PFRMAT AL  
TARGET T0045 
AUTHOR 9808-8259-1323 
METHOD Searched 1962 pdb sequences with max. 90% identity using a profile made 
METHOD from a multiple sequence aligment and PAM250.  
REMARK Aligment for profile: 
REMARK SW:YBAK_ECOLI              1 MTPAVKLLEKNKISFQIHTYEHDPAETNFGDEVVKKLGLNPDQVYKTLLV 
REMARK SW:YBAK_SALTY              1 MTPAVKLLEKNKIPFNIHTYDHDPNETNFGDEVVRKLGLNADQVYKTLLV 
REMARK SW:YBAK_HAEIN              1 MTPAIDLLKKQKIPFILHTYDHDPNNQHFGDEAAEKLGIDPNRSFKTLLV 
REMARK SW:EBSC_ENTFA              9 KTNAMRMVEQHKVPYKEYEFAW.SEDHLSAESVAESLGIEKGRIFKTLVT 
REMARK GP:PAU49666_2              1 MTPAIDLLKKARAAHKVLSYSHDPKAPSYGLEAAEKLGLDPQRVFKTLLA 
REMARK PIR:D69849                 7 KTNAVRLIEQQNISYEVLGYKT.DGQPVDGISVAEKIGYSLKYVYKTLVA 
REMARK PIR:C64939                12 .QRLIALLSQEGADFRVVTHEA....VGKCEAVSEIRGTALGQGAKALVC 
REMARK    
REMARK SW:YBAK_ECOLI             51 AVNGDMKHLAVA.VTPVAGQLDLKKVAKALGAKKVEMADPMVAQRSTGYL 
REMARK SW:YBAK_SALTY             51 AVNGDMKQLAVA.VTPVAGQLDLKKVAKALGAKKVDMADPMVAQRTTGYL 
REMARK SW:YBAK_HAEIN             51 AENGDQKKLACF.VLATANMLNLKKAAKSIGVKKVEMADKDAAQKSTGYL 
REMARK SW:EBSC_ENTFA             58 VGNKTGPVVA...VIPGNQELDLKKLAKASGNKKVEMLHLKDLEATTGYI 
REMARK GP:PAU49666_2             51 ATEKGELLVA...VVPVIGSLDLKALAHAAGAKKADMADPQAAQRATGYL 
REMARK PIR:D69849                56 AAGTNHYYVF...VVPVAEELDVKKAAKVTGEKKIEMIAMKELLAVTGYL 
REMARK PIR:C64939                57 KVKGNGVNQHVLAILAADQQADLSQLASHIGGLRASLASPAEVDELTGCV 
REMARK    
REMARK SW:YBAK_ECOLI            100 VGGISPLGQKKRLPTIIDAPA.QEFATIYVSGGKRGLDIELAAGDLAKIL 
REMARK SW:YBAK_SALTY            100 VGGISPLGQKKRLPTLIDAPA.RTFATIYVSGGKRGLDIELAADDLAAIL 
REMARK SW:YBAK_HAEIN            100 VGGISPLGQKKRVKTVIKSTA.LEFETIYVSGGKRGLSVEIAPQDLAKVL 
REMARK SW:EBSC_ENTFA            105 RGGCSPTGMKKQFPTYLAEEA.QQYSAIIVSAGKRGMQIELAPEAILSLT 
REMARK GP:PAU49666_2             98 VGGISPLGQKKRLRTFIDESA.RQYPSIHVSAGRRGLEVELAAEVLAQLT 
REMARK PIR:D69849               103 RGGCSPIGMKKLFPTYIDASA.ETLDFIIVSAGKIGMQLKLAPQDLARSC 
REMARK PIR:C64939               107 FGAIPPFSFHPKLKLVADPLLFERFDEIAFNAGMLDKSVILKTADYLRIA 
REMARK    
REMARK SW:YBAK_ECOLI            149 DAKFADIARR 
REMARK SW:YBAK_SALTY            149 GAKFADIARR 
REMARK SW:YBAK_HAEIN            149 GAEFTDIVDE 
REMARK SW:EBSC_ENTFA            154 NGQFAEITTK 
REMARK GP:PAU49666_2            147 QGSFAAIGRE 
REMARK PIR:D69849               152 DAAFAEIV.. 
REMARK PIR:C64939               157 QPELVNFRRT 
REMARK    
REMARK Results: 
REMARK pdb90:1npx                +   5.74   4.60  447. !  Resolution=2.16  447 residues NADH PEROXIDASE (E.C.1.11.1.1) NON-ACTIVE FORM WI 
REMARK pdb90:1ovwA               +   4.95   4.27  398. ! Resolution=2.70  398 residues MOL_ID: 1; 
REMARK pdb90:2cmd                +   4.84   4.22  312. !  Resolution=1.87  312 residues MALATE DEHYDROGENASE (E.C.1.1.1.37) 
REMARK pdb90:1lpfA               +   4.14   3.93  472. ! Resolution=2.80  472 residues DIHYDROLIPOAMIDE DEHYDROGENASE (E.C.1.8.1.4) COMPL 
REMARK  
REMARK Alignment: 
REMARK t0045.pep                  1 MTPAIDLLKKQKIPFILHTYDHDPNNQHFGDEAAEKLGIDPNRSFKTLLV 
REMARK 1npx.seq                   1 ......................MKVIVLGSSHGGYEAVEELLNLHPDAEI 
REMARK   Consensus                1 MTPAIRLLEQQKVPYRILTYDHDPDEPGFGEEVAEKLGIDLGRVYKTLLC 
REMARK    
REMARK t0045.pep                 51 AENGDQKKLACF.VLATANMLNLKKAAKSIGVKKVEMADKDAAQKSTGYL 
REMARK 1npx.seq                  29 QWYEKGDFISFLSCGMQLYLEGKVKDVNSVRYMTGEKMESRGVNVFSNTE 
REMARK   Consensus               51 AVDGDGFHVHVLAVLPVDEQLDLKKLAKAIGGKKVEMVDPKDVQRVTGYL 
REMARK    
REMARK t0045.pep                100 VGGISPLGQKKRVKTVIKSTA..LEFETIYVSGGKRGLSVEIAPQDLAKV 
REMARK 1npx.seq                  79 ITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFELDIPGKDLDNI 
REMARK   Consensus              101 IGGCPPLGMKKRLPTFIDPPA.FQQFDTIYISGGKRGMEIELAPEDLLRI 
REMARK    
REMARK t0045.pep                148 LGAEFTDIVDE 
REMARK 1npx.seq                 129 ........... 
REMARK   Consensus              151 VEPEFADIVRK 
MODEL 1  
PARENT 1npx 
D  23    M   1     
P  24    K   2     
N  25    V   3     
N  26    I   4     
Q  27    V   5     
H  28    L   6     
F  29    G   7     
G  30    S   8     
D  31    S   9     
E  32    H  10     
A  33    G  11     
A  34    G  12     
E  35    Y  13     
K  36    E  14     
L  37    A  15     
G  38    V  16     
I  39    E  17     
D  40    E  18     
P  41    L  19     
N  42    L  20     
R  43    N  21     
S  44    L  22     
F  45    H  23     
K  46    P  24     
T  47    D  25     
L  48    A  26     
L  49    E  27     
V  50    I  28     
A  51    Q  29     
E  52    W  30     
N  53    Y  31     
G  54    E  32     
D  55    K  33     
Q  56    G  34     
K  57    D  35     
K  58    F  36     
L  59    I  37     
A  60    S  38     
C  61    F  39     
F  62    L  40     
V  63    C  42     
L  64    G  43     
A  65    M  44     
T  66    Q  45     
A  67    L  46     
N  68    Y  47     
M  69    L  48     
L  70    E  49     
N  71    G  50     
L  72    K  51     
K  73    V  52     
K  74    K  53     
A  75    D  54     
A  76    V  55     
K  77    N  56     
S  78    S  57     
I  79    V  58     
G  80    R  59     
V  81    Y  60     
K  82    M  61     
K  83    T  62     
V  84    G  63     
E  85    E  64     
M  86    K  65     
A  87    M  66     
D  88    E  67     
K  89    S  68     
D  90    R  69     
A  91    G  70     
A  92    V  71     
Q  93    N  72     
K  94    V  73     
S  95    F  74     
T  96    S  75     
G  97    N  76     
Y  98    T  77     
L  99    E  78     
V 100    I  79     
G 101    T  80     
G 102    A  81     
I 103    I  82     
S 104    Q  83     
P 105    P  84     
L 106    K  85     
G 107    E  86     
Q 108    H  87     
K 109    Q  88     
K 110    V  89     
R 111    T  90     
V 112    V  91     
K 113    K  92     
T 114    D  93     
V 115    L  94     
I 116    V  95     
K 117    S  96     
S 118    G  97     
T 119    E  98     
A 120    E  99     
L 121    E 102     
E 122    N 103     
F 123    Y 104     
E 124    D 105     
T 125    K 106     
I 126    L 107     
Y 127    I 108     
V 128    I 109     
S 129    S 110     
G 130    P 111     
G 131    G 112     
K 132    A 113     
R 133    V 114     
G 134    P 115     
L 135    F 116     
S 136    E 117     
V 137    L 118     
E 138    D 119     
I 139    I 120     
A 140    P 121     
P 141    G 122     
Q 142    K 123     
D 143    D 124     
L 144    L 125     
A 145    D 126     
K 146    N 127     
V 147    I 128     
TER 
END 
