PFRMAT AL 
TARGET t0062 
AUTHOR 8120-3487-1357 
REMARK Matrix Used: BS_30_25%  
REMARK Alignment Method Used: Quasi-Global Dynamic Programming 
METHOD Sequence-Structure alignment based on the environments 
METHOD published in: Deerfield, Holland-Minkley, Geigel, and  
METHOD Nicholas 1997. "Classification of the Environment of  
METHOD Protein Residues" J. Prot. Chem. 16:441-446. 
METHOD  
METHOD This test uses our latest (unpublished) environment  
METHOD classifications and extentions. 
MODEL  1 
PARENT 1ucb_H 
T    1 Q  203 
T    2 T  205 
L    3 Y  206 
S    4 I  207 
C    5 C  208 
K    6 N  209 
V    7 V  210 
T    8 N  211 
S    9 H  212 
V   10 K  213 
E   11 P  214 
A   12 S  215 
I   13 N  216 
T   14 T  217 
D   15 K  218 
T   16 V  219 
V   17 D  220 
Y   18 K  221 
R   19 R  222 
V   20 V  223 
R   21 E  226 
I   22 P  227 
TER 
END 
