PFRMAT AL 
TARGET t0062 
AUTHOR 8120-3487-1357 
REMARK Matrix Used: BS_30_25%  
REMARK Alignment Method Used: Quasi-Global Dynamic Programming 
METHOD Sequence-Structure alignment based on the environments 
METHOD published in: Deerfield, Holland-Minkley, Geigel, and  
METHOD Nicholas 1997. "Classification of the Environment of  
METHOD Protein Residues" J. Prot. Chem. 16:441-446. 
METHOD  
METHOD This test uses our latest (unpublished) environment  
METHOD classifications and extentions. 
MODEL  2 
PARENT 5at1_B 
T    1 N  105 
T    2 V  106 
L    3 L  107 
S    4 V  108 
C    5 C  109 
K    6 P  110 
V    7 N  111 
T    8 S  112 
S    9 N  113 
V   10 C  114 
E   11 I  115 
A   12 S  116 
I   13 H  117 
T   14 A  118 
I   22 E  119 
V   23 P  120 
P   24 V  121 
D   25 S  122 
A   26 S  123 
A   27 S  124 
F   28 F  125 
S   29 A  126 
F   30 V  127 
R   31 R  128 
A   32 K  129 
G   33 R  130 
Q   34 A  131 
Y   35 N  132 
L   36 D  133 
M   37 I  134 
V   38 A  135 
V   39 L  136 
M   40 K  137 
D   41 C  138 
E   42 K  139 
R   43 Y  140 
D   44 C  141 
K   45 E  142 
R   46 K  143 
P   47 E  144 
F   48 F  145 
S   49 S  146 
M   50 H  147 
A   51 N  148 
S   52 V  149 
T   53 V  150 
P   54 L  151 
D   55 A  152 
E   56 N  153 
TER 
END 
