 
####################################################### 
#                                                     # 
#                        ACE                          # 
#                                                     # 
#        Ab-initio protein structure prediction       # 
#                         &                           # 
#               Comparative modeling                  # 
#                                                     # 
#                     Evaluator                       # 
#                                                     # 
#                ----------------- 11/1998            # 
#                                                     # 
#                         by                          # 
#           Adam Zemla & Ceslovas Venclovas           # 
#                                                     # 
#         Protein Structure Prediction Center         # 
#      Lawrence Livermore National Laboratory, CA     # 
#                                                     # 
####################################################### 
########################## 
#                        # 
#    ACE parameters:     # 
#                        # 
########################## 
# 
# MEASURES: 
# 
# For AB: 0 3 9 13 14 
# For CM: 0 1 2 3 6 7 8 9 10 11 12 13 14 18 
# 
ARMSMC  0 1 2     7 8 9    11 12 13 14 18 
ARMSSC  0 1 2 3 6 7 8 9    11 12 13 14 18 
# 
CRMSCA  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSMC  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSSC  0 1 2 3 6     9    11 12 13 14 18 
CRMSALL 0 1 2     7 8 9    11 12 13 14 18 
# 
D-E_CA  0 1 2     7 8 9    11 12 13 14 18 
D-E_MC  0 1 2     7 8 9    11 12 13 14 18 
D-E_SC  0 1 2 3 6 7 8 9    11 12 13 14 18 
D-E_ALL 0 1 2     7 8 9    11 12 13 14 18 
# 
# Output parameters 
# 
DIHED-OUTPUT        0         #    1 - ON, 0 - OFF 
RES-CONTACTS        0         #    1 - ON, 0 - OFF 
SS-OUTPUT           1         #    1 - ON, 0 - OFF 
PHI-PSI             0         #    1 - SEPARATELY, 0 - NO  
# 
# Calculation parameters 
# 
SOV-METHOD          1         #    0 - SOV 94,  1 - SOV 
# 
TEMP-FACTOR         30.0      #    Target structure temperature factor cutoff 
ACCESS-CUTOFF       0.20      #    Solvent accessibility cutoff   
ANGLES-CORRECT      30.0      #    target-model  (diff < 30.0)    
DSSP-HELIX          6         #    Secondary Structure subset: helix cutoff  
DSSP-STRAND         3         #    Secondary Structure subset: strand cutoff 
ROTAMERS-LIMIT      30.0      #    target-parent (diff > 30.0) 
ROTATION-MATRIX     0         #    1 - ON, 0 - OFF   
SC-SWAPPING         1         #    1 - ON, 0 - OFF    
SEP-CONTACTS        1         #    Separation interval along the chain 
RESIDUE-CONTACTS    8.0       #    Contact definition between two C-beta atoms 
# 
CRMS-METHOD         1         #    0 - ALL, 1 - CA, 2 - MC+CB, 3 - CA (iter)  
ITER-CUTOFF         2.5       #    DISTANCE cutoff (for CA (iter))  
LCS_GDT             1         #    LCS and GDT calculations (1 - ON, 0 - OFF) 
########################## 
#                        # 
#      ACE results:      # 
#                        # 
########################## 
 
 
 
# WARNING! The number of residues in SS section: 140 , MODEL 140 , TARGET 257 
#          The number of residues possible to evaluate: 140 
 
 
 SECONDARY STRUCTURE PREDICTION: 
       NUM    RES   SS   Prediction   Probability 
 SSP     9     S     E     C             1.00 
 SSP    10     F     C     C             1.00 
 SSP    11     G     C     C             1.00 
 SSP    12     T     C     C             1.00 
 SSP    13     S     C     H             1.00 
 SSP    14     Y     C     H             1.00 
 SSP    15     H     H     H             1.00 
 SSP    16     D     H     H             1.00 
 SSP    17     T     H     H             1.00 
 SSP    18     C     H     H             1.00 
 SSP    19     E     H     H             1.00 
 SSP    20     K     H     H             1.00 
 SSP    21     N     C     H             1.00 
 SSP    22     I     H     H             1.00 
 SSP    23     V     H     H             1.00 
 SSP    24     A     H     H             1.00 
 SSP    25     C     H     C             1.00 
 SSP    26     E     H     C             1.00 
 SSP    27     R     H     H             1.00 
 SSP    28     D     H     H             1.00 
 SSP    29     L     H     H             1.00 
 SSP    30     A     H     C             1.00 
 SSP    31     A     H     C             1.00 
 SSP    32     S     C     C             1.00 
 SSP    33     C     C     C             1.00 
 SSP    34     P     C     C             1.00 
 SSP    35     D     C     C             1.00 
 SSP    36     R     C     C             1.00 
 SSP    37     D     E     C             1.00 
 SSP    38     L     E     H             1.00 
 SSP    39     F     E     H             1.00 
 SSP    40     R     E     H             1.00 
 SSP    41     A     E     H             1.00 
 SSP    42     F     E     H             1.00 
 SSP    43     T     C     H             1.00 
 SSP    44     S     C     H             1.00 
 SSP    45     G     H     H             1.00 
 SSP    46     M     H     H             1.00 
 SSP    47     I     H     H             1.00 
 SSP    48     I     H     C             1.00 
 SSP    49     R     H     C             1.00 
 SSP    50     K     H     C             1.00 
 SSP    51     L     H     C             1.00 
 SSP    52     R     H     C             1.00 
 SSP    53     Q     H     H             1.00 
 SSP    54     R     H     H             1.00 
 SSP    55     D     H     H             1.00 
 SSP    56     G     C     H             1.00 
 SSP    57     I     C     H             1.00 
 SSP    58     D     C     C             1.00 
 SSP    59     I     C     C             1.00 
 SSP    60     D     C     H             1.00 
 SSP    61     T     C     H             1.00 
 SSP    62     P     H     H             1.00 
 SSP    63     L     H     H             1.00 
 SSP    64     Q     H     H             1.00 
 SSP    65     A     H     H             1.00 
 SSP    66     L     H     H             1.00 
 SSP    67     Q     H     H             1.00 
 SSP    68     K     H     H             1.00 
 SSP    69     L     H     H             1.00 
 SSP    70     A     H     H             1.00 
 SSP  BREAK 
 SSP    72     Q     C     H             1.00 
 SSP  BREAK 
 SSP    74     Y     C     H             1.00 
 SSP    75     Q     C     H             1.00 
 SSP    76     D     E     H             1.00 
 SSP    77     V     E     H             1.00 
 SSP    78     A     E     H             1.00 
 SSP    79     I     E     H             1.00 
 SSP    80     Q     E     H             1.00 
 SSP    81     S     E     H             1.00 
 SSP    82     L     C     C             1.00 
 SSP    83     H     C     C             1.00 
 SSP    84     I     C     C             1.00 
 SSP    85     I     E     C             1.00 
 SSP    86     N     C     C             1.00 
 SSP    87     G     C     C             1.00 
 SSP    88     D     H     C             1.00 
 SSP    89     E     H     C             1.00 
 SSP    90     Y     H     H             1.00 
 SSP    91     E     H     H             1.00 
 SSP    92     K     H     H             1.00 
 SSP    93     I     H     H             1.00 
 SSP    94     V     H     H             1.00 
 SSP    95     R     H     H             1.00 
 SSP    96     E     H     H             1.00 
 SSP    97     V     H     H             1.00 
 SSP    98     Q     H     H             1.00 
 SSP    99     L     H     H             1.00 
 SSP   100     L     H     H             1.00 
 SSP   101     R     H     H             1.00 
 SSP   102     P     H     H             1.00 
 SSP   103     L     H     H             1.00 
 SSP   104     F     C     H             1.00 
 SSP   105     T     C     H             1.00 
 SSP   106     R     E     C             1.00 
 SSP   107     L     E     C             1.00 
 SSP   108     T     E     C             1.00 
 SSP   109     L     E     C             1.00 
 SSP   110     G     C     C             1.00 
 SSP   111     V     C     H             1.00 
 SSP   112     P     C     H             1.00 
 SSP   113     L     C     H             1.00 
 SSP   114     L     E     H             1.00 
 SSP   115     S     C     H             1.00 
 SSP   116     S     C     H             1.00 
 SSP   117     H     H     H             1.00 
 SSP   118     N     H     H             1.00 
 SSP   119     D     H     H             1.00 
 SSP   120     Y     H     H             1.00 
 SSP   121     V     H     H             1.00 
 SSP   122     Q     H     C             1.00 
 SSP   123     L     H     C             1.00 
 SSP   124     M     H     C             1.00 
 SSP   125     Q     H     C             1.00 
 SSP   126     A     H     C             1.00 
 SSP   127     L     H     C             1.00 
 SSP   128     R     H     C             1.00 
 SSP   129     Q     C     C             1.00 
 SSP   130     Q     C     C             1.00 
 SSP   131     M     C     C             1.00 
 SSP   132     P     C     C             1.00 
 SSP   133     S     C     H             1.00 
 SSP   134     L     C     H             1.00 
 SSP   135     R     C     H             1.00 
 SSP   136     Q     C     C             1.00 
 SSP   137     T     C     C             1.00 
 SSP   138     E     E     C             1.00 
 SSP   139     K     E     C             1.00 
 SSP   140     V     E     C             1.00 
 SSP   141     V     E     C             1.00 
 SSP   142     F     E     C             1.00 
 SSP   143     M     E     C             1.00 
 SSP   144     G     E     C             1.00 
 SSP   145     H     C     C             1.00 
 SSP   146     G     C     C             1.00 
 SSP   147     A     C     C             1.00 
 SSP   148     S     C     C             1.00 
 SSP   149     H     H     C             1.00 
 SSP   150     H     H     C             1.00 
 SSP  BREAK 
 
 NP      - Number of predicted residues 
 PP      - Percent of predicted residues 
 Q3      - Residues predicted correctly (H, E, C) 
 Qhelix  - Residues predicted correctly (HELIX) 
 Qstrand - Residues predicted correctly (STRAND) 
 Qcoil   - Residues predicted correctly (COIL) 
 SOV     - Segment overlap quantity 
 
                     Q3      Qhelix   Qstrand   Qcoil      PP 
 Qindex              51.4      69.7      0.0     54.2     54.5 
 
                     ALL      HELIX    STRAND    COIL      PP 
 SOV observed        43.4      58.9      0.0     39.5     54.5 
 
           Considered    Percent predicted   Percent predicted 
            segments        correctly         as wrong type 
 SEG           12              50.0              16.7 
 
         Number of wrong    Number of wrong 
             breaks             joins 
 B/J            2                 1 
 
  CONFIDENCE (P)     Average     NP    PP/BIN     Q3 
 BIN  0.90 - 1.00      1.00     140    100.0     51.4 
 
 BIN  0.00 - 1.00      1.00     140    100.0     51.4 
 
 
 
 
              predicted        number of target      total number   total number 
                as a         contacts possible in         of             of 
               contact         predicted subset:       contacts       contacts 
            percent  number    percent    number       in target    in prediction 
 CONTACTS:     0.0      0         0.0        0             0              0 
 
 
# WARNING! The number of residues with CB atom coordinates: MODEL 0 , TARGET 241 
 
 ERROR! Check the common set of atoms between TARGET and MODEL 1439 1445 
# WARNING! TARGET 2018 atoms, MODEL 1487 atoms, 1439 common with TARGET 
           Number of atoms possible to evaluate: 560 
 
MEASURES: 
 
 
ANGLES RMS : model <-> target 
 
 (MC: PHI+PSI) DIHED RMS:      ARMSMC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    79.82           50.7   274    53.5   512     ARMSMC  
     SECONDARY STRUCTURE . .    75.20           58.2   177    55.3   320     ARMSMC  
     SURFACE . . . . . . . .    78.03           54.9   144    56.2   256     ARMSMC  
     BURIED  . . . . . . . .    81.76           46.2   130    50.8   256     ARMSMC  
 (SC: CHI1) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0   213     ARMSSC1 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0   196     ARMSSC1 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0   133     ARMSSC1 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0   112     ARMSSC1 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0   101     ARMSSC1 
 (SC: CHI2) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0   168     ARMSSC2 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0   121     ARMSSC2 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0   110     ARMSSC2 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    93     ARMSSC2 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    75     ARMSSC2 
 (SC: CHI3) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    60     ARMSSC3 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    46     ARMSSC3 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    44     ARMSSC3 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    44     ARMSSC3 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    16     ARMSSC3 
 (SC: CHI4) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    24     ARMSSC4 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    24     ARMSSC4 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    20     ARMSSC4 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    20     ARMSSC4 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     4     ARMSSC4 
 
COORDINATES RMS : model <-> target 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   5.00): 
 FRAGMENT  1    9 - 70   62   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    22     10 - 31       4.89    17.35 
  LONGEST_CONTINUOUS_SEGMENT    22     11 - 32       4.79    16.31 
  LCS LOCAL_SCORE:             31.37 
 
 FRAGMENT  2   74 - 150  77   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    25     82 - 106      4.81    29.76 
  LONGEST_CONTINUOUS_SEGMENT    25     83 - 107      4.55    28.21 
  LONGEST_CONTINUOUS_SEGMENT    25     84 - 108      4.70    27.25 
  LONGEST_CONTINUOUS_SEGMENT    25    100 - 124      5.00    23.25 
  LCS LOCAL_SCORE:             26.24 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   2.00): 
 FRAGMENT  1    9 - 70   62   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    15     14 - 28       1.95    18.10 
  LCS LOCAL_SCORE:             14.31 
 
 FRAGMENT  2   74 - 150  77   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    18     88 - 105      1.70    30.57 
  LONGEST_CONTINUOUS_SEGMENT    18     89 - 106      1.89    30.88 
  LCS LOCAL_SCORE:             11.71 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   1.00): 
 FRAGMENT  1    9 - 70   62   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    10     61 - 70       0.34    23.80 
  LCS LOCAL_SCORE:              9.76 
 
 FRAGMENT  2   74 - 150  77   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    17     89 - 105      0.86    31.67 
  LCS LOCAL_SCORE:              9.09 
 
 
 LCS                   LENGTH_OF_THE 
 LCS  RESIDUE  RESIDUE    CONTINUOUS  SECONDARY 
 LCS   NUMBER     NAME       SEGMENT  STRUCTURE   GDT_DATA_COLUMNS (PERCENT OF THE TARGET) 
 LCS       9       S     3    7   16       E        0   1   2   2   2   2   3   5   6   7   8   9  10  12  13  14  15  17  18  19  
 LCS      10       F     5    7   22       C        0   1   2   2   2   2   3   3   3   4   4   9  10  12  13  14  15  17  18  19  
 LCS      11       G     5    7   22       C        1   1   2   2   2   2   3   3   4   5   7   9  10  12  13  14  15  17  18  19  
 LCS      12       T     5    7   22       C        1   1   2   2   2   2   3   3   5   6   7   9  10  13  14  15  15  17  18  19  
 LCS      13       S     5    9   22       C        1   1   2   2   2   2   3   5   6   8  10  10  12  13  14  15  15  16  18  19  
 LCS      14       Y     9   15   22       C        1   3   3   4   5   6   6   7   8   8  10  10  12  13  14  15  15  17  18  19  
 LCS      15       H     9   15   22       H        2   3   3   4   5   6   6   7   8   8  10  10  12  13  14  15  15  17  18  19  
 LCS      16       D     9   15   22       H        2   3   3   4   5   6   6   7   8   8  10  10  12  13  14  15  15  17  18  19  
 LCS      17       T     9   15   22       H        2   3   3   4   5   6   6   7   8   8  10  10  12  13  14  15  15  16  18  19  
 LCS      18       C     9   15   22       H        2   3   3   4   5   6   6   7   8   8  10  10  12  13  14  15  15  17  18  19  
 LCS      19       E     9   15   22       H        2   3   3   4   5   6   6   7   8   8  10  10  12  13  14  15  15  17  18  19  
 LCS      20       K     9   15   22       H        2   3   3   4   5   6   6   7   8   8  10  10  12  13  14  15  15  16  17  18  
 LCS      21       N     9   15   22       C        2   3   3   4   7   7   8   8   8   8  10  10  12  13  14  15  15  16  16  17  
 LCS      22       I     9   15   22       H        2   3   3   4   5   7   8   8   8   8  10  10  12  13  14  15  15  16  16  17  
 LCS      23       V     8   15   22       H        1   3   3   4   5   6   8   8   8   8  10  10  12  13  14  15  15  16  16  17  
 LCS      24       A     8   15   22       H        2   3   3   4   5   6   6   7   8   8  10  10  12  13  14  15  15  16  16  17  
 LCS      25       C     8   15   22       H        2   3   3   4   5   6   6   7   8   8  10  10  12  13  14  15  15  16  16  17  
 LCS      26       E     8   15   22       H        2   3   3   4   5   6   6   7   8   8  10  10  12  13  14  15  15  16  16  17  
 LCS      27       R     8   15   22       H        2   3   3   3   4   5   6   6   7   8   8  10  11  12  14  15  15  16  16  17  
 LCS      28       D     5   15   22       H        1   1   1   1   3   6   6   7   8   8  10  10  12  13  14  15  15  16  16  17  
 LCS      29       L     5   14   22       H        1   1   1   3   5   6   6   7   8   8  10  10  12  13  14  15  15  16  16  17  
 LCS      30       A     5    6   22       H        1   1   1   1   2   4   6   7   8   8  10  10  12  13  14  15  15  16  16  17  
 LCS      31       A     3    6   22       H        1   1   1   1   1   2   4   6   7   8  10  10  12  13  14  15  15  16  16  17  
 LCS      32       S     4    4   22       C        1   1   1   1   2   3   3   3   5   7   8  10  11  12  14  15  15  16  16  17  
 LCS      33       C     4    4   21       C        1   1   1   1   2   3   3   3   4   5   7   8  11  12  13  13  14  16  16  17  
 LCS      34       P     4    5   19       C        1   1   1   1   2   3   3   3   4   4   5   7   9   9  12  13  14  15  16  16  
 LCS      35       D     4    5   19       C        1   1   1   1   2   3   3   3   4   5   5   5   6   7   9  10  11  12  14  15  
 LCS      36       R     4    5   19       C        1   1   1   1   1   2   3   3   4   4   5   6   7   9  10  11  12  12  14  15  
 LCS      37       D     4    5   19       E        1   1   1   1   1   2   3   3   4   4   5   6   7   8  10  11  12  13  14  15  
 LCS      38       L     4    5   19       E        1   1   1   5   7   7   8   8   8   8   8   8   9  11  13  13  14  15  16  17  
 LCS      39       F     3    4   19       E        1   1   1   1   1   2   3   3   4   7   8  10  11  13  14  15  15  16  16  17  
 LCS      40       R     3    3   19       E        0   1   1   1   1   2   3   7   7   7   8  10  12  13  14  15  15  16  16  18  
 LCS      41       A     3    3   19       E        0   1   1   1   1   2   3   3   4   7   7  10  11  12  14  15  15  16  17  19  
 LCS      42       F     3    4   19       E        1   1   1   1   1   2   4   5   6   7   9  10  11  13  14  15  15  16  17  19  
 LCS      43       T     3    6   19       C        1   1   1   1   3   4   5   6   7   8   9  10  12  13  14  15  15  16  17  18  
 LCS      44       S     5    6   19       C        1   1   1   1   3   4   5   6   7   8   9  10  12  13  14  15  15  17  18  19  
 LCS      45       G     5    6   19       H        1   1   1   1   3   4   5   6   7   8   9  10  12  13  14  15  15  17  18  19  
 LCS      46       M     5    6   19       H        1   1   1   1   4   4   6   6   7   7   8   8  11  12  13  14  15  17  18  19  
 LCS      47       I     5    6   19       H        1   1   1   2   3   3   3   5   6   7   8  10  11  12  14  15  15  17  18  19  
 LCS      48       I     5    6   19       H        1   1   1   2   3   3   3   5   6   8  10  10  12  13  14  15  15  17  18  19  
 LCS      49       R     3    5   19       H        1   2   3   4   5   5   6   7   8   8  10  10  12  13  14  15  15  17  18  19  
 LCS      50       K     3    5   19       H        1   1   2   4   5   6   6   7   8   8  10  10  12  13  14  15  15  17  18  19  
 LCS      51       L     3    6   19       H        0   1   1   1   2   2   3   4   6   8  10  10  12  13  14  15  15  16  16  19  
 LCS      52       R     4    6   19       H        1   1   1   1   2   3   4   5   7   8  10  10  12  13  14  15  15  16  16  17  
 LCS      53       Q     4    6   19       H        1   1   1   1   2   3   4   6   7   8  10  10  12  13  14  15  15  16  16  17  
 LCS      54       R     4    6   19       H        1   1   1   1   2   2   3   3   4   5   6   7  11  13  14  15  15  16  16  17  
 LCS      55       D     4    6   19       H        1   1   1   1   2   2   3   3   4   5   6   7   8  10  13  13  14  16  16  17  
 LCS      56       G     4    6   19       C        1   1   1   1   2   2   3   3   4   5   7   8  11  12  13  13  14  15  16  17  
 LCS      57       I     4    4   18       C        1   1   1   1   1   2   3   3   4   5   5   5   6   6   8   8   8  10  12  13  
 LCS      58       D     4    4   16       C        1   1   1   1   1   2   3   3   4   5   5   5   6   6   8   8   9  10  11  13  
 LCS      59       I     4    4   16       C        1   1   1   1   1   2   3   3   4   5   7   8  10  12  13  14  15  16  18  19  
 LCS      60       D     4   11   16       C        1   1   1   1   2   3   4   4   5   7   7   9  10  12  13  14  15  17  18  19  
 LCS      61       T    10   11   16       C        3   3   3   3   4   5   5   6   7   7   8   9  10  12  13  14  15  17  18  19  
 LCS      62       P    10   11   16       H        3   3   3   3   4   5   5   6   7   7   8   9  10  12  13  14  15  17  18  19  
 LCS      63       L    10   11   16       H        3   3   3   3   4   5   5   6   7   7   7   7   9  11  13  14  15  17  18  19  
 LCS      64       Q    10   11   16       H        3   3   3   3   4   5   5   6   7   7   8   9  10  11  13  14  15  17  18  19  
 LCS      65       A    10   11   16       H        3   3   3   3   4   5   5   6   7   7   7   8  10  11  13  14  15  17  18  19  
 LCS      66       L    10   11   16       H        3   3   3   3   4   5   5   6   7   7   7   7   8  10  10  11  14  16  17  18  
 LCS      67       Q    10   11   16       H        3   3   3   3   4   5   5   6   7   7   7   7   8  10  10  10  11  15  17  18  
 LCS      68       K    10   11   16       H        3   3   3   3   4   5   5   6   7   7   7   7   8  10  10  10  11  12  14  15  
 LCS      69       L    10   11   16       H        3   3   3   3   4   5   5   6   7   7   7   7   8  10  10  10  11  12  14  15  
 LCS      70       A    10   11   16       H        3   3   3   3   4   5   5   6   7   7   7   7   8  10  10  10  11  12  14  15  
 LCS      71       A     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      72       Q     0    0    0       C        0   1   1   1   3   5   5   6   7   7   7   7   8  10  10  10  11  12  12  12  
 LCS      73       G     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      74       Y     4    4    9       C        1   1   1   2   4   5   5   6   7   7   7   7   8  10  10  10  11  12  12  12  
 LCS      75       Q     4    4    9       C        1   1   1   1   4   5   5   6   7   7   7   7   8  10  10  10  11  12  12  12  
 LCS      76       D     4    4    9       E        1   1   1   1   1   1   1   2   7   7   7   7   8   8   8   9  10  11  11  12  
 LCS      77       V     4    4    9       E        0   1   1   1   1   1   1   2   3   3   3   4   4   4   5   6   7   7   7  12  
 LCS      78       A     3    3    9       E        0   1   1   1   1   1   1   2   3   3   3   4   4   5   6   7   8   8   8   9  
 LCS      79       I     3    3   11       E        1   1   1   1   1   1   1   2   2   2   3   4   4   5   6   7   8   9  10  10  
 LCS      80       Q     3    4   13       E        1   1   1   1   1   1   1   1   2   2   3   4   4   5   7   7   8   9  10  10  
 LCS      81       S     3    8   13       E        1   1   1   2   2   3   3   3   4   4   4   5   5   8   9  10  10  11  13  14  
 LCS      82       L     4    8   25       C        1   1   3   4   5   5   6   7   8   8  10  10  12  13  14  15  15  16  16  17  
 LCS      83       H     4    8   25       C        1   1   1   2   2   3   3   3   8   8  10  10  12  13  14  15  15  16  16  17  
 LCS      84       I     4    8   25       C        1   1   1   1   2   3   3   3   8   8  10  10  12  13  14  15  15  16  16  17  
 LCS      85       I     4    8   25       E        1   1   1   2   2   3   3   3   7   7   8   8   8   9   9  10  12  13  13  14  
 LCS      86       N     4    8   25       C        1   1   1   2   2   3   3   3   4   4   5   5   8   8   9   9  10  13  13  14  
 LCS      87       G     4    8   25       C        1   1   1   2   2   4   6   6   7   7   8   8   8   9  10  10  12  13  13  14  
 LCS      88       D     3   18   25       H        1   1   1   2   3   5   6   6   7   7   8   8   8   9  10  10  12  13  13  14  
 LCS      89       E    17   18   25       H        3   5   6   6   7   7   8   8   8   8   8   8   8   9  10  10  12  13  13  14  
 LCS      90       Y    17   18   25       H        3   5   6   6   7   7   8   8   8   8   8   8   8   9  10  10  12  13  13  14  
 LCS      91       E    17   18   25       H        3   5   6   6   7   7   8   8   8   8   8   8   8   9  10  10  12  13  13  14  
 LCS      92       K    17   18   25       H        3   5   6   6   7   7   8   8   8   8   8   8   8   9  10  10  12  13  13  14  
 LCS      93       I    17   18   25       H        3   5   6   6   7   7   8   8   8   8   8   8   8   9  10  10  12  13  13  14  
 LCS      94       V    17   18   25       H        3   5   6   6   7   7   8   8   8   8   8   8   8   9  10  10  12  13  13  14  
 LCS      95       R    17   18   25       H        3   5   6   6   7   7   8   8   8   8   8   8   8   9  10  10  12  13  13  14  
 LCS      96       E    17   18   25       H        3   5   6   6   7   7   8   8   8   8   8   8   8   9  10  10  12  13  13  14  
 LCS      97       V    17   18   25       H        3   5   6   6   7   7   8   8   8   8   8   8   8  10  10  10  12  13  15  17  
 LCS      98       Q    17   18   25       H        3   5   6   6   7   7   8   8   8   8   8   8   8  10  10  10  12  13  14  16  
 LCS      99       L    17   18   25       H        3   5   6   6   7   7   8   8   8   8   8   8   8  10  10  10  12  13  13  15  
 LCS     100       L    17   18   25       H        3   5   6   6   7   7   8   8   8   8   8   8   8  10  10  10  12  13  13  16  
 LCS     101       R    17   18   25       H        3   5   6   6   7   7   8   8   8   8   8   8   8   9  10  10  14  16  17  18  
 LCS     102       P    17   18   25       H        2   4   6   6   7   7   8   8   8   8   8   8   8   9  10  10  12  15  17  18  
 LCS     103       L    17   18   25       H        1   4   6   6   7   7   8   8   8   8   8   8   8   9  10  10  12  13  13  14  
 LCS     104       F    17   18   25       C        1   5   6   6   7   7   8   8   8   8   8   8   8   9  10  10  12  13  13  14  
 LCS     105       T    17   18   25       C        1   1   6   6   7   7   8   8   8   8   8   8   8   9  10  10  12  13  13  18  
 LCS     106       R     4   18   25       E        1   1   1   2   2   3   5   6   7   7   7   7   8  11  12  14  15  17  18  19  
 LCS     107       L     4    7   25       E        1   1   1   2   2   3   3   5   5   6   7   7   8   8  10  12  14  16  18  19  
 LCS     108       T     4    7   25       E        1   1   1   2   2   3   3   5   5   6   7   8  10  11  13  14  15  17  18  19  
 LCS     109       L     4    7   25       E        1   1   1   2   2   3   3   5   5   6   8   9  10  12  13  14  15  17  18  19  
 LCS     110       G     4    7   25       C        1   1   1   2   3   3   3   5   6   7   8   9  10  12  13  14  15  17  18  19  
 LCS     111       V     3    7   25       C        0   1   1   1   2   3   3   5   6   7   8   9  10  12  13  14  15  17  18  19  
 LCS     112       P     4    7   25       C        1   1   1   2   3   3   3   5   6   7   8   9  10  12  13  14  15  17  18  19  
 LCS     113       L     4    6   25       C        1   1   1   1   1   2   3   5   5   6   7   7   8  10  12  14  15  16  18  19  
 LCS     114       L     4    6   25       E        1   1   1   1   1   2   3   5   6   6   7   8  10  11  13  14  15  17  18  19  
 LCS     115       S     4    8   25       C        1   1   1   1   2   3   3   5   6   7   8   9  10  12  13  14  15  17  18  19  
 LCS     116       S     7    8   25       C        2   2   2   2   3   3   4   5   6   7   8   9  10  12  13  14  15  17  18  19  
 LCS     117       H     7    8   25       H        2   2   2   2   2   3   4   5   6   7   8   9  10  12  13  14  15  17  18  19  
 LCS     118       N     7    8   25       H        2   2   2   2   3   3   4   5   6   7   8   9  10  12  13  14  15  17  18  19  
 LCS     119       D     7    8   25       H        2   2   2   2   2   3   3   5   6   6   7   8  10  11  13  14  15  17  18  19  
 LCS     120       Y     7    8   25       H        2   2   2   2   2   3   3   5   5   6   7   7   8  10  11  12  14  15  16  18  
 LCS     121       V     7    8   25       H        2   2   2   2   2   3   3   5   5   6   7   7   8  10  11  12  14  15  16  18  
 LCS     122       Q     7    8   25       H        2   2   2   2   2   3   3   5   5   6   7   7   8   8  10  12  14  15  16  18  
 LCS     123       L     3    4   25       H        1   1   1   1   1   2   3   5   5   6   7   7   8   8   9  10  13  15  16  17  
 LCS     124       M     3    4   25       H        1   1   1   1   1   2   2   4   5   6   7   7   8  10  12  14  15  15  16  18  
 LCS     125       Q     3    3   23       H        1   1   1   3   4   5   5   6   6   7   8   9  10  12  13  14  15  17  18  19  
 LCS     126       A     3    3   23       H        0   1   1   2   3   3   3   5   6   7   8   9  10  12  13  14  15  17  18  19  
 LCS     127       L     3    3   23       H        1   1   1   1   3   3   4   5   7   7   8   9  10  12  13  14  15  17  18  19  
 LCS     128       R     3    3   21       H        1   1   1   1   1   3   4   5   6   7   8   9  10  12  13  14  15  17  18  19  
 LCS     129       Q     5    6   20       C        1   1   2   2   2   3   4   5   6   7   8   9  10  12  13  14  15  17  18  19  
 LCS     130       Q     5    6   16       C        1   1   2   2   2   3   4   5   6   7   8   9  10  12  13  14  15  17  18  19  
 LCS     131       M     5    6   16       C        1   1   2   2   2   3   4   5   6   7   8   9  10  12  13  14  15  17  18  19  
 LCS     132       P     5    6   16       C        1   1   2   2   2   3   4   5   6   7   8   9  10  12  13  14  15  17  18  19  
 LCS     133       S     5    6   16       C        1   1   2   2   2   2   3   5   6   6   7   7  10  12  13  14  15  17  18  19  
 LCS     134       L     5    6   16       C        1   1   2   2   2   2   3   5   6   6   7   9  10  12  13  14  15  17  18  19  
 LCS     135       R     3    4   16       C        1   1   1   1   1   2   3   5   6   6   7   7   8   8   8   9   9  10  11  13  
 LCS     136       Q     3    4   16       C        1   1   1   1   1   2   3   5   6   6   7   7   8   8   8   9   9  10  11  11  
 LCS     137       T     3    4   16       C        1   1   1   1   1   2   3   5   6   6   7   7   8   8   8   9   9  10  11  11  
 LCS     138       E     3    4   16       E        1   1   1   1   1   2   3   5   6   6   7   7   8   8   8   9   9  10  11  13  
 LCS     139       K     3    4   16       E        1   1   1   1   1   2   2   2   5   6   7   9  10  12  13  14  15  17  18  19  
 LCS     140       V     4    4   16       E        1   1   1   1   1   1   1   2   3   3   7   9  10  12  13  14  15  17  18  19  
 LCS     141       V     4    4   12       E        1   1   1   1   1   1   1   2   4   5   5   6   6   7   7  10  11  12  17  19  
 LCS     142       F     4    4   12       E        1   1   1   1   2   2   3   3   4   5   5   6   6   7   7   7   8  10  12  14  
 LCS     143       M     4    8   12       E        1   1   1   1   3   3   3   3   4   5   5   6   6   7   7   7   8  10  10  12  
 LCS     144       G     4    8   11       E        1   1   1   2   3   3   3   3   4   5   5   6   6   7   7   7   7   8   9  12  
 LCS     145       H     4    8   11       C        1   1   1   2   3   3   3   3   4   4   4   6   6   7   7   7   7   9  10  12  
 LCS     146       G     4    8   11       C        1   1   1   2   3   3   3   3   4   4   4   4   4   5   6   9  10  11  12  13  
 LCS     147       A     4    8   11       C        1   1   1   2   3   3   3   3   3   3   4   4   5   6   8  10  11  12  12  13  
 LCS     148       S     4    8   11       C        1   1   1   2   3   3   3   3   3   3   4   5   7   8   9  10  11  12  12  13  
 LCS     149       H     4    8   11       H        0   1   1   2   3   3   3   3   3   3   3   3   5   5   5   5  11  12  12  13  
 LCS     150       H     4    8   11       H        0   1   1   2   3   3   3   3   3   3   3   3   3   3   3   5   5   6   7  10  
 LCS TOTAL_SCORE (RMS CUTOFF   1.00):   1.38 
 
 NUMBER_OF_CA_Tg:  257      NUMBER_OF_CA_Pr:  140      PERCENT_OF_CA:  54.47  
 
GLOBAL_DISTANCE_TEST (the largest set of residues under DISTANCE_CUTOFF (using LCS results)): 
 GDT DISTANCE_CUTOFF     0.50    1.00    1.50    2.00    2.50    3.00    3.50    4.00    4.50    5.00    5.50    6.00    6.50    7.00    7.50    8.00    8.50    9.00    9.50   10.00  
 GDT NUMBER_OF_CA_max      10      14      16      17      18      19      21      21      21      23      27      28      31      35      36      39      40      44      47      51  
 GDT PERCENT_OF_CA_Pr    7.14   10.00   11.43   12.14   12.86   13.57   15.00   15.00   15.00   16.43   19.29   20.00   22.14   25.00   25.71   27.86   28.57   31.43   33.57   36.43 
 GDT PERCENT_OF_CA_Tg    3.89    5.45    6.23    6.61    7.00    7.39    8.17    8.17    8.17    8.95   10.51   10.89   12.06   13.62   14.01   15.18   15.56   17.12   18.29   19.84 
 GDT FRAGMENT: Beg-End  92-101  89-104  89-105  89-105  38-105  21-105  21-105  21-105  21-105  14-84   13-84   13-84   13-84   12-84   12-84   12-84   12-84    9-140   9-140   9-140 
 GDT RMS_LOCAL           0.31    0.54    0.77    0.86    1.13    1.35    1.81    1.81    1.81    3.28    3.95    4.04    4.59    5.02    5.08    5.43    5.54    6.49    6.73    7.04 
 GDT RMS_ALL_CA         27.54   27.72   27.47   27.40   27.56   27.60   27.71   27.71   27.71   34.21   33.50   33.64   33.10   32.73   32.85   32.68   32.75   19.03   19.07   19.16 
 
 
 TEST (CA)  RMS =  16.25               (Number of atoms:  140) 
 
 (CA)  RMS:                   CRMSCA         NP     PP     TN 
     ALL . . . . . . . . . .   16.25        140    54.5   257     CRMSCA  
     CRN = ALL/NP  . . . . .    0.1161                            CRMSCA  
     SECONDARY STRUCTURE . .   15.28         90    56.2   160     CRMSCA  
     SURFACE . . . . . . . .   16.31         74    57.4   129     CRMSCA  
     BURIED  . . . . . . . .   16.19         66    51.6   128     CRMSCA  
 (MC)  RMS:                   CRMSMC         NP     PP     TN 
     ALL . . . . . . . . . .   16.27        560    44.1  1269     CRMSMC  
     SECONDARY STRUCTURE . .   15.39        360    45.2   796     CRMSMC  
     SURFACE . . . . . . . .   16.32        296    46.3   639     CRMSMC  
     BURIED  . . . . . . . .   16.23        264    41.9   630     CRMSMC  
 (SC)  RMS:                   CRMSSC         NP     PP     TN 
     ALL . . . . . . . . . .    0.00          0     0.0   990     CRMSSC  
     RELIABLE SIDE CHAINS  .    0.00          0     0.0   802     CRMSSC  
     SECONDARY STRUCTURE . .    0.00          0     0.0   651     CRMSSC  
     SURFACE . . . . . . . .    0.00          0     0.0   542     CRMSSC  
     BURIED  . . . . . . . .    0.00          0     0.0   448     CRMSSC  
 (ALL) RMS:                   CRMSALL        NP     PP     TN 
     ALL . . . . . . . . . .   16.27        560    27.8  2018     CRMSALL 
     SECONDARY STRUCTURE . .   15.39        360    27.9  1291     CRMSALL 
     SURFACE . . . . . . . .   16.32        296    28.0  1058     CRMSALL 
     BURIED  . . . . . . . .   16.23        264    27.5   960     CRMSALL 
 
Accuracy of estimates of atomic coordinate errors: model <-> target 
 
 (CA)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   15.047      1.000       0.500    140    54.5   257     ERRCA  
     SECONDARY STRUCTURE . .   14.098      1.000       0.500     90    56.2   160     ERRCA  
     SURFACE . . . . . . . .   15.061      1.000       0.500     74    57.4   129     ERRCA  
     BURIED  . . . . . . . .   15.032      1.000       0.500     66    51.6   128     ERRCA  
 (MC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   15.081      1.000       0.500    560    44.1  1269     ERRMC  
     SECONDARY STRUCTURE . .   14.211      1.000       0.500    360    45.2   796     ERRMC  
     SURFACE . . . . . . . .   15.097      1.000       0.500    296    46.3   639     ERRMC  
     BURIED  . . . . . . . .   15.062      1.000       0.500    264    41.9   630     ERRMC  
 (SC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    0.000      0.000       0.000      0     0.0   990     ERRSC  
     RELIABLE SIDE CHAINS  .    0.000      0.000       0.000      0     0.0   802     ERRSC  
     SECONDARY STRUCTURE . .    0.000      0.000       0.000      0     0.0   651     ERRSC  
     SURFACE . . . . . . . .    0.000      0.000       0.000      0     0.0   542     ERRSC  
     BURIED  . . . . . . . .    0.000      0.000       0.000      0     0.0   448     ERRSC  
 (ALL) ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   15.081      1.000       0.500    560    27.8  2018     ERRALL 
     SECONDARY STRUCTURE . .   14.211      1.000       0.500    360    27.9  1291     ERRALL 
     SURFACE . . . . . . . .   15.097      1.000       0.500    296    28.0  1058     ERRALL 
     BURIED  . . . . . . . .   15.062      1.000       0.500    264    27.5   960     ERRALL 
 
 
 
DISTANCES: Percent of total atoms where distance (target <-> model) in global 
           superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms 
            D < 1     D < 2     D < 3     D < 5    D < 10      NP      TN 
CA  (N)         0         0         1         4        36     140     257   DISTCA 
CA  (P)      0.00      0.00      0.39      1.56     14.01             257   DISTCA 
CA  (RMS)    0.00      0.00      2.53      4.41      7.85                   DISTCA 
 
ALL (N)         0         0         3        15       138     560    2018   DISTALL 
ALL (P)      0.00      0.00      0.15      0.74      6.84            2018   DISTALL 
ALL (RMS)    0.00      0.00      2.75      4.17      7.83                   DISTALL 
 
 
 
 
END of the results output 
