PFRMAT AL 
TARGET T0050 
AUTHOR 8120-3487-1357 
REMARK Matrix Used: BS_90_25% 
REMARK Alignment Method Used: Quasi-Global Dynamic Programming 
METHOD Sequence-Structure alignment based on the environments 
METHOD published in: Deerfield, Holland-Minkley, Geigel, and  
METHOD Nicholas 1997. "Classification of the Environment of  
METHOD Protein Residues" J. Prot. Chem. 16:441-446. 
METHOD  
METHOD This test uses our latest (unpublished) environment  
METHOD classifications and extentions. 
MODEL  1 
PARENT 1req_A 
M    1 E  594 
E    2 G  595 
K    3 R  596 
K    4 R  597 
T    5 P  598 
I    6 I  600 
V    7 L  601 
L    8 L  602 
G    9 A  603 
V   10 K  604 
I   11 M  605 
G   12 G  606 
S   13 Q  607 
D   14 D  608 
C   15 G  609 
H   16 H  610 
A   17 D  611 
V   18 R  612 
G   19 G  613 
N   20 Q  614 
K   21 K  615 
I   22 V  616 
L   23 I  617 
D   24 A  618 
H   25 T  619 
A   26 A  620 
F   27 Y  621 
T   28 A  622 
N   29 D  623 
A   30 L  624 
G   31 G  625 
F   32 F  626 
N   33 D  627 
V   34 V  628 
V   35 D  629 
N   36 V  630 
I   37 P  632 
G   38 L  633 
V   39 F  634 
L   40 Q  635 
S   41 T  636 
P   42 P  637 
Q   43 E  638 
E   44 E  639 
V   45 T  640 
I   47 A  641 
K   48 R  642 
A   49 Q  643 
A   50 A  644 
I   51 V  645 
E   52 E  646 
T   53 A  647 
K   54 D  648 
A   55 V  649 
D   56 H  650 
A   57 V  651 
I   58 V  652 
L   59 G  653 
L   60 V  654 
S   61 S  655 
S   62 S  656 
L   63 L  657 
Y   64 A  658 
G   65 G  659 
Q   66 G  660 
G   67 H  661 
E   68 L  662 
I   69 T  663 
D   70 L  664 
C   71 V  665 
K   72 P  666 
G   73 A  667 
L   74 L  668 
R   75 R  669 
Q   76 K  670 
K   77 E  671 
C   78 L  672 
D   79 D  673 
E   80 K  674 
A   81 L  675 
G   82 G  676 
L   83 R  677 
E   84 P  678 
G   85 D  679 
I   86 I  680 
L   87 L  681 
L   88 I  682 
Y   89 T  683 
V   90 V  684 
G   91 G  685 
G   92 G  686 
N   93 V  687 
H  100 I  688 
W  101 P  689 
P  102 E  690 
D  103 Q  691 
V  104 D  692 
E  105 F  693 
K  106 D  694 
R  107 E  695 
F  108 L  696 
K  109 R  697 
D  110 K  698 
M  111 D  699 
G  112 G  700 
Y  113 A  701 
D  114 V  702 
R  115 E  703 
V  116 I  704 
Y  117 Y  705 
A  118 T  706 
P  119 P  707 
G  120 G  708 
T  121 T  709 
P  122 V  710 
P  123 I  711 
E  124 P  712 
V  125 E  713 
G  126 S  714 
I  127 A  715 
A  128 I  716 
D  129 S  717 
L  130 L  718 
K  131 V  719 
K  132 K  720 
D  133 K  721 
L  134 L  722 
N  135 R  723 
I  136 A  724 
E  137 S  725 
TER 
END 
