 
PFRMAT     AL 
TARGET     T0078 
AUTHOR     4070-8855-4894 
METHOD     The target is compared with PDB25 database (U.Hobohm et al., 1992). 
METHOD     For each structure in PDB25, a model is built in the following way: 
METHOD     the sequence (query) is compared with NR database using transitive  
METHOD     BLAST (Neuwald et al. 1997). Similar sequences are collected and  
METHOD     purged at score 150.  Those sequences are aligned with query  
METHOD     sequence using Bayesian aligner (Zhu et al., 1998) and a  
METHOD     profile-like model is built (Lawrence et al. 1993; Gribskov et al., 
METHOD     1987; unpublished result by Jun Zhu, Roland Luthy and Charlse E.  
METHOD     Lawrence).  Then, the target file is compared with the models  
METHOD     derived from PDB25. 
MODEL     1 
PARENT    2tys_B 
I  101   G   179 
F  102   S   180 
Y  103   Y   181 
M  104   E   182 
T  105   T   183 
A  106   A   184 
S  107   H   185 
F  108   Y   186 
Q  109   M   187 
A  110   L   188 
P  111   G   189 
E  112   T   190 
A  113   A   191 
G  114   A   192 
F  115   G   193 
E  116   P   194 
H  117   H   195 
Q  118   P   196 
K  119   Y   197 
T  120   P   198 
M  121   T   199 
P  122   I   200 
S  123   V   201 
A  124   R   202 
P  125   E   203 
A  126   F   204 
P  127   Q   205 
TER 
END 
