 
PFRMAT AL 
TARGET T0051 
AUTHOR 8120-3487-1357 
REMARK Matrix Used:  BS_30_25%  
REMARK Alignment Method Used: Quasi-Global Dynamic Programming 
METHOD Sequence-Structure alignment based on the environments 
METHOD published in: Deerfield, Holland-Minkley, Geigel, and  
METHOD Nicholas 1997. "Classification of the Environment of  
METHOD Protein Residues" J. Prot. Chem. 16:441-446. 
METHOD  
METHOD This test uses our latest (unpublished) environment  
METHOD classifications and extentions. 
MODEL  1 
PARENT 1hlo_A 
M    1 N   19 
E    2 A   20 
L    3 L   21 
K    4 E   22 
N    5 R   23 
K    6 K   24 
K    7 R   25 
W    8 R   26 
T    9 D   27 
D   10 H   28 
E   11 I   29 
E   12 K   30 
F   13 F   33 
H   14 H   34 
K   15 S   35 
Q   16 L   36 
R   17 R   37 
E   18 D   38 
E   19 S   39 
V   20 V   40 
L   21 L   43 
Q   22 Q   44 
Q   23 G   45 
W   24 E   46 
P   25 K   47 
T   26 A   48 
G   27 S   49 
K   28 R   50 
E   29 A   51 
V   30 Q   52 
D   31 I   53 
L   32 L   54 
Q   33 D   55 
E   34 K   56 
A   35 A   57 
V   36 T   58 
D   37 E   59 
Y   38 Y   60 
L   39 I   61 
K   40 Q   62 
K   41 Y   63 
I   42 M   64 
P   43 R   65 
A   44 R   66 
E   45 K   67 
K   46 N   68 
N   47 H   69 
F   48 T   70 
A   49 H   71 
E   50 Q   72 
K   51 Q   73 
L   52 D   74 
V   53 I   75 
L   54 D   76 
A   55 D   77 
K   56 L   78 
K   57 K   79 
K   58 R   80 
G   59 Q   81 
I   60 N   82 
TER 
END 
