PFRMAT     AL 
TARGET     T0078 
AUTHOR     7545-6133-3082 
REMARK      
METHOD   blastp was used to find homologous sequences of which a multiple   
METHOD   sequences alignment was build and used as seed for HMMer. The 
METHOD   resulting hmm was used to search against a version of pdb which 
METHOD   only contains proteins of less than 90% homology. No significant 
METHOD   hits were found during this procedure. 
METHOD   A specifically developed neural network scored all alignments on 
METHOD   basis of their secondary structure overlap. None of the alignments 
METHOD   achieved good scores and the top ten scores showed random folds. 
METHOD   Consequently the sequence was split into two overlapping parts 
METHOD   which were then run through the procedure individually. 
METHOD   However, again no clear hit could be found. Thus it was concluded 
METHOD   that the fold of this target is not yet present in the database 
METHOD   (or we didn't find the correct domain-boundaries) 
MODEL 1 
PARENT NONE 
TER 
END 
