PFRMAT AL 
TARGET T0062 
AUTHOR 5658-5421-3866 
REMARK prediction made by An-Suei Yang and Barry Honig 
REMARK Columbia University, Department of Biochemistry 
METHOD prediction made by PrISM, Protein Informatics System for Modeling 
METHOD protein structure database obtained by parsing PDB entries into domains 
METHOD sequence database obtained from SWISS-PROT 
METHOD 2nd prediction: neuro network algorithm in PrISM plus threading 
METHOD pairwise alignment: dynamic programming (DP) algorithm 
METHOD multiple alignment: progressive multi-aligning algorithm 
METHOD structure alignment: double DP algorithm 
METHOD plus rigid body superimposition 
METHOD sequence-structure alignment: variation of DP algorithm  
METHOD plus sequence-structure fitness function 
METHOD modeling: fragmental modeling based on a multiple-aligned parents 
METHOD refinement: X-PLOR minimization and simulated annealing 
MODEL  1 
PARENT 2cnd   
T   1    G  11  
T   2    R  12  
L   3    I  13  
S   4    H  14  
C   5    C  15  
K   6    R  16  
V   7    L  17  
T   8    V  18  
S   9    A  19  
V  10    K  20  
E  11    K  21  
A  12    E  22  
I  13    L  23  
T  14    S  24  
D  15    R  25  
T  16    D  26  
V  17    V  27  
Y  18    R  28  
R  19    L  29  
V  20    F  30  
R  21    R  31  
I  22    F  32  
V  23    S  33  
P  24    L  34  
D  25    P  35  
A  26    Q  39  
A  27    V  40  
F  28    L  41  
S  29    G  42  
F  30    L  43  
R  31    P  44  
A  32    I  45  
G  33    G  46  
Q  34    K  47  
Y  35    H  48  
L  36    I  49  
M  37    F  50  
V  38    V  51  
V  39    C  52  
M  40    A  53  
D  41    T  54  
E  42    I  55  
R  43    L  59  
D  44    C  60  
K  45    M  61  
R  46    R  62  
P  47    A  63  
F  48    Y  64  
S  49    T  65  
M  50    P  66  
A  51    T  67  
S  52    S  68  
T  53    M  69  
P  54    V  70  
D  55    D  71  
E  56    E  72  
K  57    I  73  
G  58    G  74  
F  59    H  75  
I  60    F  76  
E  61    D  77  
L  62    L  78  
H  63    L  79  
I  64    V  80  
G  65    K  81  
A  66    V  82  
S  67    Y  83  
E  68    F  84  
I  69    K  85  
N  70    N  86  
L  71    E  87  
Y  72    H  88  
A  73    N  93  
K  74    G  94  
A  75    G  95  
V  76    L  96  
M  77    M  97  
D  78    T  98  
R  79    Q  99  
I  80    Y 100  
L  81    L 101  
K  82    D 102  
D  83    S 103  
H  84    L 104  
Q  85    G 107  
I  86    S 108  
V  87    Y 109  
V  88    I 110  
D  89    D 111  
I  90    V 112  
P  91    K 113  
H  92    G 114  
G  93    P 115  
E  94    L 116  
A  95    G 117  
W  96    H 118  
L  97    V 119  
R  98    E 120  
D  99    V 128  
D 100    R 134  
E 101    N 135  
E 102    A 136  
R 103    R 137  
P 104    R 138  
M 105    L 139  
I 106    A 140  
L 107    M 141  
I 108    I 142  
A 109    C 143  
G 110    G 144  
G 111    G 145  
T 112    S 146  
G 113    G 147  
F 114    I 148  
S 115    T 149  
Y 116    P 150  
A 117    M 151  
R 118    Y 152  
S 119    Q 153  
I 120    I 154  
L 121    I 155  
L 122    Q 156  
T 123    A 157  
A 124    V 158  
L 125    L 159  
A 126    R 160  
R 127    D 161  
N 128    Q 162  
P 129    P 163  
N 130    H 166  
R 131    T 167  
D 132    E 168  
I 133    M 169  
T 134    H 170  
I 135    L 171  
Y 136    V 172  
W 137    Y 173  
G 138    A 174  
G 139    N 175  
R 140    R 176  
E 141    T 177  
E 142    E 178  
Q 143    D 179  
H 144    D 180  
L 145    I 181  
Y 146    L 182  
D 147    L 183  
L 148    R 184  
C 149    D 185  
E 150    E 186  
L 151    L 187  
E 152    D 188  
A 153    R 189  
L 154    W 190  
S 155    A 191  
L 156    A 192  
K 157    E 193  
H 158    Y 194  
P 159    P 195  
G 160    R 197  
L 161    L 198  
Q 162    K 199  
V 163    V 200  
V 164    W 201  
P 165    Y 202  
V 166    V 203  
V 167    I 204  
E 168    D 205  
Q 169    Q 206  
P 170    V 207  
E 171    K 208  
A 172    P 210  
G 173    G 213  
W 174    W 214  
R 175    K 215  
G 176    Y 216  
R 177    S 217  
T 178    V 218  
G 179    G 219  
T 180    F 220  
V 181    V 221  
L 182    T 222  
T 183    E 223  
A 184    A 224  
V 185    V 225  
L 186    L 226  
Q 187    R 227  
D 188    E 228  
H 189    H 229  
G 190    V 230  
T 191    P 231  
L 192    E 232  
A 193    G 233  
E 194    D 236  
H 195    T 237  
D 196    L 238  
I 197    A 239  
Y 198    L 240  
I 199    A 241  
A 200    C 242  
G 201    G 243  
R 202    P 244  
F 203    P 245  
E 204    P 246  
M 205    M 247  
A 206    I 248  
K 207    Q 249  
I 208    F 250  
A 209    A 251  
L 212    I 252  
F 213    S 253  
C 214    P 254  
S 215    N 255  
E 216    L 256  
R 217    E 257  
N 218    K 258  
A 219    M 259  
R 220    K 260  
E 221    Y 261  
L 224    D 262  
F 225    M 263  
G 226    A 264  
D 227    N 265  
A 228    S 266  
F 229    F 267  
A 230    V 268  
F 231    V 269  
I 232    F 270  
TER 
END 
