PFRMAT     AL 
TARGET     T0072 
AUTHOR     7545-6133-3082 
REMARK 
METHOD   blastp was used to find homologous sequences of which a multiple 
METHOD   sequences alignment was build and used as seed for HMMer. The 
METHOD   resulting hmm was used to search against a version of pdb which 
METHOD   only contains proteins of less than 90% homology. No significant 
METHOD   hits were found during this procedure. 
METHOD   A specifically developed neural network scored all alignments on 
METHOD   basis of their secondary structure overlap. 
METHOD   All scores achieved were fairly low, but among the top ten scores 
METHOD   four proteins with immunoglobuline-like fold were present. Thus 
METHOD   it was decided to take the one with the highest score and use 
METHOD   it as a parent for the model. 
METHOD   The alignment looks quite dreadful, though, and is probably 
METHOD   completely wrong. 
MODEL 1 
PARENT 1ivlA 
Q       10      D       1 
A       11      I       2 
R       12      E       3 
L       13      L       4 
T       14      T       5 
R       15      Q       6 
S       16      S       7 
N       17      P       8 
G       22      A       9 
Q       23      T       10 
L       24      L       11 
E       25      S       12 
V       26      V       13 
Y       27      T       14 
L       28      P       15 
K       29      G       16 
D       30      N       17 
G       31      S       18 
W       32      V       19 
H       33      S       20 
M       34      I       21 
V       35      S       22 
C       36      C       23 
S       37      R       24 
Q       38      A       25 
S       39      S       26 
W       40      Q       27 
G       41      S       28 
R       42      I       29 
S       43      G       30 
S       44      N       31 
K       45      R       32 
Q       46      L       33 
W       47      F       34 
V       56      W       35 
C       57      Y       36 
Q       58      Q       37 
R       59      Q       38 
L       60      K       39 
N       61      S       40 
C       62      H       41 
G       63      E       42 
V       64      S       43 
P       65      P       44 
L       66      R       45 
S       67      L       46 
L       68      L       47 
G       69      A       51 
P       70      S       52 
F       71      Q       53 
L       72      S       54 
V       73      I       55 
T       74      S       56 
Y       75      G       57 
T       76      I       58 
P       77      P       59 
Q       78      S       60 
S       79      R       61 
S       80      F       62 
I       81      S       63 
I       82      S       65 
C       83      G       66 
Y       84      S       67 
G       85      G       68 
Q       86      T       69 
L       87      D       70 
G       88      F       71 
S       89      T       72 
F       90      L       73 
S       91      S       74 
N       92      I       75 
C       93      N       76 
S       94      S       77 
H       95      V       78 
S       96      E       79 
L       109     T       80 
E       110     E       81 
TER 
END 
