PFRMAT AL 
TARGET T0050 
AUTHOR 6795-8227-6214 
REMARK CASP3 Prediction by Michael Bass on 8/14/98 
METHOD AmgenThread.  Gapped alignments with no end penalties. 
METHOD Uses residue-based statistical potentials.  Specific 
METHOD potentials include exposed surface area, inter-residue 
METHOD distance-dependent contacts, and backbone dihedral 
METHOD angle preferences.  The search database is against the 
METHOD Hobohm PDB-SELECT list, Oct 97, at the 45% identity or 
METHOD less level containing 1,247 structures. 
METHOD This is an automatic prediction method. 
REMARK Results from database search: 
REMARK Sequence "t0050" has a significant match 
REMARK pdb1ofv       7.230     0.241    20.963  FLAVODOXIN (OXIDIZED FORM) 
REMARK                                          SCOP: A/B; Flavodoxin-like 
REMARK pdb2fx2       5.764     0.200     0.161  FLAVODOXIN 
REMARK                                          SCOP: A/B; Flavodoxin-like 
REMARK pdb5nul       5.520     0.194     9.812  MOLECULE: FLAVODOXIN; 
REMARK                                          SCOP: A/B; Flavodoxin-like 
REMARK pdb3chy       5.519     0.194     9.621  CHE*Y 
REMARK                                          SCOP: A/B; Flavodoxin-like 
REMARK pdb1maz       4.784     0.173   -12.815  MOLECULE: BCL-XL; 
REMARK                                          SCOP: Membrane; Toxins' membrane translocation domains 
REMARK pdb2trx_A     4.596     0.168     6.794  THIOREDOXIN 
REMARK                                          SCOP: A/B; Thioredoxin-like 
REMARK pdb1jon       4.522     0.166     8.490  MOLECULE: GROEL, HSP60 CLASS; 
REMARK                                          SCOP: A/B; The "swivelling" beta/beta/alpha domain 
REMARK pdb1erw       4.382     0.162     5.810  MOLECULE: THIOREDOXIN; 
REMARK                                          SCOP: A/B; Thioredoxin-like 
REMARK pdb1dts       3.901     0.149     9.857  DETHIOBIOTIN SYNTHASE (E.C.6.3.3.3) 
REMARK                                          SCOP: A/B; P-loop containing nucleotide triphosphate hydrolases 
REMARK pdb1plc       3.728     0.144    -1.682  PLASTOCYANIN (CU2+, PH 6.0) 
REMARK                                          SCOP: Beta; Cupredoxins 
MODEL  1 
REMARK Sequence alignment follows: 
REMARK t0050        MEKKTIVLGVIGSDCHAVGNKILDHAFTNAGFN.VVNIGVLSPQEVFIKA 
REMARK                  :||| |  :| :.   |||..|: .|| : .|.|   ...:: :|: 
REMARK pdb1ofv      ...AKIGL.FYGTQ.TGVTQTIAESIQQEFGGESIVDL..NDIANADASD 
REMARK  
REMARK t0050        AIETKADAILLSSLYGQGEI..DCKGLRQKCDEAGLEGILLYVGGNIVVG 
REMARK              |#|:|  :|| :. |.||.:  .|:.::::|:: #|:| .|:|   |.|| 
REMARK pdb1ofv      LNAYD.YLIIGCPTWNVGELQSDWEGIYDDLDSVNFQGKKVAY...FGAG 
REMARK  
REMARK t0050        KQHWPD.........VEKRFKDMGYDRVYAPGTPPEVGIADLKKDLNIE. 
REMARK              : : ::         |||||.:.|  .|   |::| #|. ..||## ||  
REMARK pdb1ofv      DQVGYSDNFQDAMGILEEKISSLGSQTV...GYWPIEGY.DFNESKAVRN 
REMARK  
REMARK t0050        .................................. 
REMARK                                                 
REMARK pdb1ofv      NQFVGLAIDEDNQPDLTKNRIKTWVSQLKSEFGL 
REMARK  
PARENT 1ofv 
K 4  A 1 
T 5  K 2 
I 6  I 3 
V 7  G 4 
L 8  L 5 
V 10  F 6 
I 11  Y 7 
G 12  G 8 
S 13  T 9 
D 14  Q 10 
H 16  T 11 
A 17  G 12 
V 18  V 13 
G 19  T 14 
N 20  Q 15 
K 21  T 16 
I 22  I 17 
L 23  A 18 
D 24  E 19 
H 25  S 20 
A 26  I 21 
F 27  Q 22 
T 28  Q 23 
N 29  E 24 
A 30  F 25 
G 31  G 26 
F 32  G 27 
N 33  E 28 
V 34  I 30 
V 35  V 31 
N 36  D 32 
I 37  L 33 
L 40  N 34 
S 41  D 35 
P 42  I 36 
Q 43  A 37 
E 44  N 38 
V 45  A 39 
F 46  D 40 
I 47  A 41 
K 48  S 42 
A 49  D 43 
A 50  L 44 
I 51  N 45 
E 52  A 46 
T 53  Y 47 
K 54  D 48 
D 56  Y 49 
A 57  L 50 
I 58  I 51 
L 59  I 52 
L 60  G 53 
S 61  C 54 
S 62  P 55 
L 63  T 56 
Y 64  W 57 
G 65  N 58 
Q 66  V 59 
G 67  G 60 
E 68  E 61 
I 69  L 62 
D 70  D 65 
C 71  W 66 
K 72  E 67 
G 73  G 68 
L 74  I 69 
R 75  Y 70 
Q 76  D 71 
K 77  D 72 
C 78  L 73 
D 79  D 74 
E 80  S 75 
A 81  V 76 
G 82  N 77 
L 83  F 78 
E 84  Q 79 
G 85  G 80 
I 86  K 81 
L 87  K 82 
L 88  V 83 
Y 89  A 84 
V 90  Y 85 
I 94  F 86 
V 95  G 87 
V 96  A 88 
G 97  G 89 
K 98  D 90 
Q 99  Q 91 
H 100  V 92 
W 101  G 93 
P 102  Y 94 
D 103  S 95 
V 104  L 105 
E 105  E 106 
K 106  E 107 
R 107  K 108 
F 108  I 109 
K 109  S 110 
D 110  S 111 
M 111  L 112 
G 112  G 113 
Y 113  S 114 
D 114  Q 115 
R 115  T 116 
V 116  V 117 
G 120  G 118 
T 121  Y 119 
P 122  W 120 
P 123  P 121 
E 124  I 122 
V 125  E 123 
G 126  G 124 
I 127  Y 125 
D 129  D 126 
L 130  F 127 
K 131  N 128 
K 132  E 129 
D 133  S 130 
L 134  K 131 
N 135  A 132 
I 136  V 133 
E 137  R 134 
TER 
END 
