 
####################################################### 
#                                                     # 
#                        ACE                          # 
#                                                     # 
#        Ab-initio protein structure prediction       # 
#                         &                           # 
#               Comparative modeling                  # 
#                                                     # 
#                     Evaluator                       # 
#                                                     # 
#                ----------------- 11/1998            # 
#                                                     # 
#                         by                          # 
#           Adam Zemla & Ceslovas Venclovas           # 
#                                                     # 
#         Protein Structure Prediction Center         # 
#      Lawrence Livermore National Laboratory, CA     # 
#                                                     # 
####################################################### 
########################## 
#                        # 
#    ACE parameters:     # 
#                        # 
########################## 
# 
# MEASURES: 
# 
# For AB: 0 3 9 13 14 
# For CM: 0 1 2 3 6 7 8 9 10 11 12 13 14 18 
# 
ARMSMC  0 1 2     7 8 9    11 12 13 14 18 
ARMSSC  0 1 2 3 6 7 8 9    11 12 13 14 18 
# 
CRMSCA  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSMC  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSSC  0 1 2 3 6     9    11 12 13 14 18 
CRMSALL 0 1 2     7 8 9    11 12 13 14 18 
# 
D-E_CA  0 1 2     7 8 9    11 12 13 14 18 
D-E_MC  0 1 2     7 8 9    11 12 13 14 18 
D-E_SC  0 1 2 3 6 7 8 9    11 12 13 14 18 
D-E_ALL 0 1 2     7 8 9    11 12 13 14 18 
# 
# Output parameters 
# 
DIHED-OUTPUT        0         #    1 - ON, 0 - OFF 
RES-CONTACTS        0         #    1 - ON, 0 - OFF 
SS-OUTPUT           1         #    1 - ON, 0 - OFF 
PHI-PSI             0         #    1 - SEPARATELY, 0 - NO  
# 
# Calculation parameters 
# 
SOV-METHOD          1         #    0 - SOV 94,  1 - SOV 
# 
TEMP-FACTOR         30.0      #    Target structure temperature factor cutoff 
ACCESS-CUTOFF       0.20      #    Solvent accessibility cutoff   
ANGLES-CORRECT      30.0      #    target-model  (diff < 30.0)    
DSSP-HELIX          6         #    Secondary Structure subset: helix cutoff  
DSSP-STRAND         3         #    Secondary Structure subset: strand cutoff 
ROTAMERS-LIMIT      30.0      #    target-parent (diff > 30.0) 
ROTATION-MATRIX     0         #    1 - ON, 0 - OFF   
SC-SWAPPING         1         #    1 - ON, 0 - OFF    
SEP-CONTACTS        1         #    Separation interval along the chain 
RESIDUE-CONTACTS    8.0       #    Contact definition between two C-beta atoms 
# 
CRMS-METHOD         1         #    0 - ALL, 1 - CA, 2 - MC+CB, 3 - CA (iter)  
ITER-CUTOFF         2.5       #    DISTANCE cutoff (for CA (iter))  
LCS_GDT             1         #    LCS and GDT calculations (1 - ON, 0 - OFF) 
########################## 
#                        # 
#      ACE results:      # 
#                        # 
########################## 
 
 
 
#          The number of residues in SS section: 83 , MODEL 83 , TARGET 202 
#          The number of residues possible to evaluate: 83 
 
 
 SECONDARY STRUCTURE PREDICTION: 
       NUM    RES   SS   Prediction   Probability 
 SSP    93     E     H     C             1.00 
 SSP    94     S     H     C             1.00 
 SSP    95     Y     H     E             1.00 
 SSP    96     Y     C     C             1.00 
 SSP    97     P     C     C             1.00 
 SSP    98     N     C     C             1.00 
 SSP    99     I     C     C             1.00 
 SSP   100     D     C     C             1.00 
 SSP   101     R     C     C             1.00 
 SSP   102     T     C     H             1.00 
 SSP   103     E     C     H             1.00 
 SSP   104     M     C     H             1.00 
 SSP   105     I     C     H             1.00 
 SSP   106     S     C     H             1.00 
 SSP   107     K     C     H             1.00 
 SSP   108     G     C     H             1.00 
 SSP   109     Y     C     C             1.00 
 SSP   110     V     C     C             1.00 
 SSP   111     A     C     C             1.00 
 SSP   112     S     C     C             1.00 
 SSP   113     K     C     C             1.00 
 SSP   114     S     C     C             1.00 
 SSP   115     S     H     H             1.00 
 SSP   116     H     H     H             1.00 
 SSP   117     S     H     H             1.00 
 SSP   118     R     H     H             1.00 
 SSP   119     G     C     C             1.00 
 SSP   120     S     C     C             1.00 
 SSP   121     A     E     E             1.00 
 SSP   122     I     E     E             1.00 
 SSP   123     D     E     E             1.00 
 SSP   124     L     E     E             1.00 
 SSP   125     T     E     C             1.00 
 SSP   126     L     E     C             1.00 
 SSP   127     Y     E     C             1.00 
 SSP   128     R     E     C             1.00 
 SSP   129     L     C     C             1.00 
 SSP   130     D     C     C             1.00 
 SSP   131     T     C     H             1.00 
 SSP   132     G     C     H             1.00 
 SSP   133     E     C     H             1.00 
 SSP   134     L     E     H             1.00 
 SSP   135     V     C     H             1.00 
 SSP   136     P     C     H             1.00 
 SSP   137     M     C     H             1.00 
 SSP   138     G     C     H             1.00 
 SSP   139     S     C     H             1.00 
 SSP   140     R     C     H             1.00 
 SSP   141     F     C     C             1.00 
 SSP   142     D     C     C             1.00 
 SSP   143     F     C     C             1.00 
 SSP  BREAK 
 SSP   168     S     H     C             1.00 
 SSP   169     I     H     E             1.00 
 SSP   170     M     H     E             1.00 
 SSP   171     E     H     E             1.00 
 SSP   172     N     C     C             1.00 
 SSP   173     S     C     C             1.00 
 SSP   174     G     C     C             1.00 
 SSP   175     F     E     C             1.00 
 SSP   176     E     E     C             1.00 
 SSP   177     A     E     C             1.00 
 SSP   178     Y     C     C             1.00 
 SSP   179     S     C     C             1.00 
 SSP  BREAK 
 SSP   181     E     C     C             1.00 
 SSP   182     W     C     C             1.00 
 SSP   183     W     C     E             1.00 
 SSP   184     H     E     E             1.00 
 SSP   185     Y     E     E             1.00 
 SSP   186     V     E     E             1.00 
 SSP   187     L     E     C             1.00 
 SSP   188     R     C     C             1.00 
 SSP   189     D     C     C             1.00 
 SSP   190     E     C     C             1.00 
 SSP   191     P     C     C             1.00 
 SSP   192     Y     C     E             1.00 
 SSP  BREAK 
 SSP   195     S     C     E             1.00 
 SSP   196     Y     C     E             1.00 
 SSP   197     F     C     C             1.00 
 SSP   198     D     C     C             1.00 
 SSP   199     F     C     C             1.00 
 SSP   200     P     C     C             1.00 
 SSP   201     V     E     C             1.00 
 SSP   202     K     C     C             1.00 
 
 NP      - Number of predicted residues 
 PP      - Percent of predicted residues 
 Q3      - Residues predicted correctly (H, E, C) 
 Qhelix  - Residues predicted correctly (HELIX) 
 Qstrand - Residues predicted correctly (STRAND) 
 Qcoil   - Residues predicted correctly (COIL) 
 SOV     - Segment overlap quantity 
 
                     Q3      Qhelix   Qstrand   Qcoil      PP 
 Qindex              55.4      36.4     41.2     63.6     41.1 
 
                     ALL      HELIX    STRAND    COIL      PP 
 SOV observed        54.8      36.4     58.8     56.6     41.1 
 
           Considered    Percent predicted   Percent predicted 
            segments        correctly         as wrong type 
 SEG            6              50.0              16.7 
 
         Number of wrong    Number of wrong 
             breaks             joins 
 B/J            0                 0 
 
  CONFIDENCE (P)     Average     NP    PP/BIN     Q3 
 BIN  0.90 - 1.00      1.00      83    100.0     55.4 
 
 BIN  0.00 - 1.00      1.00      83    100.0     55.4 
 
 
 
 
              predicted        number of target      total number   total number 
                as a         contacts possible in         of             of 
               contact         predicted subset:       contacts       contacts 
            percent  number    percent    number       in target    in prediction 
 CONTACTS:     0.0      0         0.0        0             0              0 
 
 
# WARNING! The number of residues with CB atom coordinates: MODEL 0 , TARGET 188 
 
# WARNING! TARGET 1650 atoms, MODEL 1294 atoms, 1294 common with TARGET 
           Number of atoms possible to evaluate: 332 
 
MEASURES: 
 
 
ANGLES RMS : model <-> target 
 
 (MC: PHI+PSI) DIHED RMS:      ARMSMC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    87.12           42.4   158    39.3   402     ARMSMC  
     SECONDARY STRUCTURE . .    80.26           48.6    37    26.1   142     ARMSMC  
     SURFACE . . . . . . . .    91.14           40.0    70    35.4   198     ARMSMC  
     BURIED  . . . . . . . .    83.78           44.3    88    43.1   204     ARMSMC  
 (SC: CHI1) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0   173     ARMSSC1 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0   163     ARMSSC1 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    59     ARMSSC1 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    89     ARMSSC1 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    84     ARMSSC1 
 (SC: CHI2) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0   137     ARMSSC2 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0   105     ARMSSC2 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    48     ARMSSC2 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    76     ARMSSC2 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    61     ARMSSC2 
 (SC: CHI3) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    49     ARMSSC3 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    45     ARMSSC3 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    19     ARMSSC3 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    39     ARMSSC3 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    10     ARMSSC3 
 (SC: CHI4) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    23     ARMSSC4 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    23     ARMSSC4 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0     9     ARMSSC4 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    19     ARMSSC4 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     4     ARMSSC4 
 
COORDINATES RMS : model <-> target 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   5.00): 
 FRAGMENT  1   93 - 143  51   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    28    102 - 129      4.73    13.53 
  LONGEST_CONTINUOUS_SEGMENT    28    103 - 130      4.86    13.49 
  LCS LOCAL_SCORE:             48.06 
 
 FRAGMENT  2  168 - 179  12   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    11    168 - 178      4.75     5.86 
  LCS LOCAL_SCORE:             89.58 
 
 FRAGMENT  3  181 - 192  12   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    12    181 - 192      3.97     3.97 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  4  195 - 202  8    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     8    195 - 202      4.30     4.30 
  LCS LOCAL_SCORE:            100.00 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   2.00): 
 FRAGMENT  1   93 - 143  51   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    20    109 - 128      1.99    14.89 
  LCS LOCAL_SCORE:             22.15 
 
 FRAGMENT  2  168 - 179  12   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     6    171 - 176      1.96     7.63 
  LCS LOCAL_SCORE:             40.28 
 
 FRAGMENT  3  181 - 192  12   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     8    182 - 189      1.92     7.63 
  LCS LOCAL_SCORE:             58.33 
 
 FRAGMENT  4  195 - 202  8    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     5    195 - 199      1.22     5.44 
  LONGEST_CONTINUOUS_SEGMENT     5    196 - 200      1.57     5.57 
  LCS LOCAL_SCORE:             59.38 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   1.00): 
 FRAGMENT  1   93 - 143  51   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    15    111 - 125      0.95    15.35 
  LCS LOCAL_SCORE:             15.26 
 
 FRAGMENT  2  168 - 179  12   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     4    173 - 176      0.60     9.30 
  LCS LOCAL_SCORE:             27.78 
 
 FRAGMENT  3  181 - 192  12   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     6    183 - 188      0.88     8.81 
  LCS LOCAL_SCORE:             40.28 
 
 FRAGMENT  4  195 - 202  8    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     4    196 - 199      0.52     5.37 
  LONGEST_CONTINUOUS_SEGMENT     4    199 - 202      0.57    12.15 
  LCS LOCAL_SCORE:             48.44 
 
 
 LCS                   LENGTH_OF_THE 
 LCS  RESIDUE  RESIDUE    CONTINUOUS  SECONDARY 
 LCS   NUMBER     NAME       SEGMENT  STRUCTURE   GDT_DATA_COLUMNS (PERCENT OF THE TARGET) 
 LCS      93       E     3    3   22       H        1   1   1   1   1   1   1   1   3   4   4   4   5   9   9  10  11  12  12  13  
 LCS      94       S     3    3   22       H        1   1   1   1   1   2   3   3   6   8   8   9  10  10  10  11  12  20  23  24  
 LCS      95       Y     3    4   22       H        1   1   1   1   1   2   3   4   7   8   8   9  10  10  13  18  21  22  23  24  
 LCS      96       Y     3    4   22       C        1   1   1   1   1   2   4   5   7   8   8   9  10  10  13  17  21  21  23  24  
 LCS      97       P     4    6   22       C        1   1   1   2   2   4   5   6   7   8   8   9  10  10  10  11  11  12  22  24  
 LCS      98       N     4    6   22       C        1   1   1   2   2   4   5   6   6   7   7   8   9   9  10  10  11  11  11  12  
 LCS      99       I     4    6   22       C        1   1   1   2   2   4   5   6   6   7   8   8   9  10  10  11  11  12  12  22  
 LCS     100       D     4    6   22       C        1   1   1   2   2   4   5   6   7   8   8   8  10  10  10  11  11  18  22  24  
 LCS     101       R     8    8   22       C        1   1   3   3   4   5   5   6  12  13  14  14  15  16  17  19  22  23  24  24  
 LCS     102       T     8    8   28       C        1   2   3   3   4   5   5   6  12  13  14  14  15  17  19  21  22  23  24  24  
 LCS     103       E     8    8   28       C        1   2   3   3   6   7   8   9  12  13  14  16  17  19  21  21  22  23  24  24  
 LCS     104       M     8    8   28       C        1   2   3   4   6   7   8  10  12  13  15  16  18  20  21  21  22  23  24  24  
 LCS     105       I     8    8   28       C        1   2   3   3   4   6   8  10  12  14  15  16  18  20  21  21  22  23  24  24  
 LCS     106       S     8    8   28       C        1   2   3   3   4   6   8  10  12  14  15  16  18  20  21  21  22  23  24  24  
 LCS     107       K     8    8   28       C        1   2   3   3   5   7   8  10  12  14  15  16  18  20  21  21  22  23  24  24  
 LCS     108       G     8    8   28       C        1   2   3   3   4   5   8  10  12  14  15  16  18  20  21  21  22  23  24  24  
 LCS     109       Y     4   20   28       C        1   1   2   6   7  10  11  12  13  14  15  16  18  20  21  21  22  23  24  24  
 LCS     110       V     7   20   28       C        1   2   7   9  11  11  11  12  13  14  15  16  18  20  21  21  22  23  24  24  
 LCS     111       A    15   20   28       C        5   7   8  10  11  11  11  12  13  14  14  16  18  20  21  21  22  23  24  24  
 LCS     112       S    15   20   28       C        1   4   8  10  11  11  11  12  13  14  14  16  18  20  21  21  22  23  24  24  
 LCS     113       K    15   20   28       C        2   4   7   9  10  11  11  12  13  14  15  16  18  20  21  21  22  23  24  24  
 LCS     114       S    15   20   28       C        3   7   8  10  11  11  11  12  13  14  15  16  18  20  21  21  22  23  24  24  
 LCS     115       S    15   20   28       H        5   7   8  10  11  11  11  12  13  14  15  16  18  20  21  21  22  23  24  24  
 LCS     116       H    15   20   28       H        5   7   8  10  11  11  11  12  13  14  15  16  18  20  21  21  22  23  24  24  
 LCS     117       S    15   20   28       H        5   7   8  10  11  11  11  12  13  14  15  16  18  20  21  21  22  23  24  24  
 LCS     118       R    15   20   28       H        5   7   8  10  11  11  11  12  13  14  15  16  18  20  21  21  22  23  24  24  
 LCS     119       G    15   20   28       C        5   7   8  10  11  11  11  12  13  14  15  16  18  20  21  21  22  23  24  24  
 LCS     120       S    15   20   28       C        1   5   8  10  11  11  11  12  13  14  15  16  18  20  21  21  22  23  24  24  
 LCS     121       A    15   20   28       E        5   7   8  10  11  11  11  12  13  14  15  16  18  20  21  21  22  23  24  24  
 LCS     122       I    15   20   28       E        5   7   8  10  11  11  11  12  13  14  15  16  18  20  21  21  22  23  24  24  
 LCS     123       D    15   20   28       E        5   7   8  10  11  11  11  12  13  14  15  16  18  20  21  21  22  23  24  24  
 LCS     124       L    15   20   28       E        5   7   8  10  11  11  11  12  13  14  15  16  18  20  21  21  22  23  24  24  
 LCS     125       T    15   20   28       E        1   2   7  10  11  11  11  12  13  14  15  16  18  20  21  21  22  23  24  24  
 LCS     126       L    12   20   28       E        1   2   5   8  11  11  11  12  13  14  15  16  18  20  21  21  22  23  24  24  
 LCS     127       Y     6   20   28       E        1   3   8  10  11  11  11  12  13  14  15  16  18  20  21  21  22  23  24  24  
 LCS     128       R     6   20   28       E        1   1   6  10  11  11  11  12  13  14  15  16  18  20  21  21  22  23  24  24  
 LCS     129       L     3   15   28       C        1   1   1   1   3   5   6   7   9  10  14  16  18  20  21  21  22  23  24  24  
 LCS     130       D     3    4   28       C        1   1   1   1   1   1   2   2   4   5   6   8  11  12  13  13  13  14  15  23  
 LCS     131       T     3    4   24       C        1   1   1   1   1   2   2   3   4   5   6   8   8   9  10  11  13  14  14  14  
 LCS     132       G     3    4   18       C        1   1   1   1   1   2   2   2   4   5   7   9  11  12  13  13  13  14  14  14  
 LCS     133       E     3    4   18       C        1   1   1   1   1   2   2   3   5   7   8   9  11  12  13  13  14  21  23  24  
 LCS     134       L     3    4   18       E        1   1   1   1   1   2   3   3   5   6   8   9  11  12  13  18  21  22  23  24  
 LCS     135       V     3    3   18       C        1   1   1   1   1   2   3   3   4   6   8   9  11  12  13  13  14  15  23  24  
 LCS     136       P     3    3   18       C        1   1   1   1   1   2   3   4   5   6   8   9  11  12  13  13  13  14  14  15  
 LCS     137       M     3    4   18       C        1   1   1   1   1   2   3   4   5   6   8   9  11  12  13  13  13  14  14  14  
 LCS     138       G     3    4   18       C        1   1   1   1   1   1   3   3   5   6   8   9  11  12  13  13  13  14  14  14  
 LCS     139       S     3    5   18       C        1   1   1   2   2   2   3   4   5   6   8   9  11  12  13  13  13  14  14  14  
 LCS     140       R     3    5   18       C        1   1   1   2   2   2   3   3   4   6   7   9  11  12  13  13  13  14  14  14  
 LCS     141       F     3    5   18       C        1   1   1   2   2   2   3   3   4   5   6   9  11  12  13  13  13  14  14  14  
 LCS     142       D     3    5   18       C        1   1   1   2   2   2   3   3   4   6   7   9  11  12  13  13  13  14  14  14  
 LCS     143       F     3    5   18       C        1   1   1   2   2   2   2   3   5   6   7   9  11  12  13  13  13  14  14  14  
 LCS     144       M     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     145       D     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     146       E     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     147       R     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     148       S     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     149       H     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     150       H     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     151       A     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     152       A     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     153       N     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     154       G     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     155       I     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     156       S     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     157       C     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     158       N     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     159       E     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     160       A     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     161       Q     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     162       N     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     163       R     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     164       R     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     165       R     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     166       L     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     167       R     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     168       S     3    3   11       H        0   1   1   1   1   1   1   1   1   3   3   4   4   4   5   6   9   9  12  12  
 LCS     169       I     3    3   11       H        0   1   1   1   1   1   1   3   3   4   4   4   4   4   5   7  12  12  13  17  
 LCS     170       M     3    3   11       H        0   1   1   1   1   1   2  10  12  14  15  16  18  20  21  21  22  23  24  24  
 LCS     171       E     3    6   11       H        0   1   1   1   2   2   2   6   9  14  15  16  18  20  21  21  22  23  24  24  
 LCS     172       N     3    6   11       C        1   1   1   1   2   2   2   3   3   4   4  11  17  18  21  21  22  23  24  24  
 LCS     173       S     4    6   11       C        1   1   1   2   2   2   5   7   9  10  14  15  16  18  19  21  22  23  24  24  
 LCS     174       G     4    6   11       C        1   1   1   2   6   7   8   9  12  13  14  15  16  17  19  21  22  23  24  24  
 LCS     175       F     4    6   11       E        1   2   3   4   6   7   8   9  12  13  14  15  17  19  21  21  22  23  24  24  
 LCS     176       E     4    6   11       E        1   2   3   4   6   7   8   9  12  13  14  15  17  19  21  21  22  23  24  24  
 LCS     177       A     3    5   11       E        1   2   3   4   6   7   8   9  12  13  15  16  18  20  21  21  22  23  24  24  
 LCS     178       Y     3    4   11       C        1   1   1   1   1   5   8  10  12  14  15  16  18  20  21  21  22  23  24  24  
 LCS     179       S     3    4    8       C        1   1   1   1   1   1   7   7   9  11  12  16  18  20  21  21  22  23  24  24  
 LCS     180       L     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     181       E     3    3   12       C        0   1   1   1   1   3   4   5   9   9  14  16  18  20  21  21  22  23  24  24  
 LCS     182       W     3    8   12       C        1   1   1   1   7  10  11  12  13  14  15  16  18  20  21  21  22  23  24  24  
 LCS     183       W     6    8   12       C        1   7   8  10  11  11  11  12  13  14  15  16  18  20  21  21  22  23  24  24  
 LCS     184       H     6    8   12       E        5   7   8  10  11  11  11  12  13  14  15  16  18  20  21  21  22  23  24  24  
 LCS     185       Y     6    8   12       E        5   7   8  10  11  11  11  12  13  14  15  16  18  20  21  21  22  23  24  24  
 LCS     186       V     6    8   12       E        5   7   8  10  11  11  11  12  13  14  15  16  18  20  21  21  22  23  24  24  
 LCS     187       L     6    8   12       E        1   2   7  10  11  11  11  12  13  14  15  16  18  20  20  21  22  23  24  24  
 LCS     188       R     6    8   12       C        1   1   2   2   2   4   5   9  12  13  14  14  16  18  19  20  20  21  22  22  
 LCS     189       D     4    8   12       C        1   1   2   4   6  10  11  12  13  14  15  16  18  20  20  21  22  22  23  24  
 LCS     190       E     4    6   12       C        1   1   1   3   4   7   8  10  12  14  15  16  18  20  21  21  22  23  24  24  
 LCS     191       P     4    6   12       C        1   1   2   3   4   6   8  10  11  12  15  16  18  20  21  21  22  23  24  24  
 LCS     192       Y     4    5   12       C        1   1   1   2   2   4   5   5  10  12  14  15  16  18  19  21  22  23  24  24  
 LCS     193       P     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     194       N     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     195       S     3    5    8       C        1   1   2   2   2   4   5   5   5   6   6   6   6   6   7   8   8   9  10  10  
 LCS     196       Y     4    5    8       C        1   1   2   2   2   2   5   5   5   6   6   6   6   6   7   8   8   9  10  10  
 LCS     197       F     4    5    8       C        1   1   2   2   2   4   5   5   5   6   6   6   6   6   7   8   8   9  10  10  
 LCS     198       D     4    5    8       C        1   1   2   2   2   2   3   3   4   6   6   6   6   6   7   8   8   9   9   9  
 LCS     199       F     4    5    8       C        1   1   2   2   2   2   3   3   4   5   5   5   5   6   6   6   7   8   8   9  
 LCS     200       P     4    5    8       C        1   1   1   1   2   2   2   3   4   5   5   5   5   6   6   6   7   7   8   8  
 LCS     201       V     4    4    8       E        1   1   1   1   1   1   2   3   3   3   3   3   3   3   4   5   7   7   8   8  
 LCS     202       K     4    4    8       C        1   1   1   1   1   1   1   1   1   2   2   2   6   6   7   7   7   7   8   8  
 LCS TOTAL_SCORE (RMS CUTOFF   1.00):   1.29 
 
 NUMBER_OF_CA_Tg:  202      NUMBER_OF_CA_Pr:   83      PERCENT_OF_CA:  41.09  
 
GLOBAL_DISTANCE_TEST (the largest set of residues under DISTANCE_CUTOFF (using LCS results)): 
 GDT DISTANCE_CUTOFF     0.50    1.00    1.50    2.00    2.50    3.00    3.50    4.00    4.50    5.00    5.50    6.00    6.50    7.00    7.50    8.00    8.50    9.00    9.50   10.00  
 GDT NUMBER_OF_CA_max      12      15      18      21      23      24      24      25      27      30      31      34      38      41      43      44      46      47      49      50  
 GDT PERCENT_OF_CA_Pr   14.46   18.07   21.69   25.30   27.71   28.92   28.92   30.12   32.53   36.14   37.35   40.96   45.78   49.40   51.81   53.01   55.42   56.63   59.04   60.24 
 GDT PERCENT_OF_CA_Tg    5.94    7.43    8.91   10.40   11.39   11.88   11.88   12.38   13.37   14.85   15.35   16.83   18.81   20.30   21.29   21.78   22.77   23.27   24.26   24.75 
 GDT FRAGMENT: Beg-End 111-186 111-186 111-186 111-187 110-187 110-187 110-187 110-187 109-189 105-190 105-190 105-190 104-191 104-191 103-191 103-191 102-192 102-192 101-192  95-191 
 GDT RMS_LOCAL           0.33    0.50    0.79    1.10    1.34    1.40    1.40    1.69    2.29    3.59    3.54    3.83    4.45    4.63    4.98    5.02    5.38    5.45    5.72    6.23 
 GDT RMS_ALL_CA         16.42   16.48   16.51   16.46   16.38   16.42   16.42   16.38   16.06   15.01   15.20   15.21   14.63   14.80   14.44   14.68   14.13   14.37   14.23   13.93 
 
 
 TEST (CA)  RMS =  12.48               (Number of atoms:   83) 
 
 (CA)  RMS:                   CRMSCA         NP     PP     TN 
     ALL . . . . . . . . . .   12.48         83    41.1   202     CRMSCA  
     CRN = ALL/NP  . . . . .    0.1503                            CRMSCA  
     SECONDARY STRUCTURE . .   10.32         19    26.8    71     CRMSCA  
     SURFACE . . . . . . . .   12.97         38    38.0   100     CRMSCA  
     BURIED  . . . . . . . .   12.04         45    44.1   102     CRMSCA  
 (MC)  RMS:                   CRMSMC         NP     PP     TN 
     ALL . . . . . . . . . .   12.46        332    33.3   996     CRMSMC  
     SECONDARY STRUCTURE . .   10.23         76    21.5   353     CRMSMC  
     SURFACE . . . . . . . .   12.87        152    30.8   494     CRMSMC  
     BURIED  . . . . . . . .   12.11        180    35.9   502     CRMSMC  
 (SC)  RMS:                   CRMSSC         NP     PP     TN 
     ALL . . . . . . . . . .    0.00          0     0.0   842     CRMSSC  
     RELIABLE SIDE CHAINS  .    0.00          0     0.0   740     CRMSSC  
     SECONDARY STRUCTURE . .    0.00          0     0.0   302     CRMSSC  
     SURFACE . . . . . . . .    0.00          0     0.0   422     CRMSSC  
     BURIED  . . . . . . . .    0.00          0     0.0   420     CRMSSC  
 (ALL) RMS:                   CRMSALL        NP     PP     TN 
     ALL . . . . . . . . . .   12.46        332    20.1  1650     CRMSALL 
     SECONDARY STRUCTURE . .   10.23         76    13.0   586     CRMSALL 
     SURFACE . . . . . . . .   12.87        152    18.5   822     CRMSALL 
     BURIED  . . . . . . . .   12.11        180    21.7   828     CRMSALL 
 
Accuracy of estimates of atomic coordinate errors: model <-> target 
 
 (CA)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   10.921      1.000       0.500     83    41.1   202     ERRCA  
     SECONDARY STRUCTURE . .    9.071      1.000       0.500     19    26.8    71     ERRCA  
     SURFACE . . . . . . . .   11.404      1.000       0.500     38    38.0   100     ERRCA  
     BURIED  . . . . . . . .   10.513      1.000       0.500     45    44.1   102     ERRCA  
 (MC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   10.920      1.000       0.500    332    33.3   996     ERRMC  
     SECONDARY STRUCTURE . .    9.068      1.000       0.500     76    21.5   353     ERRMC  
     SURFACE . . . . . . . .   11.319      1.000       0.500    152    30.8   494     ERRMC  
     BURIED  . . . . . . . .   10.582      1.000       0.500    180    35.9   502     ERRMC  
 (SC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    0.000      0.000       0.000      0     0.0   842     ERRSC  
     RELIABLE SIDE CHAINS  .    0.000      0.000       0.000      0     0.0   740     ERRSC  
     SECONDARY STRUCTURE . .    0.000      0.000       0.000      0     0.0   302     ERRSC  
     SURFACE . . . . . . . .    0.000      0.000       0.000      0     0.0   422     ERRSC  
     BURIED  . . . . . . . .    0.000      0.000       0.000      0     0.0   420     ERRSC  
 (ALL) ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   10.920      1.000       0.500    332    20.1  1650     ERRALL 
     SECONDARY STRUCTURE . .    9.068      1.000       0.500     76    13.0   586     ERRALL 
     SURFACE . . . . . . . .   11.319      1.000       0.500    152    18.5   822     ERRALL 
     BURIED  . . . . . . . .   10.582      1.000       0.500    180    21.7   828     ERRALL 
 
 
 
DISTANCES: Percent of total atoms where distance (target <-> model) in global 
           superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms 
            D < 1     D < 2     D < 3     D < 5    D < 10      NP      TN 
CA  (N)         0         2         6        11        45      83     202   DISTCA 
CA  (P)      0.00      0.99      2.97      5.45     22.28             202   DISTCA 
CA  (RMS)    0.00      1.11      2.15      3.00      6.92                   DISTCA 
 
ALL (N)         2        11        20        48       178     332    1650   DISTALL 
ALL (P)      0.12      0.67      1.21      2.91     10.79            1650   DISTALL 
ALL (RMS)    0.86      1.34      2.05      3.49      6.85                   DISTALL 
 
 
 
 
END of the results output 
