PFRMAT AL 
TARGET T0072 
AUTHOR 6795-8227-6214 
REMARK CASP3 Prediction by Michael Bass on 8/17/98 
METHOD AmgenThread.  Gapped alignments with no end penalties. 
METHOD Uses residue-based statistical potentials.  Specific 
METHOD potentials include exposed surface area, inter-residue 
METHOD distance-dependent contacts, and backbone dihedral 
METHOD angle preferences.  The search database is against the 
METHOD Hobohm PDB-SELECT list, Oct 97, at the 45% identity or 
METHOD less level containing 1,247 structures. 
METHOD This is an automatic prediction method. 
REMARK Results from database search: 
REMARK Sequence "t0072" has a significant match 
REMARK pdb1aac       6.139     0.263    15.435  MOLECULE: AMICYANIN; 
REMARK                                          SCOP: Beta; Cupredoxins 
REMARK pdb1plc       4.618     0.211    13.544  PLASTOCYANIN (CU2+, PH 6.0) 
REMARK                                          SCOP: Beta; Cupredoxins 
REMARK pdb1hlc_A     4.229     0.197     1.108  LECTIN (HUMAN L-14-II) COMPLEXED WITH LACTOSE 
REMARK                                          SCOP: Beta; ConA-like lectins/glucanases 
REMARK pdb1nkl       4.075     0.192     1.199  MOLECULE: NK-LYSIN; 
REMARK                                          SCOP: Alpha; Saposin 
REMARK pdb1amm       3.765     0.182    21.337  MOLECULE: GAMMA B-CRYSTALLIN; 
REMARK                                          SCOP: 1-85: Beta; Crystallins/protein S 
REMARK                                          SCOP: 86-174: Beta; Crystallins/protein S 
REMARK pdb1rge_A     3.610     0.176    10.318  MOLECULE: RIBONUCLEASE; 
REMARK                                          SCOP: A+B; Microbal ribonucleases 
REMARK pdb1mng_A     3.587     0.175     1.288  MANGANESE SUPEROXIDE DISMUTASE (E.C.1.15.1.1) COMPLEXED 
REMARK                                          SCOP: 1-92: Alpha; Long alpha-hairpin 
REMARK                                          SCOP: 93-203: A+B; Fe,Mn superoxide dismutase (SOD), C-terminal domain 
REMARK pdb1rga       3.507     0.173    -7.467  RIBONUCLEASE T1 (E.C.3.1.27.3) ISOZYME COMPLEX WITH 
REMARK                                          SCOP: A+B; Microbal ribonucleases 
REMARK pdb1kpt_A     3.476     0.172    -3.997  MOLECULE: KP4 TOXIN; 
REMARK                                          SCOP: A+B; Virally encoded KP4 toxin 
MODEL  1 
REMARK Sequence alignment follows: 
REMARK t0072        .....................RLSWYDPDFQARLTRSNSKCQGQLEVYLK 
REMARK                                    |:. |: |  .... : | : .|#| :| 
REMARK pdb1aac      DKATIPSESPFAAAEVADGAIVVDIAKMKY..ETPELHVKVGDTVTWINR 
REMARK  
REMARK t0072        DGWHMVCSQSWGRSSKQWEDPSQASK.VCQRLNCGVPLSLGPFLVTYTP. 
REMARK                 .| |. : |. :|. #:|....:  |  |||# |  | :|:#.| |  
REMARK pdb1aac      EAMPHNVHFVAGVLGEAALKGPMMKKEQAYSLTFTEAGTYDYHCTPHPFM 
REMARK  
REMARK t0072        QSSIICYGQLGSFSNCSHSRNDMCHSLGLTCLE 
REMARK              :.||.|                            
REMARK pdb1aac      RGKVVVE.......................... 
REMARK  
PARENT 1aac 
R 1  V 22 
L 2  V 23 
S 3  D 24 
W 4  I 25 
Y 5  A 26 
D 6  K 27 
P 7  M 28 
D 8  K 29 
F 9  Y 30 
R 12  E 31 
L 13  T 32 
T 14  P 33 
R 15  E 34 
S 16  L 35 
N 17  H 36 
S 18  V 37 
K 19  K 38 
C 20  V 39 
Q 21  G 40 
G 22  D 41 
Q 23  T 42 
L 24  V 43 
E 25  T 44 
V 26  W 45 
Y 27  I 46 
L 28  N 47 
K 29  R 48 
D 30  E 49 
G 31  A 50 
W 32  M 51 
H 33  P 52 
M 34  H 53 
V 35  N 54 
C 36  V 55 
S 37  H 56 
Q 38  F 57 
S 39  V 58 
W 40  A 59 
G 41  G 60 
R 42  V 61 
S 43  L 62 
S 44  G 63 
K 45  E 64 
Q 46  A 65 
W 47  A 66 
E 48  L 67 
D 49  K 68 
P 50  G 69 
S 51  P 70 
Q 52  M 71 
A 53  M 72 
S 54  K 73 
K 55  K 74 
V 56  Q 76 
C 57  A 77 
Q 58  Y 78 
R 59  S 79 
L 60  L 80 
N 61  T 81 
C 62  F 82 
G 63  T 83 
V 64  E 84 
P 65  A 85 
L 66  G 86 
S 67  T 87 
L 68  Y 88 
G 69  D 89 
P 70  Y 90 
F 71  H 91 
L 72  C 92 
V 73  T 93 
T 74  P 94 
Y 75  H 95 
T 76  P 96 
P 77  F 97 
Q 78  R 99 
S 79  G 100 
S 80  K 101 
I 81  V 102 
I 82  V 103 
C 83  V 104 
Y 84  E 105 
TER 
END 
