 
####################################################### 
#                                                     # 
#                        ACE                          # 
#                                                     # 
#        Ab-initio protein structure prediction       # 
#                         &                           # 
#               Comparative modeling                  # 
#                                                     # 
#                     Evaluator                       # 
#                                                     # 
#                ----------------- 11/1998            # 
#                                                     # 
#                         by                          # 
#           Adam Zemla & Ceslovas Venclovas           # 
#                                                     # 
#         Protein Structure Prediction Center         # 
#      Lawrence Livermore National Laboratory, CA     # 
#                                                     # 
####################################################### 
########################## 
#                        # 
#    ACE parameters:     # 
#                        # 
########################## 
# 
# MEASURES: 
# 
# For AB: 0 3 9 13 14 
# For CM: 0 1 2 3 6 7 8 9 10 11 12 13 14 18 
# 
ARMSMC  0 1 2     7 8 9    11 12 13 14 18 
ARMSSC  0 1 2 3 6 7 8 9    11 12 13 14 18 
# 
CRMSCA  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSMC  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSSC  0 1 2 3 6     9    11 12 13 14 18 
CRMSALL 0 1 2     7 8 9    11 12 13 14 18 
# 
D-E_CA  0 1 2     7 8 9    11 12 13 14 18 
D-E_MC  0 1 2     7 8 9    11 12 13 14 18 
D-E_SC  0 1 2 3 6 7 8 9    11 12 13 14 18 
D-E_ALL 0 1 2     7 8 9    11 12 13 14 18 
# 
# Output parameters 
# 
DIHED-OUTPUT        0         #    1 - ON, 0 - OFF 
RES-CONTACTS        0         #    1 - ON, 0 - OFF 
SS-OUTPUT           1         #    1 - ON, 0 - OFF 
PHI-PSI             0         #    1 - SEPARATELY, 0 - NO  
# 
# Calculation parameters 
# 
SOV-METHOD          1         #    0 - SOV 94,  1 - SOV 
# 
TEMP-FACTOR         30.0      #    Target structure temperature factor cutoff 
ACCESS-CUTOFF       0.20      #    Solvent accessibility cutoff   
ANGLES-CORRECT      30.0      #    target-model  (diff < 30.0)    
DSSP-HELIX          6         #    Secondary Structure subset: helix cutoff  
DSSP-STRAND         3         #    Secondary Structure subset: strand cutoff 
ROTAMERS-LIMIT      30.0      #    target-parent (diff > 30.0) 
ROTATION-MATRIX     0         #    1 - ON, 0 - OFF   
SC-SWAPPING         1         #    1 - ON, 0 - OFF    
SEP-CONTACTS        1         #    Separation interval along the chain 
RESIDUE-CONTACTS    8.0       #    Contact definition between two C-beta atoms 
# 
CRMS-METHOD         1         #    0 - ALL, 1 - CA, 2 - MC+CB, 3 - CA (iter)  
ITER-CUTOFF         2.5       #    DISTANCE cutoff (for CA (iter))  
LCS_GDT             1         #    LCS and GDT calculations (1 - ON, 0 - OFF) 
########################## 
#                        # 
#      ACE results:      # 
#                        # 
########################## 
 
 
 
# WARNING! The number of residues in SS section: 108 , MODEL 108 , TARGET 335 
#          The number of residues possible to evaluate: 108 
 
 
 SECONDARY STRUCTURE PREDICTION: 
       NUM    RES   SS   Prediction   Probability 
 SSP     5     M     C     C             1.00 
 SSP     6     I     E     C             1.00 
 SSP     7     A     E     H             1.00 
 SSP     8     L     E     H             1.00 
 SSP     9     D     E     H             1.00 
 SSP    10     G     C     H             1.00 
 SSP    11     A     C     C             1.00 
 SSP    12     Q     C     C             1.00 
 SSP    13     G     C     C             1.00 
 SSP    14     E     C     C             1.00 
 SSP    15     G     C     C             1.00 
 SSP    16     G     C     C             1.00 
 SSP    17     G     H     H             1.00 
 SSP    18     Q     H     H             1.00 
 SSP    19     I     H     H             1.00 
 SSP    20     L     H     H             1.00 
 SSP    21     R     H     H             1.00 
 SSP    22     S     H     H             1.00 
 SSP    23     A     H     H             1.00 
 SSP    24     L     H     H             1.00 
 SSP    25     S     H     H             1.00 
 SSP    26     L     H     H             1.00 
 SSP    27     S     H     C             1.00 
 SSP    28     M     H     C             1.00 
 SSP    29     I     H     C             1.00 
 SSP    30     T     H     E             1.00 
 SSP    31     G     C     C             1.00 
 SSP    32     Q     C     C             1.00 
 SSP    33     P     C     E             1.00 
 SSP    34     F     E     C             1.00 
 SSP    35     T     E     C             1.00 
 SSP    36     I     E     E             1.00 
 SSP    37     T     E     E             1.00 
 SSP    38     S     C     E             1.00 
 SSP    39     I     C     E             1.00 
 SSP    40     R     C     E             1.00 
 SSP    41     A     C     E             1.00 
 SSP    42     G     C     C             1.00 
 SSP    43     R     C     C             1.00 
 SSP    44     A     C     C             1.00 
 SSP    45     K     C     C             1.00 
 SSP    46     P     C     C             1.00 
 SSP    47     G     C     C             1.00 
 SSP    48     L     C     C             1.00 
 SSP    49     L     C     C             1.00 
 SSP    50     R     H     C             1.00 
 SSP    51     Q     H     H             1.00 
 SSP    52     H     H     H             1.00 
 SSP    53     L     H     H             1.00 
 SSP    54     T     H     H             1.00 
 SSP    55     A     H     C             1.00 
 SSP  BREAK 
 SSP    68     E     E     C             1.00 
 SSP    69     G     C     C             1.00 
 SSP    70     A     C     E             1.00 
 SSP    71     E     C     C             1.00 
 SSP    72     L     C     C             1.00 
 SSP    73     G     C     C             1.00 
 SSP    74     S     C     C             1.00 
 SSP    75     Q     C     C             1.00 
 SSP    76     R     C     C             1.00 
 SSP    77     L     E     C             1.00 
 SSP    78     L     E     C             1.00 
 SSP    79     F     E     E             1.00 
 SSP    80     R     E     C             1.00 
 SSP    81     P     C     C             1.00 
 SSP  BREAK 
 SSP    87     G     C     C             1.00 
 SSP    88     D     E     C             1.00 
 SSP    89     Y     E     E             1.00 
 SSP    90     R     E     E             1.00 
 SSP    91     F     E     E             1.00 
 SSP    92     A     E     E             1.00 
 SSP    93     I     E     E             1.00 
 SSP    94     G     E     E             1.00 
 SSP    95     S     E     E             1.00 
 SSP    96     A     E     C             1.00 
 SSP    97     G     E     C             1.00 
 SSP    98     S     E     E             1.00 
 SSP    99     C     H     E             1.00 
 SSP   100     T     H     E             1.00 
 SSP   101     L     H     E             1.00 
 SSP   102     V     H     E             1.00 
 SSP   103     L     H     E             1.00 
 SSP   104     Q     H     E             1.00 
 SSP   105     T     H     C             1.00 
 SSP   106     V     H     C             1.00 
 SSP   107     L     H     C             1.00 
 SSP   108     P     H     C             1.00 
 SSP   109     A     H     C             1.00 
 SSP   110     L     H     E             1.00 
 SSP   111     W     C     E             1.00 
 SSP   112     F     C     E             1.00 
 SSP   113     A     C     C             1.00 
 SSP   114     D     C     C             1.00 
 SSP   115     G     C     C             1.00 
 SSP   116     P     C     C             1.00 
 SSP   117     S     E     C             1.00 
 SSP   118     R     E     C             1.00 
 SSP   119     V     E     C             1.00 
 SSP   120     E     E     E             1.00 
 SSP   121     V     E     E             1.00 
 SSP   122     S     E     E             1.00 
 SSP   123     G     E     E             1.00 
 SSP   124     G     E     C             1.00 
 SSP   125     T     C     C             1.00 
 SSP   126     D     E     C             1.00 
 SSP   127     N     C     C             1.00 
 SSP   128     P     C     C             1.00 
 SSP   129     S     C     C             1.00 
 SSP  BREAK 
 
 NP      - Number of predicted residues 
 PP      - Percent of predicted residues 
 Q3      - Residues predicted correctly (H, E, C) 
 Qhelix  - Residues predicted correctly (HELIX) 
 Qstrand - Residues predicted correctly (STRAND) 
 Qcoil   - Residues predicted correctly (COIL) 
 SOV     - Segment overlap quantity 
 
                     Q3      Qhelix   Qstrand   Qcoil      PP 
 Qindex              58.3      43.8     45.5     79.1     32.2 
 
                     ALL      HELIX    STRAND    COIL      PP 
 SOV observed        62.6      62.5     46.1     76.8     32.2 
 
           Considered    Percent predicted   Percent predicted 
            segments        correctly         as wrong type 
 SEG            9              55.6              22.2 
 
         Number of wrong    Number of wrong 
             breaks             joins 
 B/J            0                 0 
 
  CONFIDENCE (P)     Average     NP    PP/BIN     Q3 
 BIN  0.90 - 1.00      1.00     108    100.0     58.3 
 
 BIN  0.00 - 1.00      1.00     108    100.0     58.3 
 
 
 
 
              predicted        number of target      total number   total number 
                as a         contacts possible in         of             of 
               contact         predicted subset:       contacts       contacts 
            percent  number    percent    number       in target    in prediction 
 CONTACTS:     0.0      0         0.0        0             0              0 
 
 
 
 CONSIDERED - explicitly provided contacts (with positive confidence) or 
              non contacts (with negative confidence) possible to evaluate 
 SEP      - Minimum separation between residues considered 
 NPC      - Number of contacts predicted correctly 
 PC(P)    - Percent of contacts predicted correctly from CONSIDERED in PREDICTION 
 PC(T)    - Percent of contacts predicted correctly from CONSIDERED in TARGET with SEP limit 
 PC(TT)   - Percent of contacts predicted correctly from TOTAL in TARGET with SEP limit 
 
                        CONSIDERED     CONSIDERED       TOTAL          TOTAL 
                      in PREDICTION    in TARGET    in PREDICTION    in TARGET 
 ALL RESIDUES USED         108             108           111            335 
 ALL CONTACTS (< 8.0A)     466             501           480           1826 
 
               in PREDICTION      Predicted correctly          Submitted as        in TARGET 
                CONSIDERED     NPC   PC(P)   PC(T)   PC(TT)    NOT  predicted   CONSIDERED  TOTAL  |   SEP 
 RES CONTACTS       466        227   48.71   45.31   12.43       0     0.00         501      1826  |   1-9999 
 RES CONTACTS       247        214   86.64   77.26   24.15       0     0.00         277       886  |   1-4    
 RES CONTACTS        41          5   12.20   18.52    5.75       0     0.00          27        87  |   5-8    
 RES CONTACTS       178          8    4.49    4.06    0.94       0     0.00         197       853  |   9-9999 
 
 
 
# WARNING! TARGET 2492 atoms, MODEL 2617 atoms, 2492 common with TARGET 
           Number of atoms possible to evaluate: 787 
 
MEASURES: 
 
 
ANGLES RMS : model <-> target 
 
 (MC: PHI+PSI) DIHED RMS:      ARMSMC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    87.75           38.1   210    31.4   668     ARMSMC  
     SECONDARY STRUCTURE . .    81.59           47.6   126    31.2   404     ARMSMC  
     SURFACE . . . . . . . .    94.27           29.3    92    28.8   320     ARMSMC  
     BURIED  . . . . . . . .    82.30           44.9   118    33.9   348     ARMSMC  
 (SC: CHI1) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    82.39           35.8    81    30.9   262     ARMSSC1 
     RELIABLE SIDE CHAINS  .    80.35           36.4    77    33.6   229     ARMSSC1 
     SECONDARY STRUCTURE . .    82.17           39.6    53    31.0   171     ARMSSC1 
     SURFACE . . . . . . . .    92.92           25.7    35    28.5   123     ARMSSC1 
     BURIED  . . . . . . . .    73.37           43.5    46    33.1   139     ARMSSC1 
 (SC: CHI2) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    58.35           47.5    59    32.2   183     ARMSSC2 
     RELIABLE SIDE CHAINS  .    56.18           51.2    43    33.1   130     ARMSSC2 
     SECONDARY STRUCTURE . .    59.25           54.3    35    30.7   114     ARMSSC2 
     SURFACE . . . . . . . .    50.22           48.1    27    28.7    94     ARMSSC2 
     BURIED  . . . . . . . .    64.41           46.9    32    36.0    89     ARMSSC2 
 (SC: CHI3) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .   103.48           19.0    21    30.0    70     ARMSSC3 
     RELIABLE SIDE CHAINS  .   102.79           26.7    15    26.8    56     ARMSSC3 
     SECONDARY STRUCTURE . .   115.03           27.3    11    23.4    47     ARMSSC3 
     SURFACE . . . . . . . .    91.90           18.8    16    30.8    52     ARMSSC3 
     BURIED  . . . . . . . .   133.97           20.0     5    27.8    18     ARMSSC3 
 (SC: CHI4) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    86.73           33.3     9    32.1    28     ARMSSC4 
     RELIABLE SIDE CHAINS  .    86.73           33.3     9    32.1    28     ARMSSC4 
     SECONDARY STRUCTURE . .    88.25           20.0     5    29.4    17     ARMSSC4 
     SURFACE . . . . . . . .    80.41           42.9     7    29.2    24     ARMSSC4 
     BURIED  . . . . . . . .   105.94            0.0     2    50.0     4     ARMSSC4 
 
COORDINATES RMS : model <-> target 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   5.00): 
 FRAGMENT  1    5 - 55   51   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    33      6 - 38       4.99    15.32 
  LONGEST_CONTINUOUS_SEGMENT    33      7 - 39       4.99    15.06 
  LCS LOCAL_SCORE:             56.06 
 
 FRAGMENT  2   68 - 81   14   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    12     70 - 81       4.75     6.25 
  LCS LOCAL_SCORE:             84.69 
 
 FRAGMENT  3   87 - 129  43   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    18     87 - 104      4.75    17.72 
  LCS LOCAL_SCORE:             39.26 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   2.00): 
 FRAGMENT  1    5 - 55   51   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    14     15 - 28       1.08    16.32 
  LONGEST_CONTINUOUS_SEGMENT    14     16 - 29       1.81    16.32 
  LCS LOCAL_SCORE:             16.34 
 
 FRAGMENT  2   68 - 81   14   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     8     74 - 81       1.51     7.62 
  LCS LOCAL_SCORE:             51.02 
 
 FRAGMENT  3   87 - 129  43   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    10     87 - 96       1.95    13.67 
  LCS LOCAL_SCORE:             15.68 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   1.00): 
 FRAGMENT  1    5 - 55   51   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    13     16 - 28       0.61    16.40 
  LCS LOCAL_SCORE:             13.53 
 
 FRAGMENT  2   68 - 81   14   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     6     76 - 81       0.96     8.48 
  LCS LOCAL_SCORE:             31.63 
 
 FRAGMENT  3   87 - 129  43   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     6     90 - 95       0.87    17.17 
  LCS LOCAL_SCORE:              9.52 
 
 
 LCS                   LENGTH_OF_THE 
 LCS  RESIDUE  RESIDUE    CONTINUOUS  SECONDARY 
 LCS   NUMBER     NAME       SEGMENT  STRUCTURE   GDT_DATA_COLUMNS (PERCENT OF THE TARGET) 
 LCS       5       M     3    3   29       C        0   0   0   2   4   4   5   5   5   7   7   8   9  10  10  11  11  11  11  11  
 LCS       6       I     3    3   33       E        0   0   0   1   1   2   4   5   5   7   7   8   9  10  10  11  11  11  11  11  
 LCS       7       A     3    3   33       E        0   0   0   2   3   4   5   5   6   7   7   8   9  10  10  11  11  11  11  11  
 LCS       8       L     3    6   33       E        0   0   1   1   2   2   4   5   6   7   7   8   9  10  10  11  11  11  11  11  
 LCS       9       D     5    6   33       E        0   1   1   2   3   3   4   5   6   6   7   8   9  10  10  11  11  11  11  11  
 LCS      10       G     5    6   33       C        0   1   1   2   2   3   4   5   6   6   7   8   9  10  10  11  11  11  11  11  
 LCS      11       A     5    6   33       C        0   1   1   2   3   3   4   5   6   6   7   8   9  10  10  11  11  11  11  11  
 LCS      12       Q     5    6   33       C        0   1   1   1   2   3   5   5   6   7   7   8   9  10  10  11  11  11  11  11  
 LCS      13       G     5    6   33       C        0   1   1   2   2   3   5   5   6   7   7   8   9  10  10  11  11  11  11  11  
 LCS      14       E     4    6   33       C        0   1   1   1   1   2   3   5   6   7   7   8   9  10  10  11  11  11  11  11  
 LCS      15       G     9   14   33       C        0   1   2   4   4   4   5   5   6   7   7   8   9  10  10  11  11  11  11  11  
 LCS      16       G    13   14   33       C        1   3   3   4   4   4   5   5   6   7   7   8   9  10  10  11  11  11  11  11  
 LCS      17       G    13   14   33       H        3   3   3   4   4   4   5   5   6   7   7   8   9  10  10  11  11  11  11  11  
 LCS      18       Q    13   14   33       H        3   3   3   4   4   4   5   5   6   7   7   8   9  10  10  11  11  11  11  11  
 LCS      19       I    13   14   33       H        3   3   3   4   4   4   5   5   6   7   7   8   9  10  10  11  11  11  11  11  
 LCS      20       L    13   14   33       H        3   3   3   4   4   4   5   5   6   7   7   8   9  10  10  11  11  11  11  11  
 LCS      21       R    13   14   33       H        2   3   3   4   4   4   5   5   6   7   7   8   9  10  10  11  11  11  11  11  
 LCS      22       S    13   14   33       H        3   3   3   4   4   4   5   5   6   7   7   8   9  10  10  11  11  11  11  11  
 LCS      23       A    13   14   33       H        3   3   3   4   4   4   5   5   6   7   7   8   9  10  10  11  11  11  11  11  
 LCS      24       L    13   14   33       H        3   3   3   4   4   4   5   5   6   7   7   8   9  10  10  11  11  11  11  11  
 LCS      25       S    13   14   33       H        3   3   3   4   4   4   5   5   6   7   7   8   9  10  10  11  11  11  11  11  
 LCS      26       L    13   14   33       H        3   3   3   4   4   4   5   5   6   7   7   8   9  10  10  11  11  11  11  11  
 LCS      27       S    13   14   33       H        3   3   3   4   4   4   5   5   5   7   7   8   9  10  10  11  11  11  11  11  
 LCS      28       M    13   14   33       H        3   3   3   4   4   4   5   5   5   7   7   8   8  10  10  11  11  11  11  11  
 LCS      29       I     4   14   33       H        0   1   1   1   2   2   2   3   4   5   5   7   7   8   9  10  11  11  11  11  
 LCS      30       T     4    4   33       H        0   1   1   1   2   2   3   4   5   6   7   8   9  10  10  11  11  11  11  11  
 LCS      31       G     5    6   33       C        0   1   2   2   2   3   5   5   6   6   7   8   9  10  10  11  11  11  11  11  
 LCS      32       Q     5    6   33       C        0   1   2   2   3   3   5   5   6   6   7   8   9  10  10  11  11  11  11  11  
 LCS      33       P     5    6   33       C        0   1   2   2   3   3   5   5   6   6   7   8   9  10  10  11  11  11  11  11  
 LCS      34       F     5    6   33       E        0   1   2   2   3   3   5   5   6   6   7   8   9  10  10  11  11  11  11  11  
 LCS      35       T     5    6   33       E        0   1   2   2   2   3   5   5   6   6   7   8   9   9  10  11  11  11  11  11  
 LCS      36       I     4    6   33       E        0   1   2   2   2   3   5   5   6   6   7   8   9  10  10  11  11  11  11  11  
 LCS      37       T     4    6   33       E        0   1   1   1   2   3   5   5   6   7   7   8   9  10  10  11  11  11  11  11  
 LCS      38       S     4    6   33       C        0   1   1   1   2   4   5   5   6   7   7   8   9  10  10  11  11  11  11  11  
 LCS      39       I     4    6   33       C        0   1   1   2   3   3   4   5   6   7   7   8   9  10  10  11  11  11  11  11  
 LCS      40       R     4    6   31       C        0   1   1   2   2   2   3   5   6   6   7   8   9  10  10  11  11  11  11  11  
 LCS      41       A     4    6   30       C        0   1   1   2   3   3   4   5   6   6   7   8   9  10  10  11  11  11  11  11  
 LCS      42       G     4    6   25       C        0   1   1   2   3   3   4   5   6   6   7   8   9  10  10  11  11  11  11  11  
 LCS      43       R     4    6   25       C        0   0   1   2   2   2   3   4   5   5   7   7   7   8   8   9  10  11  11  11  
 LCS      44       A     4    6   25       C        0   0   1   1   2   2   3   4   4   5   6   6   7   8   8   9   9  10  11  11  
 LCS      45       K     4    4   23       C        0   0   1   1   2   2   2   3   3   4   5   6   7   8   8   9   9  10  11  11  
 LCS      46       P     3    4   15       C        0   0   0   1   1   1   1   2   2   3   3   4   4   6   6   6   8   9  11  11  
 LCS      47       G     3    4   15       C        0   0   0   1   1   1   2   2   2   3   3   5   6   6   6   7   8  10  11  11  
 LCS      48       L     5    8   15       C        1   1   2   2   2   2   2   3   3   4   5   5   7   8   8   9   9  10  11  11  
 LCS      49       L     7    8   15       C        1   1   2   2   2   2   2   3   3   4   5   6   7   8   8   9   9  10  11  11  
 LCS      50       R     7    8   15       H        1   1   2   2   2   2   2   3   3   4   5   6   7   8   8   9   9  10  11  11  
 LCS      51       Q     7    8   15       H        1   1   2   2   2   2   2   2   2   3   4   4   5   6   7   8   9   9  10  11  
 LCS      52       H     7    8   15       H        1   1   2   2   2   2   2   3   3   4   5   5   6   6   7   8   9  10  11  11  
 LCS      53       L     7    8   15       H        1   1   2   2   2   2   2   2   2   4   5   5   7   8   8   9   9  10  11  11  
 LCS      54       T     7    8   15       H        1   1   2   2   2   2   2   2   2   3   5   5   6   6   7   8   9  10  11  11  
 LCS      55       A     7    8   13       H        1   1   2   2   2   2   2   2   3   4   5   5   6   6   7   7   8   9  10  10  
 LCS      56       V     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      57       K     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      58       A     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      59       A     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      60       T     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      61       E     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      62       I     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      63       C     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      64       G     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      65       A     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      66       T     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      67       V     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      68       E     3    6   11       E        0   0   1   1   1   1   1   2   2   2   2   2   2   3   3   4   4   4   4   7  
 LCS      69       G     3    6   11       C        0   0   1   1   1   1   1   1   2   2   2   2   2   3   3   4   4   4   6   7  
 LCS      70       A     3    6   12       C        0   0   1   1   1   1   1   2   2   2   2   2   3   3   3   4   4   4   6   7  
 LCS      71       E     3    6   12       C        0   0   0   1   1   1   1   2   2   2   2   2   3   3   3   4   4   4   4   5  
 LCS      72       L     3    6   12       C        0   0   1   1   1   1   1   2   2   2   2   2   3   3   3   4   4   4   4   5  
 LCS      73       G     3    6   12       C        0   0   0   1   1   1   1   2   2   2   2   2   3   3   3   4   4   4   4   5  
 LCS      74       S     4    8   12       C        0   0   1   2   2   2   2   2   2   2   2   2   3   3   3   3   5   5   6   7  
 LCS      75       Q     4    8   12       C        0   0   1   2   2   2   2   2   2   2   2   2   3   3   3   3   5   5   6   7  
 LCS      76       R     6    8   12       C        0   1   1   2   2   2   2   2   2   2   2   4   5   5   5   6   6   7   7   7  
 LCS      77       L     6    8   12       E        0   1   1   2   2   2   3   3   3   3   3   4   5   5   5   6   6   7   7   7  
 LCS      78       L     6    8   12       E        0   1   1   2   2   2   3   3   3   3   3   4   5   5   5   6   6   7   7   7  
 LCS      79       F     6    8   12       E        0   1   1   2   2   2   3   3   3   3   3   4   5   5   5   6   6   7   7   7  
 LCS      80       R     6    8   12       E        0   1   1   2   2   2   2   2   2   3   3   4   5   5   5   6   6   7   7   7  
 LCS      81       P     6    8   12       C        0   1   1   2   2   2   2   2   2   3   3   4   5   5   5   6   6   7   7   7  
 LCS      82       G     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      83       T     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      84       V     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      85       R     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      86       G     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      87       G     5   10   18       C        1   1   1   2   2   2   2   2   3   4   4   4   5   5   6   6   6   7   7   7  
 LCS      88       D     5   10   18       E        1   1   1   2   2   2   2   2   3   4   4   4   5   5   6   6   6   7   7   7  
 LCS      89       Y     5   10   18       E        1   1   1   2   2   2   3   3   3   4   4   4   5   5   6   6   6   7   7   7  
 LCS      90       R     6   10   18       E        1   1   1   2   2   2   3   3   3   4   4   4   5   5   6   6   6   7   7   7  
 LCS      91       F     6   10   18       E        1   1   1   2   2   2   3   3   3   4   4   4   5   5   6   6   6   7   7   8  
 LCS      92       A     6   10   18       E        1   1   1   2   2   2   3   3   3   4   4   4   5   5   6   6   6   7   8   8  
 LCS      93       I     6   10   18       E        1   1   1   2   2   2   3   3   3   4   4   4   5   5   6   6   6   7   8   8  
 LCS      94       G     6   10   18       E        1   1   1   2   2   2   3   3   3   4   4   4   5   5   6   6   6   7   8   8  
 LCS      95       S     6   10   18       E        1   1   1   2   2   2   3   3   3   4   4   4   5   5   6   6   6   7   8   8  
 LCS      96       A     4   10   18       E        1   1   1   1   2   2   3   3   3   4   4   4   5   5   6   6   6   7   8   8  
 LCS      97       G     4    5   18       E        1   1   1   1   1   2   2   2   3   4   4   4   5   5   6   6   6   7   8  11  
 LCS      98       S     4    5   18       E        0   0   1   1   2   2   2   3   3   4   4   4   5   5   6   6   6   7  11  11  
 LCS      99       C     4    5   18       H        0   0   1   1   1   2   2   3   3   4   4   4   5   5   6   6   6   7   8   8  
 LCS     100       T     4    5   18       H        0   0   1   1   1   1   1   2   3   4   4   4   5   5   6   6   6   7   8   8  
 LCS     101       L     3    3   18       H        0   0   0   0   1   1   1   2   2   3   3   4   5   5   5   5   6   7   8   8  
 LCS     102       V     3    3   18       H        0   0   1   1   1   1   2   3   3   4   4   4   5   5   6   6   6   7   8   8  
 LCS     103       L     3    4   18       H        0   0   1   1   1   2   2   2   3   4   4   4   5   5   6   6   6   7   8   8  
 LCS     104       Q     3    4   18       H        0   0   1   1   1   2   2   3   3   4   5   5   5   6   7   7   8   8  10  10  
 LCS     105       T     3    4   17       H        0   0   1   1   1   2   2   3   3   4   5   5   5   6   7   7   8   9  10  10  
 LCS     106       V     3    4   17       H        0   0   1   1   1   2   2   2   3   3   3   4   5   6   7   7   7   8  10  10  
 LCS     107       L     3    4   16       H        0   0   1   1   1   1   2   2   3   3   4   4   5   5   6   6   7   8  10  10  
 LCS     108       P     3    4   16       H        0   0   1   1   1   1   2   2   3   3   5   5   5   6   7   7   8   9  10  10  
 LCS     109       A     3    4   16       H        0   0   0   1   1   2   2   3   3   4   5   5   5   6   7   7   8   9  10  10  
 LCS     110       L     3    4   16       H        0   0   0   1   1   1   2   2   3   3   4   4   4   5   7   7   8   9  10  10  
 LCS     111       W     3    4   16       C        0   0   1   1   1   1   1   2   3   3   4   4   4   5   7   7   8   9  10  10  
 LCS     112       F     3    6   16       C        0   0   1   1   1   1   1   2   3   3   4   4   4   5   5   5   8   9  10  10  
 LCS     113       A     3    6   16       C        0   0   1   1   1   1   1   2   2   3   4   4   4   5   7   7   8   9  10  10  
 LCS     114       D     3    6   16       C        0   0   1   1   1   1   1   2   3   3   4   4   4   5   5   5   6   7   8   8  
 LCS     115       G     3    6   16       C        0   0   1   1   1   1   1   2   3   3   4   4   4   5   5   5   6   7   8   8  
 LCS     116       P     5    7   16       C        0   1   1   1   2   2   2   3   3   3   4   4   4   4   5   5   6   7   8   8  
 LCS     117       S     5    7   16       E        0   1   1   1   2   2   2   3   3   3   4   4   4   4   5   5   6   7   8   8  
 LCS     118       R     5    7   16       E        0   1   1   1   2   2   2   3   3   3   3   4   4   4   5   5   6   7   8   8  
 LCS     119       V     5    7   16       E        0   1   1   1   2   2   2   3   3   3   3   4   4   4   5   5   6   7   8   9  
 LCS     120       E     5    7   16       E        0   1   1   1   2   2   2   3   3   3   3   4   4   4   5   6   7   7   9  10  
 LCS     121       V     4    8   16       E        0   0   1   1   2   2   2   3   3   3   5   5   7   8   8   9   9  10  11  11  
 LCS     122       S     4    8   16       E        0   1   1   1   2   2   2   3   4   4   5   6   7   8   8   9   9  10  11  11  
 LCS     123       G     4    8   16       E        0   1   1   1   2   2   2   3   4   4   5   6   7   8   8   9   9  10  11  11  
 LCS     124       G     4    8   16       E        0   1   1   1   2   2   2   3   4   4   5   6   7   8   8   9   9  10  11  11  
 LCS     125       T     4    8   16       C        0   1   1   1   2   2   2   3   4   4   5   6   7   8   8   9   9  10  11  11  
 LCS     126       D     4    8   16       E        0   1   1   1   2   2   2   3   4   4   5   6   7   8   8   9   9  10  11  11  
 LCS     127       N     4    8   16       C        0   0   1   1   2   2   2   3   4   4   5   6   6   8   8   9   9   9  11  11  
 LCS     128       P     4    8   16       C        0   0   1   1   2   2   2   3   4   4   5   5   6   8   8   9   9   9  11  11  
 LCS     129       S     3    5   16       C        0   0   1   1   1   2   2   3   3   4   5   6   7   8   8   9   9  10  11  11  
 LCS TOTAL_SCORE (RMS CUTOFF   1.00):   0.53 
 
 NUMBER_OF_CA_Tg:  335      NUMBER_OF_CA_Pr:  108      PERCENT_OF_CA:  32.24  
 
GLOBAL_DISTANCE_TEST (the largest set of residues under DISTANCE_CUTOFF (using LCS results)): 
 GDT DISTANCE_CUTOFF     0.50    1.00    1.50    2.00    2.50    3.00    3.50    4.00    4.50    5.00    5.50    6.00    6.50    7.00    7.50    8.00    8.50    9.00    9.50   10.00  
 GDT NUMBER_OF_CA_max      11      13      13      14      14      16      17      19      21      24      26      29      32      34      36      37      38      39      39      40  
 GDT PERCENT_OF_CA_Pr   10.19   12.04   12.04   12.96   12.96   14.81   15.74   17.59   19.44   22.22   24.07   26.85   29.63   31.48   33.33   34.26   35.19   36.11   36.11   37.04 
 GDT PERCENT_OF_CA_Tg    3.28    3.88    3.88    4.18    4.18    4.78    5.07    5.67    6.27    7.16    7.76    8.66    9.55   10.15   10.75   11.04   11.34   11.64   11.64   11.94 
 GDT FRAGMENT: Beg-End  17-28   16-28   16-28   15-28   15-28    5-28    5-38    5-38    8-42    5-39    5-39    6-41    6-42    5-42    5-42    5-42    5-42    5-43    5-43    5-44  
 GDT RMS_LOCAL           0.37    0.61    0.61    1.08    1.08    1.84    2.19    2.57    3.33    3.54    3.89    4.52    4.74    4.94    5.13    5.24    5.36    5.59    5.59    5.96 
 GDT RMS_ALL_CA         23.99   24.00   24.00   24.46   24.46   25.01   25.34   25.89   25.47   25.63   25.44   25.64   25.19   24.89   25.09   25.37   25.24   24.90   24.90   24.44 
 
 
 TEST (CA)  RMS =  15.81               (Number of atoms:  108) 
 
 (CA)  RMS:                   CRMSCA         NP     PP     TN 
     ALL . . . . . . . . . .   15.81        108    32.2   335     CRMSCA  
     CRN = ALL/NP  . . . . .    0.1464                            CRMSCA  
     SECONDARY STRUCTURE . .   15.58         64    31.7   202     CRMSCA  
     SURFACE . . . . . . . .   17.34         48    29.8   161     CRMSCA  
     BURIED  . . . . . . . .   14.47         60    34.5   174     CRMSCA  
 (MC)  RMS:                   CRMSMC         NP     PP     TN 
     ALL . . . . . . . . . .   15.81        524    32.0  1639     CRMSMC  
     SECONDARY STRUCTURE . .   15.53        315    31.5  1000     CRMSMC  
     SURFACE . . . . . . . .   17.19        234    29.7   787     CRMSMC  
     BURIED  . . . . . . . .   14.60        290    34.0   852     CRMSMC  
 (SC)  RMS:                   CRMSSC         NP     PP     TN 
     ALL . . . . . . . . . .   17.12        355    30.8  1152     CRMSSC  
     RELIABLE SIDE CHAINS  .   17.24        301    32.2   936     CRMSSC  
     SECONDARY STRUCTURE . .   16.69        226    30.4   744     CRMSSC  
     SURFACE . . . . . . . .   19.22        160    28.1   570     CRMSSC  
     BURIED  . . . . . . . .   15.18        195    33.5   582     CRMSSC  
 (ALL) RMS:                   CRMSALL        NP     PP     TN 
     ALL . . . . . . . . . .   16.36        787    31.6  2492     CRMSALL 
     SECONDARY STRUCTURE . .   16.06        482    31.1  1552     CRMSALL 
     SURFACE . . . . . . . .   18.07        352    29.0  1214     CRMSALL 
     BURIED  . . . . . . . .   14.84        435    34.0  1278     CRMSALL 
 
Accuracy of estimates of atomic coordinate errors: model <-> target 
 
 (CA)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   11.923      0.634       0.317    108    32.2   335     ERRCA  
     SECONDARY STRUCTURE . .   12.043      0.650       0.325     64    31.7   202     ERRCA  
     SURFACE . . . . . . . .   13.334      0.657       0.329     48    29.8   161     ERRCA  
     BURIED  . . . . . . . .   10.794      0.615       0.307     60    34.5   174     ERRCA  
 (MC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   11.918      0.634       0.317    524    32.0  1639     ERRMC  
     SECONDARY STRUCTURE . .   11.970      0.648       0.324    315    31.5  1000     ERRMC  
     SURFACE . . . . . . . .   13.165      0.654       0.327    234    29.7   787     ERRMC  
     BURIED  . . . . . . . .   10.911      0.618       0.309    290    34.0   852     ERRMC  
 (SC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   13.068      0.650       0.325    355    30.8  1152     ERRSC  
     RELIABLE SIDE CHAINS  .   13.236      0.654       0.327    301    32.2   936     ERRSC  
     SECONDARY STRUCTURE . .   12.949      0.660       0.330    226    30.4   744     ERRSC  
     SURFACE . . . . . . . .   14.970      0.672       0.336    160    28.1   570     ERRSC  
     BURIED  . . . . . . . .   11.507      0.632       0.316    195    33.5   582     ERRSC  
 (ALL) ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   12.389      0.641       0.320    787    31.6  2492     ERRALL 
     SECONDARY STRUCTURE . .   12.412      0.654       0.327    482    31.1  1552     ERRALL 
     SURFACE . . . . . . . .   13.904      0.661       0.330    352    29.0  1214     ERRALL 
     BURIED  . . . . . . . .   11.163      0.624       0.312    435    34.0  1278     ERRALL 
 
 
 
DISTANCES: Percent of total atoms where distance (target <-> model) in global 
           superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms 
            D < 1     D < 2     D < 3     D < 5    D < 10      NP      TN 
CA  (N)         0         0         0         2        17     108     335   DISTCA 
CA  (P)      0.00      0.00      0.00      0.60      5.07             335   DISTCA 
CA  (RMS)    0.00      0.00      0.00      3.85      8.08                   DISTCA 
 
ALL (N)         0         0         2        12       114     787    2492   DISTALL 
ALL (P)      0.00      0.00      0.08      0.48      4.57            2492   DISTALL 
ALL (RMS)    0.00      0.00      2.73      3.50      7.91                   DISTALL 
 
 
 
 
END of the results output 
