PFRMAT AL 
TARGET t0051 
AUTHOR 4139-4764-1095 
METHOD 1) Secondary structure was predicted with PHD and Predator. 
METHOD 2) We used a hidden markov model that predicts SCOP 
METHOD    classification based on sequence and secondary structure. 
METHOD 3) We also performed threading, using THREADER2 and taking 
METHOD    secondary structure into account. Since mult. seq. 
METHOD    alignments and the HMM classification at least in 
METHOD    part pointed in the same direction as the threading  
METHOD    prediction, the latter alignment was chosen for the 
METHOD    model.  
MODEL 1 
PARENT 1phb 
M   1	N  10 
E   2	L  11 
L   3	A  12 
K   4	P  13 
N   5	L  14 
K   6	P  15 
K   7	P  16 
W   8	H  17 
T   9	V  18 
D  10	P  19 
E  11	E  20 
E  12	H  21 
F  13	L  22 
H  14	V  23 
K  15	F  24 
Q  16	D  25 
R  17	F  26 
E  18	D  27 
L  21	M  28 
Q  22	Y  29 
Q  23	N  30 
W  24	P  31 
P  25	S  32 
T  26	N  33 
G  27	L  34 
K  28	S  35 
E  29	A  36 
V  30	G  37 
A  35	V  38 
V  36	Q  39 
D  37	E  40 
Y  38	A  41 
L  39	W  42 
K  40	A  43 
K  41	V  44 
I  42	L  45 
P  43	Q  46 
A  44	E  47 
E  45	S  48 
K  46	N  49 
A  49	V  50 
E  50	P  51 
K  51	D  52 
L  52	L  53 
V  53	V  54 
L  54	W  55 
A  55	T  56 
K  56	R  57 
Q  64	C  58 
P  65	N  59 
R  66	G  60 
A  67	G  61 
G  68	H  62 
V  69	W  63 
A  70	I  64 
L  71	A  65 
L  72	T  66 
H  75	R  67 
I  76	G  68 
E  77	Q  69 
L  78	L  70 
L  79	I  71 
R  80	R  72 
Y  81	E  73 
L  82	A  74 
Q  83	Y  75 
D  84	E  76 
E  85	D  77 
G  86	Y  78 
G  87	R  79 
A  88	H  80 
D  89	F  81 
F  90	S  82 
L  91	S  83 
P  92	E  84 
S  93	C  85 
T  94	P  86 
K 116	F  87 
A 117	I  88 
G 118	P  89 
R 119	R  90 
S 120	E  91 
L 121	A  92 
L 122	G  93 
N 123	E  94 
G 124	A  95 
F 125	Y  96 
P 126	D  97 
G 127	F  98 
V 128	I  99 
N 129	P 100 
Y 130	T 101 
G 131	S 102 
V 132	M 103 
K 133	P 106 
G 134	E 107 
C 135	Q 108 
R 136	R 109 
K 137	Q 110 
V 138	F 111 
L 139	R 112 
E 140	A 113 
A 141	L 114 
V 142	A 115 
N 143	N 116 
L 144	Q 117 
P 145	V 118 
L 146	V 119 
Q 147	G 120 
A 148	M 121 
R 149	P 122 
H 150	V 123 
G 151	V 124 
T 152	D 125 
P 153	K 126 
D 154	L 127 
S 155	E 128 
R 156	N 129 
L 157	R 130 
L 158	I 131 
A 159	Q 132 
E 160	E 133 
I 161	L 134 
I 162	A 135 
H 163	C 136 
A 164	S 137 
G 165	L 138 
G 166	I 139 
W 167	E 140 
T 168	S 141 
S 169	L 142 
N 170	R 143 
E 171	P 144 
G 172	Q 145 
G 173	G 146 
N 178	Q 147 
V 179	C 148 
P 180	N 149 
Y 181	F 150 
A 182	T 151 
K 183	E 152 
N 184	D 153 
V 185	Y 154 
T 186	A 155 
S 190	E 156 
L 191	P 157 
L 192	F 158 
D 193	P 159 
W 194	I 160 
Q 195	R 161 
Y 196	I 162 
C 197	F 163 
D 198	M 164 
R 199	L 165 
L 200	L 166 
V 201	A 167 
G 202	G 168 
F 203	L 169 
Y 204	P 170 
P 225	E 171 
P 226	E 172 
S 227	D 173 
M 228	I 174 
S 229	P 175 
N 230	H 176 
A 231	L 177 
V 232	K 178 
G 233	Y 179 
I 234	L 180 
T 235	T 181 
E 236	D 182 
A 237	Q 183 
L 238	M 184 
L 239	T 185 
A 240	R 186 
A 241	P 187 
E 242	D 188 
Q 243	G 189 
G 244	S 190 
D 261	F 193 
I 262	A 194 
A 263	E 195 
A 264	A 196 
L 265	K 197 
R 266	E 198 
C 267	A 199 
L 268	L 200 
E 269	Y 201 
E 270	D 202 
Q 271	Y 203 
T 272	L 204 
N 273	I 205 
E 274	P 206 
Y 275	I 207 
L 276	I 208 
K 277	E 209 
A 278	Q 210 
Y 279	R 211 
G 280	R 212 
Y 281	Q 213 
N 282	K 214 
D 283	T 217 
V 284	D 218 
F 285	A 219 
V 286	I 220 
T 287	S 221 
T 288	I 222 
V 289	V 223 
F 290	A 224 
H 291	N 225 
G 295	G 226 
G 296	Q 227 
F 297	V 228 
P 298	N 229 
Q 299	G 230 
D 300	R 231 
E 301	P 232 
S 302	I 233 
K 303	T 234 
A 304	S 235 
F 305	D 236 
G 306	E 237 
V 307	A 238 
I 308	K 239 
V 309	R 240 
T 310	M 241 
A 311	C 242 
T 312	G 243 
T 313	L 244 
I 314	L 245 
A 315	L 246 
A 316	V 247 
L 317	G 248 
A 318	G 249 
G 319	L 250 
A 320	D 251 
T 321	T 252 
K 322	V 253 
V 323	V 254 
I 324	N 255 
V 325	F 256 
K 326	L 257 
T 327	S 258 
P 328	F 259 
H 329	S 260 
E 330	M 261 
A 331	E 262 
I 332	F 263 
G 333	L 264 
I 334	A 265 
P 335	K 266 
T 336	S 267 
K 337	P 268 
E 338	E 269 
A 339	H 270 
N 340	R 271 
A 341	Q 272 
A 342	E 273 
G 343	L 274 
I 344	I 275 
K 345	E 276 
A 346	R 277 
T 347	P 278 
K 348	E 279 
M 349	R 280 
A 350	I 281 
L 351	P 282 
N 352	A 283 
M 353	A 284 
L 354	C 285 
E 355	E 286 
G 356	E 287 
Q 357	L 288 
R 358	L 289 
M 359	R 290 
P 360	R 291 
M 361	F 292 
S 362	S 293 
L 365	L 294 
E 366	V 295 
T 367	A 296 
E 368	D 297 
M 369	G 298 
A 370	R 299 
V 371	I 300 
I 372	L 301 
K 373	T 302 
T 376	S 303 
K 377	D 304 
C 378	Y 305 
I 379	E 306 
L 380	F 307 
D 381	H 308 
K 382	G 309 
F 384	V 310 
E 385	Q 311 
L 386	L 312 
G 387	K 313 
K 388	K 314 
G 389	G 315 
D 390	D 316 
L 391	Q 317 
A 392	I 318 
I 393	L 319 
G 394	L 320 
T 395	P 321 
V 396	Q 322 
K 397	E 329 
A 398	R 330 
F 399	E 331 
E 400	N 332 
T 401	A 333 
G 402	C 334 
V 403	P 335 
M 404	M 336 
D 405	H 337 
I 406	V 338 
P 407	D 339 
F 408	F 340 
G 409	S 341 
P 410	R 342 
S 411	Q 343 
K 412	K 344 
Y 413	V 345 
N 414	F 350 
A 415	G 351 
G 416	H 352 
K 417	G 353 
M 418	S 354 
M 419	H 355 
P 420	L 356 
V 421	C 357 
R 422	L 358 
D 423	G 359 
N 424	Q 360 
L 425	H 361 
G 426	L 362 
C 427	A 363 
V 428	R 364 
R 429	R 365 
Y 430	E 366 
L 431	I 367 
E 432	I 368 
F 433	V 369 
G 434	T 370 
N 435	L 371 
V 436	K 372 
P 437	E 373 
F 438	W 374 
T 439	L 375 
E 440	T 376 
E 441	R 377 
I 442	I 378 
K 443	P 379 
N 444	D 380 
Y 445	F 381 
N 446	S 382 
R 447	I 383 
E 448	A 384 
E 457	P 385 
G 458	G 386 
R 459	A 387 
D 460	Q 388 
V 461	I 389 
S 462	Q 390 
F 463	H 391 
Q 464	K 392 
M 465	S 393 
V 466	G 394 
I 467	I 395 
I 470	V 396 
F 471	S 397 
A 472	G 398 
V 473	V 399 
G 474	Q 400 
K 475	A 401 
G 476	L 402 
R 477	P 403 
L 478	L 404 
I 479	V 405 
G 480	W 406 
R 481	D 407 
P 482	P 408 
E 483	A 409 
TER 
END 
