PFRMAT AL 
TARGET T0045 
AUTHOR 7968-8279-8809 
REMARK ========================================================================= 
REMARK              Shane S. Sturrock, BRU 1998 
REMARK              _/_/_/     _/_/_/     _/_/_/               PARAMETERS 
REMARK           _/_/  _/_/ _/_/  _/_/ _/_/  _/_/ 
REMARK          _/_/       _/_/       _/_/                   PAMS       220 
REMARK           _/_/_/     _/_/_/     _/_/_/     ALIGN 3.0  GAPOPEN     10 
REMARK              _/_/       _/_/       _/_/               GAPEXTEND    2 
REMARK       _/_/  _/_/ _/_/  _/_/ _/_/  _/_/                RNG     1  158 
REMARK        _/_/_/     _/_/_/     _/_/_/                   QVAL        80 
REMARK      Sequence & Secondary Structures                  PHD_SCORE  VAR 
REMARK 
METHOD Results for the target , compared against a database of sequences 
METHOD derived from PDB DSSP files and filtered to remove redundant identical 
METHOD sequences.  Alignments are based on standard Smith Waterman best local 
METHOD similarity with the addition of secondary structure prediction. 
REMARK ========================================================================= 
MODEL  1 
PARENT 1pkp 
D    40    G    28  
P    41    R    29  
N    42    R    30  
R    43    L    31  
S    44    R    32  
F    45    F    33  
K    46    S    34  
T    47    A    35  
L    48    L    36  
L    49    V    37  
V    50    V    38  
A    51    V    39  
E    52    G    40  
N    53    D    41  
D    55    K    42  
Q    56    N    43  
K    57    G    44  
K    58    H    45  
L    59    V    46  
A    60    G    47  
C    61    F    48  
F    62    G    49  
V    63    T    50  
L    64    G    51  
A    65    K    52  
T    66    A    53  
A    67    Q    54  
N    68    E    55  
M    69    V    56  
L    70    E    58  
N    71    A    59  
L    72    I    60  
K    73    R    61  
K    74    K    62  
A    75    A    63  
A    76    I    64  
K    77    E    65  
S    78    E    73  
I    79    V    74  
G    80    P    75  
V    81    I    76  
K    82    V    77  
K    83    G    78  
V    84    T    79  
E    85    T    80  
M    86    I    81  
A    87    P    82  
D    88    H    83  
K    89    E    84  
D    90    V    85  
A    91    I    86  
A    92    G    87  
Q    93    H    88  
K    94    F    89  
S    95    G    90  
T    96    A    91  
G    97    G    92  
Y    98    E    93  
L    99    I    94  
V   100    I    95  
G   101    L    96  
G   102    K    97  
I   103    P    98  
S   104    A    99  
P   105    S   100  
L   106    E   101  
G   107    G   102  
Q   108    T   103  
K   109    G   104  
K   110    V   105  
R   111    I   106  
V   112    A   107  
K   113    G   108  
T   114    G   109  
V   115    P   110  
I   116    A   111  
K   117    R   112  
S   118    A   113  
T   119    V   114  
A   120    L   115  
L   121    A   118  
E   122    G   119  
F   123    I   120  
E   124    S   121  
T   125    D   122  
I   126    I   123  
Y   127    L   124  
V   128    S   125  
S   129    K   126  
G   130    S   127  
G   131    I   128  
K   132    G   129  
R   133    S   130  
G   134    N   131  
L   135    T   132  
S   136    P   133  
V   137    I   134  
E   138    N   135  
I   139    M   136  
A   140    V   137  
P   141    R   138  
Q   142    A   139  
D   143    T   140  
L   144    F   141  
A   145    D   142  
K   146    G   143  
V   147    L   144  
L   148    K   145  
TER 
END 
