 
PFRMAT AL 
TARGET T0069 
AUTHOR 8120-3487-1357 
REMARK Matrix Used: 1rdo BS_90_25 
REMARK Matrix Used: 1afa BS_30_25  
REMARK Alignment Method Used: Quasi-Global Dynamic Programming 
METHOD Sequence-Structure alignment based on the environments 
METHOD published in: Deerfield, Holland-Minkley, Geigel, and  
METHOD Nicholas 1997. "Classification of the Environment of  
METHOD Protein Residues" J. Prot. Chem. 16:441-446. 
METHOD  
METHOD This test uses our latest (unpublished) environment  
METHOD classifications and extentions. 
MODEL  1 
PARENT 1afa_3 
A    5 A   73 
L    6 I   74 
K    7 E   75 
Q    8 V   76 
R    9 K   77 
V   10 L   78 
T   11 A   79 
I   12 N   80 
L   13 M   81 
D   14 E   82 
G   15 A   83 
H   16 E   84 
L   17 I   85 
R   18 N   86 
R   19 T   87 
F   20 L   88 
Q   21 K   89 
N   22 S   90 
A   23 K   91 
F   24 L   92 
S   25 E   93 
Q   26 L   94 
Y   27 T   95 
K   28 N   96 
K   29 K   97 
A   30 L   98 
V   31 H   99 
L   32 A  100 
F   33 F  101 
P   34 S  102 
D   35 M  103 
G   36 G  104 
Q   37 K  105 
A   38 K  106 
V   39 S  107 
G   40 G  108 
E   41 K  109 
TER 
END 
