PFRMAT AL 
TARGET T0069 
AUTHOR 6795-8227-6214 
REMARK CASP3 Prediction by Michael Bass on 8/17/98 
METHOD AmgenThread.  Gapped alignments with no end penalties. 
METHOD Uses residue-based statistical potentials.  Specific 
METHOD potentials include exposed surface area, inter-residue 
METHOD distance-dependent contacts, and backbone dihedral 
METHOD angle preferences.  The search database is against the 
METHOD Hobohm PDB-SELECT list, Oct 97, at the 45% identity or 
METHOD less level containing 1,247 structures. 
METHOD This is an automatic prediction method. 
REMARK Results from database search: 
REMARK Sequence "t0069" has a significant match 
REMARK pdb1afb_1    13.607     0.482    68.949  MOLECULE: MANNOSE-BINDING PROTEIN-A; 
REMARK                                          SCOP: 73-104,2:73-104,3:73-104: Alpha; Oligomers of long helices 
REMARK                                          SCOP: 105-221: A+B; C-type lectin 
REMARK pdb1nfn       4.634     0.196     1.914  MOLECULE: APOLIPOPROTEIN E3; 
REMARK                                          SCOP: Alpha; Four-helical up-and-down bundle 
REMARK pdb1esl       4.365     0.187    16.346  E-SELECTIN (LECTIN AND EGF DOMAINS, RESIDUES 1 - 157) 
REMARK                                          SCOP: 1-118: A+B; C-type lectin 
REMARK                                          SCOP: 119-156: Small; EGF-like module 
REMARK pdb1lit       4.316     0.186    14.126  MOLECULE: LITHOSTATHINE; 
REMARK                                          SCOP: A+B; C-type lectin-like 
REMARK pdb1ncx       4.029     0.177    -3.417  MOLECULE: TROPONIN C; 
REMARK                                          SCOP: Alpha; EF-hand 
REMARK pdb1hng_A     3.875     0.172    11.201  CD2 (RAT) 
REMARK                                          SCOP: 2-99: Beta; Immunoglobulin-like beta-sandwich 
REMARK                                          SCOP: 101-176: Beta; Immunoglobulin-like beta-sandwich 
REMARK pdb1mng_A     3.854     0.171    -3.026  MANGANESE SUPEROXIDE DISMUTASE (E.C.1.15.1.1) COMPLEXED 
REMARK                                          SCOP: 1-92: Alpha; Long alpha-hairpin 
REMARK                                          SCOP: 93-203: A+B; Fe,Mn superoxide dismutase (SOD), C-terminal domain 
REMARK pdb256b_A     3.820     0.170     8.337  CYTOCHROME $B562 (OXIDIZED) 
REMARK                                          SCOP: Alpha; Four-helical up-and-down bundle 
MODEL  1 
REMARK Sequence alignment follows: 
REMARK t0069        AEANALKQRVTILDGHLRRFQNAFSQYKKAVLFPDGQAVGEKIFKTAGAV 
REMARK                  ..::.:  :. .:::.. :. . ::::|...| . |..|:#.:| # 
REMARK pdb1afb_1    ....AIEVKLANMEAEINTLKSKLELTNKLHAFSMGKKSGKKFFVTNHER 
REMARK  
REMARK t0069        KSYSDAEQLCREAKGQLASPRSSAENEAVTQMVRAQEKNAYLSMNDISTE 
REMARK              #:::::::.|.|:|| ::  ||  : :.: :::.    :::|.| .   : 
REMARK pdb1afb_1    MPFSKVKALCSELRGTVAIPRNAEENKAIQEVAK...TSAFLGITDEVTE 
REMARK  
REMARK t0069        GRFTYPTGEILVYSNWADGEPNNSDE...GQPENCVEIFPDGKWNDVPCS 
REMARK              |.|.|. |.#|#|:|: .| |||.||   |:.#|||#| :|| |  |:|| 
REMARK pdb1afb_1    GQFMYVTGGRLTYSNWKKDQPDDWYGHGLGGGEDCVTIVDNGLWNDISCQ 
REMARK  
REMARK t0069        KQLLVICEF.. 
REMARK                # ||| |   
REMARK pdb1afb_1    ASHTAVCEFPA 
REMARK  
PARENT 1afb_1 
A 5  A 73 
L 6  I 74 
K 7  E 75 
Q 8  V 76 
R 9  K 77 
V 10  L 78 
T 11  A 79 
I 12  N 80 
L 13  M 81 
D 14  E 82 
G 15  A 83 
H 16  E 84 
L 17  I 85 
R 18  N 86 
R 19  T 87 
F 20  L 88 
Q 21  K 89 
N 22  S 90 
A 23  K 91 
F 24  L 92 
S 25  E 93 
Q 26  L 94 
Y 27  T 95 
K 28  N 96 
K 29  K 97 
A 30  L 98 
V 31  H 99 
L 32  A 100 
F 33  F 101 
P 34  S 102 
D 35  M 103 
G 36  G 104 
Q 37  K 105 
A 38  K 106 
V 39  S 107 
G 40  G 108 
E 41  K 109 
K 42  K 110 
I 43  F 111 
F 44  F 112 
K 45  V 113 
T 46  T 114 
A 47  N 115 
G 48  H 116 
A 49  E 117 
V 50  R 118 
K 51  M 119 
S 52  P 120 
Y 53  F 121 
S 54  S 122 
D 55  K 123 
A 56  V 124 
E 57  K 125 
Q 58  A 126 
L 59  L 127 
C 60  C 128 
R 61  S 129 
E 62  E 130 
A 63  L 131 
K 64  R 132 
G 65  G 133 
Q 66  T 134 
L 67  V 135 
A 68  A 136 
S 69  I 137 
P 70  P 138 
R 71  R 139 
S 72  N 140 
S 73  A 141 
A 74  E 142 
E 75  E 143 
N 76  N 144 
E 77  K 145 
A 78  A 146 
V 79  I 147 
T 80  Q 148 
Q 81  E 149 
M 82  V 150 
V 83  A 151 
R 84  K 152 
K 88  T 153 
N 89  S 154 
A 90  A 155 
Y 91  F 156 
L 92  L 157 
S 93  G 158 
M 94  I 159 
N 95  T 160 
D 96  D 161 
I 97  E 162 
S 98  V 163 
T 99  T 164 
E 100  E 165 
G 101  G 166 
R 102  Q 167 
F 103  F 168 
T 104  M 169 
Y 105  Y 170 
P 106  V 171 
T 107  T 172 
G 108  G 173 
E 109  G 174 
I 110  R 175 
L 111  L 176 
V 112  T 177 
Y 113  Y 178 
S 114  S 179 
N 115  N 180 
W 116  W 181 
A 117  K 182 
D 118  K 183 
G 119  D 184 
E 120  Q 185 
P 121  P 186 
N 122  D 187 
N 123  D 188 
S 124  W 189 
D 125  Y 190 
E 126  G 191 
G 127  G 195 
Q 128  G 196 
P 129  G 197 
E 130  E 198 
N 131  D 199 
C 132  C 200 
V 133  V 201 
E 134  T 202 
I 135  I 203 
F 136  V 204 
P 137  D 205 
D 138  N 206 
G 139  G 207 
K 140  L 208 
W 141  W 209 
N 142  N 210 
D 143  D 211 
V 144  I 212 
P 145  S 213 
C 146  C 214 
S 147  Q 215 
K 148  A 216 
Q 149  S 217 
L 150  H 218 
L 151  T 219 
V 152  A 220 
I 153  V 221 
C 154  C 222 
E 155  E 223 
F 156  F 224 
TER 
END 
