PFRMAT AL 
TARGET T0078 
AUTHOR 3707-4066-9021 
REMARK FORESST ordered by Z scores, length ratios and J scores using 
REMARK SIMPA with homologues as secondary structure predictions. 
METHOD FORESST is a fold recognition method based on secondary structure 
METHOD predictions and hidden Markov models of observed secondary structures. 
METHOD Di Francesco V, Garnier J and Munson PJ., 1997, Protein Topology  
METHOD recognition METHOD from secondary structure sequences: application  
METHOD of the hidden Markov model to the alpha class proteins.  
METHOD J. Mol. Biol.267:446-463. 
MODEL  1 
PARENT 1tib 
M   1    E   1 
G   2    V   2 
Q   3    Q   4 
A   4    D   5 
L   5    L   6 
K   6    F   7 
N   7    N   8 
L   8    Q   9 
L   9    F  10 
T  10    N  11 
L  11    L  12 
L  12    F  13 
N  13    A  14 
L  14    Q  15 
E  15    Y  16 
K  16    S  17 
I  17    A  18 
E  18    A  19 
E  19    A  20 
G  20    Y  21 
L  21    C  22 
F  22    G  23 
R  23    K  24 
G  24    N  25 
Q  25    N  26 
S  26    D  27 
E  27    A  28 
D  28    P  29 
L  29    A  30 
G  30    G  31 
L  31    T  32 
R  32    N  33 
Q  33    I  34 
V  34    T  35 
F  35    C  36 
G  36    T  37 
G  37    G  38 
Q  38    N  39 
V  39    P  42 
V  40    E  43 
G  41    V  44 
Q  42    E  45 
A  43    K  46 
V  57    A  47 
H  58    D  48 
S  59    A  49 
F  60    T  50 
H  61    F  51 
S  62    L  52 
Y  63    Y  53 
F  64    S  54 
L  65    F  55 
R  66    E  56 
P  67    D  57 
G  68    S  58 
D  69    G  59 
S  70    V  60 
K  71    G  61 
K  72    D  62 
P  73    V  63 
I  74    T  64 
I  75    G  65 
Y  76    F  66 
D  77    L  67 
V  78    A  68 
E  79    L  69 
T  80    D  70 
L  81    N  71 
R  82    T  72 
D  83    N  73 
G  84    R  81 
N  85    G  82 
S  86    S  83 
F  87    R  84 
S  88    S  85 
A  89    I  86 
R  90    E  87 
R  91    N  88 
V  92    W  89 
A  93    I  90 
A  94    G  91 
I  95    N  92 
Q  96    L  93 
N  97    N  94 
G  98    F  95 
K  99    D  96 
P 100    L  97 
I 101    K  98 
F 102    E  99 
Y 103    I 100 
Q 118    N 101 
K 119    D 102 
T 120    I 103 
M 121    C 104 
P 122    S 105 
S 123    G 106 
A 124    C 107 
P 125    R 108 
A 126    G 109 
P 127    H 110 
D 128    D 111 
G 129    G 112 
L 130    F 113 
P 131    T 114 
S 132    S 115 
E 133    S 116 
T 134    W 117 
Q 135    R 118 
I 136    S 119 
A 137    V 120 
Q 138    A 121 
S 139    D 122 
L 140    T 123 
A 141    L 124 
H 142    R 125 
L 143    Q 126 
L 144    K 127 
P 145    V 128 
P 146    E 129 
V 147    D 130 
L 148    A 131 
K 149    V 132 
D 150    R 133 
K 151    E 134 
F 152    H 135 
I 153    P 136 
C 154    D 137 
D 155    Y 138 
R 156    R 139 
P 157    V 140 
L 158    V 141 
E 159    F 142 
V 160    T 143 
R 161    G 144 
P 162    H 145 
V 163    S 146 
E 164    L 147 
F 165    G 148 
H 166    G 149 
H 172    R 160 
V 173    G 161 
A 174    N 162 
E 175    G 163 
P 176    Y 164 
H 177    D 165 
R 178    I 166 
Q 179    D 167 
V 180    V 168 
W 181    F 169 
I 182    S 170 
R 183    Y 171 
A 184    G 172 
N 185    A 173 
G 186    P 174 
S 187    R 175 
V 188    V 176 
P 189    G 177 
D 190    N 178 
D 191    R 179 
L 192    A 180 
R 193    F 181 
V 194    A 182 
H 195    E 183 
Q 196    F 184 
Y 197    L 185 
L 198    T 186 
L 199    V 187 
G 200    Q 188 
Y 201    T 189 
A 202    G 190 
S 203    G 191 
D 204    L 193 
L 205    Y 194 
N 206    R 195 
F 207    I 196 
L 208    T 197 
P 209    H 198 
V 210    T 199 
A 211    N 200 
L 212    D 201 
Q 213    I 202 
P 214    V 203 
H 215    P 204 
G 216    R 205 
I 217    L 206 
G 218    P 207 
F 219    P 208 
L 220    R 209 
E 221    E 210 
P 222    F 211 
G 223    G 212 
I 224    Y 213 
T 228    S 214 
I 229    H 215 
D 230    S 216 
H 231    S 217 
S 232    P 218 
M 233    E 219 
W 234    Y 220 
F 235    W 221 
H 236    I 222 
R 237    K 223 
P 238    S 224 
F 239    G 225 
N 240    T 226 
L 241    L 227 
N 242    N 233 
E 243    D 234 
W 244    I 235 
L 245    V 236 
L 246    K 237 
Y 247    I 238 
S 248    E 239 
V 249    G 240 
E 250    I 241 
S 251    D 242 
T 252    A 243 
S 253    T 244 
A 254    G 245 
S 255    G 246 
S 256    N 247 
A 257    Q 249 
R 258    P 250 
G 259    N 251 
F 260    I 252 
V 261    L 259 
R 262    W 260 
G 263    Y 261 
E 264    F 262 
F 265    G 263 
Y 266    L 264 
T 267    I 265 
Q 268    G 266 
D 269    T 267 
H 285    C 268 
N 286    L 269 
TER 
END 
