PFRMAT AL 
TARGET T0045 
AUTHOR 6795-8227-6214 
REMARK CASP3 Prediction by Michael Bass on 8/14/98 
METHOD AmgenThread.  Gapped alignments with no end penalties. 
METHOD Uses residue-based statistical potentials.  Specific 
METHOD potentials include exposed surface area, inter-residue 
METHOD distance-dependent contacts, and backbone dihedral 
METHOD angle preferences.  The search database is against the 
METHOD Hobohm PDB-SELECT list, Oct 97, at the 45% identity or 
METHOD less level containing 1,247 structures. 
METHOD This is an automatic prediction method. 
REMARK Results from database search: 
REMARK Sequence "t0045" has a significant match 
REMARK pdb1ofv       5.471     0.230    -0.301  FLAVODOXIN (OXIDIZED FORM) 
REMARK                                          SCOP: A/B; Flavodoxin-like 
REMARK pdb1rro       5.192     0.221    21.832  RAT ONCOMODULIN 
REMARK                                          SCOP: Alpha; EF-hand 
REMARK pdb1maz       4.895     0.211     1.451  MOLECULE: BCL-XL; 
REMARK                                          SCOP: Membrane; Toxins' membrane translocation domains 
REMARK pdb2hbg       4.661     0.203    15.752  HEMOGLOBIN (DEOXY) 
REMARK                                          SCOP: Alpha; Globin-like 
REMARK pdb1aep       4.102     0.184    12.434  APOLIPOPHORIN III 
REMARK                                          SCOP: Alpha; Apolipophorin-III 
REMARK pdb1cpq       4.094     0.184     6.657  MOLECULE: CYTOCHROME C'; 
REMARK                                          SCOP: Alpha; Four-helical up-and-down bundle 
REMARK pdb5pal       3.905     0.177    10.295  PARVALBUMIN (ALPHA LINEAGE) 
REMARK                                          SCOP: Alpha; EF-hand 
REMARK pdb1aba       3.839     0.175    13.593  GLUTAREDOXIN MUTANT WITH VAL 15 REPLACED BY GLY AND TYR 16 
REMARK                                          SCOP: A/B; Thioredoxin-like 
REMARK pdb1myt       3.622     0.168     9.689  MYOGLOBIN (MET) 
REMARK                                          SCOP: Alpha; Globin-like 
REMARK pdb1aya_A     3.558     0.166     0.584  TYROSINE PHOSPHATASE SYP (N-TERMINAL SH2 DOMAIN) 
REMARK                                          SCOP: A+B; SH2-like 
REMARK pdb1cot       3.398     0.160     6.823  CYTOCHROME C=2= (FORMERLY CYTOCHROME C=550=) 
MODEL  2 
REMARK Sequence alignment follows: 
REMARK t0045        MTPAIDLLKKQKIPFILHTYDHDPNNQHFGDEAAEKLGID..PNRSFKTL 
REMARK                .| |:|:|:||  :|   |.:| |.   :|||| |||.  | : |..| 
REMARK pdb1rro      ..SITDILSAEDIAAALQ..ECQDPDTFEPQKFFQTSGLSKMSASQVKDI 
REMARK  
REMARK t0045        L..VAENGDQ...KKLACFVLATANMLNLKKAAKSIGVKKVEMADKDAAQ 
REMARK              |  | |||:.   :|#.# || |     |.| |:.| #:# |.| |.  | 
REMARK pdb1rro      FRFIDNDQSGYLDGDELKYFLQK.....FQSDARELTESETKSLMDAADN 
REMARK  
REMARK t0045        KSTGYLVGGISPLGQKKRVKTVIKSTALEFETIYVSGGKRGLSVEIAPQD 
REMARK              | .|:|          ||| :||..                          
REMARK pdb1rro      DGDGKIGA........DEFQEMVHS......................... 
REMARK  
REMARK t0045        LAKVLGAEFTDIVDE 
REMARK                              
REMARK pdb1rro      ............... 
REMARK  
PARENT 1rro 
P 3  S 1 
A 4  I 2 
I 5  T 3 
D 6  D 4 
L 7  I 5 
L 8  L 6 
K 9  S 7 
K 10  A 8 
Q 11  E 9 
K 12  D 10 
I 13  I 11 
P 14  A 12 
F 15  A 13 
I 16  A 14 
L 17  L 15 
H 18  Q 16 
D 21  E 17 
H 22  C 18 
D 23  Q 19 
P 24  D 20 
N 25  P 21 
N 26  D 22 
Q 27  T 23 
H 28  F 24 
F 29  E 25 
G 30  P 26 
D 31  Q 27 
E 32  K 28 
A 33  F 29 
A 34  F 30 
E 35  Q 31 
K 36  T 32 
L 37  S 33 
G 38  G 34 
I 39  L 35 
D 40  S 36 
P 41  S 39 
N 42  A 40 
R 43  S 41 
S 44  Q 42 
F 45  V 43 
K 46  K 44 
T 47  D 45 
L 48  I 46 
L 49  F 47 
V 50  I 50 
A 51  D 51 
E 52  N 52 
N 53  D 53 
G 54  Q 54 
D 55  S 55 
Q 56  G 56 
K 57  G 60 
K 58  D 61 
L 59  E 62 
A 60  L 63 
C 61  K 64 
F 62  Y 65 
V 63  F 66 
L 64  L 67 
A 65  Q 68 
T 66  K 69 
L 72  F 70 
K 73  Q 71 
K 74  S 72 
A 75  D 73 
A 76  A 74 
K 77  R 75 
S 78  E 76 
I 79  L 77 
G 80  T 78 
V 81  E 79 
K 82  S 80 
K 83  E 81 
V 84  T 82 
E 85  K 83 
M 86  S 84 
A 87  L 85 
D 88  M 86 
K 89  D 87 
D 90  A 88 
A 91  A 89 
A 92  D 90 
Q 93  N 91 
K 94  D 92 
S 95  G 93 
T 96  D 94 
G 97  G 95 
Y 98  K 96 
L 99  I 97 
V 100  G 98 
G 101  A 99 
K 110  D 100 
R 111  E 101 
V 112  F 102 
K 113  Q 103 
T 114  E 104 
V 115  M 105 
I 116  V 106 
K 117  H 107 
S 118  S 108 
TER 
END 
