PFRMAT AL 
TARGET T0072 
AUTHOR 9808-8259-1323 
METHOD Searched 1962 pdb sequences with max. 90% identity using a 
METHOD sequence profile based on alignment below and PAM250.  
REMARK 
REMARK Alignment used for sequence profile: 
REMARK    
REMARK t0072.pep         1 RLSWYDPDFQARLTRSNSKCQGQLEVYLKDGWHMVCSQSWGRSSKQWEDP 
REMARK SW:WC11_BOVIN     1 AYIWCADSRQIRLVDGGGRCSGRVEILDQGSWGTICDDRW........DL 
REMARK SW:MSRE_BOVIN     1 SGSMQRQSNTVRLVGGSGPHEGRVEIFHEGQWGTVCDDRW........EL 
REMARK SW:MSRE_HUMAN     1 GNTL.TPFTKVRLVGGSGPHEGRVEILHSGQWGTICDDRW........EV 
REMARK PIR:S36077        1 SAVACIESGQLRLVNGGGRCAGRVEIYHEGSWGTICDDSW........DL 
REMARK GP:MUSMSRI_1      1 SVGGSTPLKTVRLVGGSGAHEGRVEIFHQGQWGTICDDRW........DI 
REMARK GP:SSSRP2_1       1 GTANCSDSRQLRLVDGGSYCSGSVEILHQGSWGTVCDDSW........DL 
REMARK SW:MSRE_RABIT     1 SGSILTPSATVRLVGGRGPHEGRVEILHNGQWGTVCDDHW........EL 
REMARK GP:SSSRP3_1       1 STTNCSESRQLRLVDGESYCSRRVEILHQGSWGTICDESW........DL 
REMARK GP:OCU69143_1     1 STPVHISGLQLRLVNGSDRCEGRVEVLYQGSWGTVCDDSW........DL 
REMARK SW:CD6_HUMAN      1 R.VTCAENRALRLVDGGGACAGRVEMLEHGEWGSVCDDTW........DL 
REMARK GP:SSSRP4_1       1 AAVPCTDKEKLRLRGGNSLCSGRVEVWHSGSWGTVCDDSW........SL 
REMARK GP:SSSRP5_1       1 TAAPCTDKEKLRLRGGDSVCSGRVEVWHSGSWGTVCDDSW........SL 
REMARK SW:SPER_STRPU     1 .VCKPNVEGDIRLMDGSGPHEGRVEIWHDDAWGTICDDGW....D.W... 
REMARK GP:SUHASAP_1      1 .VCKPNVEGDIRLMDGSGPHEGRVEIWHDDAWGTICDDGW....D.W... 
REMARK PIR:I49100        1 ..VTCAENQAVRLVDGSSRCAGRVEMLEHGEWGTVCDDTW........DL 
REMARK GP:AF018268_1     1 .ME.CEDPFELKLVGGDTPCSGRLEVLHKGSWGSVCDDNWG.......E. 
REMARK PIR:A57190        1 TTDATDSGLAVRLVNGGDRCQGRVEILYQGSWGTVCDDSW........DT 
REMARK GP:APU30933_1     1 .ICKENQEGDIRLMDGSGPHEGRVEIYHDGAWGTICDDGW....D.W... 
REMARK GP:HSDMBT1_1      1 E.G.SDSGLALRLVNGDGRCQGRVEILYRGSWGTVCDDSW........DT 
REMARK GP:MMU37438_1     1 PTDGTDSGLAVRLVNGGDRCQGRVEILYQGSWGTVCDDSW........DL 
REMARK GP:SSC5F12_1      1 TAARTEWDLALRLVNGGDRCQGRVEVLYQGSWGTVCXDSW........DT 
REMARK GP:HSU82812_1     1 ..VECEDPFDLRLVGGDNLCSGRLEVLHKGVWGSVCDDNWG.......E. 
REMARK PIR:S56745        1 SFPRNVSLRLVNWNSSHPTCAGRVEIYHGGQWGTVCDDNW........DV 
REMARK PIR:JC5759        1 G.HRLSPGFPIRLVDGENKKEGRVEVFVNGQWGTICDDGW.......TD. 
REMARK GP:HSNEUROTR_1    1 EGHRLSLGFPVRLMDGENKKEGRVEVFINGQWGTICDDGW.......TD. 
REMARK PIR:JC4361        1 D.STLSPDVPVRLVGG.GWCQGRVEVYYAGSWGTVCDDSW........DR 
REMARK GP:AF065438_1     1 G.TQGAKDGDMRLVNGASASEGRVEIFYRGRWGTVCDNLW........NL 
REMARK PIR:A47161        1 G.TQGVNDGDMRLADGGATNQGRVEIFYRGQWGTVCDNLW........DL 
REMARK SW:CD5_MOUSE      1 QSGRGGLDIQVMLSGSNSKCQGQVEIQMENKWKTVCSSSWRLSQDHSKNA 
REMARK PIR:A53202        1 G.TQGTEDGDMRLVNGASANEGRVEIFYRGRWGTVCDNLW........NL 
REMARK GP:MAU73375_1     1 G.TQGTKDGDMRLVNGASANEGRVEIFYRGQWGTVCDNLW........NI 
REMARK GP:HSU89942_1     1 AY.K.PEQPLVRLRGGAYIGEGRVEVLKNGEWGTVCDDKW........DL 
REMARK SW:CD5_RAT        1 QSGRGFVGAQVMLSGSNSKCQGLVEVQM.NGMKTVCSSSWRLSQDLWKNA 
REMARK PIR:S43536        1 K.GRGFVGAQVMLSGSNSKCQGLVEVQM.NGMKTVCSSSWRLSQDLWKNA 
REMARK SW:CD5_BOVIN      1 GLKVEVQGLTMRLSGSGSRCQGRLEVSNGTEWYAVHSQSWGQLSLYQVAP 
REMARK PIR:A55840        1 G.QKGESFQRVRIMGGTNR..GRAEVYYNNEWGTICDDDW........DN 
REMARK GP:AF035819_1     1 G.ERGENSVSVRIVGSSNR..GRAEVYYSGTWGTICDDEW........QN 
REMARK    
REMARK t0072.pep        51 SQASKVCQRLNCGVPL...SL.GP..FLVTYTPQ..SSIICYGQLGSFSN 
REMARK SW:WC11_BOVIN    51 DDARVVCKQLGCGEALD..ATVSSF.FGTGSGPIWLDEVNCRGEESQVWR 
REMARK SW:MSRE_BOVIN    51 RGGLVVCRSLGYKGVQ..SVHKRAY.FGKGTGPIWLNEVFCFGKESSIEE 
REMARK SW:MSRE_HUMAN    51 RVGQVVCRSLGYPGVQ..AVHKAAH.FGQGTGPIWLNEVFCFGRESSIEE 
REMARK PIR:S36077       51 SDAHVVCRQLGCGEAIN..ATGSAH.FGEGTGPIWLDEMKCNGKESRIWQ 
REMARK GP:MUSMSRI_1     51 RAGQVVCRSLGYQEVL..AVHKRAH.FGQGTGPIWLNEVMCFGRESSIEN 
REMARK GP:SSSRP2_1      51 DDAHVVCRQLGCGKTL..SALGSAH.FGAGSGRIWLDDVNCTGKESHLWQ 
REMARK SW:MSRE_RABIT    51 RAGQVVCRSLGYRGVK..SVHKKAY.FGQGTGPIWLNEVPCLGMESSIEE 
REMARK GP:SSSRP3_1      51 DDAHVVCRQLGCGDAI..SALGSAH.FGVGSGRIWLDDVNCTGKESHLWQ 
REMARK GP:OCU69143_1    51 NDASVVCRQLGCGTAL..SAPASAQ.FGQSSGSIVLDDVSCSGSEPNLWS 
REMARK SW:CD6_HUMAN     51 EDAHVVCRQLGCGWAVQ..ALPGLH.FTPGRGPIHRDQVNCSGAEAYLWD 
REMARK GP:SSSRP4_1      51 AEAEVVCQQLGCGHALE..ALRDAA.FGPGSGSIWLDEVQCRGRESSLWD 
REMARK GP:SSSRP5_1      51 AEAEVVCQQLGCGHALE..ALRDAA.FGPGNGSIWLDEVQCRGRESSLWD 
REMARK SW:SPER_STRPU    51 ADANVVCRQAGYRGAVKASGFKGED.FGFTWAPIHTSFVMCTGVEDRLID 
REMARK GP:SUHASAP_1     51 ADANVVCRQAGYRGAVKASGFQGED.FGFTWAPIHTSFVMCTGVEDNLID 
REMARK PIR:I49100       51 QDAHVVCKQLKCGWAVK..ALAGLH.FTPGQGPIHRDQVNCSGTEAYLWD 
REMARK GP:AF018268_1    51 KEDQVVCKQLGCGKSLHPSPKTRKI.YGPGAGRIWLDDVNCSGKEQSLEF 
REMARK PIR:A57190       51 KDANVVCRQLVCGWAL..SAPGSAH.FGQGSGSIVLDDVACTGHEAYLWS 
REMARK GP:APU30933_1    51 ADANVACRQAGYKGAIRSSGFQGED.FGYTWGPIHTSYVTCTGTESSLAD 
REMARK GP:HSDMBT1_1     51 NDANVVCRQLGCGWAM..SAPGNAW.FGQGSGPIALDDVRCSGHESYLWS 
REMARK GP:MMU37438_1    51 NDANVVCRQLGCGLAV..SAPGNAR.FGQGSGPIVMDDVACGGYEDYLWR 
REMARK GP:SSC5F12_1     51 NDANVVCRQLGCGWAV..SAPGSAR.FGQGSGPILLGXLRXSGHEXYLWS 
REMARK GP:HSU82812_1    51 KEDQVVCKQLGCGKSL.SPSFRDRKCYGPGVGRIWLDNVRCSGEEQSLEQ 
REMARK PIR:S56745       51 QDAQVVCRQLGCGYAV..SAPGNAY.FGSGSGPITLDDVVCSGAESNLWQ 
REMARK PIR:JC5759       51 KHAAVICRQLGYKGPARARTM..AY.FGEGKGPIHMDNVKCTGNEKALAD 
REMARK GP:HSNEUROTR_1   51 KDAAVICRQLGYKGPARARTM..AY.FGEGKGPIHVDNVKCTGNERSLAD 
REMARK PIR:JC4361       51 QDAEVVCRQLSCGYAV..SAPSNAH.FGVGSGQIWLDDVNCYGQESSLAR 
REMARK GP:AF065438_1    51 LDAHVVCRALGYENATQ..ALSRAA.FGPGKGPIMLDEVECTGNESSLAN 
REMARK PIR:A47161       51 TDASVVCRALGFENATQ..ALGRAA.FGQGSGPIMLDEVQCTGTEASLAD 
REMARK SW:CD5_MOUSE     51 QQASAVCKQLRCGDPL...AL.GP..FPSLNRPQ..NQVFCQGSPWSISN 
REMARK PIR:A53202       51 LDAHVVCRALGYENATQ..ALGRAA.FGPGKGPIMLDEVECTGTESSLAS 
REMARK GP:MAU73375_1    51 LDANVVCRALGYENATQ..ALGRAA.FGPGRGPVMLDEVECTGTEPSLAN 
REMARK GP:HSU89942_1    51 VSASVVCRELGFGSAKE..AVTGSR.LGQGIGPIHLNEIQCTGNEKSIID 
REMARK SW:CD5_RAT       51 NEASTVCQQLGCGNPL...AL..GH.LTLWNRPK..NQILCQGPPWSFSN 
REMARK PIR:S43536       51 NEASTVCQQLGCGNPL...AL..GH.LTLWNRPK..NQILCQGPPWSFSN 
REMARK SW:CD5_BOVIN     51 RQFLKLCQELQCRDPL...LLSSSR.YFKEVQFQ..KLIICHGQLGSFSN 
REMARK PIR:A55840       51 NDATVFCRMLGYSRGR...AL..SS.YGGGSGNIWLDNVNCRGTENSLWD 
REMARK GP:AF035819_1    51 SDAIVFCRMLGYSKGR...ALYKV...GAGTGQIWLDNVQCRGTESTLWS 
REMARK    
REMARK t0072.pep       101 CSH..SRNDMC...HSLGLTCLE 
REMARK SW:WC11_BOVIN   101 CPSWGWRQHNCNHQEDAGVICSG 
REMARK SW:MSRE_BOVIN   101 CRIRQWGVRACSHDEDAGVTCTT 
REMARK SW:MSRE_HUMAN   101 CKIRQWGTRACSHSEDAGVTCTL 
REMARK PIR:S36077      101 CHSHGWGQQNCRHKEDAGVICSE 
REMARK GP:MUSMSRI_1    101 CKINQWGVLSCSHSEDAGVTCTS 
REMARK GP:SSSRP2_1     101 CPSRGWGQHNCRHKEDAGVICSE 
REMARK SW:MSRE_RABIT   101 CKIRQWGVRVCSHGEDAGVTCTL 
REMARK GP:SSSRP3_1     101 CPFRGWGRHDCRHKEDAGVICSE 
REMARK GP:OCU69143_1   101 CSHRGWLSHNCGHHEDAGVVCSG 
REMARK SW:CD6_HUMAN    101 CPGL.PGQHYCGHKEDAGVVCSE 
REMARK GP:SSSRP4_1     101 CAAGPWGQSDCKHEEDAGVRCSG 
REMARK GP:SSSRP5_1     101 CAAGPWGQSDCKHEEDAGVRCSG 
REMARK SW:SPER_STRPU   101 CILRDGWTHSCYHVEDASVVCAT 
REMARK GP:SUHASAP_1    101 CILRDGWTHSCYHVEDASVVCAT 
REMARK PIR:I49100      101 CPGR.PGDQYCGHKEDAGVVCSE 
REMARK GP:AF018268_1   101 CRHRLWGYHDCTHKEDVEVICTD 
REMARK PIR:A57190      101 CSHRGWLSHNCGHHEDAGVICSD 
REMARK GP:APU30933_1   101 CVLRDGWSHSCQHVEDAGVVCAT 
REMARK GP:HSDMBT1_1    101 CPHNGWLSHNCGHGEDAGVICSA 
REMARK GP:MMU37438_1   101 CSHRGWLSHNCGHQEDAGVICSD 
REMARK GP:SSC5F12_1    101 CPHSGWNTHNCGHHEDAGVICSD 
REMARK GP:HSU82812_1   101 CQHRFWGFHDCTHQEDVAVICSG 
REMARK PIR:S56745      101 CRNRGWFYHNCGHHEDAGVICSD 
REMARK PIR:JC5759      101 CVKQDIGRHNCRHSEDAGVICDY 
REMARK GP:HSNEUROTR_1  101 CIKQDIGRHNCRHSEDAGVICDY 
REMARK PIR:JC4361      101 CNHSGWGRHNCGHNEDASVICSR 
REMARK GP:AF065438_1   101 CSSLGWMVSHCGHEKDAGVVCSN 
REMARK PIR:A47161      101 CKSLGWLKSNCRHERDAGVVCTN 
REMARK SW:CD5_MOUSE    101 CNN.TSSQDQC..L.PLSLICLE 
REMARK PIR:A53202      101 CRSLGWMVSRCGHEKDAGVVCSN 
REMARK GP:MAU73375_1   101 CSSLGWLKSRCGHEKDAGVVCSN 
REMARK GP:HSU89942_1   101 CKF.NAESQGCNHEEDAGVRCNT 
REMARK SW:CD5_RAT      101 CST..SSLGQC..L.PLSLVCLE 
REMARK PIR:S43536      101 CST..SSLGQC..L.PLSLVCLE 
REMARK SW:CD5_BOVIN    101 CSL..NRGRQV...DSLALICLE 
REMARK PIR:A55840      101 CSKNSWGNHNCVHNEDAGVEC.S 
REMARK GP:AF035819_1   101 CTKNSWGHHDCSHEEDAGVECSV 
REMARK    
REMARK    
REMARK Search results: 
REMARK           Name               ZScore Score Length   Documentation .. 
REMARK pdb90:1pytD               +   4.39   5.36  251. ! Resolution=2.35  251 residues MOL_ID: 1; 
REMARK pdb90:1thv                +   3.96   5.09  207. !  Resolution=1.75  207 residues THAUMATIN ISOFORM A (ORTHORHOMBIC CRYSTAL FORM) 
REMARK pdb90:1tf3A               +   3.82   5.01   92. ! Resolution=0.00   92 residues MOL_ID: 1; 
REMARK pdb90:1xikB               +   3.74   4.95  341. ! Resolution=1.70  341 residues MOL_ID: 1; 
REMARK 
REMARK Alignment: 
REMARK    
REMARK t0072.pep                 12 ...........RLTRSNSKCQGQLEVYLKDGWHMVCSQSWGRSSKQWED. 
REMARK 1PYTD                     58 HCISNTLTYRVALGKNNLEVEDEAGSLYVGVDTIFVHEKWN.SFLVRNDI 
REMARK   Consensus                1 GLGRGDPGIQVRLVGGDGRCQGRVEVYYDGDWGTVCDDSWGLTQDLWKD. 
REMARK    
REMARK t0072.pep                 50 ....................PSQASKVCQRLNCGVPL............. 
REMARK 1PYTD                    107 ALIKLAETVELGDTIQVACLPSEGSLLPQDYPCFVTGWGRLYTNGPIAAE 
REMARK   Consensus               51 ....................PKEAHVVCRQLGCGNPL............. 
REMARK    
REMARK t0072.pep                 67 ...SLG...PFLVTYTPQ.......SSIICYGQLGSFSNCSH..SRNDMC 
REMARK 1PYTD                    157 LQQGLQPVVDYATCSQRDWWGTTVKETMVCAGGDGVISACNGDSGGPLNC 
REMARK   Consensus              101 QPPALSGPHCFGPGTGPIW.....LDEVMCHGQESSLWDCSHRGWGHHQC 
REMARK    
REMARK t0072.pep                102 .............HSLGLTCLE 
REMARK 1PYTD                    207 QADGQWDVRGIVSFGSGLSC.. 
REMARK   Consensus              151 GHQ..........EDLGVICLD 
REMARK    
REMARK   Consensus              201  
REMARK    
MODEL 1  
PARENT 1PYTD 
R  12    A 767 
L  13    L 768 
T  14    G 769 
R  15    K 770 
S  16    N 771 
N  17    N 772 
S  18    L 773 
K  19    E 774 
C  20    V 775 
Q  21    E 776 
G  22    D 777 
Q  23    E 778 
L  24    A 779 
E  25    G 779A 
V  26    S 780 
Y  27    L 781 
L  28    Y 782 
K  29    V 783 
D  30    G 784 
G  31    V 785 
W  32    D 786 
H  33    T 787 
M  34    I 788 
V  35    F 789 
C  36    V 790 
S  37    H 791 
Q  38    E 792 
S  39    K 793 
W  40    W 794 
G  41    N 795 
S  43    S 796 
S  44    F 797 
K  45    L 798 
Q  46    V 799 
W  47    R 800 
E  48    N 801 
D  49    D 802 
P  50    P 824 
S  51    S 825 
Q  52    E 826 
A  53    G 827 
S  54    S 828 
K  55    L 829 
V  56    L 830 
C  57    P 831 
Q  58    Q 832 
R  59    D 833 
L  60    Y 834 
N  61    P 835 
C  62    C 836 
G  63    F 837 
V  64    V 838 
P  65    T 839 
L  66    G 840 
S  67    G 858 
L  68    L 859 
G  69    Q 860 
P  70    D 864 
F  71    Y 865 
L  72    A 866 
V  73    T 867 
T  74    C 868 
Y  75    S 869 
T  76    Q 870 
P  77    R 870A 
Q  78    D 870B 
S  79    E 878 
S  80    T 879 
I  81    M 880 
I  82    V 881 
C  83    C 882 
Y  84    A 883 
G  85    G 884 
Q  86    G 885 
L  87    D 886 
G  88    G 887 
S  89    V 888 
F  90    I 888A 
S  91    S 889 
N  92    A 890 
C  93    C 891 
S  94    N 892 
H  95    G 893 
S  96    G 896 
R  97    G 897 
N  98    P 898 
D  99    L 899 
M 100    N 900 
C 101    C 901 
H 102    F 915 
S 103    G 916 
L 104    S 917 
G 105    G 917A 
L 106    L 918 
T 107    S 919 
C 108    C 920 
TER 
END 
