PFRMAT AL 
TARGET T0062 
AUTHOR 6795-8227-6214 
REMARK CASP3 Prediction by Michael Bass on 8/21/98 
METHOD AmgenThread.  Gapped alignments with no end penalties. 
METHOD Uses residue-based statistical potentials.  Specific 
METHOD potentials include exposed surface area, inter-residue 
METHOD distance-dependent contacts, and backbone dihedral 
METHOD angle preferences.  The search database is against the 
METHOD Hobohm PDB-SELECT list, Oct 97, at the 45% identity or 
METHOD less level containing 1,247 structures. 
METHOD This is an automatic prediction method. 
REMARK Results from database search: 
REMARK Sequence "t0062" has a possible match 
REMARK pdb1fdr       5.129     0.188    22.478  MOLECULE: FLAVODOXIN REDUCTASE; 
REMARK                                          SCOP: 2-100: Beta; Reductase/isomerase/elongation factor common domain 
REMARK                                          SCOP: 101-248: A/B; Ferredoxin reductase-like, C-terminal NADP-linked domain 
REMARK pdb1dts       4.277     0.163   -16.243  DETHIOBIOTIN SYNTHASE (E.C.6.3.3.3) 
REMARK                                          SCOP: A/B; P-loop containing nucleotide triphosphate hydrolases 
REMARK pdb1nar       3.685     0.146    13.737  NARBONIN 
REMARK                                          SCOP: A/B; beta/alpha (TIM)-barrel 
REMARK pdb1nsj       3.662     0.146    -0.552  MOLECULE: PHOSPHORIBOSYL ANTHRANILATE ISOMERASE; 
REMARK                                          SCOP: A/B; beta/alpha (TIM)-barrel 
REMARK pdb2tct       3.616     0.144    17.106  MOLECULE: TETRACYCLINE REPRESSOR; 
REMARK                                          SCOP: Alpha; Tetracyclin repressor (Tet-repressor, TetR) 
REMARK pdb1isc_A     3.548     0.142    -6.722  IRON(III) SUPEROXIDE DISMUTASE (E.C.1.15.1.1) COMPLEXED 
REMARK                                          SCOP: 1-82: Alpha; Long alpha-hairpin 
REMARK                                          SCOP: 83-192: A+B; Fe,Mn superoxide dismutase (SOD), C-terminal domain 
REMARK pdb1ukz       3.531     0.142    -8.821  URIDYLATE KINASE (E.C.2.7.4.-) COMPLEXED WITH ADP AND AMP 
REMARK                                          SCOP: A/B; P-loop containing nucleotide triphosphate hydrolases 
REMARK pdb1ofv       3.506     0.141    -0.033  FLAVODOXIN (OXIDIZED FORM) 
REMARK                                          SCOP: A/B; Flavodoxin-like 
REMARK pdb1mng_A     3.408     0.138    -4.528  MANGANESE SUPEROXIDE DISMUTASE (E.C.1.15.1.1) COMPLEXED 
REMARK                                          SCOP: 1-92: Alpha; Long alpha-hairpin 
MODEL  1 
REMARK Sequence alignment follows: 
REMARK t0062        .TTLSCKVTSVEAITDTVYRVRI.VPDAAFSFRAGQYLMVVMDERDKR.. 
REMARK               . | ||||:|.  |.|:| | | ||  :#::  | .  |.|::   |   
REMARK pdb1fdr      ADWVTGKVTKVQNWTDALFSLTVHAP..VLPFTAGQFTKLGLEIXXXRVQ 
REMARK  
REMARK t0062        .PFSMASTPDEKGFIELHIGASEINLYAKAVMDRILKDHQI.VVDIPHGE 
REMARK               .|.: . ..:| | .|||## |#  |.. |:: | .. :| |   :.|: 
REMARK pdb1fdr      RAYSYVNSPDNPDL.EFYLVTVPDGKLSPRLAA.LKPGDEVQVVSEAAGF 
REMARK  
REMARK t0062        AWLRDDEERPMILIAGGTGFSYARSILLTALARNPN....RDITIYWGGR 
REMARK               .:||#..:  |||.. .||| :   :| :| :| |    : |.|..#.: 
REMARK pdb1fdr      FVLDEVPHCETLWMLA.TGTAIGP..YLSILRLGKDLDRFKNLVLVHAAR 
REMARK  
REMARK t0062        EEQHLYDLCELEALSLKHPGLQVVP.VVEQPE.AGW.RGRTGTVLT..AV 
REMARK              : :: .| # ||.|  . :| # |. || |..  |: .|.  .:|   .| 
REMARK pdb1fdr      YAADLSYLPLMQELEKRYEGKLRIQTVVSRETAAGSLTGRIPALIESGEL 
REMARK  
REMARK t0062        LQDHG.TLAEHDIYIA..GRFEMAKIARDLFCSERNAREDRLFGDAFAFI 
REMARK              ::  | .| : .:||:  |:.|::| : ::|# :|| || .#   # ..: 
REMARK pdb1fdr      ESTIGLPMNKETSHVMLCGNPQMVRDTQQLLKETRQMTKHLRRRPGHMTA 
REMARK  
REMARK t0062        .... 
REMARK                   
REMARK pdb1fdr      EHYW 
REMARK  
PARENT 1fdr 
T 1  D 3 
T 2  W 4 
L 3  V 5 
S 4  T 6 
C 5  G 7 
K 6  K 8 
V 7  V 9 
T 8  T 10 
S 9  K 11 
V 10  V 12 
E 11  Q 13 
A 12  N 14 
I 13  W 15 
T 14  T 16 
D 15  D 17 
T 16  A 18 
V 17  L 19 
Y 18  F 20 
R 19  S 21 
V 20  L 22 
R 21  T 23 
I 22  V 24 
V 23  A 26 
P 24  P 27 
A 27  V 28 
F 28  L 29 
S 29  P 30 
F 30  F 31 
R 31  T 32 
A 32  A 33 
G 33  G 34 
Q 34  Q 35 
Y 35  F 36 
L 36  T 37 
M 37  K 38 
V 38  L 39 
V 39  G 40 
M 40  L 41 
D 41  E 42 
E 42  I 43 
R 46  R 47 
P 47  A 51 
F 48  Y 52 
S 49  S 53 
M 50  Y 54 
A 51  V 55 
S 52  N 56 
T 53  S 57 
P 54  P 58 
D 55  D 59 
E 56  N 60 
K 57  P 61 
G 58  D 62 
F 59  L 63 
E 61  E 64 
L 62  F 65 
H 63  Y 66 
I 64  L 67 
G 65  V 68 
A 66  T 69 
S 67  V 70 
E 68  P 71 
I 69  D 72 
N 70  G 73 
L 71  K 74 
Y 72  L 75 
A 73  S 76 
K 74  P 77 
A 75  R 78 
V 76  L 79 
M 77  A 80 
D 78  A 81 
I 80  L 82 
L 81  K 83 
K 82  P 84 
D 83  G 85 
H 84  D 86 
Q 85  E 87 
I 86  V 88 
V 87  V 90 
V 88  V 91 
D 89  S 92 
I 90  E 93 
P 91  A 94 
H 92  A 95 
G 93  G 96 
E 94  F 97 
A 95  F 98 
W 96  V 99 
L 97  L 100 
R 98  D 101 
D 99  E 102 
D 100  V 103 
E 101  P 104 
E 102  H 105 
R 103  C 106 
P 104  E 107 
M 105  T 108 
I 106  L 109 
L 107  W 110 
I 108  M 111 
A 109  L 112 
G 110  A 113 
T 112  T 114 
G 113  G 115 
F 114  T 116 
S 115  A 117 
Y 116  I 118 
A 117  G 119 
R 118  P 120 
L 121  Y 121 
L 122  L 122 
T 123  S 123 
A 124  I 124 
L 125  L 125 
A 126  R 126 
R 127  L 127 
N 128  G 128 
P 129  K 129 
N 130  D 130 
R 131  K 135 
D 132  N 136 
I 133  L 137 
T 134  V 138 
I 135  L 139 
Y 136  V 140 
W 137  H 141 
G 138  A 142 
G 139  A 143 
R 140  R 144 
E 141  Y 145 
E 142  A 146 
Q 143  A 147 
H 144  D 148 
L 145  L 149 
Y 146  S 150 
D 147  Y 151 
L 148  L 152 
C 149  P 153 
E 150  L 154 
L 151  M 155 
E 152  Q 156 
A 153  E 157 
L 154  L 158 
S 155  E 159 
L 156  K 160 
K 157  R 161 
H 158  Y 162 
P 159  E 163 
G 160  G 164 
L 161  K 165 
Q 162  L 166 
V 163  R 167 
V 164  I 168 
P 165  Q 169 
V 166  V 171 
V 167  V 172 
E 168  S 173 
Q 169  R 174 
P 170  E 175 
E 171  T 176 
A 172  A 178 
G 173  G 179 
W 174  S 180 
R 175  T 182 
G 176  G 183 
R 177  R 184 
T 178  I 185 
G 179  P 186 
T 180  A 187 
V 181  L 188 
L 182  I 189 
T 183  E 190 
A 184  E 193 
V 185  L 194 
L 186  E 195 
Q 187  S 196 
D 188  T 197 
H 189  I 198 
G 190  G 199 
T 191  P 201 
L 192  M 202 
A 193  N 203 
E 194  K 204 
H 195  E 205 
D 196  T 206 
I 197  S 207 
Y 198  H 208 
I 199  V 209 
A 200  M 210 
G 201  G 213 
R 202  N 214 
F 203  P 215 
E 204  Q 216 
M 205  M 217 
A 206  V 218 
K 207  R 219 
I 208  D 220 
A 209  T 221 
R 210  Q 222 
D 211  Q 223 
L 212  L 224 
F 213  L 225 
C 214  K 226 
S 215  E 227 
E 216  T 228 
R 217  R 229 
N 218  Q 230 
A 219  M 231 
R 220  T 232 
E 221  K 233 
D 222  H 234 
R 223  L 235 
L 224  R 236 
F 225  R 237 
G 226  R 238 
D 227  P 239 
A 228  G 240 
F 229  H 241 
A 230  M 242 
F 231  T 243 
I 232  A 244 
TER 
END 
