFACE . . . . . . . .    0.000      0.000       0.000      0     0.0   250     ERRSC  
     BURIED  . . . . . . . .    0.000      0.000       0.000      0     0.0   224     ERRSC  
 (ALL) ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    1.002      1.000       0.500     84     8.7   966     ERRALL 
     SECONDARY STRUCTURE . .    0.850      1.000       0.500     52    11.2   463     ERRALL 
     SURFACE . . . . . . . .    1.209      1.000       0.500     40     7.5   530     ERRALL 
     BURIED  . . . . . . . .    0.814      1.000       0.500     44    10.1   436     ERRALL 
 
 
 
DISTANCES: Percent of total atoms where distance (target <-> model) in global 
           superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms 
            D < 1     D < 2     D < 3     D < 5    D < 10      NP      TN 
CA  (N)        14        19        20        21        21      21     123   DISTCA 
CA  (P)     11.38     15.45     16.26     17.07     17.07             123   DISTCA 
CA  (RMS)    0.59      0.89      1.04      1.30      1.30                   DISTCA 
 
ALL (N)        58        78        81        83        84      84     966   DISTALL 
ALL (P)      6.00      8.07      8.39      8.59      8.70             966   DISTALL 
ALL (RMS)    0.61      0.91      1.03      1.19      1.32                   DISTALL 
 
 
 
 
END of the results output 
