 
####################################################### 
#                                                     # 
#                        ACE                          # 
#                                                     # 
#        Ab-initio protein structure prediction       # 
#                         &                           # 
#               Comparative modeling                  # 
#                                                     # 
#                     Evaluator                       # 
#                                                     # 
#                ----------------- 11/1998            # 
#                                                     # 
#                         by                          # 
#           Adam Zemla & Ceslovas Venclovas           # 
#                                                     # 
#         Protein Structure Prediction Center         # 
#      Lawrence Livermore National Laboratory, CA     # 
#                                                     # 
####################################################### 
########################## 
#                        # 
#    ACE parameters:     # 
#                        # 
########################## 
# 
# MEASURES: 
# 
# For AB: 0 3 9 13 14 
# For CM: 0 1 2 3 6 7 8 9 10 11 12 13 14 18 
# 
ARMSMC  0 1 2     7 8 9    11 12 13 14 18 
ARMSSC  0 1 2 3 6 7 8 9    11 12 13 14 18 
# 
CRMSCA  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSMC  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSSC  0 1 2 3 6     9    11 12 13 14 18 
CRMSALL 0 1 2     7 8 9    11 12 13 14 18 
# 
D-E_CA  0 1 2     7 8 9    11 12 13 14 18 
D-E_MC  0 1 2     7 8 9    11 12 13 14 18 
D-E_SC  0 1 2 3 6 7 8 9    11 12 13 14 18 
D-E_ALL 0 1 2     7 8 9    11 12 13 14 18 
# 
# Output parameters 
# 
DIHED-OUTPUT        0         #    1 - ON, 0 - OFF 
RES-CONTACTS        0         #    1 - ON, 0 - OFF 
SS-OUTPUT           1         #    1 - ON, 0 - OFF 
PHI-PSI             0         #    1 - SEPARATELY, 0 - NO  
# 
# Calculation parameters 
# 
SOV-METHOD          1         #    0 - SOV 94,  1 - SOV 
# 
TEMP-FACTOR         30.0      #    Target structure temperature factor cutoff 
ACCESS-CUTOFF       0.20      #    Solvent accessibility cutoff   
ANGLES-CORRECT      30.0      #    target-model  (diff < 30.0)    
DSSP-HELIX          6         #    Secondary Structure subset: helix cutoff  
DSSP-STRAND         3         #    Secondary Structure subset: strand cutoff 
ROTAMERS-LIMIT      30.0      #    target-parent (diff > 30.0) 
ROTATION-MATRIX     0         #    1 - ON, 0 - OFF   
SC-SWAPPING         1         #    1 - ON, 0 - OFF    
SEP-CONTACTS        1         #    Separation interval along the chain 
RESIDUE-CONTACTS    8.0       #    Contact definition between two C-beta atoms 
# 
CRMS-METHOD         1         #    0 - ALL, 1 - CA, 2 - MC+CB, 3 - CA (iter)  
ITER-CUTOFF         2.5       #    DISTANCE cutoff (for CA (iter))  
LCS_GDT             1         #    LCS and GDT calculations (1 - ON, 0 - OFF) 
########################## 
#                        # 
#      ACE results:      # 
#                        # 
########################## 
 
 
 
#          The number of residues in SS section: 104 , MODEL 104 , TARGET 158 
#          The number of residues possible to evaluate: 104 
 
 
 SECONDARY STRUCTURE PREDICTION: 
       NUM    RES   SS   Prediction   Probability 
 SSP     1     T     C     C             1.00 
 SSP     2     V     E     C             1.00 
 SSP     3     A     E     E             1.00 
 SSP     4     Y     E     E             1.00 
 SSP     5     I     E     E             1.00 
 SSP     6     A     E     E             1.00 
 SSP     7     I     E     E             1.00 
 SSP     8     G     E     C             1.00 
 SSP     9     S     E     C             1.00 
 SSP    10     N     C     E             1.00 
 SSP  BREAK 
 SSP    16     E     H     C             1.00 
 SSP    17     Q     H     H             1.00 
 SSP    18     V     H     H             1.00 
 SSP    19     N     H     H             1.00 
 SSP    20     A     H     H             1.00 
 SSP    21     A     H     H             1.00 
 SSP    22     L     H     H             1.00 
 SSP    23     K     H     H             1.00 
 SSP    24     A     H     H             1.00 
 SSP    25     L     H     H             1.00 
 SSP    26     G     H     H             1.00 
 SSP    27     D     C     H             1.00 
 SSP    28     I     C     C             1.00 
 SSP    29     P     C     C             1.00 
 SSP    30     E     C     C             1.00 
 SSP    31     S     E     C             1.00 
 SSP    32     H     E     C             1.00 
 SSP    33     I     E     E             1.00 
 SSP    34     L     E     E             1.00 
 SSP    35     T     E     E             1.00 
 SSP    36     V     E     E             1.00 
 SSP    37     S     C     C             1.00 
 SSP    38     S     C     E             1.00 
 SSP  BREAK 
 SSP    48     Q     C     C             1.00 
 SSP    49     D     C     C             1.00 
 SSP    50     Q     C     C             1.00 
 SSP    51     P     C     C             1.00 
 SSP    52     D     C     C             1.00 
 SSP    53     Y     E     H             1.00 
 SSP    54     L     E     H             1.00 
 SSP    55     N     E     H             1.00 
 SSP    56     A     E     H             1.00 
 SSP    57     A     E     H             1.00 
 SSP    58     V     E     H             1.00 
 SSP    59     A     E     H             1.00 
 SSP    60     L     E     H             1.00 
 SSP    61     E     E     H             1.00 
 SSP    62     T     E     H             1.00 
 SSP    63     S     C     H             1.00 
 SSP    64     L     C     H             1.00 
 SSP    65     A     C     C             1.00 
 SSP    66     P     H     C             1.00 
 SSP  BREAK 
 SSP    92     R     C     C             1.00 
 SSP    93     T     C     C             1.00 
 SSP    94     L     C     C             1.00 
 SSP    95     D     E     C             1.00 
 SSP    96     L     E     C             1.00 
 SSP    97     D     E     C             1.00 
 SSP    98     I     E     E             1.00 
 SSP    99     M     E     E             1.00 
 SSP   100     L     E     E             1.00 
 SSP   101     F     E     E             1.00 
 SSP   102     G     C     E             1.00 
 SSP   103     N     C     C             1.00 
 SSP  BREAK 
 SSP   119     K     H     C             1.00 
 SSP   120     N     H     C             1.00 
 SSP   121     R     C     C             1.00 
 SSP   122     G     H     C             1.00 
 SSP   123     F     H     C             1.00 
 SSP   124     M     H     C             1.00 
 SSP   125     L     H     H             1.00 
 SSP   126     W     H     H             1.00 
 SSP   127     P     H     H             1.00 
 SSP   128     L     H     H             1.00 
 SSP   129     F     H     H             1.00 
 SSP   130     E     H     H             1.00 
 SSP   131     I     H     H             1.00 
 SSP   132     A     C     C             1.00 
 SSP   133     P     C     C             1.00 
 SSP   134     E     C     C             1.00 
 SSP   135     L     C     E             1.00 
 SSP   136     V     E     E             1.00 
 SSP   137     F     C     E             1.00 
 SSP   138     P     C     E             1.00 
 SSP   139     D     C     C             1.00 
 SSP   140     G     C     C             1.00 
 SSP   141     E     C     C             1.00 
 SSP   142     M     E     H             1.00 
 SSP   143     L     H     H             1.00 
 SSP   144     R     H     H             1.00 
 SSP   145     Q     H     H             1.00 
 SSP   146     I     H     H             1.00 
 SSP   147     L     H     H             1.00 
 SSP   148     H     H     H             1.00 
 SSP   149     T     H     H             1.00 
 SSP   150     R     C     H             1.00 
 SSP   151     A     C     C             1.00 
 SSP   152     F     C     C             1.00 
 SSP   153     D     C     H             1.00 
 SSP   154     K     C     H             1.00 
 SSP   155     L     C     H             1.00 
 SSP   156     N     E     H             1.00 
 SSP   157     K     E     H             1.00 
 SSP   158     W     C     C             1.00 
 
 NP      - Number of predicted residues 
 PP      - Percent of predicted residues 
 Q3      - Residues predicted correctly (H, E, C) 
 Qhelix  - Residues predicted correctly (HELIX) 
 Qstrand - Residues predicted correctly (STRAND) 
 Qcoil   - Residues predicted correctly (COIL) 
 SOV     - Segment overlap quantity 
 
                     Q3      Qhelix   Qstrand   Qcoil      PP 
 Qindex              60.6      77.4     40.0     65.8     65.8 
 
                     ALL      HELIX    STRAND    COIL      PP 
 SOV observed        70.2      90.3     52.9     69.7     65.8 
 
           Considered    Percent predicted   Percent predicted 
            segments        correctly         as wrong type 
 SEG           10              60.0              20.0 
 
         Number of wrong    Number of wrong 
             breaks             joins 
 B/J            0                 0 
 
  CONFIDENCE (P)     Average     NP    PP/BIN     Q3 
 BIN  0.90 - 1.00      1.00     104    100.0     60.6 
 
 BIN  0.00 - 1.00      1.00     104    100.0     60.6 
 
 
 
 
              predicted        number of target      total number   total number 
                as a         contacts possible in         of             of 
               contact         predicted subset:       contacts       contacts 
            percent  number    percent    number       in target    in prediction 
 CONTACTS:     0.0      0         0.0        0             0              0 
 
 
 
 CONSIDERED - explicitly provided contacts (with positive confidence) or 
              non contacts (with negative confidence) possible to evaluate 
 SEP      - Minimum separation between residues considered 
 NPC      - Number of contacts predicted correctly 
 PC(P)    - Percent of contacts predicted correctly from CONSIDERED in PREDICTION 
 PC(T)    - Percent of contacts predicted correctly from CONSIDERED in TARGET with SEP limit 
 PC(TT)   - Percent of contacts predicted correctly from TOTAL in TARGET with SEP limit 
 
                        CONSIDERED     CONSIDERED       TOTAL          TOTAL 
                      in PREDICTION    in TARGET    in PREDICTION    in TARGET 
 ALL RESIDUES USED         104             104           104            158 
 ALL CONTACTS (< 8.0A)     499             449           499            761 
 
               in PREDICTION      Predicted correctly          Submitted as        in TARGET 
                CONSIDERED     NPC   PC(P)   PC(T)   PC(TT)    NOT  predicted   CONSIDERED  TOTAL  |   SEP 
 RES CONTACTS       499        244   48.90   54.34   32.06       0     0.00         449       761  |   1-9999 
 RES CONTACTS       272        219   80.51   91.25   53.81       0     0.00         240       407  |   1-4    
 RES CONTACTS        15          3   20.00   16.67    6.98       0     0.00          18        43  |   5-8    
 RES CONTACTS       212         22   10.38   11.52    7.07       0     0.00         191       311  |   9-9999 
 
 
 
# WARNING! TARGET 1266 atoms, MODEL 963 atoms, 963 common with TARGET 
           Number of atoms possible to evaluate: 515 
 
MEASURES: 
 
 
ANGLES RMS : model <-> target 
 
 (MC: PHI+PSI) DIHED RMS:      ARMSMC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    83.47           52.5   198    63.1   314     ARMSMC  
     SECONDARY STRUCTURE . .    67.00           67.8   118    74.7   158     ARMSMC  
     SURFACE . . . . . . . .    88.78           49.5   105    58.3   180     ARMSMC  
     BURIED  . . . . . . . .    77.03           55.9    93    69.4   134     ARMSMC  
 (SC: CHI1) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0   137     ARMSSC1 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0   129     ARMSSC1 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    68     ARMSSC1 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    82     ARMSSC1 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    55     ARMSSC1 
 (SC: CHI2) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0   114     ARMSSC2 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    80     ARMSSC2 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    57     ARMSSC2 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    69     ARMSSC2 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    45     ARMSSC2 
 (SC: CHI3) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    38     ARMSSC3 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    31     ARMSSC3 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    17     ARMSSC3 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    33     ARMSSC3 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     5     ARMSSC3 
 (SC: CHI4) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    15     ARMSSC4 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    15     ARMSSC4 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0     4     ARMSSC4 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    14     ARMSSC4 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     1     ARMSSC4 
 
COORDINATES RMS : model <-> target 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   5.00): 
 FRAGMENT  1    1 - 10   10   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    10      1 - 10       1.86     1.86 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  2   16 - 38   23   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    23     16 - 38       4.02     4.02 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  3   48 - 66   19   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    10     48 - 57       4.65    11.56 
  LONGEST_CONTINUOUS_SEGMENT    10     49 - 58       4.65    10.18 
  LONGEST_CONTINUOUS_SEGMENT    10     56 - 65       4.71    15.04 
  LONGEST_CONTINUOUS_SEGMENT    10     57 - 66       4.48    18.32 
  LCS LOCAL_SCORE:             52.63 
 
 FRAGMENT  4   92 - 103  12   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    12     92 - 103      4.78     4.78 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  5  119 - 158  40   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    24    119 - 142      4.83    16.95 
  LCS LOCAL_SCORE:             52.00 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   2.00): 
 FRAGMENT  1    1 - 10   10   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    10      1 - 10       1.86     1.86 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  2   16 - 38   23   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    15     16 - 30       1.89     6.10 
  LCS LOCAL_SCORE:             53.12 
 
 FRAGMENT  3   48 - 66   19   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     6     49 - 54       1.64    12.56 
  LCS LOCAL_SCORE:             21.88 
 
 FRAGMENT  4   92 - 103  12   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     7     95 - 101      2.00     6.16 
  LONGEST_CONTINUOUS_SEGMENT     7     96 - 102      1.95     6.88 
  LCS LOCAL_SCORE:             50.00 
 
 FRAGMENT  5  119 - 158  40   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    15    119 - 133      1.83    18.55 
  LONGEST_CONTINUOUS_SEGMENT    15    121 - 135      1.90    17.60 
  LONGEST_CONTINUOUS_SEGMENT    15    122 - 136      1.87    17.34 
  LCS LOCAL_SCORE:             27.50 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   1.00): 
 FRAGMENT  1    1 - 10   10   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     8      2 - 9        0.73     2.19 
  LCS LOCAL_SCORE:             72.00 
 
 FRAGMENT  2   16 - 38   23   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    13     16 - 28       0.44     7.03 
  LCS LOCAL_SCORE:             39.89 
 
 FRAGMENT  3   48 - 66   19   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     4     50 - 53       0.97    18.05 
  LONGEST_CONTINUOUS_SEGMENT     4     51 - 54       0.86    14.08 
  LCS LOCAL_SCORE:             17.17 
 
 FRAGMENT  4   92 - 103  12   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     5     96 - 100      0.72     8.39 
  LCS LOCAL_SCORE:             33.33 
 
 FRAGMENT  5  119 - 158  40   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    12    122 - 133      0.85    18.06 
  LCS LOCAL_SCORE:             19.38 
 
 
 LCS                   LENGTH_OF_THE 
 LCS  RESIDUE  RESIDUE    CONTINUOUS  SECONDARY 
 LCS   NUMBER     NAME       SEGMENT  STRUCTURE   GDT_DATA_COLUMNS (PERCENT OF THE TARGET) 
 LCS       1       T     5   10   10       C        1   2   4   6   8  12  14  15  19  23  25  28  31  32  32  34  34  36  37  39  
 LCS       2       V     8   10   10       E        2   5   5   6   6  12  14  15  19  23  25  28  31  32  32  34  34  36  37  39  
 LCS       3       A     8   10   10       E        3   5   5   6   8  12  14  15  19  23  24  27  31  32  32  34  34  36  37  39  
 LCS       4       Y     8   10   10       E        3   5   5   6   8  12  14  15  19  23  25  28  31  32  32  34  34  36  37  39  
 LCS       5       I     8   10   10       E        3   5   5   6   9  12  14  15  19  23  24  27  31  32  32  34  34  36  37  39  
 LCS       6       A     8   10   10       E        3   5   5   5   8  12  14  15  19  23  25  28  31  32  32  34  34  36  37  39  
 LCS       7       I     8   10   10       E        3   5   5   6   8  12  14  15  19  23  25  28  31  32  32  34  34  36  37  39  
 LCS       8       G     8   10   10       E        3   5   5   6   8  12  14  15  19  23  25  28  31  32  32  34  34  36  37  39  
 LCS       9       S     8   10   10       E        3   5   5   6   8  12  14  15  17  20  25  28  31  32  32  34  34  36  37  39  
 LCS      10       N     3   10   10       C        0   1   1   3   3   8  14  15  17  20  25  28  31  32  32  34  34  36  37  39  
 LCS      11       L     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      12       A     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      13       S     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      14       P     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      15       L     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      16       E    13   15   23       H        1   7   8   8   8  11  12  15  15  20  25  28  31  32  32  34  34  36  37  39  
 LCS      17       Q    13   15   23       H        7   7   8   8   8  12  14  15  19  22  25  28  31  32  32  34  34  36  37  39  
 LCS      18       V    13   15   23       H        7   7   8   8   8  12  14  15  19  23  25  28  31  32  32  34  34  36  37  39  
 LCS      19       N    13   15   23       H        7   7   8   8   8  12  14  15  19  23  25  28  31  32  32  34  34  36  37  39  
 LCS      20       A    13   15   23       H        7   7   8   8   8  12  14  15  19  23  25  28  31  32  32  34  34  36  37  39  
 LCS      21       A    13   15   23       H        7   7   8   8   8  12  14  15  19  23  25  28  31  32  32  34  34  36  37  39  
 LCS      22       L    13   15   23       H        7   7   8   8   8  12  14  15  19  23  25  28  31  32  32  34  34  36  37  39  
 LCS      23       K    13   15   23       H        7   7   8   8   8  12  14  15  19  23  25  28  31  32  32  34  34  36  37  39  
 LCS      24       A    13   15   23       H        7   7   8   8   8  12  14  15  19  23  25  28  31  32  32  34  34  36  37  39  
 LCS      25       L    13   15   23       H        7   7   8   8   8  12  14  15  19  23  25  28  31  32  32  34  34  36  37  39  
 LCS      26       G    13   15   23       H        7   7   8   8   8  12  14  15  18  23  25  28  31  32  32  34  34  36  37  39  
 LCS      27       D    13   15   23       C        7   7   8   8   8  12  14  15  18  23  25  28  31  32  32  34  34  36  37  39  
 LCS      28       I    13   15   23       C        7   7   8   8   8  12  12  14  17  20  25  28  31  32  32  34  34  36  37  39  
 LCS      29       P     3   15   23       C        1   1   2   6   8  12  14  15  19  23  25  28  31  32  32  34  34  36  37  39  
 LCS      30       E     3   15   23       C        1   1   1   2   2   6   7  10  13  16  18  26  31  32  32  34  34  36  37  39  
 LCS      31       S     3    7   23       E        0   1   3   5   7  12  13  15  19  23  25  28  31  32  32  34  34  36  37  39  
 LCS      32       H     4    7   23       E        1   3   3   6   8  12  13  15  19  23  25  28  31  32  32  34  34  36  37  39  
 LCS      33       I     4    7   23       E        1   3   3   5   6   8  12  15  19  23  25  28  31  32  32  34  34  36  37  39  
 LCS      34       L     5    7   23       E        2   3   3   4   6   8  12  15  19  23  25  28  31  32  32  34  34  36  37  39  
 LCS      35       T     5    7   23       E        2   3   3   3   5   8  12  15  17  23  25  28  31  32  32  34  34  36  37  39  
 LCS      36       V     5    7   23       E        2   3   3   5   6   8  12  15  19  23  25  28  31  32  32  34  34  36  37  39  
 LCS      37       S     5    7   23       C        2   3   3   3   5   7  10  15  17  23  24  26  31  32  32  34  34  36  37  39  
 LCS      38       S     5    7   23       C        2   3   3   5   6   8  12  15  19  23  24  28  31  32  32  34  34  36  37  39  
 LCS      39       F     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      40       Y     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      41       R     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      42       T     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      43       P     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      44       P     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      45       L     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      46       G     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      47       P     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      48       Q     3    3   10       C        1   1   1   1   1   3   4   4   4   4   4   4   5   5   6   6   6   8   8   9  
 LCS      49       D     3    6   10       C        1   1   1   3   3   3   4   4   4   4   5   5   6   6  18  24  25  29  37  39  
 LCS      50       Q     4    6   10       C        1   1   2   3   3   3   4   4   4   4  20  22  22  24  25  27  31  36  37  39  
 LCS      51       P     4    6   10       C        1   1   2   3   3   3   4   4   4   4  17  18  22  24  25  27  29  32  37  39  
 LCS      52       D     4    6   10       C        1   1   2   3   3   3   4  14  15  17  18  22  22  24  25  31  34  36  37  39  
 LCS      53       Y     4    6   10       E        1   1   2   3   3   4   4   4   6   6   7  18  20  22  24  26  29  30  36  38  
 LCS      54       L     4    6   10       E        1   1   2   3   3   5   5   6   9  13  18  22  22  24  25  26  29  29  31  34  
 LCS      55       N     3    3   10       E        1   1   1   1   1  11  13  15  16  18  20  22  22  24  25  32  34  36  37  39  
 LCS      56       A     3    3   10       E        5   7   8   8   9  11  13  15  17  18  20  26  30  32  32  34  34  36  37  39  
 LCS      57       A     3    3   10       E        0   1   1   1   9  11  12  15  16  17  20  22  22  24  25  27  34  36  37  39  
 LCS      58       V     3    3   10       E        1   1   1   1   1   3   3  11  12  15  16  18  20  22  24  25  27  29  31  32  
 LCS      59       A     3    3   10       E        1   1   1   1   1   3   3   9  10  11  12  13  16  17  19  24  25  28  30  32  
 LCS      60       L     3    3   10       E        1   1   1   1   1   5   7   9  10  11  12  17  18  21  23  25  27  29  31  32  
 LCS      61       E     3    3   10       E        1   1   1   1   1   2   3   3   4   5  10  11  16  17  19  20  24  25  27  29  
 LCS      62       T     3    4   10       E        1   1   1   2   4   4   4   5   5   5   6  11  13  14  18  19  22  24  25  27  
 LCS      63       S     3    4   10       C        1   1   1   2   2   2   3   5   5   6   7  11  13  14  15  16  20  21  22  27  
 LCS      64       L     3    4   10       C        1   1   1   2   2   2   3   3   4   6   7  11  13  14  15  16  16  18  19  20  
 LCS      65       A     3    4   10       C        0   1   1   2   2   2   3   3   4   5   5   7   8  14  15  16  16  18  18  20  
 LCS      66       P     3    3   10       H        0   1   1   1   2   5   5   6   6   7   7   8   8  10  12  13  15  22  26  27  
 LCS      67       E     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      68       E     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      69       L     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      70       L     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      71       N     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      72       H     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      73       T     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      74       Q     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      75       R     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      76       I     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      77       E     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      78       L     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      79       Q     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      80       Q     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      81       G     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      82       R     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      83       V     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      84       R     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      85       K     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      86       A     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      87       E     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      88       R     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      89       W     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      90       G     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      91       P     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      92       R     3    3   12       C        1   1   1   1   2   3   3   3   4   4   5   5   6   6   7   7   7   7   7  12  
 LCS      93       T     3    4   12       C        1   1   1   2   2   3   3   3   4   4   5   5   6   6   7   7   7   7  16  17  
 LCS      94       L     3    4   12       C        1   1   1   2   2   2   3   3   4   4   6   6  10  12  12  12  13  16  17  18  
 LCS      95       D     3    7   12       E        0   1   1   2   3   5   5   5   6   6   8  11  13  14  15  16  16  18  18  18  
 LCS      96       L     5    7   12       E        1   3   3   3   4   5   5   5   6   7   8  11  13  14  15  16  16  18  18  18  
 LCS      97       D     5    7   12       E        1   3   3   3   4   5   5   5   6   7   8  11  13  14  15  16  16  18  19  22  
 LCS      98       I     5    7   12       E        1   3   3   3   4   5   5   5   6   7   8  18  20  23  24  27  30  31  33  36  
 LCS      99       M     5    7   12       E        1   3   4   6   8  12  14  15  19  23  24  26  29  32  32  34  34  36  37  39  
 LCS     100       L     5    7   12       E        1   3   3   3   4   5  13  15  17  23  24  27  31  32  32  34  34  36  37  39  
 LCS     101       F     4    7   12       E        1   2   2   3   4   5   5   5   6  13  19  22  23  29  31  34  34  36  37  39  
 LCS     102       G     4    7   12       C        1   2   2   3   4   5   5   5   6   7   8   8  13  14  15  19  20  27  28  28  
 LCS     103       N     3    5   12       C        0   1   1   1   3   7   7   7   7   8   8  11  13  14  15  16  17  18  19  22  
 LCS     104       E     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     105       V     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     106       I     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     107       N     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     108       T     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     109       E     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     110       R     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     111       L     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     112       T     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     113       V     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     114       P     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     115       H     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     116       Y     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     117       D     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     118       M     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     119       K     3   15   24       H        1   1   8   8   9  11  13  15  16  18  20  22  23  24  31  32  34  36  37  39  
 LCS     120       N     3   15   24       H        1   1   2   5   8  12  13  15  17  18  25  28  31  32  32  34  34  36  37  39  
 LCS     121       R     3   15   24       C        1   1   3   6   8  12  13  15  19  23  25  28  31  32  32  34  34  36  37  39  
 LCS     122       G    12   15   24       H        6   7   8   8   9  12  13  15  17  23  25  28  31  32  32  34  34  36  37  39  
 LCS     123       F    12   15   24       H        2   7   8   8   9  12  13  15  19  23  25  28  31  32  32  34  34  36  37  39  
 LCS     124       M    12   15   24       H        6   7   8   8   9  11  13  15  19  23  25  28  31  32  32  34  34  36  37  39  
 LCS     125       L    12   15   24       H        6   7   8   8   9  12  13  15  19  23  25  28  31  32  32  34  34  36  37  39  
 LCS     126       W    12   15   24       H        6   7   8   8   9  12  13  15  19  23  25  28  31  32  32  34  34  36  37  39  
 LCS     127       P    12   15   24       H        6   7   8   8   9  12  13  15  19  23  25  28  31  32  32  34  34  36  37  39  
 LCS     128       L    12   15   24       H        6   7   8   8   9  12  13  15  19  23  25  28  31  32  32  34  34  36  37  39  
 LCS     129       F    12   15   24       H        6   7   8   8   9  12  13  15  17  20  25  28  31  32  32  34  34  36  37  39  
 LCS     130       E    12   15   24       H        6   7   8   8   9  12  13  15  17  18  22  28  31  32  32  34  34  36  37  39  
 LCS     131       I    12   15   24       H        6   7   8   8   9  12  13  15  17  18  22  28  31  32  32  34  34  36  37  39  
 LCS     132       A    12   15   24       C        4   7   8   8   9  12  13  15  17  20  25  28  31  32  32  34  34  36  37  39  
 LCS     133       P    12   15   24       C        2   2   6   8   9  12  13  15  17  20  25  28  31  32  32  34  34  36  37  39  
 LCS     134       E     5   15   24       C        1   2   3   4   6   9  10  13  17  20  25  28  31  32  32  34  34  36  37  39  
 LCS     135       L     5   15   24       C        6   7   8   8   9  11  13  15  17  20  25  28  31  32  32  34  34  36  37  39  
 LCS     136       V     5   15   24       E        1   2   3   3   4   5   9  11  13  15  17  21  23  24  31  34  34  36  37  39  
 LCS     137       F     5    7   24       C        1   2   3   8   8  11  13  15  16  18  20  22  23  28  31  33  34  36  37  39  
 LCS     138       P     5    7   24       C        1   2   3   6   6   7   7   8   8  10  12  13  18  18  20  24  26  28  31  32  
 LCS     139       D     4    7   24       C        1   1   5   6   6   6   7   9  10  11  12  13  18  18  20  24  24  27  29  30  
 LCS     140       G     4    7   24       C        1   1   2   3   3   5   7   8   8  12  12  13  13  17  18  22  24  25  27  27  
 LCS     141       E     3   11   24       C        0   1   1   2   2   5   6   6   7   8   8  10  10  12  13  22  24  25  26  27  
 LCS     142       M    10   11   24       E        3   5   6   6   6   7   7   8   8   8   8  11  13  14  15  22  24  25  26  27  
 LCS     143       L    10   11   17       H        5   5   6   6   6   7   7   8   8   8   8  11  13  14  15  16  16  18  18  21  
 LCS     144       R    10   11   17       H        5   5   6   6   6   7   7   8   8   8   8  10  10  11  12  16  16  18  18  18  
 LCS     145       Q    10   11   17       H        5   5   6   6   6   7   7   8   8   8   8  10  10  12  13  14  15  16  17  18  
 LCS     146       I    10   11   17       H        5   5   6   6   6   7   7   8   8   8   8  10  10  12  13  14  15  16  17  18  
 LCS     147       L    10   11   17       H        5   5   6   6   6   7   7   8   8   8   8  10  10  12  13  14  15  16  17  18  
 LCS     148       H    10   11   17       H        5   5   6   6   6   7   7   8   8   8   8  10  10  12  13  14  15  16  17  18  
 LCS     149       T    10   11   17       H        5   5   6   6   6   7   7   8   8   8   8  10  10  12  13  14  15  16  17  18  
 LCS     150       R    10   11   17       C        5   5   6   6   6   7   7   8   8   8   8  10  10  12  13  14  15  16  17  18  
 LCS     151       A    10   11   17       C        1   3   6   6   6   7   7   8   8   8   8  10  10  12  13  14  15  16  17  18  
 LCS     152       F     3    3   17       C        1   1   1   1   2   2   3   4   6   7   8  10  10  12  13  13  14  15  15  16  
 LCS     153       D     3    3   17       C        1   1   1   1   2   2   3   3   6   7   8   8   9  12  13  13  14  15  15  17  
 LCS     154       K     3    3   16       C        0   1   1   1   2   2   3   3   5   7   8   9  10  12  13  13  14  15  15  17  
 LCS     155       L     3    3   16       C        0   1   1   1   2   2   2   3   4   5   6   8   9   9  10  13  14  15  15  17  
 LCS     156       N     3    3   16       E        0   1   1   1   2   2   2   3   4   5   6   6   8   9  10  10  10  10  10  11  
 LCS     157       K     3    3   14       E        0   1   1   1   2   2   2   3   4   5   6   6   8   9   9  10  10  10  10  14  
 LCS     158       W     3    3    7       C        0   1   1   1   2   2   2   3   4   4   4   4   4   4   5   5   6   7   7   9  
 LCS TOTAL_SCORE (RMS CUTOFF   1.00):   2.82 
 
 NUMBER_OF_CA_Tg:  158      NUMBER_OF_CA_Pr:  104      PERCENT_OF_CA:  65.82  
 
GLOBAL_DISTANCE_TEST (the largest set of residues under DISTANCE_CUTOFF (using LCS results)): 
 GDT DISTANCE_CUTOFF     0.50    1.00    1.50    2.00    2.50    3.00    3.50    4.00    4.50    5.00    5.50    6.00    6.50    7.00    7.50    8.00    8.50    9.00    9.50   10.00  
 GDT NUMBER_OF_CA_max      12      12      14      14      15      19      23      25      31      37      40      45      49      51      52      54      55      58      60      62  
 GDT PERCENT_OF_CA_Pr   11.54   11.54   13.46   13.46   14.42   18.27   22.12   24.04   29.81   35.58   38.46   43.27   47.12   49.04   50.00   51.92   52.88   55.77   57.69   59.62 
 GDT PERCENT_OF_CA_Tg    7.59    7.59    8.86    8.86    9.49   12.03   14.56   15.82   19.62   23.42   25.32   28.48   31.01   32.28   32.91   34.18   34.81   36.71   37.97   39.24 
 GDT FRAGMENT: Beg-End  17-28   17-28   56-135  56-135  56-135   1-99    1-99    1-137   1-128   1-128   1-135   1-135   1-135   1-135   1-135   1-136   1-137   1-137   1-137   1-137 
 GDT RMS_LOCAL           0.31    0.31    0.74    0.74    1.02    2.15    2.42    2.57    3.53    3.80    4.19    4.42    4.65    4.76    4.84    5.03    5.13    5.67    5.89    6.12 
 GDT RMS_ALL_CA         16.80   16.80   16.35   16.35   16.31   17.15   17.05   16.10   16.60   16.71   16.27   16.27   16.22   16.19   16.18   16.21   16.20   16.10   16.08   16.02 
 
 
 TEST (CA)  RMS =  14.51               (Number of atoms:  104) 
 
 (CA)  RMS:                   CRMSCA         NP     PP     TN 
     ALL . . . . . . . . . .   14.51        104    65.8   158     CRMSCA  
     CRN = ALL/NP  . . . . .    0.1395                            CRMSCA  
     SECONDARY STRUCTURE . .   12.59         60    75.9    79     CRMSCA  
     SURFACE . . . . . . . .   15.93         56    61.5    91     CRMSCA  
     BURIED  . . . . . . . .   12.65         48    71.6    67     CRMSCA  
 (MC)  RMS:                   CRMSMC         NP     PP     TN 
     ALL . . . . . . . . . .   14.63        515    65.9   782     CRMSMC  
     SECONDARY STRUCTURE . .   12.73        297    75.8   392     CRMSMC  
     SURFACE . . . . . . . .   16.01        277    61.4   451     CRMSMC  
     BURIED  . . . . . . . .   12.84        238    71.9   331     CRMSMC  
 (SC)  RMS:                   CRMSSC         NP     PP     TN 
     ALL . . . . . . . . . .   14.94         99    15.6   634     CRMSSC  
     RELIABLE SIDE CHAINS  .   14.94         99    18.8   528     CRMSSC  
     SECONDARY STRUCTURE . .   12.95         57    17.9   318     CRMSSC  
     SURFACE . . . . . . . .   16.44         53    13.4   395     CRMSSC  
     BURIED  . . . . . . . .   12.99         46    19.2   239     CRMSSC  
 (ALL) RMS:                   CRMSALL        NP     PP     TN 
     ALL . . . . . . . . . .   14.63        515    40.7  1266     CRMSALL 
     SECONDARY STRUCTURE . .   12.73        297    46.8   634     CRMSALL 
     SURFACE . . . . . . . .   16.01        277    36.5   759     CRMSALL 
     BURIED  . . . . . . . .   12.84        238    46.9   507     CRMSALL 
 
Accuracy of estimates of atomic coordinate errors: model <-> target 
 
 (CA)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    7.307      0.354       0.194    104    65.8   158     ERRCA  
     SECONDARY STRUCTURE . .    5.791      0.319       0.186     60    75.9    79     ERRCA  
     SURFACE . . . . . . . .    8.709      0.386       0.195     56    61.5    91     ERRCA  
     BURIED  . . . . . . . .    5.671      0.317       0.193     48    71.6    67     ERRCA  
 (MC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    7.310      0.348       0.189    515    65.9   782     ERRMC  
     SECONDARY STRUCTURE . .    5.783      0.310       0.176    297    75.8   392     ERRMC  
     SURFACE . . . . . . . .    8.716      0.384       0.196    277    61.4   451     ERRMC  
     BURIED  . . . . . . . .    5.674      0.306       0.181    238    71.9   331     ERRMC  
 (SC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    7.417      0.346       0.184     99    15.6   634     ERRSC  
     RELIABLE SIDE CHAINS  .    7.417      0.346       0.184     99    18.8   528     ERRSC  
     SECONDARY STRUCTURE . .    5.765      0.305       0.168     57    17.9   318     ERRSC  
     SURFACE . . . . . . . .    8.909      0.382       0.193     53    13.4   395     ERRSC  
     BURIED  . . . . . . . .    5.698      0.305       0.174     46    19.2   239     ERRSC  
 (ALL) ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    7.310      0.348       0.189    515    40.7  1266     ERRALL 
     SECONDARY STRUCTURE . .    5.783      0.310       0.176    297    46.8   634     ERRALL 
     SURFACE . . . . . . . .    8.716      0.384       0.196    277    36.5   759     ERRALL 
     BURIED  . . . . . . . .    5.674      0.306       0.181    238    46.9   507     ERRALL 
 
 
 
DISTANCES: Percent of total atoms where distance (target <-> model) in global 
           superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms 
            D < 1     D < 2     D < 3     D < 5    D < 10      NP      TN 
CA  (N)         1         1         3         6        40     104     158   DISTCA 
CA  (P)      0.63      0.63      1.90      3.80     25.32             158   DISTCA 
CA  (RMS)    0.81      0.81      2.21      3.14      7.20                   DISTCA 
 
ALL (N)         2         4        14        30       198     515    1266   DISTALL 
ALL (P)      0.16      0.32      1.11      2.37     15.64            1266   DISTALL 
ALL (RMS)    0.81      1.32      2.28      3.36      7.31                   DISTALL 
 
 
 
 
END of the results output 
