 
####################################################### 
#                                                     # 
#                        ACE                          # 
#                                                     # 
#        Ab-initio protein structure prediction       # 
#                         &                           # 
#               Comparative modeling                  # 
#                                                     # 
#                     Evaluator                       # 
#                                                     # 
#                ----------------- 11/1998            # 
#                                                     # 
#                         by                          # 
#           Adam Zemla & Ceslovas Venclovas           # 
#                                                     # 
#         Protein Structure Prediction Center         # 
#      Lawrence Livermore National Laboratory, CA     # 
#                                                     # 
####################################################### 
########################## 
#                        # 
#    ACE parameters:     # 
#                        # 
########################## 
# 
# MEASURES: 
# 
# For AB: 0 3 9 13 14 
# For CM: 0 1 2 3 6 7 8 9 10 11 12 13 14 18 
# 
ARMSMC  0 1 2     7 8 9    11 12 13 14 18 
ARMSSC  0 1 2 3 6 7 8 9    11 12 13 14 18 
# 
CRMSCA  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSMC  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSSC  0 1 2 3 6     9    11 12 13 14 18 
CRMSALL 0 1 2     7 8 9    11 12 13 14 18 
# 
D-E_CA  0 1 2     7 8 9    11 12 13 14 18 
D-E_MC  0 1 2     7 8 9    11 12 13 14 18 
D-E_SC  0 1 2 3 6 7 8 9    11 12 13 14 18 
D-E_ALL 0 1 2     7 8 9    11 12 13 14 18 
# 
# Output parameters 
# 
DIHED-OUTPUT        0         #    1 - ON, 0 - OFF 
RES-CONTACTS        0         #    1 - ON, 0 - OFF 
SS-OUTPUT           1         #    1 - ON, 0 - OFF 
PHI-PSI             0         #    1 - SEPARATELY, 0 - NO  
# 
# Calculation parameters 
# 
SOV-METHOD          1         #    0 - SOV 94,  1 - SOV 
# 
TEMP-FACTOR         30.0      #    Target structure temperature factor cutoff 
ACCESS-CUTOFF       0.20      #    Solvent accessibility cutoff   
ANGLES-CORRECT      30.0      #    target-model  (diff < 30.0)    
DSSP-HELIX          6         #    Secondary Structure subset: helix cutoff  
DSSP-STRAND         3         #    Secondary Structure subset: strand cutoff 
ROTAMERS-LIMIT      30.0      #    target-parent (diff > 30.0) 
ROTATION-MATRIX     0         #    1 - ON, 0 - OFF   
SC-SWAPPING         1         #    1 - ON, 0 - OFF    
SEP-CONTACTS        1         #    Separation interval along the chain 
RESIDUE-CONTACTS    8.0       #    Contact definition between two C-beta atoms 
# 
CRMS-METHOD         1         #    0 - ALL, 1 - CA, 2 - MC+CB, 3 - CA (iter)  
ITER-CUTOFF         2.5       #    DISTANCE cutoff (for CA (iter))  
LCS_GDT             1         #    LCS and GDT calculations (1 - ON, 0 - OFF) 
########################## 
#                        # 
#      ACE results:      # 
#                        # 
########################## 
 
 
 
#          The number of residues in SS section: 116 , MODEL 116 , TARGET 116 
#          The number of residues possible to evaluate: 116 
 
 
 SECONDARY STRUCTURE PREDICTION: 
       NUM    RES   SS   Prediction   Probability 
 SSP     3     A     C     C             1.00 
 SSP     4     L     C     C             1.00 
 SSP     5     T     C     C             1.00 
 SSP     6     Q     C     C             1.00 
 SSP     7     A     C     C             1.00 
 SSP     8     H     C     C             1.00 
 SSP     9     C     C     C             1.00 
 SSP    10     E     C     C             1.00 
 SSP    11     A     C     C             1.00 
 SSP    12     C     C     C             1.00 
 SSP    13     R     C     C             1.00 
 SSP    14     A     C     C             1.00 
 SSP    15     D     C     C             1.00 
 SSP    16     A     C     C             1.00 
 SSP    17     P     C     C             1.00 
 SSP    18     H     C     C             1.00 
 SSP    19     V     C     C             1.00 
 SSP    20     S     C     C             1.00 
 SSP    21     D     C     C             1.00 
 SSP    22     E     C     C             1.00 
 SSP    23     E     C     H             1.00 
 SSP    24     L     H     H             1.00 
 SSP    25     P     H     H             1.00 
 SSP    26     V     H     H             1.00 
 SSP    27     L     H     H             1.00 
 SSP    28     L     H     H             1.00 
 SSP    29     R     C     H             1.00 
 SSP    30     Q     C     H             1.00 
 SSP    31     I     C     C             1.00 
 SSP    32     P     C     C             1.00 
 SSP    33     D     C     C             1.00 
 SSP    34     W     C     C             1.00 
 SSP    35     N     E     E             1.00 
 SSP    36     I     E     C             1.00 
 SSP    37     E     E     C             1.00 
 SSP    38     V     E     C             1.00 
 SSP    39     R     E     C             1.00 
 SSP    40     D     C     C             1.00 
 SSP    41     G     C     C             1.00 
 SSP    42     I     E     C             1.00 
 SSP    43     M     E     C             1.00 
 SSP    44     Q     E     C             1.00 
 SSP    45     L     E     E             1.00 
 SSP    46     E     E     E             1.00 
 SSP    47     K     E     E             1.00 
 SSP    48     V     E     E             1.00 
 SSP    49     Y     E     E             1.00 
 SSP    50     L     E     E             1.00 
 SSP    51     F     E     C             1.00 
 SSP    52     K     C     C             1.00 
 SSP    53     N     C     C             1.00 
 SSP    54     F     H     H             1.00 
 SSP    55     K     H     H             1.00 
 SSP    56     H     H     H             1.00 
 SSP    57     A     H     H             1.00 
 SSP    58     L     H     H             1.00 
 SSP    59     A     H     H             1.00 
 SSP    60     F     H     H             1.00 
 SSP    61     T     H     H             1.00 
 SSP    62     N     H     H             1.00 
 SSP    63     A     H     H             1.00 
 SSP    64     V     H     H             1.00 
 SSP    65     G     H     H             1.00 
 SSP    66     E     H     H             1.00 
 SSP    67     I     H     H             1.00 
 SSP    68     S     H     H             1.00 
 SSP    69     E     H     H             1.00 
 SSP    70     A     H     H             1.00 
 SSP    71     E     H     H             1.00 
 SSP    72     G     C     C             1.00 
 SSP    73     H     C     C             1.00 
 SSP    74     H     C     C             1.00 
 SSP    75     P     C     C             1.00 
 SSP    76     G     E     E             1.00 
 SSP    77     L     E     E             1.00 
 SSP    78     L     E     E             1.00 
 SSP    79     T     E     E             1.00 
 SSP    80     E     E     E             1.00 
 SSP    81     W     C     C             1.00 
 SSP    82     G     C     C             1.00 
 SSP    83     K     E     E             1.00 
 SSP    84     V     E     E             1.00 
 SSP    85     T     E     E             1.00 
 SSP    86     V     E     E             1.00 
 SSP    87     T     E     E             1.00 
 SSP    88     W     E     E             1.00 
 SSP    89     W     C     C             1.00 
 SSP    90     S     E     E             1.00 
 SSP    91     H     C     C             1.00 
 SSP    92     S     C     C             1.00 
 SSP    93     I     C     C             1.00 
 SSP    94     K     C     C             1.00 
 SSP    95     G     E     E             1.00 
 SSP    96     L     C     C             1.00 
 SSP    97     H     C     C             1.00 
 SSP    98     R     H     H             1.00 
 SSP    99     N     H     H             1.00 
 SSP   100     D     H     H             1.00 
 SSP   101     F     H     H             1.00 
 SSP   102     I     H     H             1.00 
 SSP   103     M     H     H             1.00 
 SSP   104     A     H     H             1.00 
 SSP   105     A     H     H             1.00 
 SSP   106     R     H     H             1.00 
 SSP   107     T     H     H             1.00 
 SSP   108     D     H     H             1.00 
 SSP   109     E     H     H             1.00 
 SSP   110     V     H     H             1.00 
 SSP   111     A     H     H             1.00 
 SSP   112     K     H     H             1.00 
 SSP   113     T     C     H             1.00 
 SSP   114     A     C     H             1.00 
 SSP   115     E     C     C             1.00 
 SSP   116     G     C     C             1.00 
 SSP   117     R     E     C             1.00 
 SSP   118     K     C     C             1.00 
 
 NP      - Number of predicted residues 
 PP      - Percent of predicted residues 
 Q3      - Residues predicted correctly (H, E, C) 
 Qhelix  - Residues predicted correctly (HELIX) 
 Qstrand - Residues predicted correctly (STRAND) 
 Qcoil   - Residues predicted correctly (COIL) 
 SOV     - Segment overlap quantity 
 
                     Q3      Qhelix   Qstrand   Qcoil      PP 
 Qindex              87.9     100.0     69.0     89.8    100.0 
 
                     ALL      HELIX    STRAND    COIL      PP 
 SOV observed        91.3      98.4     79.3     93.0    100.0 
 
           Considered    Percent predicted   Percent predicted 
            segments        correctly         as wrong type 
 SEG            7              85.7               0.0 
 
         Number of wrong    Number of wrong 
             breaks             joins 
 B/J            0                 0 
 
  CONFIDENCE (P)     Average     NP    PP/BIN     Q3 
 BIN  0.90 - 1.00      1.00     116    100.0     87.9 
 
 BIN  0.00 - 1.00      1.00     116    100.0     87.9 
 
 
 
 
              predicted        number of target      total number   total number 
                as a         contacts possible in         of             of 
               contact         predicted subset:       contacts       contacts 
            percent  number    percent    number       in target    in prediction 
 CONTACTS:     0.0      0         0.0        0             0              0 
 
 
 
 CONSIDERED - explicitly provided contacts (with positive confidence) or 
              non contacts (with negative confidence) possible to evaluate 
 SEP      - Minimum separation between residues considered 
 NPC      - Number of contacts predicted correctly 
 PC(P)    - Percent of contacts predicted correctly from CONSIDERED in PREDICTION 
 PC(T)    - Percent of contacts predicted correctly from CONSIDERED in TARGET with SEP limit 
 PC(TT)   - Percent of contacts predicted correctly from TOTAL in TARGET with SEP limit 
 
                        CONSIDERED     CONSIDERED       TOTAL          TOTAL 
                      in PREDICTION    in TARGET    in PREDICTION    in TARGET 
 ALL RESIDUES USED         116             116           118            116 
 ALL CONTACTS (< 8.0A)     525             544           531            544 
 
               in PREDICTION      Predicted correctly          Submitted as        in TARGET 
                CONSIDERED     NPC   PC(P)   PC(T)   PC(TT)    NOT  predicted   CONSIDERED  TOTAL  |   SEP 
 RES CONTACTS       525        446   84.95   81.99   81.99       0     0.00         544       544  |   1-9999 
 RES CONTACTS       324        294   90.74   93.93   93.93       0     0.00         313       313  |   1-4    
 RES CONTACTS        41         30   73.17   81.08   81.08       0     0.00          37        37  |   5-8    
 RES CONTACTS       160        122   76.25   62.89   62.89       0     0.00         194       194  |   9-9999 
 
 
 
# WARNING! TARGET 923 atoms, MODEL 939 atoms, 923 common with TARGET 
           Number of atoms possible to evaluate: 923 
 
MEASURES: 
 
 
ANGLES RMS : model <-> target 
 
 (MC: PHI+PSI) DIHED RMS:      ARMSMC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    47.56           77.0   230   100.0   230     ARMSMC  
     SECONDARY STRUCTURE . .    32.88           87.3   118   100.0   118     ARMSMC  
     SURFACE . . . . . . . .    57.00           68.4   136   100.0   136     ARMSMC  
     BURIED  . . . . . . . .    28.90           89.4    94   100.0    94     ARMSMC  
 (SC: CHI1) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    76.45           54.2    96   100.0    96     ARMSSC1 
     RELIABLE SIDE CHAINS  .    79.76           50.0    88   100.0    88     ARMSSC1 
     SECONDARY STRUCTURE . .    70.01           58.0    50   100.0    50     ARMSSC1 
     SURFACE . . . . . . . .    80.14           45.6    57   100.0    57     ARMSSC1 
     BURIED  . . . . . . . .    70.70           66.7    39   100.0    39     ARMSSC1 
 (SC: CHI2) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    87.47           40.0    75   100.0    75     ARMSSC2 
     RELIABLE SIDE CHAINS  .    85.23           42.6    54   100.0    54     ARMSSC2 
     SECONDARY STRUCTURE . .    89.01           47.4    38   100.0    38     ARMSSC2 
     SURFACE . . . . . . . .    91.38           34.0    47   100.0    47     ARMSSC2 
     BURIED  . . . . . . . .    80.47           50.0    28   100.0    28     ARMSSC2 
 (SC: CHI3) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    69.33           41.4    29   100.0    29     ARMSSC3 
     RELIABLE SIDE CHAINS  .    65.98           42.3    26   100.0    26     ARMSSC3 
     SECONDARY STRUCTURE . .    67.11           47.1    17   100.0    17     ARMSSC3 
     SURFACE . . . . . . . .    71.14           39.1    23   100.0    23     ARMSSC3 
     BURIED  . . . . . . . .    61.88           50.0     6   100.0     6     ARMSSC3 
 (SC: CHI4) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    73.72           46.2    13   100.0    13     ARMSSC4 
     RELIABLE SIDE CHAINS  .    73.72           46.2    13   100.0    13     ARMSSC4 
     SECONDARY STRUCTURE . .    75.31           42.9     7   100.0     7     ARMSSC4 
     SURFACE . . . . . . . .    65.17           54.5    11   100.0    11     ARMSSC4 
     BURIED  . . . . . . . .   109.40            0.0     2   100.0     2     ARMSSC4 
 
COORDINATES RMS : model <-> target 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   5.00): 
 FRAGMENT  1    3 - 118  116  Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT   110      9 - 118      4.64     8.02 
  LCS LOCAL_SCORE:             90.77 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   2.00): 
 FRAGMENT  1    3 - 118  116  Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT   100     16 - 115      1.87     8.26 
  LONGEST_CONTINUOUS_SEGMENT   100     17 - 116      1.97     8.26 
  LCS LOCAL_SCORE:             76.25 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   1.00): 
 FRAGMENT  1    3 - 118  116  Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    57     57 - 113      0.99     8.36 
  LONGEST_CONTINUOUS_SEGMENT    57     58 - 114      1.00     8.37 
  LCS LOCAL_SCORE:             33.18 
 
 
 LCS                   LENGTH_OF_THE 
 LCS  RESIDUE  RESIDUE    CONTINUOUS  SECONDARY 
 LCS   NUMBER     NAME       SEGMENT  STRUCTURE   GDT_DATA_COLUMNS (PERCENT OF THE TARGET) 
 LCS       3       A     3    4   19       C        2   2   2   3   3   5   8  13  13  14  15  16  18  18  19  20  22  23  25  25  
 LCS       4       L     3    4   19       C        2   2   2   5   6   8  12  13  13  15  15  16  18  18  19  20  22  23  25  25  
 LCS       5       T     3    6   19       C        2   2   4   5   6   8  12  13  13  15  15  16  18  18  19  20  22  23  25  25  
 LCS       6       Q     5    6   19       C        3   4   4   4   6   8  12  13  13  15  15  16  18  18  19  20  22  23  25  25  
 LCS       7       A     5    6   19       C        3   4   4   4   6   8  12  13  13  15  15  16  18  18  19  20  22  23  25  25  
 LCS       8       H     5    6   19       C        3   4   4   4   6   8  12  13  13  15  15  16  18  18  19  20  22  23  25  25  
 LCS       9       C     5    6  110       C        3   4   4   4   6   8  12  13  13  15  15  16  18  18  19  20  22  23  25  25  
 LCS      10       E     5    6  110       C        3   4   4   4   6   7  12  13  13  15  15  16  18  24  28  33  41  50  67  84  
 LCS      11       A     5    6  110       C        3   3   4   4   6   7  10  13  13  15  17  25  31  45  71  82  88  89  90  91  
 LCS      12       C     5    7  110       C        3   3   4   5   6   8  12  13  18  27  34  59  75  86  87  87  88  90  90  91  
 LCS      13       R     5    7  110       C        2   3   4   5   6   8  12  13  13  17  25  38  67  82  86  88  88  90  90  91  
 LCS      14       A     3    7  110       C        2   2   4   5   6   8  13  15  20  24  28  60  67  70  74  75  79  81  88  89  
 LCS      15       D     4    7  110       C        2   3   4   5   6   7  26  34  38  67  71  74  81  87  87  88  88  90  90  91  
 LCS      16       A     4  100  110       C        6  13  25  43  66  75  80  82  85  86  86  86  86  87  88  88  88  90  90  91  
 LCS      17       P    19  100  110       C        3   3  22  62  74  80  81  82  85  86  86  86  87  87  88  88  88  90  90  91  
 LCS      18       H    19  100  110       C        7  18  67  75  76  80  81  82  85  86  86  86  87  87  88  88  88  90  90  91  
 LCS      19       V    19  100  110       C        3  35  67  75  76  80  81  82  85  86  86  86  87  87  88  88  88  90  90  91  
 LCS      20       S    19  100  110       C        5  31  53  71  76  80  81  82  85  86  86  86  87  87  88  88  88  90  90  91  
 LCS      21       D    19  100  110       C        5  31  67  75  76  80  81  82  85  86  86  86  87  87  88  88  88  90  90  91  
 LCS      22       E    19  100  110       C        5  30  67  75  76  80  81  82  85  86  86  86  87  87  88  88  88  90  90  91  
 LCS      23       E    19  100  110       C        5  12  50  68  76  80  81  82  85  86  86  86  87  87  88  88  88  90  90  91  
 LCS      24       L    19  100  110       H        7  31  67  75  76  80  81  82  85  86  86  86  87  87  88  88  88  90  90  91  
 LCS      25       P    19  100  110       H       17  37  67  75  76  80  81  82  85  86  86  86  87  87  88  88  88  90  90  91  
 LCS      26       V    19  100  110       H       15  35  58  75  76  80  81  82  85  86  86  86  87  87  88  88  88  90  90  91  
 LCS      27       L    19  100  110       H       18  43  67  75  76  80  81  82  85  86  86  86  87  87  88  88  88  90  90  91  
 LCS      28       L    19  100  110       H       17  39  67  75  76  80  81  82  85  86  86  86  87  87  88  88  88  90  90  91  
 LCS      29       R    19  100  110       C       10  37  67  75  76  80  81  82  85  86  86  86  87  87  88  88  88  90  90  91  
 LCS      30       Q    19  100  110       C       13  34  67  75  76  80  81  82  85  86  86  86  87  87  88  88  88  90  90  91  
 LCS      31       I    19  100  110       C       13  43  67  75  76  80  81  82  85  86  86  86  87  87  88  88  88  90  90  91  
 LCS      32       P    19  100  110       C       10  31  67  75  76  80  81  82  85  86  86  86  87  87  88  88  88  90  90  91  
 LCS      33       D    19  100  110       C       19  43  67  75  76  80  81  82  85  86  86  86  87  87  88  88  88  90  90  91  
 LCS      34       W    19  100  110       C       23  43  67  75  76  80  81  82  85  86  86  86  87  87  88  88  88  90  90  91  
 LCS      35       N    19  100  110       E       23  43  67  75  76  80  81  82  85  86  86  86  87  87  88  88  88  90  90  91  
 LCS      36       I     4  100  110       E        2  12  42  63  74  80  81  82  85  86  86  86  87  87  88  88  88  90  90  91  
 LCS      37       E     4  100  110       E        2  10  26  39  68  78  81  82  85  86  86  86  87  87  88  88  88  90  90  91  
 LCS      38       V     4  100  110       E        2   3  27  63  74  80  81  82  85  86  86  86  87  87  88  88  88  90  90  91  
 LCS      39       R     4  100  110       E        2   8  18  25  31  47  73  81  85  86  86  86  87  87  88  88  88  90  90  91  
 LCS      40       D     4  100  110       C        2   6  17  39  65  72  81  82  85  86  86  86  87  87  88  88  88  90  90  91  
 LCS      41       G     4  100  110       C        2   3   3   4   5   8  60  82  85  86  86  86  87  87  88  88  88  90  90  91  
 LCS      42       I    10  100  110       E        1  17  42  63  72  79  81  82  85  86  86  86  87  87  88  88  88  90  90  91  
 LCS      43       M    34  100  110       E        4  17  47  64  74  80  81  82  85  86  86  86  87  87  88  88  88  90  90  91  
 LCS      44       Q    48  100  110       E       19  43  67  75  76  80  81  82  85  86  86  86  87  87  88  88  88  90  90  91  
 LCS      45       L    48  100  110       E       18  43  67  75  76  80  81  82  85  86  86  86  87  87  88  88  88  90  90  91  
 LCS      46       E    48  100  110       E       19  43  67  75  76  80  81  82  85  86  86  86  87  87  88  88  88  90  90  91  
 LCS      47       K    48  100  110       E       23  43  67  75  76  80  81  82  85  86  86  86  87  87  88  88  88  90  90  91  
 LCS      48       V    48  100  110       E       23  43  67  75  76  80  81  82  85  86  86  86  87  87  88  88  88  90  90  91  
 LCS      49       Y    48  100  110       E       23  43  67  75  76  80  81  82  85  86  86  86  87  87  88  88  88  90  90  91  
 LCS      50       L    48  100  110       E       18  43  67  75  76  80  81  82  85  86  86  86  87  87  88  88  88  90  90  91  
 LCS      51       F    48  100  110       E       13  42  67  75  76  80  81  82  85  86  86  86  87  87  88  88  88  90  90  91  
 LCS      52       K    48  100  110       C       13  37  67  75  76  80  81  82  85  86  86  86  87  87  88  88  88  90  90  91  
 LCS      53       N    48  100  110       C       13  37  62  75  76  80  81  82  85  86  86  86  87  87  88  88  88  90  90  91  
 LCS      54       F    48  100  110       H       13  35  62  75  76  80  81  82  85  86  86  86  87  87  88  88  88  90  90  91  
 LCS      55       K    48  100  110       H       17  35  61  75  76  80  81  82  85  86  86  86  87  87  88  88  88  90  90  91  
 LCS      56       H    54  100  110       H       14  37  67  75  76  80  81  82  85  86  86  86  87  87  88  88  88  90  90  91  
 LCS      57       A    57  100  110       H       17  37  67  75  76  80  81  82  85  86  86  86  87  87  88  88  88  90  90  91  
 LCS      58       L    57  100  110       H       17  37  67  75  76  80  81  82  85  86  86  86  87  87  88  88  88  90  90  91  
 LCS      59       A    57  100  110       H       17  37  67  75  76  80  81  82  85  86  86  86  87  87  88  88  88  90  90  91  
 LCS      60       F    57  100  110       H       17  40  67  75  76  80  81  82  85  86  86  86  87  87  88  88  88  90  90  91  
 LCS      61       T    57  100  110       H       17  38  67  75  76  80  81  82  85  86  86  86  87  87  88  88  88  90  90  91  
 LCS      62       N    57  100  110       H       17  38  67  75  76  80  81  82  85  86  86  86  87  87  88  88  88  90  90  91  
 LCS      63       A    57  100  110       H       17  37  67  75  76  80  81  82  85  86  86  86  87  87  88  88  88  90  90  91  
 LCS      64       V    57  100  110       H       17  42  67  75  76  80  81  82  85  86  86  86  87  87  88  88  88  90  90  91  
 LCS      65       G    57  100  110       H       17  43  67  75  76  80  81  82  85  86  86  86  87  87  88  88  88  90  90  91  
 LCS      66       E    57  100  110       H       17  42  67  75  76  80  81  82  85  86  86  86  87  87  88  88  88  90  90  91  
 LCS      67       I    57  100  110       H       17  43  67  75  76  80  81  82  85  86  86  86  87  87  88  88  88  90  90  91  
 LCS      68       S    57  100  110       H       18  43  67  75  76  80  81  82  85  86  86  86  87  87  88  88  88  90  90  91  
 LCS      69       E    57  100  110       H       18  43  67  75  76  80  81  82  85  86  86  86  87  87  88  88  88  90  90  91  
 LCS      70       A    57  100  110       H       17  41  67  75  76  80  81  82  85  86  86  86  87  87  88  88  88  90  90  91  
 LCS      71       E    57  100  110       H       18  43  67  75  76  80  81  82  85  86  86  86  87  87  88  88  88  90  90  91  
 LCS      72       G    57  100  110       C       18  43  67  75  76  80  81  82  85  86  86  86  87  87  88  88  88  90  90  91  
 LCS      73       H    57  100  110       C       19  43  67  75  76  80  81  82  85  86  86  86  87  87  88  88  88  90  90  91  
 LCS      74       H    57  100  110       C       20  43  67  75  76  80  81  82  85  86  86  86  87  87  88  88  88  90  90  91  
 LCS      75       P    57  100  110       C       22  43  67  75  76  80  81  82  85  86  86  86  87  87  88  88  88  90  90  91  
 LCS      76       G    57  100  110       E       19  43  67  75  76  80  81  82  85  86  86  86  87  87  88  88  88  90  90  91  
 LCS      77       L    57  100  110       E       11  40  56  75  76  80  81  82  85  86  86  86  87  87  88  88  88  90  90  91  
 LCS      78       L    57  100  110       E       21  43  67  75  76  80  81  82  85  86  86  86  87  87  88  88  88  90  90  91  
 LCS      79       T    57  100  110       E       21  43  65  75  76  80  81  82  85  86  86  86  87  87  88  88  88  90  90  91  
 LCS      80       E    57  100  110       E       23  43  67  75  76  80  81  82  85  86  86  86  87  87  88  88  88  90  90  91  
 LCS      81       W    57  100  110       C        8  34  67  75  76  80  81  82  85  86  86  86  87  87  88  88  88  90  90  91  
 LCS      82       G    57  100  110       C        7  29  67  75  76  80  81  82  85  86  86  86  87  87  88  88  88  90  90  91  
 LCS      83       K    57  100  110       E       23  43  67  75  76  80  81  82  85  86  86  86  87  87  88  88  88  90  90  91  
 LCS      84       V    57  100  110       E       23  43  67  75  76  80  81  82  85  86  86  86  87  87  88  88  88  90  90  91  
 LCS      85       T    57  100  110       E       23  43  67  75  76  80  81  82  85  86  86  86  87  87  88  88  88  90  90  91  
 LCS      86       V    57  100  110       E       19  43  67  75  76  80  81  82  85  86  86  86  87  87  88  88  88  90  90  91  
 LCS      87       T    57  100  110       E       19  43  67  75  76  80  81  82  85  86  86  86  87  87  88  88  88  90  90  91  
 LCS      88       W    57  100  110       E       19  43  67  75  76  80  81  82  85  86  86  86  87  87  88  88  88  90  90  91  
 LCS      89       W    57  100  110       C       21  43  67  75  76  80  81  82  85  86  86  86  87  87  88  88  88  90  90  91  
 LCS      90       S    57  100  110       E       23  43  67  75  76  80  81  82  85  86  86  86  87  87  88  88  88  90  90  91  
 LCS      91       H    57  100  110       C       23  43  67  75  76  80  81  82  85  86  86  86  87  87  88  88  88  90  90  91  
 LCS      92       S    57  100  110       C       14  43  64  75  76  80  81  82  85  86  86  86  87  87  88  88  88  90  90  91  
 LCS      93       I    57  100  110       C       23  43  64  75  76  80  81  82  85  86  86  86  87  87  88  88  88  90  90  91  
 LCS      94       K    57  100  110       C       23  43  67  75  76  80  81  82  85  86  86  86  87  87  88  88  88  90  90  91  
 LCS      95       G    57  100  110       E       23  43  67  75  76  80  81  82  85  86  86  86  87  87  88  88  88  90  90  91  
 LCS      96       L    57  100  110       C       23  43  67  75  76  80  81  82  85  86  86  86  87  87  88  88  88  90  90  91  
 LCS      97       H    57  100  110       C       23  43  67  75  76  80  81  82  85  86  86  86  87  87  88  88  88  90  90  91  
 LCS      98       R    57  100  110       H       20  43  67  75  76  80  81  82  85  86  86  86  87  87  88  88  88  90  90  91  
 LCS      99       N    57  100  110       H       20  43  67  75  76  80  81  82  85  86  86  86  87  87  88  88  88  90  90  91  
 LCS     100       D    57  100  110       H       23  43  67  75  76  80  81  82  85  86  86  86  87  87  88  88  88  90  90  91  
 LCS     101       F    57  100  110       H       23  43  67  75  76  80  81  82  85  86  86  86  87  87  88  88  88  90  90  91  
 LCS     102       I    57  100  110       H       23  43  67  75  76  80  81  82  85  86  86  86  87  87  88  88  88  90  90  91  
 LCS     103       M    57  100  110       H       23  43  67  75  76  80  81  82  85  86  86  86  87  87  88  88  88  90  90  91  
 LCS     104       A    57  100  110       H       23  43  67  75  76  80  81  82  85  86  86  86  87  87  88  88  88  90  90  91  
 LCS     105       A    57  100  110       H       19  43  67  75  76  80  81  82  85  86  86  86  87  87  88  88  88  90  90  91  
 LCS     106       R    57  100  110       H       23  43  67  75  76  80  81  82  85  86  86  86  87  87  88  88  88  90  90  91  
 LCS     107       T    57  100  110       H       23  43  67  75  76  80  81  82  85  86  86  86  87  87  88  88  88  90  90  91  
 LCS     108       D    57  100  110       H       18  43  67  75  76  80  81  82  85  86  86  86  87  87  88  88  88  90  90  91  
 LCS     109       E    57  100  110       H       23  43  67  75  76  80  81  82  85  86  86  86  87  87  88  88  88  90  90  91  
 LCS     110       V    57  100  110       H       23  43  67  75  76  80  81  82  85  86  86  86  87  87  88  88  88  90  90  91  
 LCS     111       A    57  100  110       H       23  43  67  75  76  80  81  82  85  86  86  86  87  87  88  88  88  90  90  91  
 LCS     112       K    57  100  110       H       21  43  67  75  76  80  81  82  85  86  86  86  87  87  88  88  88  90  90  91  
 LCS     113       T    57  100  110       C       23  43  67  75  76  80  81  82  85  86  86  86  87  87  88  88  88  90  90  91  
 LCS     114       A    57  100  110       C        8  43  56  75  76  80  81  82  85  86  86  86  87  87  88  88  88  90  90  91  
 LCS     115       E    31  100  110       C        2   2   2  18  28  62  75  81  84  86  86  86  87  87  88  88  88  90  90  91  
 LCS     116       G     3  100  110       C        2   2   2   3   6   6   6  17  50  59  80  85  87  87  88  88  88  90  90  91  
 LCS     117       R     3   77  110       E        2   2   6  10  12  22  27  44  64  74  81  85  87  87  88  88  88  90  90  91  
 LCS     118       K     3    5  110       C        2   2   2   3   3   5   6  13  14  21  70  84  87  87  88  88  88  88  89  91  
 LCS TOTAL_SCORE (RMS CUTOFF   1.00):  33.18 
 
 NUMBER_OF_CA_Tg:  116      NUMBER_OF_CA_Pr:  116      PERCENT_OF_CA: 100.00  
 
GLOBAL_DISTANCE_TEST (the largest set of residues under DISTANCE_CUTOFF (using LCS results)): 
 GDT DISTANCE_CUTOFF     0.50    1.00    1.50    2.00    2.50    3.00    3.50    4.00    4.50    5.00    5.50    6.00    6.50    7.00    7.50    8.00    8.50    9.00    9.50   10.00  
 GDT NUMBER_OF_CA_max      27      51      78      87      89      93      95      96      99     100     100     100     101     102     103     103     103     105     105     106  
 GDT PERCENT_OF_CA_Pr   23.28   43.97   67.24   75.00   76.72   80.17   81.90   82.76   85.34   86.21   86.21   86.21   87.07   87.93   88.79   88.79   88.79   90.52   90.52   91.38 
 GDT PERCENT_OF_CA_Tg   23.28   43.97   67.24   75.00   76.72   80.17   81.90   82.76   85.34   86.21   86.21   86.21   87.07   87.93   88.79   88.79   88.79   90.52   90.52   91.38 
 GDT FRAGMENT: Beg-End  34-113  33-113  18-113  18-114  18-114  17-114  17-114  17-114  16-114  16-115  16-115  16-115  17-117  16-117  16-118  16-118  16-118  12-117  12-117  12-118 
 GDT RMS_LOCAL           0.41    0.61    1.04    1.14    1.18    1.36    1.46    1.56    1.80    1.87    1.87    1.87    2.13    2.19    2.38    2.38    2.38    3.01    3.01    3.15 
 GDT RMS_ALL_CA          8.53    8.49    8.25    8.25    8.24    8.26    8.27    8.27    8.27    8.26    8.26    8.26    8.26    8.25    8.25    8.25    8.25    8.19    8.19    8.19 
 
 
 TEST (CA)  RMS =   7.75               (Number of atoms:  116) 
 
 (CA)  RMS:                   CRMSCA         NP     PP     TN 
     ALL . . . . . . . . . .    7.75        116   100.0   116     CRMSCA  
     CRN = ALL/NP  . . . . .    0.0668                            CRMSCA  
     SECONDARY STRUCTURE . .    3.05         59   100.0    59     CRMSCA  
     SURFACE . . . . . . . .    9.24         69   100.0    69     CRMSCA  
     BURIED  . . . . . . . .    4.80         47   100.0    47     CRMSCA  
 (MC)  RMS:                   CRMSMC         NP     PP     TN 
     ALL . . . . . . . . . .    7.80        573   100.0   573     CRMSMC  
     SECONDARY STRUCTURE . .    3.12        293   100.0   293     CRMSMC  
     SURFACE . . . . . . . .    9.26        341   100.0   341     CRMSMC  
     BURIED  . . . . . . . .    4.90        232   100.0   232     CRMSMC  
 (SC)  RMS:                   CRMSSC         NP     PP     TN 
     ALL . . . . . . . . . .    8.03        459   100.0   459     CRMSSC  
     RELIABLE SIDE CHAINS  .    7.71        381   100.0   381     CRMSSC  
     SECONDARY STRUCTURE . .    4.38        239   100.0   239     CRMSSC  
     SURFACE . . . . . . . .    9.52        270   100.0   270     CRMSSC  
     BURIED  . . . . . . . .    5.23        189   100.0   189     CRMSSC  
 (ALL) RMS:                   CRMSALL        NP     PP     TN 
     ALL . . . . . . . . . .    7.87        923   100.0   923     CRMSALL 
     SECONDARY STRUCTURE . .    3.79        475   100.0   475     CRMSALL 
     SURFACE . . . . . . . .    9.33        546   100.0   546     CRMSALL 
     BURIED  . . . . . . . .    5.08        377   100.0   377     CRMSALL 
 
Accuracy of estimates of atomic coordinate errors: model <-> target 
 
 (CA)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    4.992      1.000       0.500    116   100.0   116     ERRCA  
     SECONDARY STRUCTURE . .    2.681      1.000       0.500     59   100.0    59     ERRCA  
     SURFACE . . . . . . . .    6.211      1.000       0.500     69   100.0    69     ERRCA  
     BURIED  . . . . . . . .    3.201      1.000       0.500     47   100.0    47     ERRCA  
 (MC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    5.031      1.000       0.500    573   100.0   573     ERRMC  
     SECONDARY STRUCTURE . .    2.733      1.000       0.500    293   100.0   293     ERRMC  
     SURFACE . . . . . . . .    6.241      1.000       0.500    341   100.0   341     ERRMC  
     BURIED  . . . . . . . .    3.253      1.000       0.500    232   100.0   232     ERRMC  
 (SC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    5.444      1.000       0.500    459   100.0   459     ERRSC  
     RELIABLE SIDE CHAINS  .    5.376      1.000       0.500    381   100.0   381     ERRSC  
     SECONDARY STRUCTURE . .    3.572      1.000       0.500    239   100.0   239     ERRSC  
     SURFACE . . . . . . . .    6.660      1.000       0.500    270   100.0   270     ERRSC  
     BURIED  . . . . . . . .    3.706      1.000       0.500    189   100.0   189     ERRSC  
 (ALL) ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    5.209      1.000       0.500    923   100.0   923     ERRALL 
     SECONDARY STRUCTURE . .    3.143      1.000       0.500    475   100.0   475     ERRALL 
     SURFACE . . . . . . . .    6.396      1.000       0.500    546   100.0   546     ERRALL 
     BURIED  . . . . . . . .    3.490      1.000       0.500    377   100.0   377     ERRALL 
 
 
 
DISTANCES: Percent of total atoms where distance (target <-> model) in global 
           superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms 
            D < 1     D < 2     D < 3     D < 5    D < 10      NP      TN 
CA  (N)        11        32        49        91       102     116     116   DISTCA 
CA  (P)      9.48     27.59     42.24     78.45     87.93             116   DISTCA 
CA  (RMS)    0.78      1.35      1.82      2.96      3.46                   DISTCA 
 
ALL (N)        67       225       377       680       809     923     923   DISTALL 
ALL (P)      7.26     24.38     40.85     73.67     87.65             923   DISTALL 
ALL (RMS)    0.77      1.37      1.93      2.97      3.81                   DISTALL 
 
 
 
 
END of the results output 
