
============================== Collecting inputs ==============================


============================== Collecting inputs ==============================


============================== Collecting inputs ==============================


============================== Collecting inputs ==============================


============================== Collecting inputs ==============================


============================== Collecting inputs ==============================


============================== Collecting inputs ==============================


============================== Collecting inputs ==============================


============================== Collecting inputs ==============================


============================== Collecting inputs ==============================


============================== Collecting inputs ==============================


============================== Collecting inputs ==============================


============================== Collecting inputs ==============================


============================== Collecting inputs ==============================


============================== Collecting inputs ==============================


============================== Collecting inputs ==============================


============================== Collecting inputs ==============================


============================== Collecting inputs ==============================


============================== Collecting inputs ==============================


============================== Collecting inputs ==============================


============================== Collecting inputs ==============================


============================== Collecting inputs ==============================


============================== Collecting inputs ==============================


============================== Collecting inputs ==============================


============================== Collecting inputs ==============================


============================== Collecting inputs ==============================


============================== Collecting inputs ==============================


============================== Collecting inputs ==============================


============================== Collecting inputs ==============================


============================== Collecting inputs ==============================


============================== Collecting inputs ==============================


============================== Collecting inputs ==============================


============================== Collecting inputs ==============================


============================== Collecting inputs ==============================


============================== Collecting inputs ==============================


============================== Collecting inputs ==============================

Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  

Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  

Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  

Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  

Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  

Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  

Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  

Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  

Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  

Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  

Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  

Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  

Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  

Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  

Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  

Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  

Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  

Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  

Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  

Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  

Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  

Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  

Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  

Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  

Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  

Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  

Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  

Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  

Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  

Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  

Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  

Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  

Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  

Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  

Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  

Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  


  Symmetric amino acids flipped
    Residue "A GLU    8": "OE1" <-> "OE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   24": "OE1" <-> "OE2"
    Residue "A GLU   32": "OE1" <-> "OE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A TYR   68": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU   75": "OE1" <-> "OE2"
    Residue "A TYR   81": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ASP   88": "OD1" <-> "OD2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""

  Symmetric amino acids flipped
    Residue "A GLU    8": "OE1" <-> "OE2"
    Residue "A TYR   12": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A PHE   15": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A PHE   67": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR   68": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR   91": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ASP  116": "OD1" <-> "OD2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""

  Symmetric amino acids flipped
    Residue "A GLU    8": "OE1" <-> "OE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ASP   47": "OD1" <-> "OD2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A PHE   67": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR   68": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR   81": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR   89": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR   91": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ASP  103": "OD1" <-> "OD2"
    Residue "A ASP  118": "OD1" <-> "OD2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""

  Symmetric amino acids flipped
    Residue "A GLU    8": "OE1" <-> "OE2"
    Residue "A TYR   12": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU   16": "OE1" <-> "OE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ASP   29": "OD1" <-> "OD2"
    Residue "A ASP   44": "OD1" <-> "OD2"
    Residue "A GLU   55": "OE1" <-> "OE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A TYR   81": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU   84": "OE1" <-> "OE2"
    Residue "A TYR   89": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR   91": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ASP  118": "OD1" <-> "OD2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""

  Symmetric amino acids flipped
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ASP   47": "OD1" <-> "OD2"
    Residue "A GLU   49": "OE1" <-> "OE2"
    Residue "A GLU   55": "OE1" <-> "OE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ASP   88": "OD1" <-> "OD2"
    Residue "A TYR   89": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR   91": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU  120": "OE1" <-> "OE2"
    Residue "A GLU  123": "OE1" <-> "OE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU  133": "OE1" <-> "OE2"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""

  Symmetric amino acids flipped
    Residue "A GLU    8": "OE1" <-> "OE2"
    Residue "A TYR   12": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU   16": "OE1" <-> "OE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   55": "OE1" <-> "OE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A PHE   67": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU   84": "OE1" <-> "OE2"
    Residue "A TYR   89": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU  120": "OE1" <-> "OE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""

  Symmetric amino acids flipped
    Residue "A GLU    8": "OE1" <-> "OE2"
    Residue "A TYR   12": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A PHE   15": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ASP   36": "OD1" <-> "OD2"
    Residue "A ASP   47": "OD1" <-> "OD2"
    Residue "A GLU   49": "OE1" <-> "OE2"
    Residue "A GLU   55": "OE1" <-> "OE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ASP   74": "OD1" <-> "OD2"
    Residue "A TYR   91": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU  120": "OE1" <-> "OE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""

  Symmetric amino acids flipped
    Residue "A GLU    8": "OE1" <-> "OE2"
    Residue "A TYR   12": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU   16": "OE1" <-> "OE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A TYR   50": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A PHE   67": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ASP   74": "OD1" <-> "OD2"
    Residue "A GLU   75": "OE1" <-> "OE2"
    Residue "A TYR   81": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ASP   88": "OD1" <-> "OD2"
    Residue "A ASP   95": "OD1" <-> "OD2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU  123": "OE1" <-> "OE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU  133": "OE1" <-> "OE2"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""

  Symmetric amino acids flipped
    Residue "A GLU    8": "OE1" <-> "OE2"
    Residue "A GLU   16": "OE1" <-> "OE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   32": "OE1" <-> "OE2"
    Residue "A GLU   55": "OE1" <-> "OE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A TYR   68": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR   89": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ASP  116": "OD1" <-> "OD2"
    Residue "A GLU  120": "OE1" <-> "OE2"
    Residue "A GLU  123": "OE1" <-> "OE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU  133": "OE1" <-> "OE2"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""

  Symmetric amino acids flipped
    Residue "A GLU   16": "OE1" <-> "OE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   24": "OE1" <-> "OE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   75": "OE1" <-> "OE2"
    Residue "A GLU   84": "OE1" <-> "OE2"
    Residue "A ASP  116": "OD1" <-> "OD2"
    Residue "A GLU  123": "OE1" <-> "OE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU  133": "OE1" <-> "OE2"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""

  Symmetric amino acids flipped
    Residue "A GLU    8": "OE1" <-> "OE2"
    Residue "A TYR   12": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU   16": "OE1" <-> "OE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   32": "OE1" <-> "OE2"
    Residue "A PHE   45": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A PHE   67": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR   68": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU   84": "OE1" <-> "OE2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU  120": "OE1" <-> "OE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""

  Symmetric amino acids flipped
    Residue "A GLU    8": "OE1" <-> "OE2"
    Residue "A GLU   16": "OE1" <-> "OE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   55": "OE1" <-> "OE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   75": "OE1" <-> "OE2"
    Residue "A GLU   84": "OE1" <-> "OE2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ASP  116": "OD1" <-> "OD2"
    Residue "A GLU  120": "OE1" <-> "OE2"
    Residue "A GLU  123": "OE1" <-> "OE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU  133": "OE1" <-> "OE2"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""

  Symmetric amino acids flipped
    Residue "A GLU    8": "OE1" <-> "OE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   24": "OE1" <-> "OE2"
    Residue "A ASP   29": "OD1" <-> "OD2"
    Residue "A ASP   36": "OD1" <-> "OD2"
    Residue "A ASP   44": "OD1" <-> "OD2"
    Residue "A TYR   50": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU   55": "OE1" <-> "OE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A PHE   67": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR   81": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU   84": "OE1" <-> "OE2"
    Residue "A TYR   91": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ASP   95": "OD1" <-> "OD2"
    Residue "A ASP  116": "OD1" <-> "OD2"
    Residue "A GLU  120": "OE1" <-> "OE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""

  Symmetric amino acids flipped
    Residue "A GLU    8": "OE1" <-> "OE2"
    Residue "A GLU   16": "OE1" <-> "OE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A PHE   45": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU   55": "OE1" <-> "OE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A PHE   67": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU   84": "OE1" <-> "OE2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ASP  116": "OD1" <-> "OD2"
    Residue "A GLU  120": "OE1" <-> "OE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""

  Symmetric amino acids flipped
    Residue "A TYR   12": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A PHE   15": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   24": "OE1" <-> "OE2"
    Residue "A GLU   32": "OE1" <-> "OE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A TYR   68": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ASP   95": "OD1" <-> "OD2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU  123": "OE1" <-> "OE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU  133": "OE1" <-> "OE2"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""

  Symmetric amino acids flipped
    Residue "A GLU    8": "OE1" <-> "OE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   24": "OE1" <-> "OE2"
    Residue "A GLU   32": "OE1" <-> "OE2"
    Residue "A GLU   49": "OE1" <-> "OE2"
    Residue "A GLU   55": "OE1" <-> "OE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A PHE   67": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR   68": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ASP   74": "OD1" <-> "OD2"
    Residue "A GLU   84": "OE1" <-> "OE2"
    Residue "A TYR  111": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ASP  118": "OD1" <-> "OD2"
    Residue "A GLU  120": "OE1" <-> "OE2"
    Residue "A GLU  123": "OE1" <-> "OE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU  133": "OE1" <-> "OE2"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""

  Symmetric amino acids flipped
    Residue "A GLU    8": "OE1" <-> "OE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ASP   47": "OD1" <-> "OD2"
    Residue "A GLU   49": "OE1" <-> "OE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A TYR   81": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU   84": "OE1" <-> "OE2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU  120": "OE1" <-> "OE2"
    Residue "A GLU  123": "OE1" <-> "OE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU  133": "OE1" <-> "OE2"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""

  Symmetric amino acids flipped
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   24": "OE1" <-> "OE2"
    Residue "A GLU   32": "OE1" <-> "OE2"
    Residue "A ASP   47": "OD1" <-> "OD2"
    Residue "A GLU   49": "OE1" <-> "OE2"
    Residue "A TYR   50": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU   55": "OE1" <-> "OE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A PHE   67": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR   68": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ASP   74": "OD1" <-> "OD2"
    Residue "A GLU   75": "OE1" <-> "OE2"
    Residue "A TYR   81": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ASP   88": "OD1" <-> "OD2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU  120": "OE1" <-> "OE2"
    Residue "A GLU  123": "OE1" <-> "OE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""

  Symmetric amino acids flipped
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ASP   44": "OD1" <-> "OD2"
    Residue "A GLU   49": "OE1" <-> "OE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ASP   88": "OD1" <-> "OD2"
    Residue "A TYR   89": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU  120": "OE1" <-> "OE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""

  Symmetric amino acids flipped
    Residue "A GLU    8": "OE1" <-> "OE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A PHE   45": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU   49": "OE1" <-> "OE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A TYR   81": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU   84": "OE1" <-> "OE2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU  120": "OE1" <-> "OE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""

  Symmetric amino acids flipped
    Residue "A GLU    8": "OE1" <-> "OE2"
    Residue "A TYR   12": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A PHE   15": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   32": "OE1" <-> "OE2"
    Residue "A GLU   49": "OE1" <-> "OE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ASP   88": "OD1" <-> "OD2"
    Residue "A TYR   89": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR   91": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ASP   95": "OD1" <-> "OD2"
    Residue "A GLU  123": "OE1" <-> "OE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU  133": "OE1" <-> "OE2"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""

  Symmetric amino acids flipped
    Residue "A TYR   12": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   24": "OE1" <-> "OE2"
    Residue "A GLU   32": "OE1" <-> "OE2"
    Residue "A ASP   44": "OD1" <-> "OD2"
    Residue "A GLU   55": "OE1" <-> "OE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A TYR   68": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU   84": "OE1" <-> "OE2"
    Residue "A TYR   89": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ASP  110": "OD1" <-> "OD2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""

  Symmetric amino acids flipped
    Residue "A GLU    8": "OE1" <-> "OE2"
    Residue "A TYR   12": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   24": "OE1" <-> "OE2"
    Residue "A GLU   32": "OE1" <-> "OE2"
    Residue "A GLU   49": "OE1" <-> "OE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ASP   74": "OD1" <-> "OD2"
    Residue "A TYR   81": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ASP   88": "OD1" <-> "OD2"
    Residue "A TYR   89": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ASP  116": "OD1" <-> "OD2"
    Residue "A GLU  120": "OE1" <-> "OE2"
    Residue "A GLU  123": "OE1" <-> "OE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""

  Symmetric amino acids flipped
    Residue "A GLU    8": "OE1" <-> "OE2"
    Residue "A TYR   12": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A PHE   45": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU   55": "OE1" <-> "OE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A TYR   81": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR   89": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR   91": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ASP  118": "OD1" <-> "OD2"
    Residue "A GLU  123": "OE1" <-> "OE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""

  Symmetric amino acids flipped
    Residue "A GLU    8": "OE1" <-> "OE2"
    Residue "A TYR   12": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A PHE   15": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   32": "OE1" <-> "OE2"
    Residue "A GLU   49": "OE1" <-> "OE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ASP   88": "OD1" <-> "OD2"
    Residue "A TYR   89": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR   91": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ASP   95": "OD1" <-> "OD2"
    Residue "A GLU  123": "OE1" <-> "OE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU  133": "OE1" <-> "OE2"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""

  Symmetric amino acids flipped
    Residue "A GLU    8": "OE1" <-> "OE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   24": "OE1" <-> "OE2"
    Residue "A ASP   36": "OD1" <-> "OD2"
    Residue "A GLU   49": "OE1" <-> "OE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A PHE   67": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU   84": "OE1" <-> "OE2"
    Residue "A TYR   89": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU  133": "OE1" <-> "OE2"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""

  Symmetric amino acids flipped
    Residue "A GLU    8": "OE1" <-> "OE2"
    Residue "A TYR   12": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU   16": "OE1" <-> "OE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ASP   36": "OD1" <-> "OD2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A PHE   67": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU   75": "OE1" <-> "OE2"
    Residue "A GLU   84": "OE1" <-> "OE2"
    Residue "A TYR   89": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR   91": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ASP  103": "OD1" <-> "OD2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU  120": "OE1" <-> "OE2"
    Residue "A GLU  123": "OE1" <-> "OE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""

  Symmetric amino acids flipped
    Residue "A TYR   12": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   24": "OE1" <-> "OE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A TYR   81": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU   84": "OE1" <-> "OE2"
    Residue "A ASP   88": "OD1" <-> "OD2"
    Residue "A TYR   89": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR   91": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ASP  116": "OD1" <-> "OD2"
    Residue "A GLU  120": "OE1" <-> "OE2"
    Residue "A GLU  123": "OE1" <-> "OE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""

  Symmetric amino acids flipped
    Residue "A GLU    8": "OE1" <-> "OE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   24": "OE1" <-> "OE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A PHE   67": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""

  Symmetric amino acids flipped
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A TYR   50": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A PHE   67": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR   68": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU   75": "OE1" <-> "OE2"
    Residue "A TYR   81": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU   84": "OE1" <-> "OE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""

  Symmetric amino acids flipped
    Residue "A TYR   12": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A PHE   15": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ASP   36": "OD1" <-> "OD2"
    Residue "A TYR   50": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU   55": "OE1" <-> "OE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A PHE   67": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU   75": "OE1" <-> "OE2"
    Residue "A TYR   81": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU   84": "OE1" <-> "OE2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU  120": "OE1" <-> "OE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""

  Symmetric amino acids flipped
    Residue "A PHE   15": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   24": "OE1" <-> "OE2"
    Residue "A GLU   32": "OE1" <-> "OE2"
    Residue "A GLU   49": "OE1" <-> "OE2"
    Residue "A TYR   50": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU   55": "OE1" <-> "OE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A TYR   68": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR   89": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU  120": "OE1" <-> "OE2"
    Residue "A GLU  123": "OE1" <-> "OE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU  133": "OE1" <-> "OE2"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""

  Symmetric amino acids flipped
    Residue "A GLU    8": "OE1" <-> "OE2"
    Residue "A TYR   12": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   24": "OE1" <-> "OE2"
    Residue "A GLU   32": "OE1" <-> "OE2"
    Residue "A ASP   47": "OD1" <-> "OD2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A PHE   67": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU   75": "OE1" <-> "OE2"
    Residue "A TYR   91": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU  120": "OE1" <-> "OE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""

  Symmetric amino acids flipped
    Residue "A TYR   12": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A TYR   89": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR   91": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ASP   95": "OD1" <-> "OD2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU  120": "OE1" <-> "OE2"
    Residue "A GLU  123": "OE1" <-> "OE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""

  Symmetric amino acids flipped
    Residue "A GLU    8": "OE1" <-> "OE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   55": "OE1" <-> "OE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   84": "OE1" <-> "OE2"
    Residue "A ASP   88": "OD1" <-> "OD2"
    Residue "A TYR   89": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR   91": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""

  Symmetric amino acids flipped
    Residue "A GLU    8": "OE1" <-> "OE2"
    Residue "A TYR   12": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A PHE   15": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ASP   36": "OD1" <-> "OD2"
    Residue "A ASP   44": "OD1" <-> "OD2"
    Residue "A TYR   50": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A TYR   81": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ASP   88": "OD1" <-> "OD2"
    Residue "A TYR   89": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR   91": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ASP  116": "OD1" <-> "OD2"
    Residue "A GLU  120": "OE1" <-> "OE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'PTRANS': 7, 'TRANS': 131}
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'CIS': 2, 'PTRANS': 7, 'TRANS': 129}
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'PTRANS': 7, 'TRANS': 131}
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'PTRANS': 7, 'TRANS': 131}
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'PTRANS': 7, 'TRANS': 131}
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'PTRANS': 7, 'TRANS': 131}
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'PTRANS': 7, 'TRANS': 131}
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'PTRANS': 7, 'TRANS': 131}
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'PTRANS': 7, 'TRANS': 131}
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'CIS': 1, 'PTRANS': 7, 'TRANS': 130}
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'PTRANS': 7, 'TRANS': 131}
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'PTRANS': 7, 'TRANS': 131}
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'PTRANS': 7, 'TRANS': 131}
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'PTRANS': 7, 'TRANS': 131}
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'PTRANS': 7, 'TRANS': 131}
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'PTRANS': 7, 'TRANS': 131}
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'CIS': 3, 'PTRANS': 7, 'TRANS': 128}
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'PTRANS': 7, 'TRANS': 131}
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'PTRANS': 7, 'TRANS': 131}
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'PCIS': 1, 'PTRANS': 6, 'TRANS': 131}
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'PCIS': 1, 'PTRANS': 6, 'TRANS': 131}
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'PCIS': 1, 'PTRANS': 6, 'TRANS': 131}
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'PTRANS': 7, 'TRANS': 131}
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'PCIS': 1, 'PTRANS': 6, 'TRANS': 131}
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'PTRANS': 7, 'TRANS': 131}
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'CIS': 1, 'PCIS': 1, 'PTRANS': 6, 'TRANS': 130}
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'PTRANS': 7, 'TRANS': 131}
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'PTRANS': 7, 'TRANS': 131}
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'PTRANS': 7, 'TRANS': 131}
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'CIS': 2, 'PCIS': 1, 'PTRANS': 6, 'TRANS': 129}
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'PTRANS': 7, 'TRANS': 131}
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'CIS': 1, 'PTRANS': 7, 'TRANS': 130}
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'PTRANS': 7, 'TRANS': 131}
  Time building chain proxies: 0.94, per 1000 atoms: 0.42
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (66.236, 48.658, 90.973, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'PTRANS': 7, 'TRANS': 131}
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'PTRANS': 7, 'TRANS': 131}
  Time building chain proxies: 0.93, per 1000 atoms: 0.42
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (61.556, 55.248, 76.038, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.
  Time building chain proxies: 0.66, per 1000 atoms: 0.30
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (118.034, 40.078, 49.087, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'PTRANS': 7, 'TRANS': 131}
  Time building chain proxies: 1.01, per 1000 atoms: 0.46
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (61.091, 39.198, 47.669, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.
  Time building chain proxies: 0.96, per 1000 atoms: 0.43
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (93.255, 47.895, 60.482, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.
  Time building chain proxies: 0.92, per 1000 atoms: 0.41
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (106.11, 47.212, 65.71, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.
  Time building chain proxies: 0.99, per 1000 atoms: 0.45
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (52.282, 41.769, 68.82, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.
  Time building chain proxies: 1.05, per 1000 atoms: 0.47
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (79.608, 54.8, 50.401, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.
  Time building chain proxies: 0.95, per 1000 atoms: 0.43
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (75.363, 47.806, 69.592, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.
  Time building chain proxies: 0.95, per 1000 atoms: 0.43
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (90.592, 51.082, 55.936, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.
  Time building chain proxies: 1.07, per 1000 atoms: 0.48
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (56.206, 31.784, 83.675, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.
  Time building chain proxies: 1.07, per 1000 atoms: 0.48
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (106.536, 53.632, 55.903, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.
  Time building chain proxies: 1.07, per 1000 atoms: 0.48
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (87.422, 40.782, 69.137, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.
  Time building chain proxies: 1.05, per 1000 atoms: 0.47
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (57.542, 52.594, 73.775, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.
  Time building chain proxies: 1.05, per 1000 atoms: 0.47
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (91.642, 47.191, 65.392, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.
  Time building chain proxies: 1.02, per 1000 atoms: 0.46
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (106.368, 63.62, 47.781, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.
  Time building chain proxies: 1.04, per 1000 atoms: 0.47
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (89.315, 38.637, 67.976, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.
  Time building chain proxies: 1.13, per 1000 atoms: 0.51
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (96.495, 39.815, 49.767, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.
  Time building chain proxies: 1.10, per 1000 atoms: 0.50
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (112.344, 55.478, 53.739, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.
  Time building chain proxies: 1.13, per 1000 atoms: 0.51
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (64.67, 40.041, 50.571, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.
  Time building chain proxies: 1.09, per 1000 atoms: 0.49
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (75.48, 65.442, 48.271, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.
  Time building chain proxies: 1.11, per 1000 atoms: 0.50
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (49.501, 60.104, 76.044, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.
  Time building chain proxies: 1.13, per 1000 atoms: 0.51
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (61.697, 62.262, 70.903, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.
  Time building chain proxies: 1.02, per 1000 atoms: 0.46
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (51.752, 49.149, 51.593, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.
  Time building chain proxies: 1.05, per 1000 atoms: 0.47
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (72.793, 48.347, 84.231, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.
  Time building chain proxies: 1.12, per 1000 atoms: 0.51
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (63.725, 64.149, 68.778, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.
  Time building chain proxies: 1.07, per 1000 atoms: 0.48
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (70.684, 47.689, 50.352, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.
  Time building chain proxies: 1.05, per 1000 atoms: 0.47
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (59.78, 49.993, 50.323, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.
  Time building chain proxies: 1.10, per 1000 atoms: 0.50
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (63.725, 64.149, 68.778, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.
  Time building chain proxies: 1.03, per 1000 atoms: 0.46
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (53.693, 35.035, 76.698, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.
  Time building chain proxies: 1.09, per 1000 atoms: 0.49
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (76.186, 31.597, 73.66, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.
  Time building chain proxies: 1.05, per 1000 atoms: 0.47
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (92.646, 41.852, 78.24, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.
  Time building chain proxies: 1.04, per 1000 atoms: 0.47
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (85.45, 44.095, 46.396, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.
  Time building chain proxies: 1.11, per 1000 atoms: 0.50
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (52.155, 53.891, 74.164, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.
  Time building chain proxies: 1.09, per 1000 atoms: 0.49
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (63.686, 33.857, 86.833, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.
  Time building chain proxies: 1.10, per 1000 atoms: 0.50
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (100.425, 35.908, 73.41, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.

  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 0.50
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 0.57 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.


  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 0.61
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 0.72 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.


  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 0.51
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 0.60 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 135
        1.23 -     1.43: 334
        1.43 -     1.63: 662
        1.63 -     1.83: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" CE1 HIS A 134 "
       model="   1" pdb=" NE2 HIS A 134 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.14e+01
  bond model="   1" pdb=" CE1 HIS A 135 "
       model="   1" pdb=" NE2 HIS A 135 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.14e+01
  bond model="   1" pdb=" CE1 HIS A 136 "
       model="   1" pdb=" NE2 HIS A 136 "
    ideal  model  delta    sigma   weight residual
    1.321  1.354 -0.033 1.00e-02 1.00e+04 1.06e+01
  bond model="   1" pdb=" CE1 HIS A 139 "
       model="   1" pdb=" NE2 HIS A 139 "
    ideal  model  delta    sigma   weight residual
    1.321  1.353 -0.032 1.00e-02 1.00e+04 1.05e+01
  bond model="   1" pdb=" CE1 HIS A 137 "
       model="   1" pdb=" NE2 HIS A 137 "
    ideal  model  delta    sigma   weight residual
    1.321  1.353 -0.032 1.00e-02 1.00e+04 1.02e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       89.74 -    98.86: 4
       98.86 -   107.97: 596
      107.97 -   117.09: 2468
      117.09 -   126.20: 971
      126.20 -   135.32: 38
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" CA  LYS A 101 "
        model="   1" pdb=" C   LYS A 101 "
        model="   1" pdb=" N   PRO A 102 "
      ideal   model   delta    sigma   weight residual
     116.90  127.53  -10.63 1.50e+00 4.44e-01 5.02e+01
  angle model="   1" pdb=" C   PRO A 114 "
        model="   1" pdb=" CA  PRO A 114 "
        model="   1" pdb=" HA  PRO A 114 "
      ideal   model   delta    sigma   weight residual
     109.00   89.74   19.26 3.00e+00 1.11e-01 4.12e+01
  angle model="   1" pdb=" N   PRO A 114 "
        model="   1" pdb=" CA  PRO A 114 "
        model="   1" pdb=" C   PRO A 114 "
      ideal   model   delta    sigma   weight residual
     112.10  127.29  -15.19 2.50e+00 1.60e-01 3.69e+01
  angle model="   1" pdb=" CG  LYS A 113 "
        model="   1" pdb=" CD  LYS A 113 "
        model="   1" pdb=" CE  LYS A 113 "
      ideal   model   delta    sigma   weight residual
     111.30  124.08  -12.78 2.30e+00 1.89e-01 3.09e+01
  angle model="   1" pdb=" CB  HIS A 138 "
        model="   1" pdb=" CG  HIS A 138 "
        model="   1" pdb=" ND1 HIS A 138 "
      ideal   model   delta    sigma   weight residual
     122.70  114.63    8.07 1.50e+00 4.44e-01 2.90e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    14.98: 968
       14.98 -    29.96: 44
       29.96 -    44.94: 15
       44.94 -    59.92: 4
       59.92 -    74.90: 1
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" CA  LYS A 113 "
           model="   1" pdb=" C   LYS A 113 "
           model="   1" pdb=" N   PRO A 114 "
           model="   1" pdb=" CA  PRO A 114 "
      ideal   model   delta  harmonic     sigma   weight residual
    -180.00 -146.95  -33.05     0      5.00e+00 4.00e-02 4.37e+01
  dihedral model="   1" pdb=" N   LEU A  99 "
           model="   1" pdb=" C   LEU A  99 "
           model="   1" pdb=" CA  LEU A  99 "
           model="   1" pdb=" CB  LEU A  99 "
      ideal   model   delta  harmonic     sigma   weight residual
     122.80  137.30  -14.50     0      2.50e+00 1.60e-01 3.37e+01
  dihedral model="   1" pdb=" C   PRO A 102 "
           model="   1" pdb=" N   PRO A 102 "
           model="   1" pdb=" CA  PRO A 102 "
           model="   1" pdb=" CB  PRO A 102 "
      ideal   model   delta  harmonic     sigma   weight residual
    -120.70 -106.62  -14.08     0      2.50e+00 1.60e-01 3.17e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.002 -    0.129: 148
       0.129 -    0.256: 19
       0.256 -    0.383: 7
       0.383 -    0.510: 1
         Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 117
        1.23 -     1.43: 348
        1.43 -     1.62: 666
        1.62 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" C   PHE A  67 "
       model="   1" pdb=" N   TYR A  68 "
    ideal  model  delta    sigma   weight residual
    1.329  1.407 -0.078 1.40e-02 5.10e+03 3.07e+01
  bond model="   1" pdb=" CE1 HIS A 138 "
       model="   1" pdb=" NE2 HIS A 138 "
    ideal  model  delta    sigma   weight residual
    1.321  1.357 -0.036 1.00e-02 1.00e+04 1.31e+01
  bond model="   1" pdb=" CE1 HIS A 137 "
       model="   1" pdb=" NE2 HIS A 137 "
    ideal  model  delta    sigma   weight residual
    1.321  1.357 -0.036 1.00e-02 1.00e+04 1.27e+01
  bond model="   1" pdb=" CE1 HIS A  43 "
       model="   1" pdb=" NE2 HIS A  43 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.17e+01
  bond model="   1" pdb=" C   PHE A  67 "
       model="   1" pdb=" O   PHE A  67 "
    ideal  model  delta    sigma   weight residual
    1.231  1.163  0.068 2.00e-02 2.50e+03 1.17e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       96.52 -   104.14: 31
      104.14 -   111.76: 2505
      111.76 -   119.38: 704
      119.38 -   127.00: 811
      127.00 -   134.63: 26
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" C   HIS A 136 "
        model="   1" pdb=" N   HIS A 137 "
        model="   1" pdb=" CA  HIS A 137 "
      ideal   model   delta    sigma   weight residual
     121.70  134.63  -12.93 1.80e+00 3.09e-01 5.16e+01
  angle model="   1" pdb=" C   HIS A 138 "
        model="   1" pdb=" N   HIS A 139 "
        model="   1" pdb=" CA  HIS A 139 "
      ideal   model   delta    sigma   weight residual
     121.70  133.83  -12.13 1.80e+00 3.09e-01 4.54e+01
  angle model="   1" pdb=" CA  LYS A 101 "
        model="   1" pdb=" C   LYS A 101 "
        model="   1" pdb=" N   PRO A 102 "
      ideal   model   delta    sigma   weight residual
     116.90  125.90   -9.00 1.50e+00 4.44e-01 3.60e+01
  angle model="   1" pdb=" CA  HIS A 139 "
        model="   1" pdb=" CB  HIS A 139 "
        model="   1" pdb=" CG  HIS A 139 "
      ideal   model   delta    sigma   weight residual
     113.80  119.69   -5.89 1.00e+00 1.00e+00 3.47e+01
  angle model="   1" pdb=" CA  HIS A 136 "
        model="   1" pdb=" CB  HIS A 136 "
        model="   1" pdb=" CG  HIS A 136 "
      ideal   model   delta    sigma   weight residual
     113.80  119.36   -5.56 1.00e+00 1.00e+00 3.09e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    14.29: 973
       14.29 -    28.59: 43
       28.59 -    42.88: 10
       42.88 -    57.18: 4
       57.18 -    71.47: 2
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" CA  HIS A 136 "
           model="   1" pdb=" C   HIS A 136 "
           model="   1" pdb=" N   HIS A 137 "
           model="   1" pdb=" CA  HIS A 137 "
      ideal   model   delta  harmonic     sigma   weight residual
       0.00   29.49  -29.49     0      5.00e+00 4.00e-02 3.48e+01
  dihedral model="   1" pdb=" CA  ARG A  21 "
           model="   1" pdb=" C   ARG A  21 "
           model="   1" pdb=" N   PRO A  22 "
           model="   1" pdb=" CA  PRO A  22 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  152.04   27.96     0      5.00e+00 4.00e-02 3.13e+01
  dihedral model="   1" pdb=" CA  HIS A 138 "
           model="   1" pdb=" C   HIS A 138 "
           model="   1" pdb=" N   HIS A 139 "
           model="   1" pdb=" CA  HIS A 139 "
      ideal   model   delta  harmonic     sigma   weight residual
       0.00   24.32  -24.32     0      5.00e+00 4.00e-02 2.37e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.001 -    0.070: 112
       0.070 -    0.139: 42
       0.139 -    0.209: 15
       0.209 -    0.278: 5
     0.510 -    0.637: 1
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  PRO A 114 "
            model="   1" pdb=" N   PRO A 114 "
            model="   1" pdb=" C   PRO A 114 "
            model="   1" pdb=" CB  PRO A 114 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.72    2.08    0.64 2.00e-01 2.50e+01 1.01e+01
  chirality model="   1" pdb=" CA  LEU A  99 "
            model="   1" pdb=" N   LEU A  99 "
            model="   1" pdb=" C   LEU A  99 "
            model="   1" pdb=" CB  LEU A  99 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.00    0.51 2.00e-01 2.50e+01 6.45e+00
  chirality model="   1" pdb=" CA  HIS A 135 "
            model="   1" pdb=" N   HIS A 135 "
            model="   1" pdb=" C   HIS A 135 "
            model="   1" pdb=" CB  HIS A 135 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.13    0.38 2.00e-01 2.50e+01 3.65e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A 111 "   -0.237 2.00e-02 2.50e+03   9.31e-02 2.60e+02
        model="   1" pdb=" CG  TYR A 111 "    0.064 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A 111 "    0.044 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A 111 "    0.074 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A 111 "    0.025 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A 111 "   -0.013 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A 111 "    0.008 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A 111 "   -0.087 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A 111 "    0.045 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A 111 "    0.136 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A 111 "    0.024 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A 111 "   -0.083 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  50 "   -0.149 2.00e-02 2.50e+03   6.85e-02 1.41e+02
        model="   1" pdb=" CG  TYR A  50 "    0.021 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  50 "    0.014 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  50 "    0.057 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  50 "    0.026 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  50 "   -0.016 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  50 "   -0.007 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  50 "   -0.064 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  50 "    0.002 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  50 "    0.131 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  50 "    0.055 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  50 "   -0.070 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A 105 "    0.079 2.00e-02 2.50e+03   6.71e-02 1.35e+02
        model="   1" pdb=" CG  TYR A 105 "    0.038 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A 105 "   -0.018 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A 105 "    0.002 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A 105 "   -0.022 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A 105 "   -0.045 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A 105 "    0.011 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A 105 "    0.159 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A 105 "   -0.052 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A 105 "    0.011 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A 105 "   -0.047 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A 105 "   -0.115 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.74 -     2.31: 368
        2.31 -     2.89: 5138  0.278 -    0.347: 2
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  HIS A 139 "
            model="   1" pdb=" N   HIS A 139 "
            model="   1" pdb=" C   HIS A 139 "
            model="   1" pdb=" CB  HIS A 139 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.86   -0.35 2.00e-01 2.50e+01 3.01e+00
  chirality model="   1" pdb=" CA  ASP A  95 "
            model="   1" pdb=" N   ASP A  95 "
            model="   1" pdb=" C   ASP A  95 "
            model="   1" pdb=" CB  ASP A  95 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.21    0.30 2.00e-01 2.50e+01 2.22e+00
  chirality model="   1" pdb=" CA  LEU A  70 "
            model="   1" pdb=" N   LEU A  70 "
            model="   1" pdb=" C   LEU A  70 "
            model="   1" pdb=" CB  LEU A  70 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.26    0.25 2.00e-01 2.50e+01 1.61e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  50 "   -0.067 2.00e-02 2.50e+03   5.61e-02 9.45e+01
        model="   1" pdb=" CG  TYR A  50 "   -0.022 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  50 "   -0.012 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  50 "    0.037 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  50 "    0.034 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  50 "   -0.015 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  50 "   -0.019 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  50 "   -0.061 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  50 "   -0.037 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  50 "    0.111 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  50 "    0.099 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  50 "   -0.047 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  HIS A 137 "   -0.110 2.00e-02 2.50e+03   6.53e-02 8.53e+01
        model="   1" pdb=" CG  HIS A 137 "    0.095 2.00e-02 2.50e+03
        model="   1" pdb=" ND1 HIS A 137 "    0.088 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 HIS A 137 "    0.019 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 HIS A 137 "   -0.010 2.00e-02 2.50e+03
        model="   1" pdb=" NE2 HIS A 137 "   -0.049 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 HIS A 137 "    0.014 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 HIS A 137 "   -0.047 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  PHE A  15 "   -0.107 2.00e-02 2.50e+03   5.33e-02 8.52e+01
        model="   1" pdb=" CG  PHE A  15 "   -0.008 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 PHE A  15 "    0.023 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 PHE A  15 "    0.022 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 PHE A  15 "    0.014 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 PHE A  15 "    0.015 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  PHE A  15 "   -0.037 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 PHE A  15 "    0.051 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 PHE A  15 "    0.047 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 PHE A  15 "    0.041 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 PHE A  15 "    0.046 2.00e-02 2.50e+03
        model="   1" pdb=" HZ  PHE A  15 "   -0.106 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.74 -     2.31: 331
        2.31 -     2.88: 5018
        2.88 -     3.46: 4896
        3.46 -     4.03: 6241
        4.03 -     4.60: 9333
  Nonbonded interactions: 25819
  Sorted by model distance:
  nonbonded model="   1" pdb=" OD2 ASP A  36 "
            model="   1" pdb=" HH  TYR A  68 "
     model   vdw
     1.738 1.850
        2.89 -     3.46: 5127
        3.46 -     4.03: 6669
        4.03 -     4.60: 10081
  Nonbonded interactions: 27383
  Sorted by model distance:
  nonbonded model="   1" pdb=" OD2 ASP A  36 "
            model="   1" pdb=" HZ3 LYS A  40 "
     model   vdw
     1.742 1.850
  nonbonded model="   1" pdb=" OD2 ASP A  47 "
            model="   1" pdb=" HZ2 LYS A 113 "
     model   vdw
     1.810 1.850
  nonbonded model="   1" pdb=" H   THR A   5 "
            model="   1" pdb=" OE1 GLU A   8 "
     model   vdw
     1.821 1.850
  nonbonded model="   1" pdb=" HZ1 LYS A  10 "
            model="   1" pdb=" OD1 ASP A  23 "
     model   vdw
     1.873 1.850
  nonbonded model="   1" pdb="HH22 ARG A  21 "
            model="   1" pdb="HE22 GLN A  66 "
     model   vdw
     1.890 2.100
  ... (remaining 27378 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  nonbonded model="   1" pdb=" OE2 GLU A  55 "
            model="   1" pdb="HH21 ARG A  58 "
     model   vdw
     1.762 1.850
  nonbonded model="   1" pdb=" OE1 GLU A  55 "
            model="   1" pdb=" HE  ARG A  58 "
     model   vdw
     1.762 1.850
  nonbonded model="   1" pdb=" O   ILE A  71 "
            model="   1" pdb=" H   ASP A  74 "
     model   vdw
     1.855 1.850
  nonbonded model="   1" pdb=" HD2 TYR A  91 "
            model="   1" pdb="HE22 GLN A 100 "
     model   vdw
     1.863 2.100
  ... (remaining 25814 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.
  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 112
        1.23 -     1.43: 356
        1.43 -     1.62: 663
        1.62 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" C   ILE A   4 "
       model="   1" pdb=" O   ILE A   4 "
    ideal  model  delta    sigma   weight residual
    1.231  1.148  0.083 2.00e-02 2.50e+03 1.74e+01
  bond model="   1" pdb=" CE1 HIS A 139 "
       model="   1" pdb=" NE2 HIS A 139 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.14e+01
  bond model="   1" pdb=" CE1 HIS A  43 "
       model="   1" pdb=" NE2 HIS A  43 "
    ideal  model  delta    sigma   weight residual
    1.321  1.354 -0.033 1.00e-02 1.00e+04 1.11e+01
  bond model="   1" pdb=" CE1 HIS A 135 "
       model="   1" pdb=" NE2 HIS A 135 "
    ideal  model  delta    sigma   weight residual
    1.321  1.354 -0.033 1.00e-02 1.00e+04 1.10e+01
  bond model="   1" pdb=" CD  ARG A 127 "
       model="   1" pdb=" NE  ARG A 127 "
    ideal  model  delta    sigma   weight residual
    1.458  1.504 -0.046 1.40e-02 5.10e+03 1.10e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       93.97 -   101.67: 9
      101.67 -   109.38: 1144
      109.38 -   117.08: 1898
      117.08 -   124.78: 950
      124.78 -   132.48: 76
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" N   PRO A 114 "
        model="   1" pdb=" CA  PRO A 114 "
        model="   1" pdb=" C   PRO A 114 "
      ideal   model   delta    sigma   weight residual
     112.10  128.04  -15.94 2.50e+00 1.60e-01 4.06e+01
  angle model="   1" pdb=" C   LYS A 113 "
        model="   1" pdb=" CA  LYS A 113 "
        model="   1" pdb=" CB  LYS A 113 "
      ideal   model   delta    sigma   weight residual
     110.10  120.39  -10.29 1.90e+00 2.77e-01 2.93e+01
  angle model="   1" pdb=" C   PRO A 114 "
        model="   1" pdb=" CA  PRO A 114 "
        model="   1" pdb=" HA  PRO A 114 "
      ideal   model   delta    sigma   weight residual
     109.00   93.97   15.03 3.00e+00 1.11e-01 2.51e+01
  angle model="   1" pdb=" CB  PRO A 114 "
        model="   1" pdb=" CA  PRO A 114 "
        model="   1" pdb=" HA  PRO A 114 "
      ideal   model   delta    sigma   weight residual
     109.00  123.64  -14.64 3.00e+00 1.11e-01 2.38e+01
  angle model="   1" pdb=" O   ILE A   4 "
        model="   1" pdb=" C   ILE A   4 "
        model="   1" pdb=" N   THR A   5 "
      ideal   model   delta    sigma   weight residual
     123.00  115.61    7.39 1.60e+00 3.91e-01 2.13e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    14.35: 975
       14.35 -    28.70: 39
       28.70 -    43.06: 13
       43.06 -    57.41: 3
       57.41 -    71.76: 2
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" CA  PHE A  45 "
           model="   1" pdb=" C   PHE A  45 "
           model="   1" pdb=" N   SER A  46 "
           model="   1" pdb=" CA  SER A  46 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  140.43   39.57     0      5.00e+00 4.00e-02 6.26e+01
  dihedral model="   1" pdb=" CA  MET A 128 "
           model="   1" pdb=" C   MET A 128 "
           model="   1" pdb=" N   ARG A 129 "
           model="   1" pdb=" CA  ARG A 129 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  142.03   37.97     0      5.00e+00 4.00e-02 5.77e+01
  dihedral model="   1" pdb=" CA  ARG A 129 "
           model="   1" pdb=" C   ARG A 129 "
           model="   1" pdb=" N   SER A 130 "
           model="   1" pdb=" CA  SER A 130 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  152.36   27.64     0      5.00e+00 4.00e-02 3.05e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.000 -    0.115: 138
       0.115 -    0.231: 29
       0.231 -    0.346: 7
       0.346 -    0.461: 1
       0.461 -    0.576: 1
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  PRO A 114 "
            model="   1" pdb=" N   PRO A 114 "
            model="   1" pdb=" C   PRO A 114 "
            model="   1" pdb=" CB  PRO A 114 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.72    2.14    0.58 2.00e-01 2.50e+01 8.30e+00
  chirality model="   1" pdb=" CG  LEU A   3 "
            model="   1" pdb=" CB  LEU A   3 "
            model="   1" pdb=" CD1 LEU A   3 "
            model="   1" pdb=" CD2 LEU A   3 "
    both_signs  ideal   model   delta    sigma   weight residual
      False     -2.59   -2.24   -0.35 2.00e-01 2.50e+01 3.09e+00
  chirality model="   1" pdb=" CA  THR A   5 "
            model="   1" pdb=" N   THR A   5 "
            model="   1" pdb=" C   THR A   5 "
            model="   1" pdb=" CB  THR A   5 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.53    2.20    0.33 2.00e-01 2.50e+01 2.70e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  91 "   -0.075 2.00e-02 2.50e+03   3.66e-02 4.03e+01
        model="   1" pdb=" CG  TYR A  91 "   -0.005 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  91 "    0.024 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  91 "    0.007 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  91 "    0.001 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  91 "    0.019 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  91 "   -0.001 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  91 "   -0.064 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  91 "    0.059 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  91 "    0.006 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  91 "   -0.012 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  91 "    0.041 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  PHE A  45 "    0.025 2.00e-02 2.50e+03   3.33e-02 3.33e+01
        model="   1" pdb=" CG  PHE A  45 "    0.002 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 PHE A  45 "   -0.024 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 PHE A  45 "    0.009 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 PHE A  45 "    0.021 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 PHE A  45 "   -0.013 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  PHE A  45 "   -0.001 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 PHE A  45 "   -0.071 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 PHE A  45 "    0.029 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 PHE A  45 "    0.065 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 PHE A  45 "   -0.035 2.00e-02 2.50e+03
        model="   1" pdb=" HZ  PHE A  45 "   -0.009 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  68 "    0.004 2.00e-02 2.50e+03   2.92e-02 2.56e+01
        model="   1" pdb=" CG  TYR A  68 "   -0.013 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  68 "   -0.010 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  68 "   -0.003 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  68 "    0.022 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  68 "    0.014 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  68 "    0.008 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  68 "   -0.068 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  68 "   -0.030 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  68 "   -0.006 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  68 "    0.054 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  68 "    0.028 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.72 -     2.30: 328
        2.30 -     2.87: 5011
        2.87 -     3.45: 4903
        3.45 -     4.02: 6170
        4.02 -     4.60: 9361
  Nonbonded interactions: 25773
  Sorted by model distance:
  nonbonded model="   1" pdb=" OD2 ASP A  36 "
            model="   1" pdb=" HH  TYR A  68 "
     model   vdw
     1.725 1.850
  nonbonded model="   1" pdb=" HZ1 LYS A  10 "
            model="   1" pdb=" OD1 ASP A  23 "
     model   vdw
     1.760 1.850
  nonbonded model="   1" pdb=" HB3 LYS A 113 "
            model="   1" pdb=" HD2 PRO A 114 "
     model   vdw
     1.768 2.440
  nonbonded model="   1" pdb="HG12 VAL A  18 "
            model="   1" pdb="HH21 ARG A  21 "
     model   vdw
     1.785 2.270
  nonbonded model="   1" pdb=" HB2 LEU A   2 "
            model="   1" pdb="HG22 ILE A  30 "
     model   vdw
     1.799 2.440
  ... (remaining 25768 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 0.63
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 0.72 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.


  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 0.67
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 0.76 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 115
        1.23 -     1.43: 349
        1.43 -     1.62: 667
        1.62 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" CE1 HIS A 139 "
       model="   1" pdb=" NE2 HIS A 139 "
    ideal  model  delta    sigma   weight residual
    1.321  1.354 -0.033 1.00e-02 1.00e+04 1.09e+01
  bond model="   1" pdb=" C   ILE A  77 "
       model="   1" pdb=" N   ILE A  78 "
    ideal  model  delta    sigma   weight residual
    1.329  1.375 -0.046 1.40e-02 5.10e+03 1.08e+01
  bond model="   1" pdb=" CE1 HIS A 137 "
       model="   1" pdb=" NE2 HIS A 137 "
    ideal  model  delta    sigma   weight residual
    1.321  1.353 -0.032 1.00e-02 1.00e+04 1.05e+01
  bond model="   1" pdb=" CE1 HIS A  43 "
       model="   1" pdb=" NE2 HIS A  43 "
    ideal  model  delta    sigma   weight residual
    1.321  1.353 -0.032 1.00e-02 1.00e+04 1.05e+01
  bond model="   1" pdb=" CE1 HIS A 135 "
       model="   1" pdb=" NE2 HIS A 135 "
    ideal  model  delta    sigma   weight residual
    1.321  1.353 -0.032 1.00e-02 1.00e+04 1.03e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       95.94 -   103.06: 27
      103.06 -   110.19: 2135
      110.19 -   117.31: 897
      117.31 -   124.43: 932
      124.43 -   131.56: 86
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" CA  LYS A 101 "
        model="   1" pdb=" C   LYS A 101 "
        model="   1" pdb=" N   PRO A 102 "
      ideal   model   delta    sigma   weight residual
     116.90  126.22   -9.32 1.50e+00 4.44e-01 3.86e+01
  angle model="   1" pdb=" CA  LYS A 113 "
        model="   1" pdb=" C   LYS A 113 "
        model="   1" pdb=" N   PRO A 114 "
      ideal   model   delta    sigma   weight residual
     116.90  126.09   -9.19 1.50e+00 4.44e-01 3.76e+01
  angle model="   1" pdb=" C   ILE A  77 "
        model="   1" pdb=" N   ILE A  78 "
        model="   1" pdb=" CA  ILE A  78 "
      ideal   model   delta    sigma   weight residual
     121.70  130.99   -9.29 1.80e+00 3.09e-01 2.66e+01
  angle model="   1" pdb=" N   SER A  97 "
        model="   1" pdb=" CA  SER A  97 "
        model="   1" pdb=" CB  SER A  97 "
      ideal   model   delta    sigma   weight residual
     110.50  119.12   -8.62 1.70e+00 3.46e-01 2.57e+01
  angle model="   1" pdb=" CA  TYR A  50 "
        model="   1" pdb=" C   TYR A  50 "
        model="   1" pdb=" O   TYR A  50 "
      ideal   model   delta    sigma   weight residual
     120.80  112.23    8.57 1.70e+00 3.46e-01 2.54e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    16.78: 989
       16.78 -    33.57: 30
       33.57 -    50.35: 11
       50.35 -    67.14: 0
       67.14 -    83.92: 2
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" CA  SER A  97 "
           model="   1" pdb=" C   SER A  97 "
           model="   1" pdb=" N   SER A  98 "
           model="   1" pdb=" CA  SER A  98 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  147.47   32.53     0      5.00e+00 4.00e-02 4.23e+01
  dihedral model="   1" pdb=" C   SER A  46 "
           model="   1" pdb=" N   SER A  46 "
           model="   1" pdb=" CA  SER A  46 "
           model="   1" pdb=" CB  SER A  46 "
      ideal   model   delta  harmonic     sigma   weight residual
    -122.60 -135.69   13.09     0      2.50e+00 1.60e-01 2.74e+01
  dihedral model="   1" pdb=" N   SER A  46 "
           model="   1" pdb=" C   SER A  46 "
           model="   1" pdb=" CA  SER A  46 "
           model="   1" pdb=" CB  SER A  46 "
      ideal   model   delta  harmonic     sigma   weight residual
     122.80  135.40  -12.60     0      2.50e+00 1.60e-01 2.54e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.000 -    0.103: 129
       0.103 -    0.205: 33
       0.205 -    0.307: 12
       0.307 -    0.409: 0
       0.409 -    0.512: 2
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  SER A  46 "
            model="   1" pdb=" N   SER A  46 "
            model="   1" pdb=" C   SER A  46 "
            model="   1" pdb=" CB  SER A  46 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.00    0.51 2.00e-01 2.50e+01 6.54e+00
  chirality model="   1" pdb=" CB  ILE A  51 "
            model="   1" pdb=" CA  ILE A  51 "
            model="   1" pdb=" CG1 ILE A  51 "
            model="   1" pdb=" CG2 ILE A  51 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.64    2.19    0.45 2.00e-01 2.50e+01 5.16e+00
  chirality model="   1" pdb=" CA  ILE A  78 "
            model="   1" pdb=" N   ILE A  78 "
            model="   1" pdb=" C   ILE A  78 "
            model="   1" pdb=" CB  ILE A  78 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.43    2.14    0.29 2.00e-01 2.50e+01 2.12e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  PHE A  15 "    0.158 2.00e-02 2.50e+03   8.40e-02 2.12e+02
        model="   1" pdb=" CG  PHE A  15 "    0.034 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 PHE A  15 "   -0.051 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 PHE A  15 "   -0.016 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 PHE A  15 "    0.002 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 PHE A  15 "   -0.035 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  PHE A  15 "    0.049 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 PHE A  15 "   -0.145 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 PHE A  15 "   -0.036 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 PHE A  15 "    0.006 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 PHE A  15 "   -0.103 2.00e-02 2.50e+03
        model="   1" pdb=" HZ  PHE A  15 "    0.138 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  81 "    0.045 2.00e-02 2.50e+03   7.46e-02 1.67e+02
        model="   1" pdb=" CG  TYR A  81 "    0.015 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  81 "    0.030 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  81 "   -0.040 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  81 "   -0.059 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  81 "    0.013 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  81 "   -0.019 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  81 "    0.098 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  81 "    0.101 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  81 "   -0.111 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  81 "   -0.145 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  81 "    0.071 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  89 "    0.109 2.00e-02 2.50e+03   7.10e-02 1.51e+02
        model="   1" pdb=" CG  TYR A  89 "    0.036 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  89 "   -0.008 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  89 "   -0.022 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  89 "   -0.043 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  89 "   -0.028 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  89 "   -0.007 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  89 "    0.173 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  89 "   -0.015 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  89 "   -0.058 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  89 "   -0.092 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  89 "   -0.045 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.61 -     2.21: 146
        2.21 -     2.81: 4401
        2.81 -     3.41: 5491
        3.41 -     4.00: 6843
        4.00 -     4.60: 9985
  Nonbonded interactions: 26866
  Sorted by model distance:
  nonbonded model="   1" pdb="HG23 ILE A  30 "
            model="   1" pdb="HD21 LEU A  61 "
     model   vdw
     1.614 2.440
  nonbonded model="   1" pdb=" HZ1 LYS A  10 "
            model="   1" pdb=" OD1 ASP A  23 "
     model   vdw
     1.738 1.850
  nonbonded model="   1" pdb=" HH  TYR A  81 "
            model="   1" pdb=" OE2 GLU A  84 "
     model   vdw
     1.755 1.850
  nonbonded model="   1" pdb=" HG  LEU A   2 "
            model="   1" pdb="HG22 ILE A  30 "
     model   vdw
     1.766 2.440
  nonbonded model="   1" pdb=" OD1 ASP A  44 "
            model="   1" pdb=" H   SER A  46 "
     model   vdw
     1.815 1.850
  ... (remaining 26861 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 0.87
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 1.00 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 134
        1.23 -     1.43: 332
        1.43 -     1.63: 665
        1.63 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" CD  ARG A  21 "
       model="   1" pdb=" NE  ARG A  21 "
    ideal  model  delta    sigma   weight residual
    1.458  1.513 -0.055 1.40e-02 5.10e+03 1.54e+01
  bond model="   1" pdb=" CD  ARG A  58 "
       model="   1" pdb=" NE  ARG A  58 "
    ideal  model  delta    sigma   weight residual
    1.458  1.510 -0.052 1.40e-02 5.10e+03 1.40e+01
  bond model="   1" pdb=" CE1 HIS A 139 "
       model="   1" pdb=" NE2 HIS A 139 "
    ideal  model  delta    sigma   weight residual
    1.321  1.357 -0.036 1.00e-02 1.00e+04 1.32e+01
  bond model="   1" pdb=" CE1 HIS A 138 "
       model="   1" pdb=" NE2 HIS A 138 "
    ideal  model  delta    sigma   weight residual
    1.321  1.356 -0.035 1.00e-02 1.00e+04 1.23e+01
  bond model="   1" pdb=" CE1 HIS A 136 "
       model="   1" pdb=" NE2 HIS A 136 "
    ideal  model  delta    sigma   weight residual
    1.321  1.356 -0.035 1.00e-02 1.00e+04 1.21e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       95.55 -   102.97: 23
      102.97 -   110.39: 2167
      110.39 -   117.81: 931
      117.81 -   125.22: 888
      125.22 -   132.64: 68
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" C   HIS A  43 "
        model="   1" pdb=" CA  HIS A  43 "
        model="   1" pdb=" CB  HIS A  43 "
      ideal   model   delta    sigma   weight residual
     110.10  101.14    8.96 1.90e+00 2.77e-01 2.22e+01
  angle model="   1" pdb=" CA  LYS A 113 "
        model="   1" pdb=" C   LYS A 113 "
        model="   1" pdb=" N   PRO A 114 "
      ideal   model   delta    sigma   weight residual
     116.90  123.91   -7.01 1.50e+00 4.44e-01 2.18e+01
  angle model="   1" pdb=" ND1 HIS A 137 "
        model="   1" pdb=" CG  HIS A 137 "
        model="   1" pdb=" CD2 HIS A 137 "
      ideal   model   delta    sigma   weight residual
     106.10  110.60   -4.50 1.00e+00 1.00e+00 2.03e+01
  angle model="   1" pdb=" ND1 HIS A  43 "
        model="   1" pdb=" CG  HIS A  43 "
        model="   1" pdb=" CD2 HIS A  43 "
      ideal   model   delta    sigma   weight residual
     106.10  110.59   -4.49 1.00e+00 1.00e+00 2.02e+01
  angle model="   1" pdb=" ND1 HIS A 138 "
        model="   1" pdb=" CG  HIS A 138 "
        model="   1" pdb=" CD2 HIS A 138 "
      ideal   model   delta    sigma   weight residual
     106.10  110.46   -4.36 1.00e+00 1.00e+00 1.90e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    11.44: 926
       11.44 -    22.88: 70
       22.88 -    34.33: 18
       34.33 -    45.77: 13
       45.77 -    57.21: 5
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" CA  GLU A 133 "
           model="   1" pdb=" C   GLU A 133 "
           model="   1" pdb=" N   HIS A 134 "
           model="   1" pdb=" CA  HIS A 134 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  144.42   35.58     0      5.00e+00 4.00e-02 5.06e+01
  dihedral model="   1" pdb=" CA  LEU A 119 "
           model="   1" pdb=" C   LEU A 119 "
           model="   1" pdb=" N   GLU A 120 "
           model="   1" pdb=" CA  GLU A 120 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  144.57   35.43     0      5.00e+00 4.00e-02 5.02e+01
  dihedral model="   1" pdb=" CA  LYS A 113 "
           model="   1" pdb=" C   LYS A 113 "
           model="   1" pdb=" N   PRO A 114 "
           model="   1" pdb=" CA  PRO A 114 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  150.04   29.96     0      5.00e+00 4.00e-02 3.59e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.000 -    0.158: 151
       0.158 -    0.315: 22
       0.315 -    0.473: 2
       0.473 -    0.630: 0
       0.630 -    0.787: 1
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CG  LEU A   2 "
            model="   1" pdb=" CB  LEU A   2 "
            model="   1" pdb=" CD1 LEU A   2 "
            model="   1" pdb=" CD2 LEU A   2 "
    both_signs  ideal   model   delta    sigma   weight residual
      False     -2.59   -1.80   -0.79 2.00e-01 2.50e+01 1.55e+01
  chirality model="   1" pdb=" CA  HIS A 139 "
            model="   1" pdb=" N   HIS A 139 "
            model="   1" pdb=" C   HIS A 139 "
            model="   1" pdb=" CB  HIS A 139 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.13    0.38 2.00e-01 2.50e+01 3.54e+00
  chirality model="   1" pdb=" CA  LYS A  63 "
            model="   1" pdb=" N   LYS A  63 "
            model="   1" pdb=" C   LYS A  63 "
            model="   1" pdb=" CB  LYS A  63 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.19    0.32 2.00e-01 2.50e+01 2.55e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  12 "   -0.030 2.00e-02 2.50e+03   5.60e-02 9.39e+01
        model="   1" pdb=" CG  TYR A  12 "    0.017 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  12 "   -0.014 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  12 "    0.038 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  12 "    0.013 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  12 "   -0.039 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  12 "    0.016 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  12 "    0.044 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  12 "   -0.052 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  12 "    0.104 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  12 "    0.029 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  12 "   -0.128 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  PHE A  45 "   -0.105 2.00e-02 2.50e+03   5.14e-02 7.92e+01
        model="   1" pdb=" CG  PHE A  45 "   -0.012 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 PHE A  45 "    0.023 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 PHE A  45 "    0.021 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 PHE A  45 "    0.013 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 PHE A  45 "    0.013 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  PHE A  45 "   -0.035 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 PHE A  45 "    0.052 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 PHE A  45 "    0.050 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 PHE A  45 "    0.038 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 PHE A  45 "    0.040 2.00e-02 2.50e+03
        model="   1" pdb=" HZ  PHE A  45 "   -0.099 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A 111 "   -0.024 2.00e-02 2.50e+03   4.66e-02 6.52e+01
        model="   1" pdb=" CG  TYR A 111 "    0.052 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A 111 "    0.018 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A 111 "    0.013 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A 111 "   -0.027 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A 111 "   -0.021 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A 111 "    0.012 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A 111 "    0.093 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A 111 "    0.026 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A 111 "    0.010 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A 111 "   -0.084 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A 111 "   -0.067 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.81 -     2.37: 668
        2.37 -     2.93: 50
  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 0.93
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 1.07 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

24
        2.93 -     3.48: 4938
        3.48 -     4.04: 6206
        4.04 -     4.60: 9367
  Nonbonded interactions: 26203
  Sorted by model distance:
  nonbonded model="   1" pdb=" OE2 GLU A   8 "
            model="   1" pdb="HH22 ARG A  58 "
     model   vdw
     1.810 1.850
  nonbonded model="   1" pdb=" HE1 HIS A 135 "
            model="   1" pdb=" HB2 HIS A 137 "
     model   vdw
     1.813 2.270
  nonbonded model="   1" pdb=" OE2 GLU A  16 "
            model="   1" pdb=" HZ1 LYS A  19 "
     model   vdw
     1.822 1.850
  nonbonded model="   1" pdb=" H   THR A   5 "
            model="   1" pdb=" OE1 GLU A   8 "
     model   vdw
     1.852 1.850
  nonbonded model="   1" pdb=" HA  ALA A  33 "
            model="   1" pdb="HD22 LEU A  64 "
     model   vdw
     1.891 2.440
  ... (remaining 26198 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 0.93
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 1.06 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.


  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 1.00
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 1.13 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.


  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 0.96
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 1.01 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 86
        1.23 -     1.43: 376
        1.43 -     1.62: 669
        1.62 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" CD  ARG A  21 "
       model="   1" pdb=" NE  ARG A  21 "
    ideal  model  delta    sigma   weight residual
    1.458  1.511 -0.053 1.40e-02 5.10e+03 1.41e+01
  bond model="   1" pdb=" CE1 HIS A 137 "
       model="   1" pdb=" NE2 HIS A 137 "
    ideal  model  delta    sigma   weight residual
    1.321  1.357 -0.036 1.00e-02 1.00e+04 1.28e+01
  bond model="   1" pdb=" CE1 HIS A 135 "
       model="   1" pdb=" NE2 HIS A 135 "
    ideal  model  delta    sigma   weight residual
    1.321  1.356 -0.035 1.00e-02 1.00e+04 1.22e+01
  bond model="   1" pdb=" CE1 HIS A 138 "
       model="   1" pdb=" NE2 HIS A 138 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.18e+01
  bond model="   1" pdb=" CE1 HIS A 136 "
       model="   1" pdb=" NE2 HIS A 136 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.18e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       94.17 -   101.68: 10
      101.68 -   109.20: 1081
      109.20 -   116.72: 1928
      116.72 -   124.24: 947
      124.24 -   131.76: 111
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" N   SER A  98 "
        model="   1" pdb=" CA  SER A  98 "
        model="   1" pdb=" CB  SER A  98 "
      ideal   model   delta    sigma   weight residual
     110.50  119.60   -9.10 1.70e+00 3.46e-01 2.87e+01
  angle model="   1" pdb=" CA  LYS A 101 "
        model="   1" pdb=" C   LYS A 101 "
        model="   1" pdb=" N   PRO A 102 "
      ideal   model   delta    sigma   weight residual
     116.90  124.60   -7.70 1.50e+00 4.44e-01 2.64e+01
  angle model="   1" pdb=" CA  LYS A 113 "
        model="   1" pdb=" C   LYS A 113 "
        model="   1" pdb=" N   PRO A 114 "
      ideal   model   delta    sigma   weight residual
     116.90  124.30   -7.40 1.50e+00 4.44e-01 2.43e+01
  angle model="   1" pdb=" C   HIS A 137 "
        model="   1" pdb=" CA  HIS A 137 "
        model="   1" pdb=" CB  HIS A 137 "
      ideal   model   delta    sigma   weight residual
     110.10  100.91    9.19 1.90e+00 2.77e-01 2.34e+01
  angle model="   1" pdb=" C   HIS A 135 "
        model="   1" pdb=" CA  HIS A 135 "
        model="   1" pdb=" CB  HIS A 135 "
      ideal   model   delta    sigma   weight residual
     110.10  101.03    9.07 1.90e+00 2.77e-01 2.28e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    15.48: 990
       15.48 -    30.95: 28
       30.95 -    46.43: 8
       46.43 -    61.90: 3
       61.90 -    77.38: 3
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" CA  HIS A 138 "
           model="   1" pdb=" C   HIS A 138 "
           model="   1" pdb=" N   HIS A 139 "
           model="   1" pdb=" CA  HIS A 139 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  131.32   48.68     0      5.00e+00 4.00e-02 9.48e+01
  dihedral model="   1" pdb=" CA  HIS A 137 "
           model="   1" pdb=" C   HIS A 137 "
           model="   1" pdb=" N   HIS A 138 "
           model="   1" pdb=" CA  HIS A 138 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  156.36   23.64     0      5.00e+00 4.00e-02 2.23e+01
  dihedral model="   1" pdb=" C   HIS A 137 "
           model="   1" pdb=" N   HIS A 137 "
           model="   1" pdb=" CA  HIS A 137 "
           model="   1" pdb=" CB  HIS A 137 "
      ideal   model   delta  harmonic     sigma   weight residual
    -122.60 -111.45  -11.15     0      2.50e+00 1.60e-01 1.99e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.000 -    0.074: 99
       0.074 -    0.147: 60
       0.147 -    0.221: 11
       0.221 -    0.294: 4
       0.294 -    0.367: 2
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  THR A   5 "
            model="   1" pdb=" N   THR A   5 "
            model="   1" pdb=" C   THR A   5 "
            model="   1" pdb=" CB  THR A   5 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.53    2.16    0.37 2.00e-01 2.50e+01 3.38e+00
  chirality model="   1" pdb=" CA  HIS A 139 "
            model="   1" pdb=" N   HIS A 139 "
            model="   1" pdb=" C   HIS A 139 "
            model="   1" pdb=" CB  HIS A 139 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.19    0.32 2.00e-01 2.50e+01 2.49e+00
  chirality model="   1" pdb=" CA  ILE A   4 "
            model="   1" pdb=" N   ILE A   4 "
            model="   1" pdb=" C   ILE A   4 "
            model="   1" pdb=" CB  ILE A   4 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.43    2.68   -0.24 2.00e-01 2.50e+01 1.48e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  89 "    0.099 2.00e-02 2.50e+03   4.44e-02 5.91e+01
        model="   1" pdb=" CG  TYR A  89 "   -0.004 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  89 "   -0.025 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  89 "   -0.015 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  89 "   -0.008 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  89 "   -0.018 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  89 "    0.023 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  89 "    0.082 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  89 "   -0.050 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  89 "   -0.021 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  89 "   -0.017 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  89 "   -0.046 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A 111 "    0.053 2.00e-02 2.50e+03   4.01e-02 4.82e+01
        model="   1" pdb=" CG  TYR A 111 "    0.013 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A 111 "    0.003 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A 111 "   -0.017 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A 111 "   -0.027 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A 111 "   -0.008 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A 111 "    0.012 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A 111 "    0.086 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A 111 "    0.016 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A 111 "   -0.042 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A 111 "   -0.073 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A 111 "   -0.016 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  PHE A  45 "    0.012 2.00e-02 2.50e+03   3.15e-02 2.97e+01
        model="   1" pdb=" CG  PHE A  45 "   -0.024 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 PHE A  45 "   -0.021 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 PHE A  45 "    0.009 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 PHE A  45 "    0.022 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 PHE A  45 "   -0.009 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  PHE A  45 "   -0.008 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 PHE A  45 "   -0.046 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 PHE A  45 "    0.044 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 PHE A  45 "    0.069 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 PHE A  45 "   -0.021 2.00e-02 2.50e+03
        model="   1" pdb=" HZ  PHE A  45 "   -0.027 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.67 -     2.26: 176
        2.26 -     2.84: 4676
        2.84 -     3.43: 5125
        3.43 -     4.01: 6254
        4.01 -     4.60: 9363
  Nonbonded interactions: 25594
  Sorted by model distance:
  nonbonded model="   1" pdb=" OE2 GLU A  16 "
            model="   1" pdb=" HZ2 LYS A  19 "
     model   vdw
     1.669 1.850
  nonbonded model="   1" pdb=" OE2 GLU A  55 "
            model="   1" pdb="HH21 ARG A  58 "
     model   vdw
     1.720 1.850
  nonbonded model="   1" pdb=" OE1 GLU A  55 "
            model="   1" pdb=" HE  ARG A  58 "
     model   vdw
     1.734 1.850
  nonbonded model="   1" pdb=" H   ILE A  78 "
            model="   1" pdb="HG23 ILE A  78 "
     model   vdw
     1.854 2.270
  nonbonded model="   1" pdb=" O   ILE A  30 "
            model="   1" pdb=" H   THR A  34 "
     model   vdw
     1.933 1.850
  ... (remaining 25589 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 0.98
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 1.10 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.


  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 0.87
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 0.99 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 116
        1.23 -     1.43: 354
        1.43 -     1.63: 661
        1.63 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" CD  ARG A 127 "
       model="   1" pdb=" NE  ARG A 127 "
    ideal  model  delta    sigma   weight residual
    1.458  1.508 -0.050 1.40e-02 5.10e+03 1.30e+01
  bond model="   1" pdb=" CE1 HIS A  43 "
       model="   1" pdb=" NE2 HIS A  43 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.13e+01
  bond model="   1" pdb=" CD  ARG A  21 "
       model="   1" pdb=" NE  ARG A  21 "
    ideal  model  delta    sigma   weight residual
    1.458  1.505 -0.047 1.40e-02 5.10e+03 1.12e+01
  bond model="   1" pdb=" CD  ARG A  58 "
       model="   1" pdb=" NE  ARG A  58 "
    ideal  model  delta    sigma   weight residual
    1.458  1.505 -0.047 1.40e-02 5.10e+03 1.11e+01
  bond model="   1" pdb=" C   PRO A 117 "
       model="   1" pdb=" N   ASP A 118 "
    ideal  model  delta    sigma   weight residual
    1.329  1.375 -0.046 1.40e-02 5.10e+03 1.06e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       96.75 -   103.62: 24
      103.62 -   110.48: 2216
      110.48 -   117.35: 845
      117.35 -   124.22: 879
      124.22 -   131.09: 113
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" CA  ILE A  51 "
        model="   1" pdb=" C   ILE A  51 "
        model="   1" pdb=" N   PRO A  52 "
      ideal   model   delta    sigma   weight residual
     116.90  126.33   -9.43 1.50e+00 4.44e-01 3.95e+01
  angle model="   1" pdb=" N   PRO A 117 "
        model="   1" pdb=" CA  PRO A 117 "
        model="   1" pdb=" CB  PRO A 117 "
      ideal   model   delta    sigma   weight residual
     103.00   96.75    6.25 1.10e+00 8.26e-01 3.23e+01
  angle model="   1" pdb=" C   ASP A 116 "
        model="   1" pdb=" CA  ASP A 116 "
        model="   1" pdb=" CB  ASP A 116 "
      ideal   model   delta    sigma   weight residual
     110.10  120.58  -10.48 1.90e+00 2.77e-01 3.04e+01
  angle model="   1" pdb=" CB  PRO A 117 "
        model="   1" pdb=" CA  PRO A 117 "
        model="   1" pdb=" HA  PRO A 117 "
      ideal   model   delta    sigma   weight residual
     109.00  124.84  -15.84 3.00e+00 1.11e-01 2.79e+01
  angle model="   1" pdb=" N   PRO A 117 "
        model="   1" pdb=" CA  PRO A 117 "
        model="   1" pdb=" C   PRO A 117 "
      ideal   model   delta    sigma   weight residual
     112.10  124.70  -12.60 2.50e+00 1.60e-01 2.54e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    13.86: 961
       13.86 -    27.72: 45
       27.72 -    41.57: 16
       41.57 -    55.43: 7
       55.43 -    69.29: 3
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" CA  ASP A 116 "
           model="   1" pdb=" C   ASP A 116 "
           model="   1" pdb=" N   PRO A 117 "
           model="   1" pdb=" CA  PRO A 117 "
      ideal   model   delta  harmonic     sigma   weight residual
    -180.00 -141.36  -38.64     0      5.00e+00 4.00e-02 5.97e+01
  dihedral model="   1" pdb=" N   ASP A 118 "
           model="   1" pdb=" C   ASP A 118 "
           model="   1" pdb=" CA  ASP A 118 "
           model="   1" pdb=" CB  ASP A 118 "
      ideal   model   delta  harmonic     sigma   weight residual
     122.80  135.09  -12.29     0      2.50e+00 1.60e-01 2.42e+01
  dihedral model="   1" pdb=" CA  GLN A 100 "
           model="   1" pdb=" C   GLN A 100 "
           model="   1" pdb=" N   LYS A 101 "
           model="   1" pdb=" CA  LYS A 101 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  155.43   24.57     0      5.00e+00 4.00e-02 2.42e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.000 -    0.085: 113
       0.085 -    0.169: 46
       0.169 -    0.253: 14
       0.253 -    0.338: 1
       0.338 -    0.422: 2
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  ASP A  74 "
            model="   1" pdb=" N   ASP A  74 "
            model="   1" pdb=" C   ASP A  74 "
            model="   1" pdb=" CB  ASP A  74 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.09    0.42 2.00e-01 2.50e+01 4.45e+00
  chirality model="   1" pdb=" CA  ASP A 118 "
            model="   1" pdb=" N   ASP A 118 "
            model="   1" pdb=" C   ASP A 118 "
            model="   1" pdb=" CB  ASP A 118 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.17    0.34 2.00e-01 2.50e+01 2.93e+00
  chirality model="   1" pdb=" CA  GLU A  84 "
            model="   1" pdb=" N   GLU A  84 "
            model="   1" pdb=" C   GLU A  84 "
            model="   1" pdb=" CB  GLU A  84 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.23    0.28 2.00e-01 2.50e+01 1.98e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  PHE A  45 "   -0.147 2.00e-02 2.50e+03   9.05e-02 2.46e+02
        model="   1" pdb=" CG  PHE A  45 "    0.008 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 PHE A  45 "    0.075 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 PHE A  45 "    0.002 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 PHE A  45 "   -0.045 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 PHE A  45 "    0.028 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  PHE A  45 "   -0.013 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 PHE A  45 "    0.202 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 PHE A  45 "   -0.019 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 PHE A  45 "   -0.146 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 PHE A  45 "    0.073 2.00e-02 2.50e+03
        model="   1" pdb=" HZ  PHE A  45 "   -0.019 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A 105 "    0.092 2.00e-02 2.50e+03   4.12e-02 5.10e+01
        model="   1" pdb=" CG  TYR A 105 "   -0.032 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A 105 "   -0.015 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A 105 "   -0.035 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A 105 "   -0.001 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A 105 "    0.019 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A 105 "    0.034 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A 105 "   -0.003 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A 105 "   -0.014 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A 105 "   -0.074 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A 105 "   -0.016 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A 105 "    0.045 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  12 "    0.012 2.00e-02 2.50e+03   3.80e-02 4.33e+01
        model="   1" pdb=" CG  TYR A  12 "    0.083 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  12 "    0.009 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  12 "    0.000 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  12 "   -0.015 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  12 "   -0.006 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  12 "    0.018 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  12 "    0.055 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  12 "   -0.024 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  12 "   -0.051 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  12 "   -0.053 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  12 "   -0.027 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.78 -     2.34: 477
        2.34 -     2.91: 5092
        2.91 -     3.47: 4926
        3.47 -     4.04: 6297
        4.04 -     4.60: 9674
  Nonbonded interactions: 26466
  Sorted by model distance:
  nonbonded model="   1" pdb="HG23 VAL A  41 "
            model="   1" pdb=" H   HIS A  43 "
     model   vdw
     1.779 2.270
  nonbonded model="   1" pdb=" OE1 GLU A  16 "
            model="   1" pdb=" HZ2 LYS A  19 "
     model   vdw
     1.827 1.850
  nonbonded model="   1" pdb=" HH  TYR A 105 "
            model="   1" pdb=" O   ILE A 122 "
     model   vdw
     1.833 1.850
  nonbonded model="   1" pdb=" OE2 GLU A  24 "
            model="   1" pdb=" HZ2 LYS A  27 "
     model   vdw
     1.847 1.850
  nonbonded model="   1" pdb=" HZ1 LYS A  10 "
            model="   1" pdb=" OD1 ASP A  23 "
     model   vdw
     1.865 1.850
  ... (remaining 26461 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.
  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 101
        1.23 -     1.43: 370
        1.43 -     1.63: 660
        1.63 -     1.83: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" CE1 HIS A 138 "
       model="   1" pdb=" NE2 HIS A 138 "
    ideal  model  delta    sigma   weight residual
    1.321  1.357 -0.036 1.00e-02 1.00e+04 1.27e+01
  bond model="   1" pdb=" CE1 HIS A 137 "
       model="   1" pdb=" NE2 HIS A 137 "
    ideal  model  delta    sigma   weight residual
    1.321  1.356 -0.035 1.00e-02 1.00e+04 1.25e+01
  bond model="   1" pdb=" CE1 HIS A  43 "
       model="   1" pdb=" NE2 HIS A  43 "
    ideal  model  delta    sigma   weight residual
    1.321  1.356 -0.035 1.00e-02 1.00e+04 1.24e+01
  bond model="   1" pdb=" CE1 HIS A 134 "
       model="   1" pdb=" NE2 HIS A 134 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.18e+01
  bond model="   1" pdb=" CE1 HIS A 136 "
       model="   1" pdb=" NE2 HIS A 136 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.16e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       97.85 -   104.80: 88
      104.80 -   111.75: 2410
      111.75 -   118.71: 696
      118.71 -   125.66: 834
      125.66 -   132.61: 49
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" CA  LYS A 113 "
        model="   1" pdb=" C   LYS A 113 "
        model="   1" pdb=" N   PRO A 114 "
      ideal   model   delta    sigma   weight residual
     116.90  127.02  -10.12 1.50e+00 4.44e-01 4.55e+01
  angle model="   1" pdb=" C   HIS A  43 "
        model="   1" pdb=" CA  HIS A  43 "
        model="   1" pdb=" CB  HIS A  43 "
      ideal   model   delta    sigma   weight residual
     110.10  100.68    9.42 1.90e+00 2.77e-01 2.46e+01
  angle model="   1" pdb=" ND1 HIS A  43 "
        model="   1" pdb=" CG  HIS A  43 "
        model="   1" pdb=" CD2 HIS A  43 "
      ideal   model   delta    sigma   weight residual
     106.10  110.99   -4.89 1.00e+00 1.00e+00 2.39e+01
  angle model="   1" pdb=" ND1 HIS A 138 "
        model="   1" pdb=" CG  HIS A 138 "
        model="   1" pdb=" CD2 HIS A 138 "
      ideal   model   delta    sigma   weight residual
     106.10  110.81   -4.71 1.00e+00 1.00e+00 2.22e+01
  angle model="   1" pdb=" ND1 HIS A 135 "
        model="   1" pdb=" CG  HIS A 135 "
        model="   1" pdb=" CD2 HIS A 135 "
      ideal   model   delta    sigma   weight residual
     106.10  110.76   -4.66 1.00e+00 1.00e+00 2.18e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    17.44: 978
       17.44 -    34.88: 41
       34.88 -    52.32: 7
       52.32 -    69.76: 4
       69.76 -    87.20: 2
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" CA  HIS A 138 "
           model="   1" pdb=" C   HIS A 138 "
           model="   1" pdb=" N   HIS A 139 "
           model="   1" pdb=" CA  HIS A 139 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00   92.80   87.20     0      5.00e+00 4.00e-02 3.04e+02
  dihedral model="   1" pdb=" CA  HIS A 137 "
           model="   1" pdb=" C   HIS A 137 "
           model="   1" pdb=" N   HIS A 138 "
           model="   1" pdb=" CA  HIS A 138 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  126.60   53.40     0      5.00e+00 4.00e-02 1.14e+02
  dihedral model="   1" pdb=" C   ASP A  74 "
           model="   1" pdb=" N   ASP A  74 "
           model="   1" pdb=" CA  ASP A  74 "
           model="   1" pdb=" CB  ASP A  74 "
      ideal   model   delta  harmonic     sigma   weight residual
    -122.60 -133.48   10.88     0      2.50e+00 1.60e-01 1.89e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.001 -    0.085: 111
       0.085 -    0.170: 46
       0.170 -    0.254: 12
       0.254 -    0.339: 6
       0.339 -    0.423: 1
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  ASP A  74 "
            model="   1" pdb=" N   ASP A  74 "
            model="   1" pdb=" C   ASP A  74 "
            model="   1" pdb=" CB  ASP A  74 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.09    0.42 2.00e-01 2.50e+01 4.48e+00
  chirality model="   1" pdb=" CA  PHE A  67 "
            model="   1" pdb=" N   PHE A  67 "
            model="   1" pdb=" C   PHE A  67 "
            model="   1" pdb=" CB  PHE A  67 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.17    0.34 2.00e-01 2.50e+01 2.86e+00
  chirality model="   1" pdb=" CA  ASP A  88 "
            model="   1" pdb=" N   ASP A  88 "
            model="   1" pdb=" C   ASP A  88 "
            model="   1" pdb=" CB  ASP A  88 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.19    0.32 2.00e-01 2.50e+01 2.55e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  91 "    0.126 2.00e-02 2.50e+03   1.37e-01 5.62e+02
        model="   1" pdb=" CG  TYR A  91 "   -0.067 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  91 "   -0.106 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  91 "    0.019 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  91 "    0.098 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  91 "   -0.028 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  91 "    0.028 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  91 "   -0.094 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  91 "   -0.269 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  91 "    0.107 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  91 "    0.282 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  91 "   -0.096 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  PHE A  15 "    0.016 2.00e-02 2.50e+03   5.88e-02 1.04e+02
        model="   1" pdb=" CG  PHE A  15 "    0.017 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 PHE A  15 "   -0.034 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 PHE A  15 "    0.029 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 PHE A  15 "    0.028 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 PHE A  15 "   -0.035 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  PHE A  15 "    0.008 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 PHE A  15 "   -0.109 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 PHE A  15 "    0.080 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 PHE A  15 "    0.084 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 PHE A  15 "   -0.105 2.00e-02 2.50e+03
        model="   1" pdb=" HZ  PHE A  15 "    0.022 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A 105 "    0.020 2.00e-02 2.50e+03   5.21e-02 8.15e+01
        model="   1" pdb=" CG  TYR A 105 "   -0.028 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A 105 "    0.022 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A 105 "   -0.031 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A 105 "   -0.034 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A 105 "    0.021 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A 105 "    0.004 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A 105 "    0.030 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A 105 "    0.095 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A 105 "   -0.068 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A 105 "   -0.097 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A 105 "    0.066 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.65 -     2.24: 186
        2.24 -     2.83: 4617
        2.83 -     3.42: 5514
        3.42 -     4.01: 6578
        4.01 -     4.60: 9968
  Nonbonded interactions: 26863
  Sorted by model distance:
  nonbonded model="   1" pdb="HG22 VAL A  18 "
            model="   1" pdb="HH12 ARG A  21 "
     model   vdw
     1.645 2.270
  nonbonded model="   1" pdb=" OD2 ASP A  36 "
            model="   1" pdb=" HH  TYR A  68 "
     model   vdw
     1.728 1.850
  nonbonded model="   1" pdb=" OE1 GLU A  16 "
            model="   1" pdb=" H   GLU A  16 "
     model   vdw
     1.790 1.850
  nonbonded model="   1" pdb="HE21 GLN A  28 "
            model="   1" pdb=" OE2 GLU A  32 "
     model   vdw
     1.811 1.850
  nonbonded model="   1" pdb="HD13 LEU A  70 "
            model="   1" pdb=" HB2 LYS A  79 "
     model   vdw
     1.819 2.440
  ... (remaining 26858 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.
  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 133
        1.23 -     1.43: 340
        1.43 -     1.63: 658
        1.63 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" CA  GLY A  96 "
       model="   1" pdb=" C   GLY A  96 "
    ideal  model  delta    sigma   weight residual
    1.516  1.444  0.072 1.80e-02 3.09e+03 1.60e+01
  bond model="   1" pdb=" CE1 HIS A  43 "
       model="   1" pdb=" NE2 HIS A  43 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.18e+01
  bond model="   1" pdb=" CE1 HIS A 134 "
       model="   1" pdb=" NE2 HIS A 134 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.14e+01
  bond model="   1" pdb=" CE1 HIS A 136 "
       model="   1" pdb=" NE2 HIS A 136 "
    ideal  model  delta    sigma   weight residual
    1.321  1.354 -0.033 1.00e-02 1.00e+04 1.10e+01
  bond model="   1" pdb=" CD  ARG A  58 "
       model="   1" pdb=" NE  ARG A  58 "
    ideal  model  delta    sigma   weight residual
    1.458  1.504 -0.046 1.40e-02 5.10e+03 1.10e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       95.91 -   102.95: 19
      102.95 -   109.99: 2098
      109.99 -   117.03: 946
      117.03 -   124.07: 881
      124.07 -   131.11: 133
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" CA  LYS A 113 "
        model="   1" pdb=" C   LYS A 113 "
        model="   1" pdb=" N   PRO A 114 "
      ideal   model   delta    sigma   weight residual
     116.90  124.86   -7.96 1.50e+00 4.44e-01 2.81e+01
  angle model="   1" pdb=" CA  ASP A  95 "
        model="   1" pdb=" CB  ASP A  95 "
        model="   1" pdb=" CG  ASP A  95 "
      ideal   model   delta    sigma   weight residual
     112.60  117.87   -5.27 1.00e+00 1.00e+00 2.78e+01
  angle model="   1" pdb=" CA  ASP A 116 "
        model="   1" pdb=" C   ASP A 116 "
        model="   1" pdb=" N   PRO A 117 "
      ideal   model   delta    sigma   weight residual
     116.90  124.60   -7.70 1.50e+00 4.44e-01 2.63e+01
  angle model="   1" pdb=" CA  LEU A  53 "
        model="   1" pdb=" C   LEU A  53 "
        model="   1" pdb=" N   PRO A  54 "
      ideal   model   delta    sigma   weight residual
     116.90  124.54   -7.64 1.50e+00 4.44e-01 2.59e+01
  angle model="   1" pdb=" N   SER A  97 "
        model="   1" pdb=" CA  SER A  97 "
        model="   1" pdb=" HA  SER A  97 "
      ideal   model   delta    sigma   weight residual
     110.00   95.91   14.09 3.00e+00 1.11e-01 2.21e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    14.84: 972
       14.84 -    29.69: 42
       29.69 -    44.53: 13
       44.53 -    59.37: 2
       59.37 -    74.22: 3
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" CA  HIS A 136 "
           model="   1" pdb=" C   HIS A 136 "
           model="   1" pdb=" N   HIS A 137 "
           model="   1" pdb=" CA  HIS A 137 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  116.16   63.84     0      5.00e+00 4.00e-02 1.63e+02
  dihedral model="   1" pdb=" CA  HIS A 135 "
           model="   1" pdb=" C   HIS A 135 "
           model="   1" pdb=" N   HIS A 136 "
           model="   1" pdb=" CA  HIS A 136 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  149.44   30.56     0      5.00e+00 4.00e-02 3.74e+01
  dihedral model="   1" pdb=" CA  ILE A 122 "
           model="   1" pdb=" C   ILE A 122 "
           model="   1" pdb=" N   GLU A 123 "
           model="   1" pdb=" CA  GLU A 123 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  151.12   28.88     0      5.00e+00 4.00e-02 3.34e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.000 -    0.113: 138
       0.113 -    0.226: 32
       0.226 -    0.339: 4
       0.339 -    0.451: 1
       0.451 -    0.564: 1
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  SER A  97 "
            model="   1" pdb=" N   SER A  97 "
            model="   1" pdb=" C   SER A  97 "
            model="   1" pdb=" CB  SER A  97 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    1.95    0.56 2.00e-01 2.50e+01 7.96e+00
  chirality model="   1" pdb=" CA  HIS A 136 "
            model="   1" pdb=" N   HIS A 136 "
            model="   1" pdb=" C   HIS A 136 "
            model="   1" pdb=" CB  HIS A 136 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.13    0.38 2.00e-01 2.50e+01 3.60e+00
  chirality model="   1" pdb=" CB  ILE A  78 "
            model="   1" pdb=" CA  ILE A  78 "
            model="   1" pdb=" CG1 ILE A  78 "
            model="   1" pdb=" CG2 ILE A  78 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.64    2.37    0.28 2.00e-01 2.50e+01 1.95e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  68 "   -0.213 2.00e-02 2.50e+03   1.20e-01 4.35e+02
        model="   1" pdb=" CG  TYR A  68 "    0.002 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  68 "    0.099 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  68 "    0.008 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  68 "   -0.059 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  68 "    0.031 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  68 "   -0.068 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  68 "   -0.023 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  68 "    0.270 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  68 "   -0.003 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  68 "   -0.155 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  68 "    0.111 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  91 "   -0.035 2.00e-02 2.50e+03   3.57e-02 3.82e+01
        model="   1" pdb=" CG  TYR A  91 "   -0.001 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  91 "    0.026 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  91 "   -0.009 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  91 "   -0.018 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  91 "    0.018 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  91 "   -0.006 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  91 "   -0.013 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  91 "    0.074 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  91 "   -0.033 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  91 "   -0.055 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  91 "    0.053 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A 111 "    0.028 2.00e-02 2.50e+03   3.04e-02 2.77e+01
        model="   1" pdb=" CG  TYR A 111 "    0.021 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A 111 "   -0.002 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A 111 "   -0.000 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A 111 "   -0.015 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A 111 "   -0.017 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A 111 "    0.012 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A 111 "    0.073 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A 111 "   -0.009 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A 111 "   -0.003 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A 111 "   -0.041 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A 111 "   -0.047 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.55 -     2.16: 89
        2.16 -     2.77: 4167
        2.77 -     3.38: 5725
        3.38 -     3.99: 6912
        3.99 -     4.60: 10588
  Nonbonded interactions: 27481
  Sorted by model distance:
  nonbonded model="   1" pdb=" H   ILE A  77 "
            model="   1" pdb="HG13 ILE A  77 "
     model   vdw
     1.551 2.270
  nonbonded model="   1" pdb=" HZ1 LYS A  10 "
            model="   1" pdb=" OD1 ASP A  23 "
     model   vdw
     1.742 1.850
  nonbonded model="   1" pdb="HE21 GLN A 100 "
            model="   1" pdb="HG12 VAL A 104 "
     model   vdw
     1.805 2.270
  nonbonded model="   1" pdb="HG23 VAL A  41 "
            model="   1" pdb=" H   HIS A  43 "
     model   vdw
     1.862 2.270
  nonbonded model="   1" pdb=" HZ3 LYS A  40 "
            model="   1" pdb=" OD1 ASP A 118 "
     model   vdw
     1.893 1.850
  ... (remaining 27476 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.
  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 114
        1.23 -     1.43: 355
        1.43 -     1.63: 662
        1.63 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" CE1 HIS A 134 "
       model="   1" pdb=" NE2 HIS A 134 "
    ideal  model  delta    sigma   weight residual
    1.321  1.361 -0.040 1.00e-02 1.00e+04 1.63e+01
  bond model="   1" pdb=" CE1 HIS A 135 "
       model="   1" pdb=" NE2 HIS A 135 "
    ideal  model  delta    sigma   weight residual
    1.321  1.361 -0.040 1.00e-02 1.00e+04 1.59e+01
  bond model="   1" pdb=" CE1 HIS A 139 "
       model="   1" pdb=" NE2 HIS A 139 "
    ideal  model  delta    sigma   weight residual
    1.321  1.361 -0.040 1.00e-02 1.00e+04 1.59e+01
  bond model="   1" pdb=" CE1 HIS A 138 "
       model="   1" pdb=" NE2 HIS A 138 "
    ideal  model  delta    sigma   weight residual
    1.321  1.360 -0.039 1.00e-02 1.00e+04 1.56e+01
  bond model="   1" pdb=" CE1 HIS A  43 "
       model="   1" pdb=" NE2 HIS A  43 "
    ideal  model  delta    sigma   weight residual
    1.321  1.360 -0.039 1.00e-02 1.00e+04 1.50e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       96.27 -   104.27: 38
      104.27 -   112.28: 2566
      112.28 -   120.29: 860
      120.29 -   128.29: 603
      128.29 -   136.30: 10
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" C   HIS A 137 "
        model="   1" pdb=" N   HIS A 138 "
        model="   1" pdb=" CA  HIS A 138 "
      ideal   model   delta    sigma   weight residual
     121.70  136.30  -14.60 1.80e+00 3.09e-01 6.58e+01
  angle model="   1" pdb=" C   HIS A 135 "
        model="   1" pdb=" N   HIS A 136 "
        model="   1" pdb=" CA  HIS A 136 "
      ideal   model   delta    sigma   weight residual
     121.70  135.27  -13.57 1.80e+00 3.09e-01 5.68e+01
  angle model="   1" pdb=" O   HIS A 135 "
        model="   1" pdb=" C   HIS A 135 "
        model="   1" pdb=" N   HIS A 136 "
      ideal   model   delta    sigma   weight residual
     123.00  112.71   10.29 1.60e+00 3.91e-01 4.14e+01
  angle model="   1" pdb=" N   HIS A 137 "
        model="   1" pdb=" CA  HIS A 137 "
        model="   1" pdb=" CB  HIS A 137 "
      ideal   model   delta    sigma   weight residual
     110.50  120.32   -9.82 1.70e+00 3.46e-01 3.34e+01
  angle model="   1" pdb=" CA  HIS A 135 "
        model="   1" pdb=" C   HIS A 135 "
        model="   1" pdb=" N   HIS A 136 "
      ideal   model   delta    sigma   weight residual
     116.20  127.16  -10.96 2.00e+00 2.50e-01 3.00e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    14.82: 969
       14.82 -    29.63: 45
       29.63 -    44.45: 14
       44.45 -    59.27: 3
       59.27 -    74.09: 1
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" N   HIS A 137 "
           model="   1" pdb=" C   HIS A 137 "
           model="   1" pdb=" CA  HIS A 137 "
           model="   1" pdb=" CB  HIS A 137 "
      ideal   model   delta  harmonic     sigma   weight residual
     122.80  142.40  -19.60     0      2.50e+00 1.60e-01 6.14e+01
  dihedral model="   1" pdb=" CA  HIS A 138 "
           model="   1" pdb=" C   HIS A 138 "
           model="   1" pdb=" N   HIS A 139 "
           model="   1" pdb=" CA  HIS A 139 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  144.07   35.93     0      5.00e+00 4.00e-02 5.16e+01
  dihedral model="   1" pdb=" C   HIS A 137 "
           model="   1" pdb=" N   HIS A 137 "
           model="   1" pdb=" CA  HIS A 137 "
           model="   1" pdb=" CB  HIS A 137 "
      ideal   model   delta  harmonic     sigma   weight residual
    -122.60 -139.60   17.00     0      2.50e+00 1.60e-01 4.62e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.001 -    0.142: 159
       0.142 -    0.283: 15
       0.283 -    0.424: 1
       0.424 -    0.566: 0
       0.566 -    0.707: 1
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  HIS A 137 "
            model="   1" pdb=" N   HIS A 137 "
            model="   1" pdb=" C   HIS A 137 "
            model="   1" pdb=" CB  HIS A 137 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    1.80    0.71 2.00e-01 2.50e+01 1.25e+01
  chirality model="   1" pdb=" CA  THR A  20 "
            model="   1" pdb=" N   THR A  20 "
            model="   1" pdb=" C   THR A  20 "
            model="   1" pdb=" CB  THR A  20 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.53    2.22    0.31 2.00e-01 2.50e+01 2.42e+00
  chirality model="   1" pdb=" CA  LEU A   3 "
            model="   1" pdb=" N   LEU A   3 "
            model="   1" pdb=" C   LEU A   3 "
            model="   1" pdb=" CB  LEU A   3 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.79   -0.28 2.00e-01 2.50e+01 1.96e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  HIS A 136 "    0.152 2.00e-02 2.50e+03   8.91e-02 1.59e+02
        model="   1" pdb=" CG  HIS A 136 "   -0.135 2.00e-02 2.50e+03
        model="   1" pdb=" ND1 HIS A 136 "   -0.112 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 HIS A 136 "   -0.028 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 HIS A 136 "    0.015 2.00e-02 2.50e+03
        model="   1" pdb=" NE2 HIS A 136 "    0.067 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 HIS A 136 "   -0.021 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 HIS A 136 "    0.063 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  89 "   -0.111 2.00e-02 2.50e+03   5.37e-02 8.65e+01
        model="   1" pdb=" CG  TYR A  89 "   -0.022 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  89 "    0.034 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  89 "    0.011 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  89 "   -0.002 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  89 "    0.020 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  89 "   -0.028 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  89 "   -0.075 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  89 "    0.098 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  89 "    0.026 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  89 "   -0.009 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  89 "    0.058 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  HIS A 138 "   -0.108 2.00e-02 2.50e+03   6.35e-02 8.06e+01
        model="   1" pdb=" CG  HIS A 138 "    0.098 2.00e-02 2.50e+03
        model="   1" pdb=" ND1 HIS A 138 "    0.079 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 HIS A 138 "    0.020 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 HIS A 138 "   -0.010 2.00e-02 2.50e+03
        model="   1" pdb=" NE2 HIS A 138 "   -0.048 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 HIS A 138 "    0.013 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 HIS A 138 "   -0.044 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.71 -     2.29: 280
        2.29 -     2.87: 4991
        2.87 -     3.44: 4914
        3.44 -     4.02: 6245
        4.02 -     4.60: 9561
  Nonbonded interactions: 25991
  Sorted by model distance:
  nonbonded model="   1" pdb=" OE2 GLU A  55 "
            model="   1" pdb="HH21 ARG A  58 "
     model   vdw
     1.709 1.850
  nonbonded model="   1" pdb=" HZ1 LYS A  10 "
            model="   1" pdb=" OD1 ASP A  23 "
     model   vdw
     1.725 1.850
  nonbonded model="   1" pdb="HG23 VAL A  41 "
            model="   1" pdb=" H   HIS A  43 "
     model   vdw
     1.762 2.270
  nonbonded model="   1" pdb=" OE1 GLU A  55 "
            model="   1" pdb=" HE  ARG A  58 "
     model   vdw
     1.768 1.850
  nonbonded model="   1" pdb=" H   ALA A 115 "
            model="   1" pdb=" H   ASP A 116 "
     model   vdw
     1.847 2.100
  ... (remaining 25986 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 0.88
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 1.00 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.


  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 0.97
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 1.10 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 93
        1.23 -     1.43: 373
        1.43 -     1.63: 665
        1.63 -     1.83: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" CD  ARG A  21 "
       model="   1" pdb=" NE  ARG A  21 "
    ideal  model  delta    sigma   weight residual
    1.458  1.508 -0.050 1.40e-02 5.10e+03 1.29e+01
  bond model="   1" pdb=" CE1 HIS A 135 "
       model="   1" pdb=" NE2 HIS A 135 "
    ideal  model  delta    sigma   weight residual
    1.321  1.356 -0.035 1.00e-02 1.00e+04 1.21e+01
  bond model="   1" pdb=" CE1 HIS A 139 "
       model="   1" pdb=" NE2 HIS A 139 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.19e+01
  bond model="   1" pdb=" CE1 HIS A  43 "
       model="   1" pdb=" NE2 HIS A  43 "
    ideal  model  delta    sigma   weight residual
    1.321  1.354 -0.033 1.00e-02 1.00e+04 1.12e+01
  bond model="   1" pdb=" CE1 HIS A 138 "
       model="   1" pdb=" NE2 HIS A 138 "
    ideal  model  delta    sigma   weight residual
    1.321  1.354 -0.033 1.00e-02 1.00e+04 1.12e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       97.23 -   104.41: 50
      104.41 -   111.59: 2431
      111.59 -   118.76: 707
      118.76 -   125.94: 858
      125.94 -   133.12: 31
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" CA  LYS A 101 "
        model="   1" pdb=" C   LYS A 101 "
        model="   1" pdb=" N   PRO A 102 "
      ideal   model   delta    sigma   weight residual
     116.90  124.95   -8.05 1.50e+00 4.44e-01 2.88e+01
  angle model="   1" pdb=" ND1 HIS A 134 "
        model="   1" pdb=" CG  HIS A 134 "
        model="   1" pdb=" CD2 HIS A 134 "
      ideal   model   delta    sigma   weight residual
     106.10  111.06   -4.96 1.00e+00 1.00e+00 2.46e+01
  angle model="   1" pdb=" N   ALA A 115 "
        model="   1" pdb=" CA  ALA A 115 "
        model="   1" pdb=" CB  ALA A 115 "
      ideal   model   delta    sigma   weight residual
     110.40  102.96    7.44 1.50e+00 4.44e-01 2.46e+01
  angle model="   1" pdb=" CA  LYS A 113 "
        model="   1" pdb=" C   LYS A 113 "
        model="   1" pdb=" N   PRO A 114 "
      ideal   model   delta    sigma   weight residual
     116.90  123.90   -7.00 1.50e+00 4.44e-01 2.18e+01
  angle model="   1" pdb=" C   SER A  98 "
        model="   1" pdb=" CA  SER A  98 "
        model="   1" pdb=" CB  SER A  98 "
      ideal   model   delta    sigma   weight residual
     110.10  101.56    8.54 1.90e+00 2.77e-01 2.02e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    11.80: 910
       11.80 -    23.59: 84
       23.59 -    35.39: 21
       35.39 -    47.18: 9
       47.18 -    58.98: 8
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" CA  LEU A  53 "
           model="   1" pdb=" C   LEU A  53 "
           model="   1" pdb=" N   PRO A  54 "
           model="   1" pdb=" CA  PRO A  54 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  156.19   23.81     0      5.00e+00 4.00e-02 2.27e+01
  dihedral model="   1" pdb=" N   VAL A  14 "
           model="   1" pdb=" C   VAL A  14 "
           model="   1" pdb=" CA  VAL A  14 "
           model="   1" pdb=" CB  VAL A  14 "
      ideal   model   delta  harmonic     sigma   weight residual
     123.40  133.69  -10.29     0      2.50e+00 1.60e-01 1.70e+01
  dihedral model="   1" pdb=" CA  ALA A  48 "
           model="   1" pdb=" C   ALA A  48 "
           model="   1" pdb=" N   GLU A  49 "
           model="   1" pdb=" CA  GLU A  49 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  160.48   19.52     0      5.00e+00 4.00e-02 1.52e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.000 -    0.060: 82
       0.060 -    0.119: 51
       0.119 -    0.179: 26
       0.179 -    0.239: 13
       0.239 -    0.298: 4
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  LYS A 101 "
            model="   1" pdb=" N   LYS A 101 "
            model="   1" pdb=" C   LYS A 101 "
            model="   1" pdb=" CB  LYS A 101 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.21    0.30 2.00e-01 2.50e+01 2.22e+00
  chirality model="   1" pdb=" CA  VAL A  14 "
            model="   1" pdb=" N   VAL A  14 "
            model="   1" pdb=" C   VAL A  14 "
            model="   1" pdb=" CB  VAL A  14 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.44    2.15    0.29 2.00e-01 2.50e+01 2.05e+00
  chirality model="   1" pdb=" CG  LEU A   3 "
            model="   1" pdb=" CB  LEU A   3 "
            model="   1" pdb=" CD1 LEU A   3 "
            model="   1" pdb=" CD2 LEU A   3 "
    both_signs  ideal   model   delta    sigma   weight residual
      False     -2.59   -2.86    0.27 2.00e-01 2.50e+01 1.88e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  91 "    0.103 2.00e-02 2.50e+03   1.04e-01 3.23e+02
        model="   1" pdb=" CG  TYR A  91 "    0.014 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  91 "   -0.063 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  91 "    0.030 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  91 "    0.022 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  91 "   -0.072 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  91 "    0.027 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  91 "    0.133 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  91 "   -0.172 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  91 "    0.109 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  91 "    0.075 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  91 "   -0.206 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A 111 "   -0.161 2.00e-02 2.50e+03   6.79e-02 1.38e+02
        model="   1" pdb=" CG  TYR A 111 "   -0.001 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A 111 "    0.032 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A 111 "    0.034 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A 111 "    0.018 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A 111 "    0.017 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A 111 "   -0.025 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A 111 "   -0.120 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A 111 "    0.065 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A 111 "    0.069 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A 111 "    0.037 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A 111 "    0.035 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  50 "   -0.038 2.00e-02 2.50e+03   3.50e-02 3.68e+01
        model="   1" pdb=" CG  TYR A  50 "    0.005 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  50 "    0.019 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  50 "   -0.007 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  50 "    0.001 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  50 "    0.027 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  50 "   -0.003 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  50 "   -0.064 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  50 "    0.039 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  50 "   -0.038 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  50 "   -0.009 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  50 "    0.070 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.71 -     2.28: 304
        2.28 -     2.86: 5069
        2.86 -     3.44: 5431
        3.44 -     4.02: 6948
        4.02 -     4.60: 10628
  Nonbonded interactions: 28380
  Sorted by model distance:
  nonbonded model="   1" pdb=" OD2 ASP A  36 "
            model="   1" pdb=" HH  TYR A  68 "
     model   vdw
     1.706 1.850
  nonbonded model="   1" pdb=" HB2 GLU A 123 "
            model="   1" pdb="HD11 LEU A 132 "
     model   vdw
     1.717 2.440
  nonbonded model="   1" pdb=" OD1 ASP A  88 "
            model="   1" pdb=" HZ2 LYS A 101 "
     model   vdw
     1.726 1.850
  nonbonded model="   1" pdb=" OD1 ASP A   7 "
            model="   1" pdb=" HZ2 LYS A  10 "
     model   vdw
     1.752 1.850
  nonbonded model="   1" pdb="HG12 VAL A 126 "
            model="   1" pdb=" H   MET A 128 "
     model   vdw
     1.790 2.270
  ... (remaining 28375 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.
  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 123
        1.23 -     1.43: 349
        1.43 -     1.63: 659
        1.63 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" C   PRO A 117 "
       model="   1" pdb=" N   ASP A 118 "
    ideal  model  delta    sigma   weight residual
    1.329  1.383 -0.054 1.40e-02 5.10e+03 1.51e+01
  bond model="   1" pdb=" CE1 HIS A 139 "
       model="   1" pdb=" NE2 HIS A 139 "
    ideal  model  delta    sigma   weight residual
    1.321  1.356 -0.035 1.00e-02 1.00e+04 1.26e+01
  bond model="   1" pdb=" CE1 HIS A 135 "
       model="   1" pdb=" NE2 HIS A 135 "
    ideal  model  delta    sigma   weight residual
    1.321  1.356 -0.035 1.00e-02 1.00e+04 1.22e+01
  bond model="   1" pdb=" C   ASP A 118 "
       model="   1" pdb=" N   LEU A 119 "
    ideal  model  delta    sigma   weight residual
    1.329  1.378 -0.049 1.40e-02 5.10e+03 1.22e+01
  bond model="   1" pdb=" N   ASP A 118 "
       model="   1" pdb=" CA  ASP A 118 "
    ideal  model  delta    sigma   weight residual
    1.458  1.523 -0.065 1.90e-02 2.77e+03 1.18e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       92.00 -   100.75: 18
      100.75 -   109.50: 1700
      109.50 -   118.25: 1394
      118.25 -   126.99: 934
      126.99 -   135.74: 31
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" CA  PRO A 117 "
        model="   1" pdb=" C   PRO A 117 "
        model="   1" pdb=" N   ASP A 118 "
      ideal   model   delta    sigma   weight residual
     116.20  135.74  -19.54 2.00e+00 2.50e-01 9.54e+01
  angle model="   1" pdb=" N   PRO A 117 "
        model="   1" pdb=" CA  PRO A 117 "
        model="   1" pdb=" C   PRO A 117 "
      ideal   model   delta    sigma   weight residual
     112.10  134.85  -22.75 2.50e+00 1.60e-01 8.28e+01
  angle model="   1" pdb=" CB  PRO A 117 "
        model="   1" pdb=" CA  PRO A 117 "
        model="   1" pdb=" HA  PRO A 117 "
      ideal   model   delta    sigma   weight residual
     109.00  132.15  -23.15 3.00e+00 1.11e-01 5.96e+01
  angle model="   1" pdb=" N   SER A 130 "
        model="   1" pdb=" CA  SER A 130 "
        model="   1" pdb=" CB  SER A 130 "
      ideal   model   delta    sigma   weight residual
     110.50  123.17  -12.67 1.70e+00 3.46e-01 5.56e+01
  angle model="   1" pdb=" CA  HIS A 135 "
        model="   1" pdb=" CB  HIS A 135 "
        model="   1" pdb=" CG  HIS A 135 "
      ideal   model   delta    sigma   weight residual
     113.80  121.05   -7.25 1.00e+00 1.00e+00 5.26e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    14.65: 952
       14.65 -    29.29: 50
       29.29 -    43.94: 16
       43.94 -    58.58: 8
       58.58 -    73.23: 6
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" CA  ASP A 116 "
           model="   1" pdb=" C   ASP A 116 "
           model="   1" pdb=" N   PRO A 117 "
           model="   1" pdb=" CA  PRO A 117 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00 -106.77  -73.23     0      5.00e+00 4.00e-02 2.15e+02
  dihedral model="   1" pdb=" CA  LEU A 132 "
           model="   1" pdb=" C   LEU A 132 "
           model="   1" pdb=" N   GLU A 133 "
           model="   1" pdb=" CA  GLU A 133 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  113.57   66.43     0      5.00e+00 4.00e-02 1.77e+02
  dihedral model="   1" pdb=" CA  HIS A 136 "
           model="   1" pdb=" C   HIS A 136 "
           model="   1" pdb=" N   HIS A 137 "
           model="   1" pdb=" CA  HIS A 137 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  118.99   61.01     0      5.00e+00 4.00e-02 1.49e+02
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.000 -    0.124: 137
       0.124 -    0.248: 25
       0.248 -    0.371: 7
       0.371 -    0.495: 6
     
  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 1.11
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 1.25 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  0.495 -    0.619: 1
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  PRO A 117 "
            model="   1" pdb=" N   PRO A 117 "
            model="   1" pdb=" C   PRO A 117 "
            model="   1" pdb=" CB  PRO A 117 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.72    2.10    0.62 2.00e-01 2.50e+01 9.57e+00
  chirality model="   1" pdb=" CA  HIS A 136 "
            model="   1" pdb=" N   HIS A 136 "
            model="   1" pdb=" C   HIS A 136 "
            model="   1" pdb=" CB  HIS A 136 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.05    0.46 2.00e-01 2.50e+01 5.23e+00
  chirality model="   1" pdb=" CA  GLU A 133 "
            model="   1" pdb=" N   GLU A 133 "
            model="   1" pdb=" C   GLU A 133 "
            model="   1" pdb=" CB  GLU A 133 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.07    0.44 2.00e-01 2.50e+01 4.79e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A 105 "   -0.200 2.00e-02 2.50e+03   8.24e-02 2.04e+02
        model="   1" pdb=" CG  TYR A 105 "    0.017 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A 105 "    0.040 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A 105 "    0.044 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A 105 "    0.026 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A 105 "    0.021 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A 105 "   -0.020 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A 105 "   -0.151 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A 105 "    0.066 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A 105 "    0.079 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A 105 "    0.046 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A 105 "    0.032 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  50 "   -0.147 2.00e-02 2.50e+03   6.57e-02 1.30e+02
        model="   1" pdb=" CG  TYR A  50 "   -0.020 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  50 "    0.025 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  50 "    0.034 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  50 "    0.017 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  50 "    0.010 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  50 "   -0.043 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  50 "   -0.105 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  50 "    0.060 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  50 "    0.088 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  50 "    0.053 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  50 "    0.028 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  HIS A 135 "   -0.125 2.00e-02 2.50e+03   7.46e-02 1.11e+02
        model="   1" pdb=" CG  HIS A 135 "    0.111 2.00e-02 2.50e+03
        model="   1" pdb=" ND1 HIS A 135 "    0.097 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 HIS A 135 "    0.022 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 HIS A 135 "   -0.012 2.00e-02 2.50e+03
        model="   1" pdb=" NE2 HIS A 135 "   -0.062 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 HIS A 135 "    0.018 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 HIS A 135 "   -0.049 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.72 -     2.29: 325
        2.29 -     2.87: 4911
        2.87 -     3.45: 5085
        3.45 -     4.02: 6563
        4.02 -     4.60: 9798
  Nonbonded interactions: 26682
  Sorted by model distance:
  nonbonded model="   1" pdb=" H   ASP A 116 "
            model="   1" pdb=" HB2 ASP A 116 "
     model   vdw
     1.717 2.270
  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 0.97
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 1.09 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.


  nonbonded model="   1" pdb=" H3  MET A   1 "
            model="   1" pdb=" OD1 ASP A  47 "
     model   vdw
     1.717 1.850
  nonbonded model="   1" pdb="HD22 LEU A   3 "
            model="   1" pdb="HD22 LEU A  53 "
     model   vdw
     1.807 2.440
  nonbonded model="   1" pdb=" OE2 GLU A  55 "
            model="   1" pdb="HH11 ARG A  58 "
     model   vdw
     1.820 1.850
  nonbonded model="   1" pdb=" OE2 GLU A  16 "
            model="   1" pdb=" HZ1 LYS A  19 "
     model   vdw
     1.823 1.850
  ... (remaining 26677 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 1.04
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 1.18 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.


  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 0.96
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 1.09 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 117
        1.23 -     1.43: 359
        1.43 -     1.63: 655
        1.63 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" C   SER A  98 "
       model="   1" pdb=" O   SER A  98 "
    ideal  model  delta    sigma   weight residual
    1.231  1.158  0.073 2.00e-02 2.50e+03 1.31e+01
  bond model="   1" pdb=" C   THR A  92 "
       model="   1" pdb=" O   THR A  92 "
    ideal  model  delta    sigma   weight residual
    1.231  1.160  0.071 2.00e-02 2.50e+03 1.26e+01
  bond model="   1" pdb=" CE1 HIS A 136 "
       model="   1" pdb=" NE2 HIS A 136 "
    ideal  model  delta    sigma   weight residual
    1.321  1.356 -0.035 1.00e-02 1.00e+04 1.20e+01
  bond model="   1" pdb=" CE1 HIS A 134 "
       model="   1" pdb=" NE2 HIS A 134 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.18e+01
  bond model="   1" pdb=" CE1 HIS A 137 "
       model="   1" pdb=" NE2 HIS A 137 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.17e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       92.74 -   100.84: 20
      100.84 -   108.93: 922
      108.93 -   117.02: 2094
      117.02 -   125.12: 971
      125.12 -   133.21: 70
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" C   SER A  98 "
        model="   1" pdb=" CA  SER A  98 "
        model="   1" pdb=" CB  SER A  98 "
      ideal   model   delta    sigma   weight residual
     110.10   97.97   12.13 1.90e+00 2.77e-01 4.08e+01
  angle model="   1" pdb=" CA  ILE A  30 "
        model="   1" pdb=" CB  ILE A  30 "
        model="   1" pdb=" CG1 ILE A  30 "
      ideal   model   delta    sigma   weight residual
     110.40  120.26   -9.86 1.70e+00 3.46e-01 3.36e+01
  angle model="   1" pdb=" CA  LYS A 101 "
        model="   1" pdb=" C   LYS A 101 "
        model="   1" pdb=" N   PRO A 102 "
      ideal   model   delta    sigma   weight residual
     116.90  125.37   -8.47 1.50e+00 4.44e-01 3.19e+01
  angle model="   1" pdb=" C   LEU A  61 "
        model="   1" pdb=" CA  LEU A  61 "
        model="   1" pdb=" CB  LEU A  61 "
      ideal   model   delta    sigma   weight residual
     110.10   99.55   10.55 1.90e+00 2.77e-01 3.08e+01
  angle model="   1" pdb=" N   LEU A  93 "
        model="   1" pdb=" CA  LEU A  93 "
        model="   1" pdb=" HA  LEU A  93 "
      ideal   model   delta    sigma   weight residual
     110.00   93.37   16.63 3.00e+00 1.11e-01 3.07e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    18.04: 973
       18.04 -    36.08: 42
       36.08 -    54.12: 13
       54.12 -    72.16: 1
       72.16 -    90.20: 3
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" CA  PRO A 117 "
           model="   1" pdb=" C   PRO A 117 "
           model="   1" pdb=" N   ASP A 118 "
           model="   1" pdb=" CA  ASP A 118 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  145.47   34.53     0      5.00e+00 4.00e-02 4.77e+01
  dihedral model="   1" pdb=" CA  LEU A 119 "
           model="   1" pdb=" C   LEU A 119 "
           model="   1" pdb=" N   GLU A 120 "
           model="   1" pdb=" CA  GLU A 120 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  150.42   29.58     0      5.00e+00 4.00e-02 3.50e+01
  dihedral model="   1" pdb=" C   ILE A  86 "
           model="   1" pdb=" N   ILE A  86 "
           model="   1" pdb=" CA  ILE A  86 "
           model="   1" pdb=" CB  ILE A  86 "
      ideal   model   delta  harmonic     sigma   weight residual
    -122.00 -136.63   14.63     0      2.50e+00 1.60e-01 3.43e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.000 -    0.130: 124
       0.130 -    0.259: 38
       0.259 -    0.388: 7
       0.388 -    0.518: 2
      
  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 1.08
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 1.23 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

 0.518 -    0.647: 5
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CB  ILE A  78 "
            model="   1" pdb=" CA  ILE A  78 "
            model="   1" pdb=" CG1 ILE A  78 "
            model="   1" pdb=" CG2 ILE A  78 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.64    2.00    0.65 2.00e-01 2.50e+01 1.05e+01
  chirality model="   1" pdb=" CA  PRO A  52 "
            model="   1" pdb=" N   PRO A  52 "
            model="   1" pdb=" C   PRO A  52 "
            model="   1" pdb=" CB  PRO A  52 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.72    2.13    0.59 2.00e-01 2.50e+01 8.58e+00
  chirality model="   1" pdb=" CA  GLU A  75 "
            model="   1" pdb=" N   GLU A  75 "
            model="   1" pdb=" C   GLU A  75 "
            model="   1" pdb=" CB  GLU A  75 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    1.94    0.57 2.00e-01 2.50e+01 8.09e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  89 "    0.260 2.00e-02 2.50e+03   1.27e-01 4.83e+02
        model="   1" pdb=" CG  TYR A  89 "    0.022 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  89 "   -0.043 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  89 "   -0.052 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  89 "   -0.064 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  89 "   -0.037 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  89 "    0.019 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  89 "    0.275 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  89 "   -0.073 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  89 "   -0.110 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  89 "   -0.133 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  89 "   -0.064 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  PHE A  67 "   -0.050 2.00e-02 2.50e+03   9.21e-02 2.55e+02
        model="   1" pdb=" CG  PHE A  67 "    0.038 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 PHE A  67 "    0.064 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 PHE A  67 "   -0.028 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 PHE A  67 "   -0.058 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 PHE A  67 "    0.035 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  PHE A  67 "    0.011 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 PHE A  67 "    0.164 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 PHE A  67 "   -0.118 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 PHE A  67 "   -0.193 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 PHE A  67 "    0.093 2.00e-02 2.50e+03
        model="   1" pdb=" HZ  PHE A  67 "    0.041 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A 105 "    0.117 2.00e-02 2.50e+03   7.95e-02 1.89e+02
        model="   1" pdb=" CG  TYR A 105 "   -0.019 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A 105 "   -0.065 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A 105 "   -0.001 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A 105 "    0.049 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A 105 "   -0.018 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A 105 "    0.034 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A 105 "   -0.020 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A 105 "   -0.174 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A 105 "    0.022 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A 105 "    0.136 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A 105 "   -0.063 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.70 -     2.28: 376
        2.28 -     2.86: 5211
        2.86 -     3.44: 5667
        3.44 -     4.02: 7418
        4.02 -     4.60: 11060
  Nonbonded interactions: 29732
  Sorted by model distance:
  nonbonded model="   1" pdb=" HZ2 LYS A  40 "
            model="   1" pdb=" OE2 GLU A 123 "
     model   vdw
     1.702 1.850
  nonbonded model="   1" pdb="HD23 LEU A  26 "
            model="   1" pdb="HE22 GLN A  66 "
     model   vdw
     1.714 2.270
  nonbonded model="   1" pdb=" HB3 PRO A 102 "
            model="   1" pdb=" H   ALA A 124 "
     model   vdw
     1.724 2.270
  nonbonded model="   1" pdb="HD11 ILE A  37 "
            model="   1" pdb=" HE  ARG A  58 "
     model   vdw
     1.745 2.270
  nonbonded model="   1" pdb="HG22 ILE A  86 "
            model="   1" pdb=" H   GLY A  87 "
     model   vdw
     1.747 2.270
  ... (remaining 29727 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 0.98
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 1.11 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.


  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 0.99
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 1.12 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.


  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 0.97
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 1.10 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.


  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 1.00
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 1.13 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.


  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 1.00
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 1.14 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.


  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 1.00
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 1.13 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 72
        1.23 -     1.43: 394
        1.43 -     1.63: 665
        1.63 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" CE1 HIS A 139 "
       model="   1" pdb=" NE2 HIS A 139 "
    ideal  model  delta    sigma   weight residual
    1.321  1.359 -0.038 1.00e-02 1.00e+04 1.41e+01
  bond model="   1" pdb=" CE1 HIS A 137 "
       model="   1" pdb=" NE2 HIS A 137 "
    ideal  model  delta    sigma   weight residual
    1.321  1.358 -0.037 1.00e-02 1.00e+04 1.41e+01
  bond model="   1" pdb=" CE1 HIS A 134 "
       model="   1" pdb=" NE2 HIS A 134 "
    ideal  model  delta    sigma   weight residual
    1.321  1.358 -0.037 1.00e-02 1.00e+04 1.38e+01
  bond model="   1" pdb=" CE1 HIS A 136 "
       model="   1" pdb=" NE2 HIS A 136 "
    ideal  model  delta    sigma   weight residual
    1.321  1.358 -0.037 1.00e-02 1.00e+04 1.38e+01
  bond model="   1" pdb=" CE1 HIS A 135 "
       model="   1" pdb=" NE2 HIS A 135 "
    ideal  model  delta    sigma   weight residual
    1.321  1.358 -0.037 1.00e-02 1.00e+04 1.35e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       97.02 -   104.00: 46
      104.00 -   110.98: 2286
      110.98 -   117.96: 782
      117.96 -   124.93: 885
      124.93 -   131.91: 78
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" CA  ILE A  51 "
        model="   1" pdb=" C   ILE A  51 "
        model="   1" pdb=" N   PRO A  52 "
      ideal   model   delta    sigma   weight residual
     116.90  128.02  -11.12 1.50e+00 4.44e-01 5.50e+01
  angle model="   1" pdb=" CD2 LEU A   2 "
        model="   1" pdb=" CG  LEU A   2 "
        model="   1" pdb=" HG  LEU A   2 "
      ideal   model   delta    sigma   weight residual
     108.00  123.97  -15.97 3.00e+00 1.11e-01 2.83e+01
  angle model="   1" pdb=" CB  GLN A  66 "
        model="   1" pdb=" CG  GLN A  66 "
        model="   1" pdb=" CD  GLN A  66 "
      ideal   model   delta    sigma   weight residual
     112.60  121.55   -8.95 1.70e+00 3.46e-01 2.77e+01
  angle model="   1" pdb=" CD1 LEU A   2 "
        model="   1" pdb=" CG  LEU A   2 "
        model="   1" pdb=" CD2 LEU A   2 "
      ideal   model   delta    sigma   weight residual
     110.80   99.59   11.21 2.20e+00 2.07e-01 2.60e+01
  angle model="   1" pdb=" CB  LEU A   2 "
        model="   1" pdb=" CG  LEU A   2 "
        model="   1" pdb=" CD1 LEU A   2 "
      ideal   model   delta    sigma   weight residual
     110.70  125.43  -14.73 3.00e+00 1.11e-01 2.41e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    13.01: 947
       13.01 -    26.02: 60
       26.02 -    39.04: 15
       39.04 -    52.05: 7
       52.05 -    65.06: 3
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" C   VAL A  14 "
           model="   1" pdb=" N   VAL A  14 "
           model="   1" pdb=" CA  VAL A  14 "
           model="   1" pdb=" CB  VAL A  14 "
      ideal   model   delta  harmonic     sigma   weight residual
    -122.00 -139.66   17.66     0      2.50e+00 1.60e-01 4.99e+01
  dihedral model="   1" pdb=" C   ILE A  86 "
           model="   1" pdb=" N   ILE A  86 "
           model="   1" pdb=" CA  ILE A  86 "
           model="   1" pdb=" CB  ILE A  86 "
      ideal   model   delta  harmonic     sigma   weight residual
    -122.00 -137.52   15.52     0      2.50e+00 1.60e-01 3.85e+01
  dihedral model="   1" pdb=" CA  ASP A 116 "
           model="   1" pdb=" C   ASP A 116 "
           model="   1" pdb=" N   PRO A 117 "
           model="   1" pdb=" CA  PRO A 117 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  149.64   30.36     0      5.00e+00 4.00e-02 3.69e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.000 -    0.108: 139
       0.108 -    0.216: 27
       0.216 -    0.324: 8
       0.324 -    0.432: 0
       0.432 -    0.540: 2
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  VAL A  14 "
            model="   1" pdb=" N   VAL A  14 "
            model="   1" pdb=" C   VAL A  14 "
            model="   1" pdb=" CB  VAL A  14 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.44    1.90    0.54 2.00e-01 2.50e+01 7.29e+00
  chirality model="   1" pdb=" CA  ILE A  86 "
            model="   1" pdb=" N   ILE A  86 "
            model="   1" pdb=" C   ILE A  86 "
            model="   1" pdb=" CB  ILE A  86 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.43    1.97    0.47 2.00e-01 2.50e+01 5.41e+00
  chirality model="   1" pdb=" CB  VAL A  18 "
            model="   1" pdb=" CA  VAL A  18 "
            model="   1" pdb=" CG1 VAL A  18 "
            model="   1" pdb=" CG2 VAL A  18 "
    both_signs  ideal   model   delta    sigma   weight residual
      False     -2.63   -2.31   -0.32 2.00e-01 2.50e+01 2.58e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A 105 "    0.139 2.00e-02 2.50e+03   6.80e-02 1.39e+02
        model="   1" pdb=" CG  TYR A 105 "   -0.014 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A 105 "   -0.011 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A 105 "   -0.058 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A 105 "   -0.019 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A 105 "    0.024 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A 105 "    0.024 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A 105 "    0.036 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A 105 "   -0.003 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A 105 "   -0.143 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A 105 "   -0.054 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A 105 "    0.079 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  PHE A  15 "    0.088 2.00e-02 2.50e+03   5.11e-02 7.85e+01
        model="   1" pdb=" CG  PHE A  15 "    0.047 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 PHE A  15 "   -0.017 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 PHE A  15 "   -0.016 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 PHE A  15 "   -0.012 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 PHE A  15 "   -0.013 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  PHE A  15 "    0.034 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 PHE A  15 "   -0.063 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 PHE A  15 "   -0.061 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 PHE A  15 "   -0.039 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 PHE A  15 "   -0.041 2.00e-02 2.50e+03
        model="   1" pdb=" HZ  PHE A  15 "    0.093 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  12 "    0.053 2.00e-02 2.50e+03   3.69e-02 4.09e+01
        model="   1" pdb=" CG  TYR A  12 "    0.002 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  12 "   -0.003 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  12 "   -0.027 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  12 "    0.001 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  12 "    0.025 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  12 "    0.042 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  12 "   -0.026 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  12 "   -0.009 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  12 "   -0.083 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  12 "   -0.023 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  12 "    0.048 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.72 -     2.29: 321
        2.29 -     2.87: 5116
        2.87 -     3.45: 5169
        3.45 -     4.02: 6672
        4.02 -     4.60: 9888
  Nonbonded interactions: 27166
  Sorted by model distance:
  nonbonded model="   1" pdb=" OE2 GLU A  84 "
            model="   1" pdb=" HZ3 LYS A  85 "
     model   vdw
     1.715 1.850
  nonbonded model="   1" pdb=" OE2 GLU A   8 "
            model="   1" pdb="HH21 ARG A  58 "
     model   vdw
     1.794 1.850
  nonbonded model="   1" pdb=" HZ1 LYS A  10 "
            model="   1" pdb=" OD1 ASP A  23 "
     model   vdw
     1.832 1.850
  nonbonded model="   1" pdb=" HA  LYS A  10 "
            model="   1" pdb="HG11 VAL A  18 "
     model   vdw
     1.841 2.440
  nonbonded model="   1" pdb=" OE1 GLU A  49 "
            model="   1" pdb=" H   GLU A  49 "
     model   vdw
     1.846 1.850
  ... (remaining 27161 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 1.01
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 1.15 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 134
        1.23 -     1.43: 338
        1.43 -     1.63: 659
        1.63 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" CD  ARG A  21 "
       model="   1" pdb=" NE  ARG A  21 "
    ideal  model  delta    sigma   weight residual
    1.458  1.507 -0.049 1.40e-02 5.10e+03 1.23e+01
  bond model="   1" pdb=" CD  ARG A 129 "
       model="   1" pdb=" NE  ARG A 129 "
    ideal  model  delta    sigma   weight residual
    1.458  1.505 -0.047 1.40e-02 5.10e+03 1.15e+01
  bond model="   1" pdb=" CE1 HIS A 134 "
       model="   1" pdb=" NE2 HIS A 134 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.14e+01
  bond model="   1" pdb=" CE1 HIS A 136 "
       model="   1" pdb=" NE2 HIS A 136 "
    ideal  model  delta    sigma   weight residual
    1.321  1.354 -0.033 1.00e-02 1.00e+04 1.10e+01
  bond model="   1" pdb=" CE1 HIS A 139 "
       model="   1" pdb=" NE2 HIS A 139 "
    ideal  model  delta    sigma   weight residual
    1.321  1.354 -0.033 1.00e-02 1.00e+04 1.10e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       95.14 -   102.46: 24
      102.46 -   109.77: 2002
      109.77 -   117.09: 1020
      117.09 -   124.40: 937
      124.40 -   131.72: 94
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" CD1 LEU A  53 "
        model="   1" pdb=" CG  LEU A  53 "
        model="   1" pdb=" CD2 LEU A  53 "
      ideal   model   delta    sigma   weight residual
     110.80  127.67  -16.87 2.20e+00 2.07e-01 5.88e+01
  angle model="   1" pdb=" C   ALA A 124 "
        model="   1" pdb=" CA  ALA A 124 "
        model="   1" pdb=" CB  ALA A 124 "
      ideal   model   delta    sigma   weight residual
     110.50  101.49    9.01 1.50e+00 4.44e-01 3.61e+01
  angle model="   1" pdb=" C   ILE A  86 "
        model="   1" pdb=" CA  ILE A  86 "
        model="   1" pdb=" CB  ILE A  86 "
      ideal   model   delta    sigma   weight residual
     111.60  123.58  -11.98 2.00e+00 2.50e-01 3.59e+01
  angle model="   1" pdb=" N   THR A  82 "
        model="   1" pdb=" CA  THR A  82 "
        model="   1" pdb=" CB  THR A  82 "
      ideal   model   delta    sigma   weight residual
     111.50  120.90   -9.40 1.70e+00 3.46e-01 3.06e+01
  angle model="   1" pdb=" CB  LEU A  53 "
        model="   1" pdb=" CG  LEU A  53 "
        model="   1" pdb=" HG  LEU A  53 "
      ideal   model   delta    sigma   weight residual
     109.00  124.99  -15.99 3.00e+00 1.11e-01 2.84e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    13.58: 938
       13.58 -    27.17: 65
       27.17 -    40.75: 16
       40.75 -    54.33: 8
       54.33 -    67.91: 5
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" CA  ILE A  86 "
           model="   1" pdb=" C   ILE A  86 "
           model="   1" pdb=" N   GLY A  87 "
           model="   1" pdb=" CA  GLY A  87 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  151.01   28.99     0      5.00e+00 4.00e-02 3.36e+01
  dihedral model="   1" pdb=" N   PHE A  45 "
           model="   1" pdb=" C   PHE A  45 "
           model="   1" pdb=" CA  PHE A  45 "
           model="   1" pdb=" CB  PHE A  45 "
      ideal   model   delta  harmonic     sigma   weight residual
     122.80  137.17  -14.37     0      2.50e+00 1.60e-01 3.30e+01
  dihedral model="   1" pdb=" CA  PHE A  45 "
           model="   1" pdb=" C   PHE A  45 "
           model="   1" pdb=" N   SER A  46 "
           model="   1" pdb=" CA  SER A  46 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  155.95   24.05     0      5.00e+00 4.00e-02 2.31e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.001 -    0.117: 134
       0.117 -    0.233: 31
       0.233 -    0.349: 10
       0.349 -    0.465: 0
    
  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 1.02
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 1.16 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.


  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 1.01
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 1.14 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

   0.465 -    0.581: 1
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  PHE A  45 "
            model="   1" pdb=" N   PHE A  45 "
            model="   1" pdb=" C   PHE A  45 "
            model="   1" pdb=" CB  PHE A  45 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    1.93    0.58 2.00e-01 2.50e+01 8.44e+00
  chirality model="   1" pdb=" CG  LEU A  53 "
            model="   1" pdb=" CB  LEU A  53 "
            model="   1" pdb=" CD1 LEU A  53 "
            model="   1" pdb=" CD2 LEU A  53 "
    both_signs  ideal   model   delta    sigma   weight residual
      False     -2.59   -2.27   -0.32 2.00e-01 2.50e+01 2.63e+00
  chirality model="   1" pdb=" CA  TYR A  50 "
            model="   1" pdb=" N   TYR A  50 "
            model="   1" pdb=" C   TYR A  50 "
            model="   1" pdb=" CB  TYR A  50 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.19    0.32 2.00e-01 2.50e+01 2.50e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  PHE A  15 "    0.002 2.00e-02 2.50e+03   1.01e-01 3.07e+02
        model="   1" pdb=" CG  PHE A  15 "    0.022 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 PHE A  15 "    0.054 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 PHE A  15 "   -0.055 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 PHE A  15 "   -0.049 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 PHE A  15 "    0.061 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  PHE A  15 "   -0.006 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 PHE A  15 "    0.145 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 PHE A  15 "   -0.186 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 PHE A  15 "   -0.147 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 PHE A  15 "    0.181 2.00e-02 2.50e+03
        model="   1" pdb=" HZ  PHE A  15 "   -0.021 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  91 "    0.206 2.00e-02 2.50e+03   9.31e-02 2.60e+02
        model="   1" pdb=" CG  TYR A  91 "    0.050 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  91 "   -0.033 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  91 "   -0.054 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  91 "   -0.024 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  91 "   -0.003 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  91 "    0.038 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  91 "    0.127 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  91 "   -0.094 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  91 "   -0.157 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  91 "   -0.058 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  91 "    0.002 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  12 "    0.025 2.00e-02 2.50e+03   5.75e-02 9.90e+01
        model="   1" pdb=" CG  TYR A  12 "    0.009 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  12 "   -0.010 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  12 "   -0.018 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  12 "    0.034 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  12 "    0.042 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  12 "    0.061 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  12 "   -0.127 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  12 "   -0.053 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  12 "   -0.077 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  12 "    0.046 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  12 "    0.069 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.73 -     2.31: 408
        2.31 -     2.88: 5135
        2.88 -     3.45: 5407
        3.45 -     4.03: 6890
        4.03 -     4.60: 10150
  Nonbonded interactions: 27990
  Sorted by model distance:
  nonbonded model="   1" pdb=" HA  TYR A  68 "
            model="   1" pdb="HD22 ASN A  72 "
     model   vdw
     1.734 2.270
  nonbonded model="   1" pdb=" HZ3 LYS A 109 "
            model="   1" pdb=" OD2 ASP A 118 "
     model   vdw
     1.753 1.850
  nonbonded model="   1" pdb=" OE1 GLU A  55 "
            model="   1" pdb=" HE  ARG A  58 "
     model   vdw
     1.764 1.850
  nonbonded model="   1" pdb=" OE2 GLU A  55 "
            model="   1" pdb="HH21 ARG A  58 "
     model   vdw
     1.801 1.850
  nonbonded model="   1" pdb=" HG  LEU A  62 "
            model="   1" pdb="HE21 GLN A  66 "
     model   vdw
     1.820 2.270
  ... (remaining 27985 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.
  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 110
        1.23 -     1.43: 361
        1.43 -     1.63: 660
        1.63 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" CE1 HIS A 134 "
       model="   1" pdb=" NE2 HIS A 134 "
    ideal  model  delta    sigma   weight residual
    1.321  1.363 -0.042 1.00e-02 1.00e+04 1.79e+01
  bond model="   1" pdb=" CE1 HIS A 137 "
       model="   1" pdb=" NE2 HIS A 137 "
    ideal  model  delta    sigma   weight residual
    1.321  1.361 -0.040 1.00e-02 1.00e+04 1.63e+01
  bond model="   1" pdb=" CE1 HIS A 138 "
       model="   1" pdb=" NE2 HIS A 138 "
    ideal  model  delta    sigma   weight residual
    1.321  1.361 -0.040 1.00e-02 1.00e+04 1.62e+01
  bond model="   1" pdb=" CE1 HIS A 136 "
       model="   1" pdb=" NE2 HIS A 136 "
    ideal  model  delta    sigma   weight residual
    1.321  1.359 -0.038 1.00e-02 1.00e+04 1.46e+01
  bond model="   1" pdb=" CE1 HIS A 139 "
       model="   1" pdb=" NE2 HIS A 139 "
    ideal  model  delta    sigma   weight residual
    1.321  1.359 -0.038 1.00e-02 1.00e+04 1.44e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       95.68 -   103.28: 26
      103.28 -   110.87: 2274
      110.87 -   118.47: 861
      118.47 -   126.07: 884
      126.07 -   133.67: 32
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" CA  ILE A  30 "
        model="   1" pdb=" CB  ILE A  30 "
        model="   1" pdb=" CG1 ILE A  30 "
      ideal   model   delta    sigma   weight residual
     110.40  122.83  -12.43 1.70e+00 3.46e-01 5.35e+01
  angle model="   1" pdb=" N   PRO A 114 "
        model="   1" pdb=" CA  PRO A 114 "
        model="   1" pdb=" C   PRO A 114 "
      ideal   model   delta    sigma   weight residual
     112.10  125.43  -13.33 2.50e+00 1.60e-01 2.84e+01
  angle model="   1" pdb=" N   PRO A 114 "
        model="   1" pdb=" CD  PRO A 114 "
        model="   1" pdb=" CG  PRO A 114 "
      ideal   model   delta    sigma   weight residual
     103.20  110.65   -7.45 1.50e+00 4.44e-01 2.47e+01
  angle model="   1" pdb=" ND1 HIS A 134 "
        model="   1" pdb=" CG  HIS A 134 "
        model="   1" pdb=" CD2 HIS A 134 "
      ideal   model   delta    sigma   weight residual
     106.10  110.82   -4.72 1.00e+00 1.00e+00 2.23e+01
  angle model="   1" pdb=" C   LYS A 113 "
        model="   1" pdb=" CA  LYS A 113 "
        model="   1" pdb=" CB  LYS A 113 "
      ideal   model   delta    sigma   weight residual
     110.10  118.79   -8.69 1.90e+00 2.77e-01 2.09e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    15.66: 989
       15.66 -    31.32: 37
       31.32 -    46.98: 3
       46.98 -    62.65: 2
       62.65 -    78.31: 1
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" CA  TYR A  91 "
           model="   1" pdb=" C   TYR A  91 "
           model="   1" pdb=" N   THR A  92 "
           model="   1" pdb=" CA  THR A  92 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  150.02   29.98     0      5.00e+00 4.00e-02 3.60e+01
  dihedral model="   1" pdb=" CA  GLY A  87 "
           model="   1" pdb=" C   GLY A  87 "
           model="   1" pdb=" N   ASP A  88 "
           model="   1" pdb=" CA  ASP A  88 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  154.77   25.23     0      5.00e+00 4.00e-02 2.55e+01
  dihedral model="   1" pdb=" N   LYS A  85 "
           model="   1" pdb=" C   LYS A  85 "
           model="   1" pdb=" CA  LYS A  85 "
           model="   1" pdb=" CB  LYS A  85 "
      ideal   model   delta  harmonic     sigma   weight residual
     122.80  135.20  -12.40     0      2.50e+00 1.60e-01 2.46e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.002 -    0.095: 119
       0.095 -    0.189: 43
       0.189 -    0.282: 9
       0.282 -    0.375: 3
       0.375 -    0.469: 2
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  LYS A  85 "
            model="   1" pdb=" N   LYS A  85 "
            model="   1" pdb=" C   LYS A  85 "
            model="   1" pdb=" CB  LYS A  85 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.04    0.47 2.00e-01 2.50e+01 5.50e+00
  chirality model="   1" pdb=" CA  PRO A 114 "
            model="   1" pdb=" N   PRO A 114 "
            model="   1" pdb=" C   PRO A 114 "
            model="   1" pdb=" CB  PRO A 114 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.72    2.28    0.44 2.00e-01 2.50e+01 4.83e+00
  chirality model="   1" pdb=" CA  TYR A  91 "
            model="   1" pdb=" N   TYR A  91 "
            model="   1" pdb=" C   TYR A  91 "
            model="   1" pdb=" CB  TYR A  91 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.17    0.34 2.00e-01 2.50e+01 2.85e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  50 "    0.072 2.00e-02 2.50e+03   5.06e-02 7.68e+01
        model="   1" pdb=" CG  TYR A  50 "    0.018 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  50 "   -0.027 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  50 "    0.005 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  50 "   -0.004 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  50 "   -0.037 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  50 "   -0.016 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  50 "    0.101 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  50 "   -0.074 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  50 "    0.023 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  50 "    0.019 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  50 "   -0.079 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  12 "   -0.092 2.00e-02 2.50e+03   4.85e-02 7.05e+01
        model="   1" pdb=" CG  TYR A  12 "   -0.008 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  12 "    0.005 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  12 "    0.030 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  12 "    0.027 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  12 "    0.001 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  12 "   -0.014 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  12 "   -0.085 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  12 "   -0.001 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  12 "    0.076 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  12 "    0.069 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  12 "   -0.009 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  PHE A  15 "    0.002 2.00e-02 2.50e+03   4.15e-02 5.17e+01
        model="   1" pdb=" CG  PHE A  15 "    0.012 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 PHE A  15 "   -0.019 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 PHE A  15 "    0.023 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 PHE A  15 "    0.013 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 PHE A  15 "   -0.029 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  PHE A  15 "    0.012 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 PHE A  15 "   -0.061 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 PHE A  15 "    0.064 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 PHE A  15 "    0.035 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 PHE A  15 "   -0.090 2.00e-02 2.50e+03
        model="   1" pdb=" HZ  PHE A  15 "    0.038 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.72 -     2.30: 367
        2.30 -     2.87: 5031
  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 1.01
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 1.14 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.


  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 1.01
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 1.15 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.


  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 1.03
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 1.16 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.


        2.87 -     3.45: 5212
        3.45 -     4.02: 6448
        4.02 -     4.60: 9890
  Nonbonded interactions: 26948
  Sorted by model distance:
  nonbonded model="   1" pdb=" OE2 GLU A  75 "
            model="   1" pdb=" HZ1 LYS A  79 "
     model   vdw
     1.722 1.850
  nonbonded model="   1" pdb=" OD2 ASP A  95 "
            model="   1" pdb=" HZ3 LYS A 101 "
     model   vdw
     1.727 1.850
  nonbonded model="   1" pdb="HD13 ILE A  37 "
            model="   1" pdb="HE21 GLN A 100 "
     model   vdw
     1.729 2.270
  nonbonded model="   1" pdb=" HB3 LYS A 113 "
            model="   1" pdb=" HD2 PRO A 114 "
     model   vdw
     1.736 2.440
  nonbonded model="   1" pdb="HD12 ILE A   4 "
            model="   1" pdb="HD23 LEU A  62 "
     model   vdw
     1.776 2.440
  ... (remaining 26943 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 1.05
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 1.18 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 126
        1.23 -     1.43: 339
        1.43 -     1.62: 666
        1.62 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" C   ILE A  30 "
       model="   1" pdb=" N   LEU A  31 "
    ideal  model  delta    sigma   weight residual
    1.329  1.385 -0.056 1.40e-02 5.10e+03 1.57e+01
  bond model="   1" pdb=" CE1 HIS A 135 "
       model="   1" pdb=" NE2 HIS A 135 "
    ideal  model  delta    sigma   weight residual
    1.321  1.356 -0.035 1.00e-02 1.00e+04 1.24e+01
  bond model="   1" pdb=" CE1 HIS A 138 "
       model="   1" pdb=" NE2 HIS A 138 "
    ideal  model  delta    sigma   weight residual
    1.321  1.356 -0.035 1.00e-02 1.00e+04 1.20e+01
  bond model="   1" pdb=" CE1 HIS A 137 "
       model="   1" pdb=" NE2 HIS A 137 "
    ideal  model  delta    sigma   weight residual
    1.321  1.356 -0.035 1.00e-02 1.00e+04 1.19e+01
  bond model="   1" pdb=" CE1 HIS A 134 "
       model="   1" pdb=" NE2 HIS A 134 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.18e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       87.47 -    96.55: 2
       96.55 -   105.63: 146
      105.63 -   114.72: 2777
      114.72 -   123.80: 992
      123.80 -   132.88: 160
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" CA  ILE A  30 "
        model="   1" pdb=" CB  ILE A  30 "
        model="   1" pdb=" CG1 ILE A  30 "
      ideal   model   delta    sigma   weight residual
     110.40  129.41  -19.01 1.70e+00 3.46e-01 1.25e+02
  angle model="   1" pdb=" CA  ASP A  95 "
        model="   1" pdb=" CB  ASP A  95 "
        model="   1" pdb=" CG  ASP A  95 "
      ideal   model   delta    sigma   weight residual
     112.60  104.33    8.27 1.00e+00 1.00e+00 6.85e+01
  angle model="   1" pdb=" CA  ILE A  30 "
        model="   1" pdb=" CB  ILE A  30 "
        model="   1" pdb=" HB  ILE A  30 "
      ideal   model   delta    sigma   weight residual
     109.00   87.47   21.53 3.00e+00 1.11e-01 5.15e+01
  angle model="   1" pdb=" O   GLN A 100 "
        model="   1" pdb=" C   GLN A 100 "
        model="   1" pdb=" N   LYS A 101 "
      ideal   model   delta    sigma   weight residual
     123.00  113.08    9.92 1.60e+00 3.91e-01 3.84e+01
  angle model="   1" pdb=" CA  ASP A  29 "
        model="   1" pdb=" CB  ASP A  29 "
        model="   1" pdb=" CG  ASP A  29 "
      ideal   model   delta    sigma   weight residual
     112.60  107.07    5.53 1.00e+00 1.00e+00 3.06e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    15.40: 970
       15.40 -    30.80: 45
       30.80 -    46.20: 10
       46.20 -    61.59: 5
       61.59 -    76.99: 2
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" CA  VAL A 126 "
           model="   1" pdb=" C   VAL A 126 "
           model="   1" pdb=" N   ARG A 127 "
           model="   1" pdb=" CA  ARG A 127 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  158.43   21.57     0      5.00e+00 4.00e-02 1.86e+01
  dihedral model="   1" pdb=" CA  LYS A 101 "
           model="   1" pdb=" C   LYS A 101 "
           model="   1" pdb=" N   PRO A 102 "
           model="   1" pdb=" CA  PRO A 102 "
      ideal   model   delta  harmonic     sigma   weight residual
    -180.00 -158.64  -21.36     0      5.00e+00 4.00e-02 1.82e+01
  dihedral model="   1" pdb=" CA  LEU A  99 "
           model="   1" pdb=" C   LEU A  99 "
           model="   1" pdb=" N   GLN A 100 "
           model="   1" pdb=" CA  GLN A 100 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  159.03   20.97     0      5.00e+00 4.00e-02 1.76e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.000 -    0.148: 147
       0.148 -    0.296: 26
       0.296 -    0.444: 2
       0.444 -    0.592: 0
      
  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 0.99
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 1.12 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

 0.592 -    0.740: 1
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CB  ILE A  30 "
            model="   1" pdb=" CA  ILE A  30 "
            model="   1" pdb=" CG1 ILE A  30 "
            model="   1" pdb=" CG2 ILE A  30 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.64    1.90    0.74 2.00e-01 2.50e+01 1.37e+01
  chirality model="   1" pdb=" CA  ASP A  88 "
            model="   1" pdb=" N   ASP A  88 "
            model="   1" pdb=" C   ASP A  88 "
            model="   1" pdb=" CB  ASP A  88 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.13    0.38 2.00e-01 2.50e+01 3.61e+00
  chirality model="   1" pdb=" CA  PRO A 102 "
            model="   1" pdb=" N   PRO A 102 "
            model="   1" pdb=" C   PRO A 102 "
            model="   1" pdb=" CB  PRO A 102 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.72    2.40    0.32 2.00e-01 2.50e+01 2.50e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  12 "    0.013 2.00e-02 2.50e+03   8.21e-02 2.02e+02
        model="   1" pdb=" CG  TYR A  12 "    0.013 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  12 "    0.039 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  12 "   -0.025 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  12 "   -0.071 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  12 "   -0.007 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  12 "   -0.025 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  12 "    0.148 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  12 "    0.130 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  12 "   -0.061 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  12 "   -0.173 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  12 "    0.018 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  50 "    0.026 2.00e-02 2.50e+03   7.21e-02 1.56e+02
        model="   1" pdb=" CG  TYR A  50 "    0.044 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  50 "   -0.041 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  50 "    0.026 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  50 "    0.054 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  50 "   -0.014 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  50 "    0.062 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  50 "   -0.053 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  50 "   -0.161 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  50 "    0.040 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  50 "    0.109 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  50 "   -0.091 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  PHE A  15 "   -0.000 2.00e-02 2.50e+03   6.92e-02 1.44e+02
        model="   1" pdb=" CG  PHE A  15 "   -0.008 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 PHE A  15 "   -0.037 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 PHE A  15 "    0.038 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 PHE A  15 "    0.036 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 PHE A  15 "   -0.040 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  PHE A  15 "    0.002 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 PHE A  15 "   -0.106 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 PHE A  15 "    0.121 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 PHE A  15 "    0.106 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 PHE A  15 "   -0.120 2.00e-02 2.50e+03
        model="   1" pdb=" HZ  PHE A  15 "    0.008 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.72 -     2.30: 354
        2.30 -     2.87: 5012
        2.87 -     3.45: 5291
        3.45 -     4.02: 6714
        4.02 -     4.60: 10132
  Nonbonded interactions: 27503
  Sorted by model distance:
  nonbonded model="   1" pdb="HG23 ILE A  30 "
            model="   1" pdb="HD21 LEU A  61 "
     model   vdw
     1.720 2.440
  nonbonded model="   1" pdb=" OE1 GLU A  16 "
            model="   1" pdb=" HZ2 LYS A  19 "
     model   vdw
     1.721 1.850
  nonbonded model="   1" pdb="HH11 ARG A 129 "
            model="   1" pdb=" OE1 GLU A 133 "
     model   vdw
     1.746 1.850
  nonbonded model="   1" pdb=" HB2 PRO A 102 "
            model="   1" pdb=" H   ASP A 103 "
     model   vdw
     1.769 2.270
  nonbonded model="   1" pdb="HG22 ILE A  77 "
            model="   1" pdb=" H   LYS A  79 "
     model   vdw
     1.785 2.270
  ... (remaining 27498 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.
  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 96
        1.23 -     1.43: 376
        1.43 -     1.63: 659
        1.63 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" CE1 HIS A 139 "
       model="   1" pdb=" NE2 HIS A 139 "
    ideal  model  delta    sigma   weight residual
    1.321  1.363 -0.042 1.00e-02 1.00e+04 1.73e+01
  bond model="   1" pdb=" CE1 HIS A 137 "
       model="   1" pdb=" NE2 HIS A 137 "
    ideal  model  delta    sigma   weight residual
    1.321  1.363 -0.042 1.00e-02 1.00e+04 1.73e+01
  bond model="   1" pdb=" CE1 HIS A 136 "
       model="   1" pdb=" NE2 HIS A 136 "
    ideal  model  delta    sigma   weight residual
    1.321  1.362 -0.041 1.00e-02 1.00e+04 1.67e+01
  bond model="   1" pdb=" CE1 HIS A  43 "
       model="   1" pdb=" NE2 HIS A  43 "
    ideal  model  delta    sigma   weight residual
    1.321  1.361 -0.040 1.00e-02 1.00e+04 1.62e+01
  bond model="   1" pdb=" CE1 HIS A 138 "
       model="   1" pdb=" NE2 HIS A 138 "
    ideal  model  delta    sigma   weight residual
    1.321  1.360 -0.039 1.00e-02 1.00e+04 1.55e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       96.33 -   103.69: 23
      103.69 -   111.05: 2329
      111.05 -   118.40: 816
      118.40 -   125.76: 873
      125.76 -   133.11: 36
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" CA  LYS A 113 "
        model="   1" pdb=" C   LYS A 113 "
        model="   1" pdb=" N   PRO A 114 "
      ideal   model   delta    sigma   weight residual
     116.90  125.29   -8.39 1.50e+00 4.44e-01 3.13e+01
  angle model="   1" pdb=" N   SER A  46 "
        model="   1" pdb=" CA  SER A  46 "
        model="   1" pdb=" CB  SER A  46 "
      ideal   model   delta    sigma   weight residual
     110.50  119.05   -8.55 1.70e+00 3.46e-01 2.53e+01
  angle model="   1" pdb=" CA  ASP A 116 "
        model="   1" pdb=" C   ASP A 116 "
        model="   1" pdb=" N   PRO A 117 "
      ideal   model   delta    sigma   weight residual
     116.90  123.89   -6.99 1.50e+00 4.44e-01 2.17e+01
  angle model="   1" pdb=" CA  LEU A  53 "
        model="   1" pdb=" C   LEU A  53 "
        model="   1" pdb=" N   PRO A  54 "
      ideal   model   delta    sigma   weight residual
     116.90  123.88   -6.98 1.50e+00 4.44e-01 2.17e+01
  angle model="   1" pdb=" N   SER A  46 "
        model="   1" pdb=" CA  SER A  46 "
        model="   1" pdb=" HA  SER A  46 "
      ideal   model   delta    sigma   weight residual
     110.00   96.33   13.67 3.00e+00 1.11e-01 2.07e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    16.26: 987
       16.26 -    32.52: 29
       32.52 -    48.79: 11
       48.79 -    65.05: 4
       65.05 -    81.31: 1
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" N   SER A  46 "
           model="   1" pdb=" C   SER A  46 "
           model="   1" pdb=" CA  SER A  46 "
           model="   1" pdb=" CB  SER A  46 "
      ideal   model   delta  harmonic     sigma   weight residual
     122.80  139.06  -16.26     0      2.50e+00 1.60e-01 4.23e+01
  dihedral model="   1" pdb=" C   SER A  46 "
           model="   1" pdb=" N   SER A  46 "
           model="   1" pdb=" CA  SER A  46 "
           model="   1" pdb=" CB  SER A  46 "
      ideal   model   delta  harmonic     sigma   weight residual
    -122.60 -135.27   12.67     0      2.50e+00 1.60e-01 2.57e+01
  dihedral model="   1" pdb=" CA  ILE A  77 "
           model="   1" pdb=" C   ILE A  77 "
           model="   1" pdb=" N   ILE A  78 "
           model="   1" pdb=" CA  ILE A  78 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  156.71   23.29     0      5.00e+00 4.00e-02 2.17e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.001 -    0.120: 147
       0.120 -    0.240: 24
       0.240 -    0.359: 3
       0.359 -    0.478: 1
       0.478 -    0.597: 1
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  SER A  46 "
            model="   1" pdb=" N   SER A  46 "
            model="   1" pdb=" C   SER A  46 "
            model="   1" pdb=" CB  SER A  46 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    1.91    0.60 2.00e-01 2.50e+01 8.92e+00
  chirality model="   1" pdb=" CA  SER A  90 "
            model="   1" pdb=" N   SER A  90 "
            model="   1" pdb=" C   SER A  90 "
            model="   1" pdb=" CB  SER A  90 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.15    0.36 2.00e-01 2.50e+01 3.25e+00
  chirality model="   1" pdb=" CA  PRO A  54 "
            model="   1" pdb=" N   PRO A  54 "
            model="   1" pdb=" C   PRO A  54 "
            model="   1" pdb=" CB  PRO A  54 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.72    2.45    0.26 2.00e-01 2.50e+01 1.74e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  12 "   -0.144 2.00e-02 2.50e+03   6.32e-02 1.20e+02
        model="   1" pdb=" CG  TYR A  12 "    0.002 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  12 "    0.018 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  12 "    0.048 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  12 "    0.020 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  12 "   -0.007 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  12 "   -0.028 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  12 "   -0.075 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  12 "    0.026 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  12 "    0.115 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  12 "    0.055 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  12 "   -0.030 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  68 "   -0.097 2.00e-02 2.50e+03   5.72e-02 9.81e+01
        model="   1" pdb=" CG  TYR A  68 "   -0.031 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  68 "    0.036 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  68 "    0.003 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  68 "   -0.013 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  68 "    0.021 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  68 "   -0.058 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  68 "   -0.058 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  68 "    0.112 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  68 "    0.013 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  68 "   -0.015 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  68 "    0.085 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  81 "    0.079 2.00e-02 2.50e+03   4.56e-02 6.25e+01
        model="   1" pdb=" CG  TYR A  81 "    0.019 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  81 "   -0.011 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  81 "   -0.014 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  81 "   -0.022 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  81 "   -0.020 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  81 "    0.004 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  81 "    0.108 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  81 "   -0.023 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  81 "   -0.031 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  81 "   -0.048 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  81 "   -0.041 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.72 -     2.30: 304
        2.30 -     2.87: 4971
        2.87 -     3.45: 4957
        3.45 -     4.02: 6269
        4.02 -     4.60: 9617
  Nonbonded interactions: 26118
  Sorted by model distance:
  nonbonded model="   1" pdb=" H   GLU A  49 "
            model="   1" pdb=" H   TYR A  50 "
     model   vdw
     1.719 2.100
  nonbonded model="   1" pdb=" HZ1 LYS A  10 "
            model="   1" pdb=" OD1 ASP A  23 "
     model   vdw
     1.736 1.850
  nonbonded model="   1" pdb=" HB3 LEU A   3 "
            model="   1" pdb="HD22 LEU A  53 "
     model   vdw
     1.840 2.440
  nonbonded model="   1" pdb=" O   HIS A 139 "
            model="   1" pdb=" H   HIS A 139 "
     model   vdw
     1.906 1.850
  nonbonded model="   1" pdb=" OE2 GLU A  16 "
            model="   1" pdb=" HZ2 LYS A  19 "
     model   vdw
     1.920 1.850
  ... (remaining 26113 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.
  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 114
        1.23 -     1.43: 358
        1.43 -     1.63: 659
        1.63 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" CE1 HIS A 139 "
       model="   1" pdb=" NE2 HIS A 139 "
    ideal  model  delta    sigma   weight residual
    1.321  1.359 -0.038 1.00e-02 1.00e+04 1.44e+01
  bond model="   1" pdb=" CE1 HIS A 135 "
       model="   1" pdb=" NE2 HIS A 135 "
    ideal  model  delta    sigma   weight residual
    1.321  1.359 -0.038 1.00e-02 1.00e+04 1.42e+01
  bond model="   1" pdb=" CE1 HIS A 138 "
       model="   1" pdb=" NE2 HIS A 138 "
    ideal  model  delta    sigma   weight residual
    1.321  1.358 -0.037 1.00e-02 1.00e+04 1.38e+01
  bond model="   1" pdb=" CE1 HIS A 137 "
       model="   1" pdb=" NE2 HIS A 137 "
    ideal  model  delta    sigma   weight residual
    1.321  1.358 -0.037 1.00e-02 1.00e+04 1.36e+01
  bond model="   1" pdb=" CE1 HIS A 136 "
       model="   1" pdb=" NE2 HIS A 136 "
    ideal  model  delta    sigma   weight residual
    1.321  1.358 -0.037 1.00e-02 1.00e+04 1.35e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       94.58 -   102.49: 15
      102.49 -   110.39: 2197
      110.39 -   118.29: 940
      118.29 -   126.20: 890
      126.20 -   134.10: 35
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" N   PRO A  52 "
        model="   1" pdb=" CA  PRO A  52 "
        model="   1" pdb=" C   PRO A  52 "
      ideal   model   delta    sigma   weight residual
     112.10  126.16  -14.06 2.50e+00 1.60e-01 3.16e+01
  angle model="   1" pdb=" CA  ILE A  77 "
        model="   1" pdb=" CB  ILE A  77 "
        model="   1" pdb=" CG2 ILE A  77 "
      ideal   model   delta    sigma   weight residual
     110.50  119.77   -9.27 1.70e+00 3.46e-01 2.97e+01
  angle model="   1" pdb=" CA  ASP A  74 "
        model="   1" pdb=" CB  ASP A  74 "
        model="   1" pdb=" CG  ASP A  74 "
      ideal   model   delta    sigma   weight residual
     112.60  117.81   -5.21 1.00e+00 1.00e+00 2.71e+01
  angle model="   1" pdb=" CA  LEU A  53 "
        model="   1" pdb=" C   LEU A  53 "
        model="   1" pdb=" N   PRO A  54 "
      ideal   model   delta    sigma   weight residual
     116.90  124.56   -7.66 1.50e+00 4.44e-01 2.61e+01
  angle model="   1" pdb=" CA  LYS A 101 "
        model="   1" pdb=" C   LYS A 101 "
        model="   1" pdb=" N   PRO A 102 "
      ideal   model   delta    sigma   weight residual
     116.90  124.52   -7.62 1.50e+00 4.44e-01 2.58e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    13.10: 958
       13.10 -    26.19: 52
       26.19 -    39.29: 14
       39.29 -    52.39: 7
       52.39 -    65.49: 1
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" CA  ILE A 122 "
           model="   1" pdb=" C   ILE A 122 "
           model="   1" pdb=" N   GLU A 123 "
           model="   1" pdb=" CA  GLU A 123 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  138.82   41.18     0      5.00e+00 4.00e-02 6.78e+01
  dihedral model="   1" pdb=" CA  HIS A 137 "
           model="   1" pdb=" C   HIS A 137 "
           model="   1" pdb=" N   HIS A 138 "
           model="   1" pdb=" CA  HIS A 138 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  140.24   39.76     0      5.00e+00 4.00e-02 6.32e+01
  dihedral model="   1" pdb=" CA  ILE A  51 "
           model="   1" pdb=" C   ILE A  51 "
           model="   1" pdb=" N   PRO A  52 "
           model="   1" pdb=" CA  PRO A  52 "
      ideal   model   delta  harmonic     sigma   weight residual
    -180.00 -146.56  -33.44     0      5.00e+00 4.00e-02 4.47e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.001 -    0.110: 131
       0.110 -    0.218: 34
       0.218 -    0.327: 7
       0.327 -    0.436: 3
       0.436 -    0.544: 1
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  PRO A  52 "
            model="   1" pdb=" N   PRO A  52 "
            model="   1" pdb=" C   PRO A  52 "
            model="   1" pdb=" CB  PRO A  52 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.72    2.17    0.54 2.00e-01 2.50e+01 7.41e+00
  chirality model="   1" pdb=" CA  ILE A 122 "
            model="   1" pdb=" N   ILE A 122 "
            model="   1" pdb=" C   ILE A 122 "
            model="   1" pdb=" CB  ILE A 122 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.43    2.00    0.43 2.00e-01 2.50e+01 4.72e+00
  chirality model="   1" pdb=" CB  ILE A  77 "
            model="   1" pdb=" CA  ILE A  77 "
            model="   1" pdb=" CG1 ILE A  77 "
            model="   1" pdb=" CG2 ILE A  77 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.64    2.22    0.42 2.00e-01 2.50e+01 4.50e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  12 "    0.089 2.00e-02 2.50e+03   4.43e-02 5.90e+01
        model="   1" pdb=" CG  TYR A  12 "    0.010 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  12 "   -0.011 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  12 "   -0.022 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  12 "   -0.022 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  12 "   -0.010 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  12 "    0.011 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  12 "    0.092 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  12 "   -0.017 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  12 "   -0.052 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  12 "   -0.050 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  12 "   -0.016 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  68 "   -0.009 2.00e-02 2.50e+03   4.01e-02 4.83e+01
        model="   1" pdb=" CG  TYR A  68 "   -0.024 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  68 "    0.023 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  68 "   -0.018 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  68 "   -0.026 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  68 "    0.016 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  68 "   -0.005 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  68 "    0.014 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  68 "    0.086 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  68 "   -0.037 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  68 "   -0.073 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  68 "    0.051 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  PHE A  45 "   -0.070 2.00e-02 2.50e+03   3.64e-02 3.98e+01
        model="   1" pdb=" CG  PHE A  45 "   -0.026 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 PHE A  45 "    0.008 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 PHE A  45 "    0.023 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 PHE A  45 "    0.011 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 PHE A  45 "   -0.004 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  PHE A  45 "   -0.017 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 PHE A  45 "    0.029 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 PHE A  45 "    0.074 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 PHE A  45 "    0.031 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 PHE A  45 "   -0.013 2.00e-02 2.50e+03
        model="   1" pdb=" HZ  PHE A  45 "   -0.044 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.76 -     2.33: 399
        2.33 -     2.90: 508
  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 0.99
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 1.12 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

7
        2.90 -     3.46: 4814
        3.46 -     4.03: 6204
        4.03 -     4.60: 9280
  Nonbonded interactions: 25784
  Sorted by model distance:
  nonbonded model="   1" pdb=" OE1 GLU A  16 "
            model="   1" pdb=" HZ2 LYS A  19 "
     model   vdw
     1.759 1.850
  nonbonded model="   1" pdb=" OE1 GLU A  49 "
            model="   1" pdb=" H   GLU A  49 "
     model   vdw
     1.809 1.850
  nonbonded model="   1" pdb=" H   LEU A   2 "
            model="   1" pdb=" HG  LEU A   2 "
     model   vdw
     1.821 2.270
  nonbonded model="   1" pdb=" HG1 THR A  83 "
            model="   1" pdb=" OG  SER A  90 "
     model   vdw
     1.889 1.850
  nonbonded model="   1" pdb=" H   LEU A 119 "
            model="   1" pdb=" H   GLU A 120 "
     model   vdw
     1.922 2.100
  ... (remaining 25779 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.
  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 134
        1.23 -     1.43: 339
        1.43 -     1.63: 658
        1.63 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" CD  ARG A  58 "
       model="   1" pdb=" NE  ARG A  58 "
    ideal  model  delta    sigma   weight residual
    1.458  1.513 -0.055 1.40e-02 5.10e+03 1.56e+01
  bond model="   1" pdb=" C   ILE A  30 "
       model="   1" pdb=" N   LEU A  31 "
    ideal  model  delta    sigma   weight residual
    1.329  1.381 -0.052 1.40e-02 5.10e+03 1.36e+01
  bond model="   1" pdb=" CE1 HIS A 137 "
       model="   1" pdb=" NE2 HIS A 137 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.14e+01
  bond model="   1" pdb=" CE1 HIS A  43 "
       model="   1" pdb=" NE2 HIS A  43 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.13e+01
  bond model="   1" pdb=" CE1 HIS A 136 "
       model="   1" pdb=" NE2 HIS A 136 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.13e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       97.17 -   103.97: 47
      103.97 -   110.76: 2242
      110.76 -   117.56: 786
      117.56 -   124.35: 898
      124.35 -   131.15: 104
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" CA  ILE A  51 "
        model="   1" pdb=" C   ILE A  51 "
        model="   1" pdb=" N   PRO A  52 "
      ideal   model   delta    sigma   weight residual
     116.90  129.70  -12.80 1.50e+00 4.44e-01 7.28e+01
  angle model="   1" pdb=" CA  LYS A 101 "
        model="   1" pdb=" C   LYS A 101 "
        model="   1" pdb=" N   PRO A 102 "
      ideal   model   delta    sigma   weight residual
     116.90  128.78  -11.88 1.50e+00 4.44e-01 6.28e+01
  angle model="   1" pdb=" N   ASP A 110 "
        model="   1" pdb=" CA  ASP A 110 "
        model="   1" pdb=" CB  ASP A 110 "
      ideal   model   delta    sigma   weight residual
     110.50   98.29   12.21 1.70e+00 3.46e-01 5.15e+01
  angle model="   1" pdb=" CA  THR A  83 "
        model="   1" pdb=" CB  THR A  83 "
        model="   1" pdb=" CG2 THR A  83 "
      ideal   model   delta    sigma   weight residual
     110.50  122.19  -11.69 1.70e+00 3.46e-01 4.73e+01
  angle model="   1" pdb=" CA  LYS A 113 "
        model="   1" pdb=" C   LYS A 113 "
        model="   1" pdb=" N   PRO A 114 "
      ideal   model   delta    sigma   weight residual
     116.90  125.34   -8.44 1.50e+00 4.44e-01 3.16e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    16.74: 980
       16.74 -    33.49: 32
       33.49 -    50.23: 11
       50.23 -    66.97: 8
       66.97 -    83.71: 1
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" CA  TYR A 111 "
           model="   1" pdb=" C   TYR A 111 "
           model="   1" pdb=" N   VAL A 112 "
           model="   1" pdb=" CA  VAL A 112 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  143.24   36.76     0      5.00e+00 4.00e-02 5.41e+01
  dihedral model="   1" pdb=" C   VAL A  14 "
           model="   1" pdb=" N   VAL A  14 "
           model="   1" pdb=" CA  VAL A  14 "
           model="   1" pdb=" CB  VAL A  14 "
      ideal   model   delta  harmonic     sigma   weight residual
    -122.00 -138.59   16.59     0      2.50e+00 1.60e-01 4.41e+01
  dihedral model="   1" pdb=" N   VAL A  14 "
           model="   1" pdb=" C   VAL A  14 "
           model="   1" pdb=" CA  VAL A  14 "
           model="   1" pdb=" CB  VAL A  14 "
      ideal   model   delta  harmonic     sigma   weight residual
     123.40  139.73  -16.33     0      2.50e+00 1.60e-01 4.27e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.002 -    0.114: 136
       0.114 -    0.226: 31
       0.226 -    0.337: 4
       0.337 -    0.449: 2
       0.449 -    0.561: 3
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  VAL A  14 "
            model="   1" pdb=" N   VAL A  14 "
            model="   1" pdb=" C   VAL A  14 "
            model="   1" pdb=" CB  VAL A  14 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.44    1.88    0.56 2.00e-01 2.50e+01 7.86e+00
  chirality model="   1" pdb=" CA  THR A  83 "
            model="   1" pdb=" N   THR A  83 "
            model="   1" pdb=" C   THR A  83 "
            model="   1" pdb=" CB  THR A  83 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.53    2.03    0.50 2.00e-01 2.50e+01 6.15e+00
  chirality model="   1" pdb=" CA  SER A  98 "
            model="   1" pdb=" N   SER A  98 "
            model="   1" pdb=" C   SER A  98 "
            model="   1" pdb=" CB  SER A  98 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.03    0.48 2.00e-01 2.50e+01 5.82e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  12 "    0.082 2.00e-02 2.50e+03   6.98e-02 1.46e+02
        model="   1" pdb=" CG  TYR A  12 "    0.038 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  12 "    0.011 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  12 "   -0.031 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  12 "   -0.050 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  12 "   -0.008 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  12 "    0.012 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  12 "    0.140 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  12 "    0.034 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  12 "   -0.093 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  12 "   -0.131 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  12 "   -0.006 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  PHE A  45 "   -0.052 2.00e-02 2.50e+03   5.77e-02 9.99e+01
        model="   1" pdb=" CG  PHE A  45 "   -0.041 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 PHE A  45 "    0.014 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 PHE A  45 "   -0.003 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 PHE A  45 "    0.015 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 PHE A  45 "    0.032 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  PHE A  45 "   -0.041 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 PHE A  45 "    0.050 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 PHE A  45 "   -0.000 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 PHE A  45 "    0.052 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 PHE A  45 "    0.104 2.00e-02 2.50e+03
        model="   1" pdb=" HZ  PHE A  45 "   -0.128 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A 111 "   -0.120 2.00e-02 2.50e+03   5.70e-02 9.76e+01
        model="   1" pdb=" CG  TYR A 111 "    0.015 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A 111 "    0.043 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A 111 "    0.023 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A 111 "   -0.028 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A 111 "   -0.007 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A 111 "   -0.058 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A 111 "    0.023 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A 111 "    0.110 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A 111 "    0.048 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A 111 "   -0.055 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A 111 "    0.007 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.71 -     2.29: 328
        2.29 -     2.87: 49  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 126
        1.23 -     1.43: 344
        1.43 -     1.63: 661
        1.63 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" CE1 HIS A 138 "
       model="   1" pdb=" NE2 HIS A 138 "
    ideal  model  delta    sigma   weight residual
    1.321  1.357 -0.036 1.00e-02 1.00e+04 1.26e+01
  bond model="   1" pdb=" CE1 HIS A 136 "
       model="   1" pdb=" NE2 HIS A 136 "
    ideal  model  delta    sigma   weight residual
    1.321  1.356 -0.035 1.00e-02 1.00e+04 1.22e+01
  bond model="   1" pdb=" CE1 HIS A 137 "
       model="   1" pdb=" NE2 HIS A 137 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.18e+01
  bond model="   1" pdb=" CE1 HIS A 134 "
       model="   1" pdb=" NE2 HIS A 134 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.14e+01
  bond model="   1" pdb=" CD  ARG A  21 "
       model="   1" pdb=" NE  ARG A  21 "
    ideal  model  delta    sigma   weight residual
    1.458  1.504 -0.046 1.40e-02 5.10e+03 1.09e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       97.23 -   104.41: 60
      104.41 -   111.60: 2401
      111.60 -   118.78: 728
      118.78 -   125.96: 846
      125.96 -   133.15: 42
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" C   HIS A 135 "
        model="   1" pdb=" N   HIS A 136 "
        model="   1" pdb=" CA  HIS A 136 "
      ideal   model   delta    sigma   weight residual
     121.70  133.15  -11.45 1.80e+00 3.09e-01 4.04e+01
  angle model="   1" pdb=" C   SER A  13 "
        model="   1" pdb=" N   VAL A  14 "
        model="   1" pdb=" CA  VAL A  14 "
      ideal   model   delta    sigma   weight residual
     121.70  132.70  -11.00 1.80e+00 3.09e-01 3.73e+01
  angle model="   1" pdb=" O   HIS A 135 "
        model="   1" pdb=" C   HIS A 135 "
        model="   1" pdb=" N   HIS A 136 "
      ideal   model   delta    sigma   weight residual
     123.00  113.54    9.46 1.60e+00 3.91e-01 3.49e+01
  angle model="   1" pdb=" N   HIS A 139 "
        model="   1" pdb=" CA  HIS A 139 "
        model="   1" pdb=" CB  HIS A 139 "
      ideal   model   delta    sigma   weight residual
     110.50  119.41   -8.91 1.70e+00 3.46e-01 2.75e+01
  angle model="   1" pdb=" C   SER A 130 "
        model="   1" pdb=" N   ILE A 131 "
        model="   1" pdb=" CA  ILE A 131 "
      ideal   model   delta    sigma   weight residual
     121.70  130.16   -8.46 1.80e+00 3.09e-01 2.21e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    26.58: 1006
       26.58 -    53.15: 20
       53.15 -    79.73: 4
       79.73 -   106.30: 0
      106.30 -   132.88: 2
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" CA  HIS A 135 "
           model="   1" pdb=" C   HIS A 135 "
           model="   1" pdb=" N   HIS A 136 "
           model="   1" pdb=" CA  HIS A 136 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00   47.12  132.88     0      5.00e+00 4.00e-02 7.06e+02
  dihedral model="   1" pdb=" CA  SER A 130 "
           model="   1" pdb=" C   SER A 130 "
           model="   1" pdb=" N   ILE A 131 "
           model="   1" pdb=" CA  ILE A 131 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00   69.66  110.34     0      5.00e+00 4.00e-02 4.87e+02
  dihedral model="   1" pdb=" CA  HIS A 138 "
           model="   1" pdb=" C   HIS A 138 "
           model="   1" pdb=" N   HIS A 139 "
           model="   1" pdb=" CA  HIS A 139 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  123.81   56.19     0      5.00e+00 4.00e-02 1.26e+02
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.000 -    0.126: 136
       0.126 -    0.252: 29
       0.252 -    0.378: 8
       0.378 -    0.504: 2
      86
        2.87 -     3.44: 5099
        3.44 -     4.02: 6531
        4.02 -     4.60: 9898
  Nonbonded interactions: 26842
  Sorted by model distance:
  nonbonded model="   1" pdb=" HZ1 LYS A  10 "
            model="   1" pdb=" OD1 ASP A  23 "
     model   vdw
     1.709 1.850
  nonbonded model="   1" pdb="HG23 VAL A  41 "
            model="   1" pdb=" H   HIS A  43 "
     model   vdw
     1.759 2.270
  nonbonded model="   1" pdb=" H   THR A   5 "
            model="   1" pdb=" OE2 GLU A   8 "
     model   vdw
     1.853 1.850
  nonbonded model="   1" pdb="HH12 ARG A  21 "
            model="   1" pdb="HE22 GLN A  66 "
     model   vdw
     1.870 2.100
  nonbonded model="   1" pdb=" HB2 LEU A   3 "
            model="   1" pdb="HD22 LEU A  61 "
     model   vdw
     1.885 2.440
  ... (remaining 26837 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.
 0.504 -    0.630: 1
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  SER A 130 "
            model="   1" pdb=" N   SER A 130 "
            model="   1" pdb=" C   SER A 130 "
            model="   1" pdb=" CB  SER A 130 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    1.88    0.63 2.00e-01 2.50e+01 9.93e+00
  chirality model="   1" pdb=" CA  GLU A 133 "
            model="   1" pdb=" N   GLU A 133 "
            model="   1" pdb=" C   GLU A 133 "
            model="   1" pdb=" CB  GLU A 133 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.06    0.45 2.00e-01 2.50e+01 5.06e+00
  chirality model="   1" pdb=" CA  PRO A 114 "
            model="   1" pdb=" N   PRO A 114 "
            model="   1" pdb=" C   PRO A 114 "
            model="   1" pdb=" CB  PRO A 114 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.72    2.32    0.40 2.00e-01 2.50e+01 3.93e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  12 "   -0.076 2.00e-02 2.50e+03   6.42e-02 1.24e+02
        model="   1" pdb=" CG  TYR A  12 "    0.072 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  12 "   -0.006 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  12 "    0.053 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  12 "    0.026 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  12 "   -0.033 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  12 "    0.010 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  12 "   -0.001 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  12 "   -0.080 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  12 "    0.098 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  12 "    0.058 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  12 "   -0.120 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  PHE A  67 "    0.123 2.00e-02 2.50e+03   5.11e-02 7.84e+01
        model="   1" pdb=" CG  PHE A  67 "    0.006 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 PHE A  67 "   -0.027 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 PHE A  67 "   -0.031 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 PHE A  67 "   -0.005 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 PHE A  67 "   -0.002 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  PHE A  67 "    0.025 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 PHE A  67 "   -0.065 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 PHE A  67 "   -0.075 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 PHE A  67 "   -0.009 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 PHE A  67 "   -0.003 2.00e-02 2.50e+03
        model="   1" pdb=" HZ  PHE A  67 "    0.063 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  PHE A  45 "    0.091 2.00e-02 2.50e+03   4.05e-02 4.92e+01
        model="   1" pdb=" CG  PHE A  45 "    0.009 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 PHE A  45 "   -0.021 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 PHE A  45 "   -0.020 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 PHE A  45 "   -0.006 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 PHE A  45 "   -0.007 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  PHE A  45 "    0.024 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 PHE A  45 "   -0.051 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 PHE A  45 "   -0.048 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 PHE A  45 "   -0.017 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 PHE A  45 "   -0.020 2.00e-02 2.50e+03
        model="   1" pdb=" HZ  PHE A  45 "    0.065 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.59 -     2.19: 114
        2.19 -     2.79: 429  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 90
        1.23 -     1.43: 375
        1.43 -     1.62: 666
        1.62 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" CD  ARG A  21 "
       model="   1" pdb=" NE  ARG A  21 "
    ideal  model  delta    sigma   weight residual
    1.458  1.515 -0.057 1.40e-02 5.10e+03 1.65e+01
  bond model="   1" pdb=" CD  ARG A 127 "
       model="   1" pdb=" NE  ARG A 127 "
    ideal  model  delta    sigma   weight residual
    1.458  1.506 -0.048 1.40e-02 5.10e+03 1.19e+01
  bond model="   1" pdb=" CE1 HIS A  43 "
       model="   1" pdb=" NE2 HIS A  43 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.17e+01
  bond model="   1" pdb=" CE1 HIS A 137 "
       model="   1" pdb=" NE2 HIS A 137 "
    ideal  model  delta    sigma   weight residual
    1.321  1.352 -0.031 1.00e-02 1.00e+04 9.57e+00
  bond model="   1" pdb=" CE1 HIS A 136 "
       model="   1" pdb=" NE2 HIS A 136 "
    ideal  model  delta    sigma   weight residual
    1.321  1.351 -0.030 1.00e-02 1.00e+04 9.21e+00
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       95.02 -   102.96: 17
      102.96 -   110.90: 2297
      110.90 -   118.84: 877
      118.84 -   126.78: 859
      126.78 -   134.72: 27
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" C   HIS A 135 "
        model="   1" pdb=" N   HIS A 136 "
        model="   1" pdb=" CA  HIS A 136 "
      ideal   model   delta    sigma   weight residual
     121.70  134.72  -13.02 1.80e+00 3.09e-01 5.23e+01
  angle model="   1" pdb=" C   HIS A 135 "
        model="   1" pdb=" CA  HIS A 135 "
        model="   1" pdb=" CB  HIS A 135 "
      ideal   model   delta    sigma   weight residual
     110.10  121.31  -11.21 1.90e+00 2.77e-01 3.48e+01
  angle model="   1" pdb=" CA  HIS A 137 "
        model="   1" pdb=" CB  HIS A 137 "
        model="   1" pdb=" CG  HIS A 137 "
      ideal   model   delta    sigma   weight residual
     113.80  119.42   -5.62 1.00e+00 1.00e+00 3.16e+01
  angle model="   1" pdb=" CA  ASP A 116 "
        model="   1" pdb=" C   ASP A 116 "
        model="   1" pdb=" N   PRO A 117 "
      ideal   model   delta    sigma   weight residual
     116.90  124.92   -8.02 1.50e+00 4.44e-01 2.86e+01
  angle model="   1" pdb=" O   HIS A 135 "
        model="   1" pdb=" C   HIS A 135 "
        model="   1" pdb=" N   HIS A 136 "
      ideal   model   delta    sigma   weight residual
     123.00  114.62    8.38 1.60e+00 3.91e-01 2.74e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    15.40: 976
       15.40 -    30.80: 37
       30.80 -    46.20: 12
       46.20 -    61.61: 3
       61.61 -    77.01: 4
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" CA  HIS A 138 "
           model="   1" pdb=" C   HIS A 138 "
           model="   1" pdb=" N   HIS A 139 "
           model="   1" pdb=" CA  HIS A 139 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  102.99   77.01     0      5.00e+00 4.00e-02 2.37e+02
  dihedral model="   1" pdb=" CA  HIS A 137 "
           model="   1" pdb=" C   HIS A 137 "
           model="   1" pdb=" N   HIS A 138 "
           model="   1" pdb=" CA  HIS A 138 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  115.32   64.68     0      5.00e+00 4.00e-02 1.67e+02
  dihedral model="   1" pdb=" CA  GLY A 121 "
           model="   1" pdb=" C   GLY A 121 "
           model="   1" pdb=" N   ILE A 122 "
           model="   1" pdb=" CA  ILE A 122 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  144.09   35.91     0      5.00e+00 4.00e-02 5.16e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.000 -    0.086: 117
       0.086 -    0.172: 48
       0.172 -    0.257: 7
       0.257 -    0.343: 3
       3
        2.79 -     3.40: 5547
        3.40 -     4.00: 6510
        4.00 -     4.60: 9947
  Nonbonded interactions: 26411
  Sorted by model distance:
  nonbonded model="   1" pdb=" H   VAL A  14 "
            model="   1" pdb=" H   PHE A  15 "
     model   vdw
     1.589 2.100
  nonbonded model="   1" pdb=" OE2 GLU A  55 "
            model="   1" pdb="HH21 ARG A  58 "
     model   vdw
     1.719 1.850
  nonbonded model="   1" pdb=" OE1 GLU A  55 "
            model="   1" pdb=" HE  ARG A  58 "
     model   vdw
     1.743 1.850
  nonbonded model="   1" pdb=" O   TYR A  12 "
            model="   1" pdb=" H   VAL A  14 "
     model   vdw
     1.773 1.850
  nonbonded model="   1" pdb="HG13 VAL A  18 "
            model="   1" pdb="HD22 LEU A  26 "
     model   vdw
     1.858 2.440
  ... (remaining 26406 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 1.01
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 1.14 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

0.343 -    0.428: 1
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  HIS A 137 "
            model="   1" pdb=" N   HIS A 137 "
            model="   1" pdb=" C   HIS A 137 "
            model="   1" pdb=" CB  HIS A 137 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.08    0.43 2.00e-01 2.50e+01 4.59e+00
  chirality model="   1" pdb=" CA  ILE A  78 "
            model="   1" pdb=" N   ILE A  78 "
            model="   1" pdb=" C   ILE A  78 "
            model="   1" pdb=" CB  ILE A  78 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.43    2.10    0.33 2.00e-01 2.50e+01 2.80e+00
  chirality model="   1" pdb=" CA  HIS A 138 "
            model="   1" pdb=" N   HIS A 138 "
            model="   1" pdb=" C   HIS A 138 "
            model="   1" pdb=" CB  HIS A 138 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.22    0.29 2.00e-01 2.50e+01 2.13e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A 111 "   -0.201 2.00e-02 2.50e+03   8.24e-02 2.04e+02
        model="   1" pdb=" CG  TYR A 111 "   -0.013 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A 111 "    0.044 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A 111 "    0.046 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A 111 "    0.006 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A 111 "    0.005 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A 111 "   -0.059 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A 111 "   -0.092 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A 111 "    0.109 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A 111 "    0.111 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A 111 "    0.023 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A 111 "    0.020 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  68 "   -0.075 2.00e-02 2.50e+03   4.92e-02 7.27e+01
        model="   1" pdb=" CG  TYR A  68 "   -0.028 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  68 "    0.033 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  68 "    0.002 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  68 "   -0.025 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  68 "    0.007 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  68 "   -0.057 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  68 "   -0.000 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  68 "    0.113 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  68 "    0.019 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  68 "   -0.042 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  68 "    0.053 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  12 "   -0.055 2.00e-02 2.50e+03   4.72e-02 6.69e+01
        model="   1" pdb=" CG  TYR A  12 "    0.005 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  12 "    0.023 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  12 "   -0.007 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  12 "    0.005 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  12 "    0.037 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  12 "    0.007 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  12 "   -0.098 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  12 "    0.048 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  12 "   -0.046 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  12 "   -0.007 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  12 "    0.088 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.69 -     2.27: 247
        2.27 -     2.85: 4943
        2.85 -     3.44: 5203
        3.44 -     4.02: 6607
        4.02 -     4.60: 10002
  Nonbonded interactions: 27002
  Sorted by model distance:
  nonbonded model="   1" pdb=" OE2 GLU A  16 "
            model="   1" pdb=" HZ2 LYS A  19 "
     model   vdw
     1.692 1.850
  nonbonded model="   1" pdb=" HZ1 LYS A  10 "
            model="   1" pdb=" OD1 ASP A  23 "
     model   vdw
     1.755 1.850
  nonbonded model="   1" pdb="HE21 GLN A  28 "
            model="   1" pdb=" OE2 GLU A  32 "
     model   vdw
     1.848 1.850
  nonbonded model="   1" pdb=" O   GLU A  84 "
            model="   1" pdb=" H   TYR A  91 "
     model   vdw
     1.914 1.850
  nonbonded model="   1" pdb=" O   PRO A 102 "
            model="   1" pdb=" H   ALA A 106 "
     model   vdw
     1.932 1.850
  ... (remaining 26997 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.
  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 121
        1.23 -     1.43: 344
        1.43 -     1.62: 666
        1.62 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" CE1 HIS A 135 "
       model="   1" pdb=" NE2 HIS A 135 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.17e+01
  bond model="   1" pdb=" CE1 HIS A 138 "
       model="   1" pdb=" NE2 HIS A 138 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.16e+01
  bond model="   1" pdb=" CE1 HIS A 139 "
       model="   1" pdb=" NE2 HIS A 139 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.15e+01
  bond model="   1" pdb=" CE1 HIS A 136 "
       model="   1" pdb=" NE2 HIS A 136 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.15e+01
  bond model="   1" pdb=" CE1 HIS A 134 "
       model="   1" pdb=" NE2 HIS A 134 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.14e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       96.82 -   103.71: 34
      103.71 -   110.60: 2207
      110.60 -   117.49: 852
      117.49 -   124.38: 895
      124.38 -   131.27: 89
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" CA  ASP A  88 "
        model="   1" pdb=" CB  ASP A  88 "
        model="   1" pdb=" CG  ASP A  88 "
      ideal   model   delta    sigma   weight residual
     112.60  104.36    8.24 1.00e+00 1.00e+00 6.78e+01
  angle model="   1" pdb=" CA  ASP A 116 "
        model="   1" pdb=" C   ASP A 116 "
        model="   1" pdb=" N   PRO A 117 "
      ideal   model   delta    sigma   weight residual
     116.90  126.02   -9.12 1.50e+00 4.44e-01 3.70e+01
  angle model="   1" pdb=" CA  LYS A 101 "
        model="   1" pdb=" C   LYS A 101 "
        model="   1" pdb=" N   PRO A 102 "
      ideal   model   delta    sigma   weight residual
     116.90  124.86   -7.96 1.50e+00 4.44e-01 2.81e+01
  angle model="   1" pdb=" CA  THR A   5 "
        model="   1" pdb=" C   THR A   5 "
        model="   1" pdb=" N   PRO A   6 "
      ideal   model   delta    sigma   weight residual
     116.90  123.98   -7.08 1.50e+00 4.44e-01 2.23e+01
  angle model="   1" pdb=" C   ALA A 115 "
        model="   1" pdb=" CA  ALA A 115 "
        model="   1" pdb=" CB  ALA A 115 "
      ideal   model   delta    sigma   weight residual
     110.50  103.53    6.97 1.50e+00 4.44e-01 2.16e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    12.00: 943
       12.00 -    24.00: 59
       24.00 -    35.99: 17
       35.99 -    47.99: 7
       47.99 -    59.99: 6
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" CA  ILE A 122 "
           model="   1" pdb=" C   ILE A 122 "
           model="   1" pdb=" N   GLU A 123 "
           model="   1" pdb=" CA  GLU A 123 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  148.69   31.31     0      5.00e+00 4.00e-02 3.92e+01
  dihedral model="   1" pdb=" CA  TYR A  91 "
           model="   1" pdb=" C   TYR A  91 "
           model="   1" pdb=" N   THR A  92 "
           model="   1" pdb=" CA  THR A  92 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  154.32   25.68     0      5.00e+00 4.00e-02 2.64e+01
  dihedral model="   1" pdb=" N   LYS A 113 "
           model="   1" pdb=" C   LYS A 113 "
           model="   1" pdb=" CA  LYS A 113 "
           model="   1" pdb=" CB  LYS A 113 "
      ideal   model   delta  harmonic     sigma   weight residual
     122.80  132.78   -9.98     0      2.50e+00 1.60e-01 1.59e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.000 -    0.072: 101
       0.072 -    0.144: 47
       0.144 -    0.216: 14
       0.216 -    0.287: 9
       0.287 -    0.359: 5
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  LYS A 113 "
            model="   1" pdb=" N   LYS A 113 "
            model="   1" pdb=" C   LYS A 113 "
            model="   1" pdb=" CB  LYS A 113 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.15    0.36 2.00e-01 2.50e+01 3.22e+00
  chirality model="   1" pdb=" CB  ILE A  78 "
            model="   1" pdb=" CA  ILE A  78 "
            model="   1" pdb=" CG1 ILE A  78 "
            model="   1" pdb=" CG2 ILE A  78 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.64    2.29    0.36 2.00e-01 2.50e+01 3.19e+00
  chirality model="   1" pdb=" CG  LEU A  26 "
            model="   1" pdb=" CB  LEU A  26 "
            model="   1" pdb=" CD1 LEU A  26 "
            model="   1" pdb=" CD2 LEU A  26 "
    both_signs  ideal   model   delta    sigma   weight residual
      False     -2.59   -2.27   -0.32 2.00e-01 2.50e+01 2.57e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  68 "    0.187 2.00e-02 2.50e+03   7.27e-02 1.59e+02
        model="   1" pdb=" CG  TYR A  68 "   -0.012 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  68 "   -0.039 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  68 "   -0.047 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  68 "   -0.009 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  68 "   -0.013 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  68 "    0.008 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  68 "    0.099 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  68 "   -0.077 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  68 "   -0.094 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  68 "   -0.000 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  68 "   -0.005 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  PHE A  15 "   -0.119 2.00e-02 2.50e+03   6.84e-02 1.41e+02
        model="   1" pdb=" CG  PHE A  15 "   -0.035 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 PHE A  15 "    0.006 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 PHE A  15 "    0.043 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 PHE A  15 "    0.030 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 PHE A  15 "   -0.005 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  PHE A  15 "   -0.038 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 PHE A  15 "    0.018 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 PHE A  15 "    0.128 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 PHE A  15 "    0.091 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 PHE A  15 "   -0.014 2.00e-02 2.50e+03
        model="   1" pdb=" HZ  PHE A  15 "   -0.106 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  81 "    0.081 2.00e-02 2.50e+03   6.71e-02 1.35e+02
        model="   1" pdb=" CG  TYR A  81 "    0.023 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  81 "    0.010 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  81 "   -0.050 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  81 "   -0.020 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  81 "    0.038 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  81 "    0.028 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  81 "   -0.003 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  81 "    0.020 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  81 "   -0.160 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  81 "   -0.071 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  81 "    0.104 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.74 -     2.31: 414
        2.31 -     2.88: 5133
        2.88 -     3.46: 5172
        3.46 -     4.03: 6463
        4.03 -     4.60: 9782
  Nonbonded interactions: 26964
  Sorted by model distance:
  nonbonded model="   1" pdb="HH22 ARG A  21 "
            model="   1" pdb=" HG  LEU A  62 "
     model   vdw
     1.740 2.270
  nonbonded model="   1" pdb=" HB3 LEU A   3 "
            model="   1" pdb="HG23 THR A  34 "
     model   vdw
     1.752 2.440
  nonbonded model="   1" pdb=" OD2 ASP A  95 "
            model="   1" pdb=" HZ1 LYS A 101 "
     model   vdw
     1.802 1.850
  nonbonded model="   1" pdb="HG22 ILE A  78 "
            model="   1" pdb=" H   GLY A  80 "
     model   vdw
     1.812 2.270
  nonbonded model="   1" pdb=" O   ILE A  78 "
            model="   1" pdb=" H   TYR A  81 "
     model   vdw
     1.851 1.850
  ... (remaining 26959 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.
  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 129
        1.23 -     1.43: 340
        1.43 -     1.63: 662
        1.63 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" CD  ARG A  21 "
       model="   1" pdb=" NE  ARG A  21 "
    ideal  model  delta    sigma   weight residual
    1.458  1.509 -0.051 1.40e-02 5.10e+03 1.30e+01
  bond model="   1" pdb=" C   PRO A 117 "
       model="   1" pdb=" N   ASP A 118 "
    ideal  model  delta    sigma   weight residual
    1.329  1.378 -0.049 1.40e-02 5.10e+03 1.21e+01
  bond model="   1" pdb=" CA  ASP A 116 "
       model="   1" pdb=" C   ASP A 116 "
    ideal  model  delta    sigma   weight residual
    1.525  1.597 -0.072 2.10e-02 2.27e+03 1.16e+01
  bond model="   1" pdb=" CE1 HIS A  43 "
       model="   1" pdb=" NE2 HIS A  43 "
    ideal  model  delta    sigma   weight residual
    1.321  1.354 -0.033 1.00e-02 1.00e+04 1.11e+01
  bond model="   1" pdb=" CE1 HIS A 136 "
       model="   1" pdb=" NE2 HIS A 136 "
    ideal  model  delta    sigma   weight residual
    1.321  1.354 -0.033 1.00e-02 1.00e+04 1.09e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       92.15 -    99.93: 6
       99.93 -   107.72: 551
      107.72 -   115.50: 2403
      115.50 -   123.29: 911
      123.29 -   131.07: 206
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" N   LEU A   3 "
        model="   1" pdb=" CA  LEU A   3 "
        model="   1" pdb=" CB  LEU A   3 "
      ideal   model   delta    sigma   weight residual
     110.50   98.41   12.09 1.70e+00 3.46e-01 5.06e+01
  angle model="   1" pdb=" N   PRO A 117 "
        model="   1" pdb=" CA  PRO A 117 "
        model="   1" pdb=" C   PRO A 117 "
      ideal   model   delta    sigma   weight residual
     112.10  128.71  -16.61 2.50e+00 1.60e-01 4.42e+01
  angle model="   1" pdb=" CA  ASP A 116 "
        model="   1" pdb=" CB  ASP A 116 "
        model="   1" pdb=" CG  ASP A 116 "
      ideal   model   delta    sigma   weight residual
     112.60  118.99   -6.39 1.00e+00 1.00e+00 4.08e+01
  angle model="   1" pdb=" C   PRO A 117 "
        model="   1" pdb=" CA  PRO A 117 "
        model="   1" pdb=" HA  PRO A 117 "
      ideal   model   delta    sigma   weight residual
     109.00   92.15   16.85 3.00e+00 1.11e-01 3.16e+01
  angle model="   1" pdb=" O   ASP A 116 "
        model="   1" pdb=" C   ASP A 116 "
        model="   1" pdb=" N   PRO A 117 "
      ideal   model   delta    sigma   weight residual
     123.00  114.78    8.22 1.60e+00 3.91e-01 2.64e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    13.97: 958
       13.97 -    27.94: 55
       27.94 -    41.91: 13
       41.91 -    55.88: 4
       55.88 -    69.85: 2
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" CA  SER A  90 "
           model="   1" pdb=" C   SER A  90 "
           model="   1" pdb=" N   TYR A  91 "
           model="   1" pdb=" CA  TYR A  91 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  143.00   37.00     0      5.00e+00 4.00e-02 5.48e+01
  dihedral model="   1" pdb=" CA  ASP A 116 "
           model="   1" pdb=" C   ASP A 116 "
           model="   1" pdb=" N   PRO A 117 "
           model="   1" pdb=" CA  PRO A 117 "
      ideal   model   delta  harmonic     sigma   weight residual
    -180.00 -146.26  -33.74     0      5.00e+00 4.00e-02 4.55e+01
  dihedral model="   1" pdb=" N   ILE A  51 "
           model="   1" pdb=" C   ILE A  51 "
           model="   1" pdb=" CA  ILE A  51 "
           model="   1" pdb=" CB  ILE A  51 "
      ideal   model   delta  harmonic     sigma   weight residual
     123.40  139.28  -15.88     0      2.50e+00 1.60e-01 4.03e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.001 -    0.135: 143
       0.135 -    0.269: 28
       0.269 -    0.404: 3
       0.404 -    0.538: 1
       0.538 -    0.673: 1
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  PRO A 117 "
            model="   1" pdb=" N   PRO A 117 "
            model="   1" pdb=" C   PRO A 117 "
            model="   1" pdb=" CB  PRO A 117 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.72    2.05    0.67 2.00e-01 2.50e+01 1.13e+01
  chirality model="   1" pdb=" CA  ILE A  51 "
            model="   1" pdb=" N   ILE A  51 "
            model="   1" pdb=" C   ILE A  51 "
            model="   1" pdb=" CB  ILE A  51 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.43    1.94    0.49 2.00e-01 2.50e+01 6.09e+00
  chirality model="   1" pdb=" CB  ILE A  51 "
            model="   1" pdb=" CA  ILE A  51 "
            model="   1" pdb=" CG1 ILE A  51 "
            model="   1" pdb=" CG2 ILE A  51 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.64    2.26    0.38 2.00e-01 2.50e+01 3.62e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  12 "    0.250 2.00e-02 2.50e+03   1.40e-01 5.85e+02
        model="   1" pdb=" CG  TYR A  12 "    0.031 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  12 "   -0.081 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  12 "   -0.008 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  12 "   -0.012 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  12 "   -0.083 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  12 "    0.034 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  12 "    0.265 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  12 "   -0.204 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  12 "    0.016 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  12 "    0.004 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  12 "   -0.209 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" C   ASP A 116 "   -0.110 5.00e-02 4.00e+02   1.64e-01 4.28e+01
        model="   1" pdb=" N   PRO A 117 "    0.283 5.00e-02 4.00e+02
        model="   1" pdb=" CA  PRO A 117 "   -0.092 5.00e-02 4.00e+02
        model="   1" pdb=" CD  PRO A 117 "   -0.081 5.00e-02 4.00e+02
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  68 "   -0.020 2.00e-02 2.50e+03   3.65e-02 3.99e+01
        model="   1" pdb=" CG  TYR A  68 "   -0.009 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  68 "    0.015 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  68 "   -0.014 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  68 "   -0.001 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  68 "    0.030 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  68 "    0.000 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  68 "   -0.062 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  68 "    0.041 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  68 "   -0.048 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  68 "   -0.012 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  68 "    0.079 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.75 -     2.32: 442
        2.32 -     2.89: 5102
        2.89 -     3.46: 5142
        3.46 -     4.03: 6427
        4.03 -     4.60: 9829
  Nonbonded interactions: 26942
  Sorted by model distance:
  nonbonded model="   1" pdb=" OE1 GLU A  16 "
            model="   1" pdb=" HZ2 LYS A  19 "
     model   vdw
     1.755 1.850
  nonbonded model="   1" pdb="HG22 ILE A 122 "
            model="   1" pdb=" H   ALA A 124 "
     model   vdw
     1.763 2.270
  nonbonded model="   1" pdb="HD22 LEU A   3 "
            model="   1" pdb="HD13 LEU A  53 "
     model   vdw
     1.806 2.440
  nonbonded model="   1" pdb=" OE1 GLU A 123 "
            model="   1" pdb=" H   GLU A 123 "
     model   vdw
     1.827 1.850
  nonbonded model="   1" pdb="HE22 GLN A  28 "
            model="   1" pdb=" HG3 LYS A  79 "
     model   vdw
     1.837 2.270
  ... (remaining 26937 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.
  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 100
        1.23 -     1.43: 366
        1.43 -     1.63: 665
        1.63 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" CD  ARG A  58 "
       model="   1" pdb=" NE  ARG A  58 "
    ideal  model  delta    sigma   weight residual
    1.458  1.511 -0.053 1.40e-02 5.10e+03 1.43e+01
  bond model="   1" pdb=" CD  ARG A 127 "
       model="   1" pdb=" NE  ARG A 127 "
    ideal  model  delta    sigma   weight residual
    1.458  1.503 -0.045 1.40e-02 5.10e+03 1.02e+01
  bond model="   1" pdb=" CD  ARG A 129 "
       model="   1" pdb=" NE  ARG A 129 "
    ideal  model  delta    sigma   weight residual
    1.458  1.502 -0.044 1.40e-02 5.10e+03 9.83e+00
  bond model="   1" pdb=" CE1 HIS A 139 "
       model="   1" pdb=" NE2 HIS A 139 "
    ideal  model  delta    sigma   weight residual
    1.321  1.352 -0.031 1.00e-02 1.00e+04 9.66e+00
  bond model="   1" pdb=" CE1 HIS A  43 "
       model="   1" pdb=" NE2 HIS A  43 "
    ideal  model  delta    sigma   weight residual
    1.321  1.351 -0.030 1.00e-02 1.00e+04 9.26e+00
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       96.39 -   103.26: 18
      103.26 -   110.13: 2126
      110.13 -   116.99: 910
      116.99 -   123.86: 869
      123.86 -   130.73: 154
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" CA  ASP A 116 "
        model="   1" pdb=" C   ASP A 116 "
        model="   1" pdb=" N   PRO A 117 "
      ideal   model   delta    sigma   weight residual
     116.90  125.92   -9.02 1.50e+00 4.44e-01 3.62e+01
  angle model="   1" pdb=" CA  LYS A 113 "
        model="   1" pdb=" C   LYS A 113 "
        model="   1" pdb=" N   PRO A 114 "
      ideal   model   delta    sigma   weight residual
     116.90  125.50   -8.60 1.50e+00 4.44e-01 3.29e+01
  angle model="   1" pdb=" CA  HIS A 139 "
        model="   1" pdb=" CB  HIS A 139 "
        model="   1" pdb=" CG  HIS A 139 "
      ideal   model   delta    sigma   weight residual
     113.80  118.92   -5.12 1.00e+00 1.00e+00 2.62e+01
  angle model="   1" pdb=" ND1 HIS A 134 "
        model="   1" pdb=" CG  HIS A 134 "
        model="   1" pdb=" CD2 HIS A 134 "
      ideal   model   delta    sigma   weight residual
     106.10  110.75   -4.65 1.00e+00 1.00e+00 2.16e+01
  angle model="   1" pdb=" O   ASP A 116 "
        model="   1" pdb=" C   ASP A 116 "
        model="   1" pdb=" N   PRO A 117 "
      ideal   model   delta    sigma   weight residual
     123.00  115.57    7.43 1.60e+00 3.91e-01 2.15e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    16.02: 969
       16.02 -    32.03: 41
       32.03 -    48.05: 14
       48.05 -    64.07: 6
       64.07 -    80.08: 2
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" CA  LEU A 132 "
           model="   1" pdb=" C   LEU A 132 "
           model="   1" pdb=" N   GLU A 133 "
           model="   1" pdb=" CA  GLU A 133 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00   99.92   80.08     0      5.00e+00 4.00e-02 2.57e+02
  dihedral model="   1" pdb=" CA  ILE A 131 "
           model="   1" pdb=" C   ILE A 131 "
           model="   1" pdb=" N   LEU A 132 "
           model="   1" pdb=" CA  LEU A 132 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  131.00   49.00     0      5.00e+00 4.00e-02 9.60e+01
  dihedral model="   1" pdb=" CA  SER A  76 "
           model="   1" pdb=" C   SER A  76 "
           model="   1" pdb=" N   ILE A  77 "
           model="   1" pdb=" CA  ILE A  77 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  143.76   36.24     0      5.00e+00 4.00e-02 5.25e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.000 -    0.103: 128
       0.103 -    0.206: 36
       0.206 -    0.309: 9
       0.309 -    0.412: 2
       0.412 -    0.515: 1
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  LEU A 132 "
            model="   1" pdb=" N   LEU A 132 "
            model="   1" pdb=" C   LEU A 132 "
            model="   1" pdb=" CB  LEU A 132 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.00    0.52 2.00e-01 2.50e+01 6.63e+00
  chirality model="   1" pdb=" CA  HIS A 139 "
            model="   1" pdb=" N   HIS A 139 "
            model="   1" pdb=" C   HIS A 139 "
            model="   1" pdb=" CB  HIS A 139 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.10    0.41 2.00e-01 2.50e+01 4.14e+00
  chirality model="   1" pdb=" CB  ILE A 131 "
            model="   1" pdb=" CA  ILE A 131 "
            model="   1" pdb=" CG1 ILE A 131 "
            model="   1" pdb=" CG2 ILE A 131 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.64    2.28    0.36 2.00e-01 2.50e+01 3.30e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  91 "    0.094 2.00e-02 2.50e+03   5.84e-02 1.02e+02
        model="   1" pdb=" CG  TYR A  91 "   -0.000 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  91 "   -0.047 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  91 "    0.002 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  91 "    0.028 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  91 "   -0.020 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  91 "    0.033 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  91 "    0.019 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  91 "   -0.129 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  91 "    0.017 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  91 "    0.074 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  91 "   -0.070 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  50 "    0.042 2.00e-02 2.50e+03   4.92e-02 7.27e+01
        model="   1" pdb=" CG  TYR A  50 "    0.005 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  50 "   -0.035 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  50 "    0.014 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  50 "    0.026 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  50 "   -0.024 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  50 "    0.003 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  50 "    0.010 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  50 "   -0.104 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  50 "    0.046 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  50 "    0.083 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  50 "   -0.068 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  PHE A  67 "   -0.018 2.00e-02 2.50e+03   4.59e-02 6.32e+01
        model="   1" pdb=" CG  PHE A  67 "   -0.030 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 PHE A  67 "    0.023 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 PHE A  67 "   -0.021 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 PHE A  67 "   -0.014 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 PHE A  67 "    0.030 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  PHE A  67 "   -0.015 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 PHE A  67 "    0.083 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 PHE A  67 "   -0.049 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 PHE A  67 "   -0.037 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 PHE A  67 "    0.094 2.00e-02 2.50e+03
        model="   1" pdb=" HZ  PHE A  67 "   -0.047 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.69 -     2.27: 237
        2.27 -     2.86: 4926
        2.86 -     3.44: 5110
        3.44 -     4.02: 6495
        4.02 -     4.60: 9485
  Nonbonded interactions: 26253
  Sorted by model distance:
  nonbonded model="   1" pdb=" OE2 GLU A  55 "
            model="   1" pdb="HH22 ARG A  58 "
     model   vdw
     1.692 1.850
  nonbonded model="   1" pdb=" HB2 LEU A   3 "
            model="   1" pdb="HD11 LEU A  61 "
     model   vdw
     1.782 2.440
  nonbonded model="   1" pdb=" OE2 GLU A  16 "
            model="   1" pdb=" HZ2 LYS A  19 "
     model   vdw
     1.791 1.850
  nonbonded model="   1" pdb="HE21 GLN A 100 "
            model="   1" pdb="HG12 VAL A 104 "
     model   vdw
     1.804 2.270
  nonbonded model="   1" pdb="HE21 GLN A  28 "
            model="   1" pdb=" OE2 GLU A  32 "
     model   vdw
     1.875 1.850
  ... (remaining 26248 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.
  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 132
        1.23 -     1.43: 334
        1.43 -     1.63: 665
        1.63 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" CE1 HIS A 139 "
       model="   1" pdb=" NE2 HIS A 139 "
    ideal  model  delta    sigma   weight residual
    1.321  1.356 -0.035 1.00e-02 1.00e+04 1.22e+01
  bond model="   1" pdb=" CE1 HIS A 136 "
       model="   1" pdb=" NE2 HIS A 136 "
    ideal  model  delta    sigma   weight residual
    1.321  1.356 -0.035 1.00e-02 1.00e+04 1.20e+01
  bond model="   1" pdb=" CE1 HIS A 135 "
       model="   1" pdb=" NE2 HIS A 135 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.18e+01
  bond model="   1" pdb=" CE1 HIS A  43 "
       model="   1" pdb=" NE2 HIS A  43 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.15e+01
  bond model="   1" pdb=" CD  ARG A 129 "
       model="   1" pdb=" NE  ARG A 129 "
    ideal  model  delta    sigma   weight residual
    1.458  1.505 -0.047 1.40e-02 5.10e+03 1.15e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       96.64 -   103.90: 46
      103.90 -   111.15: 2306
      111.15 -   118.40: 815
      118.40 -   125.66: 868
      125.66 -   132.91: 42
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" CA  ASP A 116 "
        model="   1" pdb=" C   ASP A 116 "
        model="   1" pdb=" N   PRO A 117 "
      ideal   model   delta    sigma   weight residual
     116.90  125.74   -8.84 1.50e+00 4.44e-01 3.47e+01
  angle model="   1" pdb=" C   GLU A  49 "
        model="   1" pdb=" N   TYR A  50 "
        model="   1" pdb=" CA  TYR A  50 "
      ideal   model   delta    sigma   weight residual
     121.70  132.07  -10.37 1.80e+00 3.09e-01 3.32e+01
  angle model="   1" pdb=" CB  ILE A  77 "
        model="   1" pdb=" CG1 ILE A  77 "
        model="   1" pdb=" CD1 ILE A  77 "
      ideal   model   delta    sigma   weight residual
     113.80  125.23  -11.43 2.10e+00 2.27e-01 2.96e+01
  angle model="   1" pdb=" O   GLU A  49 "
        model="   1" pdb=" C   GLU A  49 "
        model="   1" pdb=" N   TYR A  50 "
      ideal   model   delta    sigma   weight residual
     123.00  114.67    8.33 1.60e+00 3.91e-01 2.71e+01
  angle model="   1" pdb=" CA  ASP A  29 "
        model="   1" pdb=" CB  ASP A  29 "
        model="   1" pdb=" CG  ASP A  29 "
      ideal   model   delta    sigma   weight residual
     112.60  117.78   -5.18 1.00e+00 1.00e+00 2.69e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    12.58: 939
       12.58 -    25.17: 62
       25.17 -    37.75: 20
       37.75 -    50.33: 8
       50.33 -    62.92: 3
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" CA  PRO A 117 "
           model="   1" pdb=" C   PRO A 117 "
           model="   1" pdb=" N   ASP A 118 "
           model="   1" pdb=" CA  ASP A 118 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  145.92   34.08     0      5.00e+00 4.00e-02 4.64e+01
  dihedral model="   1" pdb=" CA  THR A  82 "
           model="   1" pdb=" C   THR A  82 "
           model="   1" pdb=" N   THR A  83 "
           model="   1" pdb=" CA  THR A  83 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  146.98   33.02     0      5.00e+00 4.00e-02 4.36e+01
  dihedral model="   1" pdb=" CA  GLU A  84 "
           model="   1" pdb=" C   GLU A  84 "
           model="   1" pdb=" N   LYS A  85 "
           model="   1" pdb=" CA  LYS A  85 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  150.73   29.27     0      5.00e+00 4.00e-02 3.43e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.000 -    0.100: 128
       0.100 -    0.200: 35
       0.200 -    0.300: 8
       0.300 -    0.399: 2
       0.399 -    0.499: 3
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  PHE A  15 "
            model="   1" pdb=" N   PHE A  15 "
            model="   1" pdb=" C   PHE A  15 "
            model="   1" pdb=" CB  PHE A  15 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.01    0.50 2.00e-01 2.50e+01 6.23e+00
  chirality model="   1" pdb=" CA  ILE A  77 "
            model="   1" pdb=" N   ILE A  77 "
            model="   1" pdb=" C   ILE A  77 "
            model="   1" pdb=" CB  ILE A  77 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.43    1.99    0.44 2.00e-01 2.50e+01 4.81e+00
  chirality model="   1" pdb=" CA  THR A  82 "
            model="   1" pdb=" N   THR A  82 "
            model="   1" pdb=" C   THR A  82 "
            model="   1" pdb=" CB  THR A  82 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.53    2.13    0.40 2.00e-01 2.50e+01 4.01e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A 111 "   -0.137 2.00e-02 2.50e+03   5.54e-02 9.22e+01
        model="   1" pdb=" CG  TYR A 111 "    0.013 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A 111 "    0.041 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A 111 "    0.024 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A 111 "   -0.005 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A 111 "    0.015 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A 111 "   -0.017 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A 111 "   -0.064 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A 111 "    0.089 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A 111 "    0.036 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A 111 "   -0.026 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A 111 "    0.032 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  68 "   -0.037 2.00e-02 2.50e+03   5.54e-02 9.21e+01
        model="   1" pdb=" CG  TYR A  68 "   -0.032 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  68 "    0.034 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  68 "   -0.020 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  68 "   -0.030 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  68 "    0.025 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  68 "   -0.036 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  68 "   -0.010 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  68 "    0.120 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  68 "   -0.042 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  68 "   -0.068 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  68 "    0.096 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A 105 "    0.105 2.00e-02 2.50e+03   4.29e-02 5.52e+01
        model="   1" pdb=" CG  TYR A 105 "   -0.003 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A 105 "   -0.020 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A 105 "   -0.028 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A 105 "   -0.009 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A 105 "   -0.001 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A 105 "    0.029 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A 105 "    0.056 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A 105 "   -0.037 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A 105 "   -0.061 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A 105 "   -0.028 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A 105 "   -0.003 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.68 -     2.26: 229
        2.26 -     2.85: 481  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 127
        1.23 -     1.43: 337
        1.43 -     1.62: 667
        1.62 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" C   ILE A  30 "
       model="   1" pdb=" N   LEU A  31 "
    ideal  model  delta    sigma   weight residual
    1.329  1.391 -0.062 1.40e-02 5.10e+03 1.94e+01
  bond model="   1" pdb=" N   ILE A  30 "
       model="   1" pdb=" CA  ILE A  30 "
    ideal  model  delta    sigma   weight residual
    1.458  1.378  0.080 1.90e-02 2.77e+03 1.76e+01
  bond model="   1" pdb=" CD  ARG A  58 "
       model="   1" pdb=" NE  ARG A  58 "
    ideal  model  delta    sigma   weight residual
    1.458  1.510 -0.052 1.40e-02 5.10e+03 1.39e+01
  bond model="   1" pdb=" CA  ILE A  30 "
       model="   1" pdb=" C   ILE A  30 "
    ideal  model  delta    sigma   weight residual
    1.525  1.600 -0.075 2.10e-02 2.27e+03 1.27e+01
  bond model="   1" pdb=" CD  ARG A  21 "
       model="   1" pdb=" NE  ARG A  21 "
    ideal  model  delta    sigma   weight residual
    1.458  1.507 -0.049 1.40e-02 5.10e+03 1.21e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       95.53 -   102.75: 21
      102.75 -   109.96: 2103
      109.96 -   117.18: 965
      117.18 -   124.40: 884
      124.40 -   131.62: 104
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" N   ILE A  30 "
        model="   1" pdb=" CA  ILE A  30 "
        model="   1" pdb=" CB  ILE A  30 "
      ideal   model   delta    sigma   weight residual
     111.50   97.10   14.40 1.70e+00 3.46e-01 7.17e+01
  angle model="   1" pdb=" CA  ASP A 116 "
        model="   1" pdb=" C   ASP A 116 "
        model="   1" pdb=" N   PRO A 117 "
      ideal   model   delta    sigma   weight residual
     116.90  128.44  -11.54 1.50e+00 4.44e-01 5.92e+01
  angle model="   1" pdb=" CA  ILE A  51 "
        model="   1" pdb=" C   ILE A  51 "
        model="   1" pdb=" N   PRO A  52 "
      ideal   model   delta    sigma   weight residual
     116.90  126.07   -9.17 1.50e+00 4.44e-01 3.74e+01
  angle model="   1" pdb=" CA  LEU A  53 "
        model="   1" pdb=" C   LEU A  53 "
        model="   1" pdb=" N   PRO A  54 "
      ideal   model   delta    sigma   weight residual
     116.90  125.28   -8.38 1.50e+00 4.44e-01 3.12e+01
  angle model="   1" pdb=" C   LEU A   3 "
        model="   1" pdb=" N   ILE A   4 "
        model="   1" pdb=" CA  ILE A   4 "
      ideal   model   delta    sigma   weight residual
     121.70  131.62   -9.92 1.80e+00 3.09e-01 3.04e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    16.01: 978
       16.01 -    32.02: 31
       32.02 -    48.03: 15
       48.03 -    64.03: 6
       64.03 -    80.04: 2
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" CA  PRO A  52 "
           model="   1" pdb=" C   PRO A  52 "
           model="   1" pdb=" N   LEU A  53 "
           model="   1" pdb=" CA  LEU A  53 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  150.39   29.61     0      5.00e+00 4.00e-02 3.51e+01
  dihedral model="   1" pdb=" CA  ARG A  21 "
           model="   1" pdb=" C   ARG A  21 "
           model="   1" pdb=" N   PRO A  22 "
           model="   1" pdb=" CA  PRO A  22 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  156.92   23.08     0      5.00e+00 4.00e-02 2.13e+01
  dihedral model="   1" pdb=" N   ILE A  30 "
           model="   1" pdb=" C   ILE A  30 "
           model="   1" pdb=" CA  ILE A  30 "
           model="   1" pdb=" CB  ILE A  30 "
      ideal   model   delta  harmonic     sigma   weight residual
     123.40  112.66   10.74     0      2.50e+00 1.60e-01 1.85e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.000 -    0.155: 155
       0.155 -    0.310: 18
       0.310 -    0.465: 2
       0.465 -    0.620: 0
       Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 132
        1.23 -     1.43: 339
        1.43 -     1.63: 660
        1.63 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" CD  ARG A  21 "
       model="   1" pdb=" NE  ARG A  21 "
    ideal  model  delta    sigma   weight residual
    1.458  1.509 -0.051 1.40e-02 5.10e+03 1.31e+01
  bond model="   1" pdb=" CE1 HIS A 135 "
       model="   1" pdb=" NE2 HIS A 135 "
    ideal  model  delta    sigma   weight residual
    1.321  1.356 -0.035 1.00e-02 1.00e+04 1.19e+01
  bond model="   1" pdb=" CE1 HIS A  43 "
       model="   1" pdb=" NE2 HIS A  43 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.15e+01
  bond model="   1" pdb=" CE1 HIS A 134 "
       model="   1" pdb=" NE2 HIS A 134 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.15e+01
  bond model="   1" pdb=" CE1 HIS A 139 "
       model="   1" pdb=" NE2 HIS A 139 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.15e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       96.99 -   103.98: 49
      103.98 -   110.98: 2279
      110.98 -   117.97: 799
      117.97 -   124.96: 873
      124.96 -   131.96: 77
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" CA  LYS A 101 "
        model="   1" pdb=" C   LYS A 101 "
        model="   1" pdb=" N   PRO A 102 "
      ideal   model   delta    sigma   weight residual
     116.90  126.33   -9.43 1.50e+00 4.44e-01 3.95e+01
  angle model="   1" pdb=" CD1 LEU A  61 "
        model="   1" pdb=" CG  LEU A  61 "
        model="   1" pdb=" CD2 LEU A  61 "
      ideal   model   delta    sigma   weight residual
     110.80   99.85   10.95 2.20e+00 2.07e-01 2.48e+01
  angle model="   1" pdb=" CA  GLU A 120 "
        model="   1" pdb=" C   GLU A 120 "
        model="   1" pdb=" N   GLY A 121 "
      ideal   model   delta    sigma   weight residual
     116.20  125.64   -9.44 2.00e+00 2.50e-01 2.23e+01
  angle model="   1" pdb=" ND1 HIS A 134 "
        model="   1" pdb=" CG  HIS A 134 "
        model="   1" pdb=" CD2 HIS A 134 "
      ideal   model   delta    sigma   weight residual
     106.10  110.79   -4.69 1.00e+00 1.00e+00 2.20e+01
  angle model="   1" pdb=" N   ASP A  95 "
        model="   1" pdb=" CA  ASP A  95 "
        model="   1" pdb=" CB  ASP A  95 "
      ideal   model   delta    sigma   weight residual
     110.50  118.45   -7.95 1.70e+00 3.46e-01 2.19e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    11.98: 920
       11.98 -    23.96: 82
       23.96 -    35.93: 18
       35.93 -    47.91: 8
       47.91 -    59.89: 4
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" CA  GLY A  73 "
           model="   1" pdb=" C   GLY A  73 "
           model="   1" pdb=" N   ASP A  74 "
           model="   1" pdb=" CA  ASP A  74 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  140.90   39.10     0      5.00e+00 4.00e-02 6.11e+01
  dihedral model="   1" pdb=" N   ASP A  95 "
           model="   1" pdb=" C   ASP A  95 "
           model="   1" pdb=" CA  ASP A  95 "
           model="   1" pdb=" CB  ASP A  95 "
      ideal   model   delta  harmonic     sigma   weight residual
     122.80  138.42  -15.62     0      2.50e+00 1.60e-01 3.91e+01
  dihedral model="   1" pdb=" C   ASP A  95 "
           model="   1" pdb=" N   ASP A  95 "
           model="   1" pdb=" CA  ASP A  95 "
           model="   1" pdb=" CB  ASP A  95 "
      ideal   model   delta  harmonic     sigma   weight residual
    -122.60 -136.80   14.20     0      2.50e+00 1.60e-01 3.23e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.001 -    0.106: 124
       0.106 -    0.210: 32
       0.210 -    0.315: 12
       0.315 -    0.419: 4
     7
        2.85 -     3.43: 5224
        3.43 -     4.02: 6525
        4.02 -     4.60: 9657
  Nonbonded interactions: 26452
  Sorted by model distance:
  nonbonded model="   1" pdb="HH12 ARG A  21 "
            model="   1" pdb=" OD2 ASP A  29 "
     model   vdw
     1.679 1.850
  nonbonded model="   1" pdb=" H   SER A  76 "
            model="   1" pdb=" H   ILE A  77 "
     model   vdw
     1.774 2.100
  nonbonded model="   1" pdb=" HA  LEU A  53 "
            model="   1" pdb="HD23 LEU A  53 "
     model   vdw
     1.819 2.440
  nonbonded model="   1" pdb=" HZ3 LYS A  63 "
            model="   1" pdb=" OD2 ASP A 103 "
     model   vdw
     1.827 1.850
  nonbonded model="   1" pdb=" H   THR A   5 "
            model="   1" pdb=" OE1 GLU A   8 "
     model   vdw
     1.890 1.850
  ... (remaining 26447 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.
  0.620 -    0.775: 1
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CG  LEU A   2 "
            model="   1" pdb=" CB  LEU A   2 "
            model="   1" pdb=" CD1 LEU A   2 "
            model="   1" pdb=" CD2 LEU A   2 "
    both_signs  ideal   model   delta    sigma   weight residual
      False     -2.59   -1.81   -0.78 2.00e-01 2.50e+01 1.50e+01
  chirality model="   1" pdb=" CA  ASP A  47 "
            model="   1" pdb=" N   ASP A  47 "
            model="   1" pdb=" C   ASP A  47 "
            model="   1" pdb=" CB  ASP A  47 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.09    0.42 2.00e-01 2.50e+01 4.49e+00
  chirality model="   1" pdb=" CA  SER A  76 "
            model="   1" pdb=" N   SER A  76 "
            model="   1" pdb=" C   SER A  76 "
            model="   1" pdb=" CB  SER A  76 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.18    0.33 2.00e-01 2.50e+01 2.77e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  12 "   -0.034 2.00e-02 2.50e+03   7.16e-02 1.54e+02
        model="   1" pdb=" CG  TYR A  12 "   -0.015 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  12 "    0.026 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  12 "   -0.029 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  12 "    0.006 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  12 "    0.059 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  12 "    0.003 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  12 "   -0.134 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  12 "    0.067 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  12 "   -0.096 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  12 "   -0.007 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  12 "    0.154 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A 105 "   -0.113 2.00e-02 2.50e+03   5.45e-02 8.93e+01
        model="   1" pdb=" CG  TYR A 105 "    0.002 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A 105 "    0.042 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A 105 "    0.009 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A 105 "   -0.012 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A 105 "    0.023 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A 105 "   -0.021 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A 105 "   -0.059 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A 105 "    0.105 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A 105 "    0.005 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A 105 "   -0.043 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A 105 "    0.061 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A 111 "   -0.093 2.00e-02 2.50e+03   5.35e-02 8.59e+01
        model="   1" pdb=" CG  TYR A 111 "   -0.017 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A 111 "    0.026 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A 111 "    0.005 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A 111 "    0.011 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A 111 "    0.031 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A 111 "   -0.015 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A 111 "   -0.113 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A 111 "    0.064 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A 111 "    0.004 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A 111 "    0.018 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A 111 "    0.079 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.51 -     2.13: 88
        2.13 -     2.75: 390  0.419 -    0.524: 4
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  ASP A  95 "
            model="   1" pdb=" N   ASP A  95 "
            model="   1" pdb=" C   ASP A  95 "
            model="   1" pdb=" CB  ASP A  95 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    1.99    0.52 2.00e-01 2.50e+01 6.87e+00
  chirality model="   1" pdb=" CA  HIS A  43 "
            model="   1" pdb=" N   HIS A  43 "
            model="   1" pdb=" C   HIS A  43 "
            model="   1" pdb=" CB  HIS A  43 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.01    0.50 2.00e-01 2.50e+01 6.28e+00
  chirality model="   1" pdb=" CB  ILE A  86 "
            model="   1" pdb=" CA  ILE A  86 "
            model="   1" pdb=" CG1 ILE A  86 "
            model="   1" pdb=" CG2 ILE A  86 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.64    2.17    0.47 2.00e-01 2.50e+01 5.55e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  PHE A  15 "   -0.146 2.00e-02 2.50e+03   1.04e-01 3.24e+02
        model="   1" pdb=" CG  PHE A  15 "   -0.008 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 PHE A  15 "   -0.011 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 PHE A  15 "    0.083 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 PHE A  15 "    0.044 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 PHE A  15 "   -0.047 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  PHE A  15 "   -0.022 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 PHE A  15 "   -0.049 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 PHE A  15 "    0.231 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 PHE A  15 "    0.125 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 PHE A  15 "   -0.151 2.00e-02 2.50e+03
        model="   1" pdb=" HZ  PHE A  15 "   -0.050 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  81 "    0.117 2.00e-02 2.50e+03   7.21e-02 1.56e+02
        model="   1" pdb=" CG  TYR A  81 "    0.006 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  81 "   -0.013 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  81 "   -0.023 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  81 "   -0.043 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  81 "   -0.033 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  81 "   -0.007 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  81 "    0.181 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  81 "   -0.006 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  81 "   -0.034 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  81 "   -0.088 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  81 "   -0.057 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  PHE A  67 "    0.132 2.00e-02 2.50e+03   5.60e-02 9.41e+01
        model="   1" pdb=" CG  PHE A  67 "   -0.022 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 PHE A  67 "   -0.041 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 PHE A  67 "   -0.032 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 PHE A  67 "    0.016 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 PHE A  67 "    0.006 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  PHE A  67 "    0.006 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 PHE A  67 "   -0.091 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 PHE A  67 "   -0.063 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 PHE A  67 "    0.059 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 PHE A  67 "    0.030 2.00e-02 2.50e+03
        model="   1" pdb=" HZ  PHE A  67 "   -0.001 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.62 -     2.21: 158
        2.21 -     2.81: 441
        2.75 -     3.36: 5997
        3.36 -     3.98: 7048
        3.98 -     4.60: 10587
  Nonbonded interactions: 27621
  Sorted by model distance:
  nonbonded model="   1" pdb=" HG  LEU A   2 "
            model="   1" pdb=" H   ILE A   4 "
     model   vdw
     1.511 2.270
  nonbonded model="   1" pdb=" H   ILE A  30 "
            model="   1" pdb=" HB  ILE A  30 "
     model   vdw
     1.570 2.270
  nonbonded model="   1" pdb="HD21 LEU A   2 "
            model="   1" pdb=" HB  ILE A   4 "
     model   vdw
     1.716 2.440
  nonbonded model="   1" pdb=" HZ1 LYS A  10 "
            model="   1" pdb=" OD1 ASP A  23 "
     model   vdw
     1.760 1.850
  nonbonded model="   1" pdb=" OD2 ASP A  36 "
            model="   1" pdb=" HH  TYR A  68 "
     model   vdw
     1.765 1.850
  ... (remaining 27616 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.
17
        2.81 -     3.41: 5663
        3.41 -     4.00: 6863
        4.00 -     4.60: 10395
  Nonbonded interactions: 27496
  Sorted by model distance:
  nonbonded model="   1" pdb=" HZ3 LYS A 101 "
            model="   1" pdb=" OE1 GLU A 120 "
     model   vdw
     1.618 1.850
  nonbonded model="   1" pdb=" OE1 GLU A  84 "
            model="   1" pdb=" HG  SER A  97 "
     model   vdw
     1.805 1.850
  nonbonded model="   1" pdb=" OE2 GLU A  16 "
            model="   1" pdb=" HZ2 LYS A  19 "
     model   vdw
     1.809 1.850
  nonbonded model="   1" pdb="HG23 VAL A  41 "
            model="   1" pdb=" H   ASP A  44 "
     model   vdw
     1.810 2.270
  nonbonded model="   1" pdb=" H   LEU A  53 "
            model="   1" pdb=" HG  LEU A  53 "
     model   vdw
     1.827 2.270
  ... (remaining 27491 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.
  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 122
        1.23 -     1.43: 342
        1.43 -     1.62: 667
        1.62 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" C   TYR A  81 "
       model="   1" pdb=" N   THR A  82 "
    ideal  model  delta    sigma   weight residual
    1.329  1.411 -0.082 1.40e-02 5.10e+03 3.47e+01
  bond model="   1" pdb=" C   THR A  92 "
       model="   1" pdb=" O   THR A  92 "
    ideal  model  delta    sigma   weight residual
    1.231  1.146  0.085 2.00e-02 2.50e+03 1.80e+01
  bond model="   1" pdb=" N   ILE A  30 "
       model="   1" pdb=" CA  ILE A  30 "
    ideal  model  delta    sigma   weight residual
    1.458  1.386  0.072 1.90e-02 2.77e+03 1.44e+01
  bond model="   1" pdb=" CD  ARG A 127 "
       model="   1" pdb=" NE  ARG A 127 "
    ideal  model  delta    sigma   weight residual
    1.458  1.508 -0.050 1.40e-02 5.10e+03 1.27e+01
  bond model="   1" pdb=" CE1 HIS A 138 "
       model="   1" pdb=" NE2 HIS A 138 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.15e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       93.65 -   101.45: 13
      101.45 -   109.24: 1127
      109.24 -   117.04: 1914
      117.04 -   124.83: 944
      124.83 -   132.63: 79
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" CA  ILE A  30 "
        model="   1" pdb=" CB  ILE A  30 "
        model="   1" pdb=" CG1 ILE A  30 "
      ideal   model   delta    sigma   weight residual
     110.40  129.52  -19.12 1.70e+00 3.46e-01 1.26e+02
  angle model="   1" pdb=" CA  ILE A  30 "
        model="   1" pdb=" CB  ILE A  30 "
        model="   1" pdb=" CG2 ILE A  30 "
      ideal   model   delta    sigma   weight residual
     110.50   95.26   15.24 1.70e+00 3.46e-01 8.03e+01
  angle model="   1" pdb=" CA  THR A  92 "
        model="   1" pdb=" C   THR A  92 "
        model="   1" pdb=" N   LEU A  93 "
      ideal   model   delta    sigma   weight residual
     116.20  131.19  -14.99 2.00e+00 2.50e-01 5.62e+01
  angle model="   1" pdb=" C   TYR A  81 "
        model="   1" pdb=" CA  TYR A  81 "
        model="   1" pdb=" CB  TYR A  81 "
      ideal   model   delta    sigma   weight residual
     110.10   95.88   14.22 1.90e+00 2.77e-01 5.60e+01
  angle model="   1" pdb=" CG2 ILE A  30 "
        model="   1" pdb=" CB  ILE A  30 "
        model="   1" pdb=" HB  ILE A  30 "
      ideal   model   delta    sigma   weight residual
     109.00  131.19  -22.19 3.00e+00 1.11e-01 5.47e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    17.78: 973
       17.78 -    35.56: 42
       35.56 -    53.33: 13
       53.33 -    71.11: 3
       71.11 -    88.89: 1
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" CA  HIS A 135 "
           model="   1" pdb=" C   HIS A 135 "
           model="   1" pdb=" N   HIS A 136 "
           model="   1" pdb=" CA  HIS A 136 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  144.22   35.78     0      5.00e+00 4.00e-02 5.12e+01
  dihedral model="   1" pdb=" CA  HIS A 136 "
           model="   1" pdb=" C   HIS A 136 "
           model="   1" pdb=" N   HIS A 137 "
           model="   1" pdb=" CA  HIS A 137 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  149.79   30.21     0      5.00e+00 4.00e-02 3.65e+01
  dihedral model="   1" pdb=" N   THR A  82 "
           model="   1" pdb=" C   THR A  82 "
           model="   1" pdb=" CA  THR A  82 "
           model="   1" pdb=" CB  THR A  82 "
      ideal   model   delta  harmonic     sigma   weight residual
     123.40  137.70  -14.30     0      2.50e+00 1.60e-01 3.27e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.000 -    0.108: 137
       0.108 -    0.216: 31
       0.216 -    0.324: 5
       0.324 -    0.432: 2
       0.432 -    0.540: 1
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  THR A  82 "
            model="   1" pdb=" N   THR A  82 "
            model="   1" pdb=" C   THR A  82 "
            model="   1" pdb=" CB  THR A  82 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.53    1.99    0.54 2.00e-01 2.50e+01 7.29e+00
  chirality model="   1" pdb=" CA  ASP A  88 "
            model="   1" pdb=" N   ASP A  88 "
            model="   1" pdb=" C   ASP A  88 "
            model="   1" pdb=" CB  ASP A  88 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.12    0.39 2.00e-01 2.50e+01 3.89e+00
  chirality model="   1" pdb=" CA  HIS A 136 "
            model="   1" pdb=" N   HIS A 136 "
            model="   1" pdb=" C   HIS A 136 "
            model="   1" pdb=" CB  HIS A 136 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.17    0.34 2.00e-01 2.50e+01 2.82e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  PHE A  45 "    0.057 2.00e-02 2.50e+03   4.69e-02 6.60e+01
        model="   1" pdb=" CG  PHE A  45 "   -0.001 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 PHE A  45 "   -0.029 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 PHE A  45 "    0.006 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 PHE A  45 "    0.006 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 PHE A  45 "   -0.031 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  PHE A  45 "    0.025 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 PHE A  45 "   -0.071 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 PHE A  45 "    0.036 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 PHE A  45 "    0.017 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 PHE A  45 "   -0.091 2.00e-02 2.50e+03
        model="   1" pdb=" HZ  PHE A  45 "    0.076 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  89 "    0.036 2.00e-02 2.50e+03   3.72e-02 4.14e+01
        model="   1" pdb=" CG  TYR A  89 "    0.055 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  89 "    0.005 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  89 "   -0.009 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  89 "   -0.021 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  89 "   -0.007 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  89 "    0.007 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  89 "    0.071 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  89 "   -0.011 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  89 "   -0.054 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  89 "   -0.057 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  89 "   -0.015 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  81 "   -0.072 2.00e-02 2.50e+03   2.92e-02 2.56e+01
        model="   1" pdb=" CG  TYR A  81 "    0.009 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  81 "    0.016 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  81 "    0.014 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  81 "    0.008 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  81 "    0.009 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  81 "   -0.005 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  81 "   -0.053 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  81 "    0.027 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  81 "    0.022 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  81 "    0.010 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  81 "    0.015 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.62 -     2.22: 182
        2.22 -     2.81: 44  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 129
        1.23 -     1.43: 335
        1.43 -     1.63: 667
        1.63 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" CE1 HIS A  43 "
       model="   1" pdb=" NE2 HIS A  43 "
    ideal  model  delta    sigma   weight residual
    1.321  1.356 -0.035 1.00e-02 1.00e+04 1.19e+01
  bond model="   1" pdb=" CE1 HIS A 135 "
       model="   1" pdb=" NE2 HIS A 135 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.18e+01
  bond model="   1" pdb=" CE1 HIS A 139 "
       model="   1" pdb=" NE2 HIS A 139 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.18e+01
  bond model="   1" pdb=" CE1 HIS A 138 "
       model="   1" pdb=" NE2 HIS A 138 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.17e+01
  bond model="   1" pdb=" CE1 HIS A 136 "
       model="   1" pdb=" NE2 HIS A 136 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.17e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       96.09 -   103.19: 19
      103.19 -   110.29: 2159
      110.29 -   117.39: 889
      117.39 -   124.49: 908
      124.49 -   131.59: 102
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" CA  LYS A 113 "
        model="   1" pdb=" C   LYS A 113 "
        model="   1" pdb=" N   PRO A 114 "
      ideal   model   delta    sigma   weight residual
     116.90  125.69   -8.79 1.50e+00 4.44e-01 3.43e+01
  angle model="   1" pdb=" CD1 LEU A  61 "
        model="   1" pdb=" CG  LEU A  61 "
        model="   1" pdb=" CD2 LEU A  61 "
      ideal   model   delta    sigma   weight residual
     110.80  100.06   10.74 2.20e+00 2.07e-01 2.38e+01
  angle model="   1" pdb=" ND1 HIS A  43 "
        model="   1" pdb=" CG  HIS A  43 "
        model="   1" pdb=" CD2 HIS A  43 "
      ideal   model   delta    sigma   weight residual
     106.10  110.80   -4.70 1.00e+00 1.00e+00 2.21e+01
  angle model="   1" pdb=" CA  ASP A  88 "
        model="   1" pdb=" CB  ASP A  88 "
        model="   1" pdb=" CG  ASP A  88 "
      ideal   model   delta    sigma   weight residual
     112.60  107.98    4.62 1.00e+00 1.00e+00 2.14e+01
  angle model="   1" pdb=" ND1 HIS A 135 "
        model="   1" pdb=" CG  HIS A 135 "
        model="   1" pdb=" CD2 HIS A 135 "
      ideal   model   delta    sigma   weight residual
     106.10  110.40   -4.30 1.00e+00 1.00e+00 1.85e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    11.60: 939
       11.60 -    23.20: 70
       23.20 -    34.80: 13
       34.80 -    46.40: 6
       46.40 -    58.00: 4
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" N   LEU A  99 "
           model="   1" pdb=" C   LEU A  99 "
           model="   1" pdb=" CA  LEU A  99 "
           model="   1" pdb=" CB  LEU A  99 "
      ideal   model   delta  harmonic     sigma   weight residual
     122.80  136.03  -13.23     0      2.50e+00 1.60e-01 2.80e+01
  dihedral model="   1" pdb=" CA  TYR A  81 "
           model="   1" pdb=" C   TYR A  81 "
           model="   1" pdb=" N   THR A  82 "
           model="   1" pdb=" CA  THR A  82 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  156.88   23.12     0      5.00e+00 4.00e-02 2.14e+01
  dihedral model="   1" pdb=" CA  LYS A 113 "
           model="   1" pdb=" C   LYS A 113 "
           model="   1" pdb=" N   PRO A 114 "
           model="   1" pdb=" CA  PRO A 114 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  157.71   22.29     0      5.00e+00 4.00e-02 1.99e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.001 -    0.101: 121
       0.101 -    0.201: 51
       0.201 -    0.301: 3
       0.301 -    0.401: 0
     58
        2.81 -     3.41: 5695
        3.41 -     4.00: 6949
        4.00 -     4.60: 10407
  Nonbonded interactions: 27691
  Sorted by model distance:
  nonbonded model="   1" pdb="HD13 LEU A   2 "
            model="   1" pdb="HG22 ILE A  30 "
     model   vdw
     1.622 2.440
  nonbonded model="   1" pdb=" OE1 GLU A  84 "
            model="   1" pdb="HH22 ARG A 127 "
     model   vdw
     1.711 1.850
  nonbonded model="   1" pdb=" HZ2 LYS A  63 "
            model="   1" pdb=" OD2 ASP A 103 "
     model   vdw
     1.725 1.850
  nonbonded model="   1" pdb=" HG  LEU A   2 "
            model="   1" pdb=" H   ILE A   4 "
     model   vdw
     1.729 2.270
  nonbonded model="   1" pdb="HD12 LEU A   2 "
            model="   1" pdb=" H   LEU A   3 "
     model   vdw
     1.752 2.270
  ... (remaining 27686 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.
  0.401 -    0.501: 1
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  LEU A  99 "
            model="   1" pdb=" N   LEU A  99 "
            model="   1" pdb=" C   LEU A  99 "
            model="   1" pdb=" CB  LEU A  99 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.01    0.50 2.00e-01 2.50e+01 6.27e+00
  chirality model="   1" pdb=" CA  ASN A  72 "
            model="   1" pdb=" N   ASN A  72 "
            model="   1" pdb=" C   ASN A  72 "
            model="   1" pdb=" CB  ASN A  72 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.24    0.27 2.00e-01 2.50e+01 1.88e+00
  chirality model="   1" pdb=" CA  THR A  92 "
            model="   1" pdb=" N   THR A  92 "
            model="   1" pdb=" C   THR A  92 "
            model="   1" pdb=" CB  THR A  92 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.53    2.29    0.24 2.00e-01 2.50e+01 1.41e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  PHE A  15 "   -0.234 2.00e-02 2.50e+03   1.26e-01 4.79e+02
        model="   1" pdb=" CG  PHE A  15 "   -0.041 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 PHE A  15 "    0.082 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 PHE A  15 "    0.020 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 PHE A  15 "   -0.012 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 PHE A  15 "    0.056 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  PHE A  15 "   -0.071 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 PHE A  15 "    0.228 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 PHE A  15 "    0.036 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 PHE A  15 "   -0.034 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 PHE A  15 "    0.165 2.00e-02 2.50e+03
        model="   1" pdb=" HZ  PHE A  15 "   -0.195 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  12 "   -0.015 2.00e-02 2.50e+03   4.13e-02 5.12e+01
        model="   1" pdb=" CG  TYR A  12 "   -0.028 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  12 "    0.014 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  12 "   -0.018 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  12 "    0.001 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  12 "    0.035 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  12 "    0.015 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  12 "   -0.074 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  12 "    0.050 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  12 "   -0.048 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  12 "   -0.016 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  12 "    0.084 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A 111 "   -0.087 2.00e-02 2.50e+03   3.87e-02 4.50e+01
        model="   1" pdb=" CG  TYR A 111 "    0.005 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A 111 "    0.016 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A 111 "    0.018 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A 111 "    0.016 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A 111 "    0.014 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A 111 "   -0.000 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A 111 "   -0.083 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A 111 "    0.025 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A 111 "    0.029 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A 111 "    0.026 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A 111 "    0.021 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.70 -     2.28: 285
        2.28 -     2.86: 5003
        2.86 -     3.44: 5226
        3.44 -     4.02: 6606
        4.02 -     4.60: 9971
  Nonbonded interactions: 27091
  Sorted by model distance:
  nonbonded model="   1" pdb=" OE2 GLU A  55 "
            model="   1" pdb="HH21 ARG A  58 "
     model   vdw
     1.701 1.850
  nonbonded model="   1" pdb=" HZ1 LYS A  10 "
            model="   1" pdb=" OD1 ASP A  23 "
     model   vdw
     1.710 1.850
  nonbonded model="   1" pdb=" OE1 GLU A  55 "
            model="   1" pdb=" HE  ARG A  58 "
     model   vdw
     1.751 1.850
  nonbonded model="   1" pdb=" HZ1 LYS A 113 "
            model="   1" pdb=" OD2 ASP A 116 "
     model   vdw
     1.764 1.850
  nonbonded model="   1" pdb=" H   TYR A  81 "
            model="   1" pdb=" H   THR A  82 "
     model   vdw
     1.785 2.100
  ... (remaining 27086 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.
  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 116
        1.23 -     1.43: 353
        1.43 -     1.63: 662
        1.63 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" CE1 HIS A 134 "
       model="   1" pdb=" NE2 HIS A 134 "
    ideal  model  delta    sigma   weight residual
    1.321  1.359 -0.038 1.00e-02 1.00e+04 1.48e+01
  bond model="   1" pdb=" CE1 HIS A 135 "
       model="   1" pdb=" NE2 HIS A 135 "
    ideal  model  delta    sigma   weight residual
    1.321  1.359 -0.038 1.00e-02 1.00e+04 1.45e+01
  bond model="   1" pdb=" CE1 HIS A  43 "
       model="   1" pdb=" NE2 HIS A  43 "
    ideal  model  delta    sigma   weight residual
    1.321  1.359 -0.038 1.00e-02 1.00e+04 1.44e+01
  bond model="   1" pdb=" CE1 HIS A 136 "
       model="   1" pdb=" NE2 HIS A 136 "
    ideal  model  delta    sigma   weight residual
    1.321  1.358 -0.037 1.00e-02 1.00e+04 1.37e+01
  bond model="   1" pdb=" CE1 HIS A 137 "
       model="   1" pdb=" NE2 HIS A 137 "
    ideal  model  delta    sigma   weight residual
    1.321  1.358 -0.037 1.00e-02 1.00e+04 1.37e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       95.65 -   103.03: 22
      103.03 -   110.41: 2172
      110.41 -   117.79: 933
      117.79 -   125.17: 891
      125.17 -   132.55: 59
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" CA  ASP A 116 "
        model="   1" pdb=" C   ASP A 116 "
        model="   1" pdb=" N   PRO A 117 "
      ideal   model   delta    sigma   weight residual
     116.90  128.30  -11.40 1.50e+00 4.44e-01 5.78e+01
  angle model="   1" pdb=" C   HIS A 138 "
        model="   1" pdb=" N   HIS A 139 "
        model="   1" pdb=" CA  HIS A 139 "
      ideal   model   delta    sigma   weight residual
     121.70  132.55  -10.85 1.80e+00 3.09e-01 3.63e+01
  angle model="   1" pdb=" N   HIS A 139 "
        model="   1" pdb=" CA  HIS A 139 "
        model="   1" pdb=" C   HIS A 139 "
      ideal   model   delta    sigma   weight residual
     111.00  126.69  -15.69 2.80e+00 1.28e-01 3.14e+01
  angle model="   1" pdb=" CA  LYS A 113 "
        model="   1" pdb=" C   LYS A 113 "
        model="   1" pdb=" N   PRO A 114 "
      ideal   model   delta    sigma   weight residual
     116.90  123.95   -7.05 1.50e+00 4.44e-01 2.21e+01
  angle model="   1" pdb=" N   ILE A 131 "
        model="   1" pdb=" CA  ILE A 131 "
        model="   1" pdb=" CB  ILE A 131 "
      ideal   model   delta    sigma   weight residual
     111.50  119.30   -7.80 1.70e+00 3.46e-01 2.11e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    16.04: 966
       16.04 -    32.07: 51
       32.07 -    48.11: 7
       48.11 -    64.14: 7
       64.14 -    80.18: 1
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" C   ILE A 131 "
           model="   1" pdb=" N   ILE A 131 "
           model="   1" pdb=" CA  ILE A 131 "
           model="   1" pdb=" CB  ILE A 131 "
      ideal   model   delta  harmonic     sigma   weight residual
    -122.00 -139.39   17.39     0      2.50e+00 1.60e-01 4.84e+01
  dihedral model="   1" pdb=" N   ILE A 131 "
           model="   1" pdb=" C   ILE A 131 "
           model="   1" pdb=" CA  ILE A 131 "
           model="   1" pdb=" CB  ILE A 131 "
      ideal   model   delta  harmonic     sigma   weight residual
     123.40  140.62  -17.22     0      2.50e+00 1.60e-01 4.74e+01
  dihedral model="   1" pdb=" CA  ASP A 118 "
           model="   1" pdb=" C   ASP A 118 "
           model="   1" pdb=" N   LEU A 119 "
           model="   1" pdb=" CA  LEU A 119 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  153.74   26.26     0      5.00e+00 4.00e-02 2.76e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.002 -    0.114: 131
       0.114 -    0.227: 34
       0.227 -    0.340: 8
       0.340 -    0.452: 2
         Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 116
        1.23 -     1.43: 353
        1.43 -     1.63: 662
        1.63 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" CE1 HIS A 134 "
       model="   1" pdb=" NE2 HIS A 134 "
    ideal  model  delta    sigma   weight residual
    1.321  1.359 -0.038 1.00e-02 1.00e+04 1.48e+01
  bond model="   1" pdb=" CE1 HIS A 135 "
       model="   1" pdb=" NE2 HIS A 135 "
    ideal  model  delta    sigma   weight residual
    1.321  1.359 -0.038 1.00e-02 1.00e+04 1.45e+01
  bond model="   1" pdb=" CE1 HIS A  43 "
       model="   1" pdb=" NE2 HIS A  43 "
    ideal  model  delta    sigma   weight residual
    1.321  1.359 -0.038 1.00e-02 1.00e+04 1.44e+01
  bond model="   1" pdb=" CE1 HIS A 136 "
       model="   1" pdb=" NE2 HIS A 136 "
    ideal  model  delta    sigma   weight residual
    1.321  1.358 -0.037 1.00e-02 1.00e+04 1.37e+01
  bond model="   1" pdb=" CE1 HIS A 137 "
       model="   1" pdb=" NE2 HIS A 137 "
    ideal  model  delta    sigma   weight residual
    1.321  1.358 -0.037 1.00e-02 1.00e+04 1.37e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       95.65 -   103.03: 22
      103.03 -   110.41: 2172
      110.41 -   117.79: 933
      117.79 -   125.17: 891
      125.17 -   132.55: 59
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" CA  ASP A 116 "
        model="   1" pdb=" C   ASP A 116 "
        model="   1" pdb=" N   PRO A 117 "
      ideal   model   delta    sigma   weight residual
     116.90  128.30  -11.40 1.50e+00 4.44e-01 5.78e+01
  angle model="   1" pdb=" C   HIS A 138 "
        model="   1" pdb=" N   HIS A 139 "
        model="   1" pdb=" CA  HIS A 139 "
      ideal   model   delta    sigma   weight residual
     121.70  132.55  -10.85 1.80e+00 3.09e-01 3.63e+01
  angle model="   1" pdb=" N   HIS A 139 "
        model="   1" pdb=" CA  HIS A 139 "
        model="   1" pdb=" C   HIS A 139 "
      ideal   model   delta    sigma   weight residual
     111.00  126.69  -15.69 2.80e+00 1.28e-01 3.14e+01
  angle model="   1" pdb=" CA  LYS A 113 "
        model="   1" pdb=" C   LYS A 113 "
        model="   1" pdb=" N   PRO A 114 "
      ideal   model   delta    sigma   weight residual
     116.90  123.95   -7.05 1.50e+00 4.44e-01 2.21e+01
  angle model="   1" pdb=" N   ILE A 131 "
        model="   1" pdb=" CA  ILE A 131 "
        model="   1" pdb=" CB  ILE A 131 "
      ideal   model   delta    sigma   weight residual
     111.50  119.30   -7.80 1.70e+00 3.46e-01 2.11e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    16.04: 966
       16.04 -    32.07: 51
       32.07 -    48.11: 7
       48.11 -    64.14: 7
       64.14 -    80.18: 1
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" C   ILE A 131 "
           model="   1" pdb=" N   ILE A 131 "
           model="   1" pdb=" CA  ILE A 131 "
           model="   1" pdb=" CB  ILE A 131 "
      ideal   model   delta  harmonic     sigma   weight residual
    -122.00 -139.39   17.39     0      2.50e+00 1.60e-01 4.84e+01
  dihedral model="   1" pdb=" N   ILE A 131 "
           model="   1" pdb=" C   ILE A 131 "
           model="   1" pdb=" CA  ILE A 131 "
           model="   1" pdb=" CB  ILE A 131 "
      ideal   model   delta  harmonic     sigma   weight residual
     123.40  140.62  -17.22     0      2.50e+00 1.60e-01 4.74e+01
  dihedral model="   1" pdb=" CA  ASP A 118 "
           model="   1" pdb=" C   ASP A 118 "
           model="   1" pdb=" N   LEU A 119 "
           model="   1" pdb=" CA  LEU A 119 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  153.74   26.26     0      5.00e+00 4.00e-02 2.76e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.002 -    0.114: 131
       0.114 -    0.227: 34
       0.227 -    0.340: 8
       0.340 -    0.452: 2
       0.452 -    0.565: 1
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  ILE A 131 "
            model="   1" pdb=" N   ILE A 131 "
            model="   1" pdb=" C   ILE A 131 "
            model="   1" pdb=" CB  ILE A 131 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.43    1.87    0.56 2.00e-01 2.50e+01 7.98e+00
  chirality model="   1" pdb=" CA  ALA A 115 "
            model="   1" pdb=" N   ALA A 115 "
            model="   1" pdb=" C   ALA A 115 "
            model="   1" pdb=" CB  ALA A 115 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.48    2.06    0.42 2.00e-01 2.50e+01 4.45e+00
  chirality model="   1" pdb=" CA  SER A  76 "
            model="   1" pdb=" N   SER A  76 "
            model="   1" pdb=" C   SER A  76 "
            model="   1" pdb=" CB  SER A  76 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.13    0.38 2.00e-01 2.50e+01 3.57e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  91 "   -0.040 2.00e-02 2.50e+03   5.11e-02 7.83e+01
        model="   1" pdb=" CG  TYR A  91 "   -0.013 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  91 "    0.012 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  91 "   -0.009 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  91 "    0.016 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  91 "    0.041 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  91 "    0.004 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  91 "   -0.121 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  91 "    0.027 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  91 "   -0.041 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  91 "    0.025 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  91 "    0.099 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A 105 "   -0.121 2.00e-02 2.50e+03   5.09e-02 7.79e+01
        model="   1" pdb=" CG  TYR A 105 "    0.016 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A 105 "    0.018 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A 105 "    0.042 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A 105 "    0.011 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A 105 "   -0.012 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A 105 "   -0.025 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A 105 "   -0.038 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A 105 "    0.023 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A 105 "    0.095 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A 105 "    0.030 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A 105 "   -0.038 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  81 "   -0.105 2.00e-02 2.50e+03   4.49e-02 6.05e+01
        model="   1" pdb=" CG  TYR A  81 "    0.007 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  81 "    0.023 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  81 "    0.020 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  81 "    0.011 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  81 "    0.017 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  81 "   -0.010 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  81 "   -0.087 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  81 "    0.043 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  81 "    0.031 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  81 "    0.017 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  81 "    0.034 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.77 -     2.33: 479
        2.33 -     2.90: 5111  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 135
        1.23 -     1.43: 329
        1.43 -     1.63: 667
        1.63 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" C   ALA A 124 "
       model="   1" pdb=" N   LYS A 125 "
    ideal  model  delta    sigma   weight residual
    1.329  1.376 -0.047 1.40e-02 5.10e+03 1.14e+01
  bond model="   1" pdb=" CE1 HIS A 134 "
       model="   1" pdb=" NE2 HIS A 134 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.13e+01
  bond model="   1" pdb=" CD  ARG A 127 "
       model="   1" pdb=" NE  ARG A 127 "
    ideal  model  delta    sigma   weight residual
    1.458  1.504 -0.046 1.40e-02 5.10e+03 1.10e+01
  bond model="   1" pdb=" CE1 HIS A 138 "
       model="   1" pdb=" NE2 HIS A 138 "
    ideal  model  delta    sigma   weight residual
    1.321  1.354 -0.033 1.00e-02 1.00e+04 1.09e+01
  bond model="   1" pdb=" CE1 HIS A 137 "
       model="   1" pdb=" NE2 HIS A 137 "
    ideal  model  delta    sigma   weight residual
    1.321  1.354 -0.033 1.00e-02 1.00e+04 1.09e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       91.42 -    99.60: 8
       99.60 -   107.78: 542
      107.78 -   115.96: 2447
      115.96 -   124.14: 969
      124.14 -   132.32: 111
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" CG1 ILE A  77 "
        model="   1" pdb=" CB  ILE A  77 "
        model="   1" pdb=" HB  ILE A  77 "
      ideal   model   delta    sigma   weight residual
     109.00   91.42   17.58 3.00e+00 1.11e-01 3.43e+01
  angle model="   1" pdb=" N   THR A  92 "
        model="   1" pdb=" CA  THR A  92 "
        model="   1" pdb=" HA  THR A  92 "
      ideal   model   delta    sigma   weight residual
     110.00   93.77   16.23 3.00e+00 1.11e-01 2.93e+01
  angle model="   1" pdb=" C   PRO A 117 "
        model="   1" pdb=" CA  PRO A 117 "
        model="   1" pdb=" HA  PRO A 117 "
      ideal   model   delta    sigma   weight residual
     109.00   93.43   15.57 3.00e+00 1.11e-01 2.69e+01
  angle model="   1" pdb=" N   PRO A 117 "
        model="   1" pdb=" CA  PRO A 117 "
        model="   1" pdb=" C   PRO A 117 "
      ideal   model   delta    sigma   weight residual
     112.10  124.94  -12.84 2.50e+00 1.60e-01 2.64e+01
  angle model="   1" pdb=" CA  THR A  92 "
        model="   1" pdb=" CB  THR A  92 "
        model="   1" pdb=" OG1 THR A  92 "
      ideal   model   delta    sigma   weight residual
     109.60  116.96   -7.36 1.50e+00 4.44e-01 2.41e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    12.80: 952
       12.80 -    25.61: 56
       25.61 -    38.41: 15
       38.41 -    51.21: 4
       51.21 -    64.01: 5
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" N   THR A  92 "
           model="   1" pdb=" C   THR A  92 "
           model="   1" pdb=" CA  THR A  92 "
           model="   1" pdb=" CB  THR A  92 "
      ideal   model   delta  harmonic     sigma   weight residual
     123.40  139.18  -15.78     0      2.50e+00 1.60e-01 3.99e+01
  dihedral model="   1" pdb=" C   THR A  92 "
           model="   1" pdb=" N   THR A  92 "
           model="   1" pdb=" CA  THR A  92 "
           model="   1" pdb=" CB  THR A  92 "
      ideal   model   delta  harmonic     sigma   weight residual
    -122.00 -135.99   13.99     0      2.50e+00 1.60e-01 3.13e+01
  dihedral model="   1" pdb=" CA  ILE A  51 "
           model="   1" pdb=" C   ILE A  51 "
           model="   1" pdb=" N   PRO A  52 "
           model="   1" pdb=" CA  PRO A  52 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  153.18   26.82     0      5.00e+00 4.00e-02 2.88e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.001 -    0.124: 149
       0.124 -    0.247: 18
       0.247 -    0.370: 4
       0.370 -    0.494: 2
      0.452 -    0.565: 1
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  ILE A 131 "
            model="   1" pdb=" N   ILE A 131 "
            model="   1" pdb=" C   ILE A 131 "
            model="   1" pdb=" CB  ILE A 131 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.43    1.87    0.56 2.00e-01 2.50e+01 7.98e+00
  chirality model="   1" pdb=" CA  ALA A 115 "
            model="   1" pdb=" N   ALA A 115 "
            model="   1" pdb=" C   ALA A 115 "
            model="   1" pdb=" CB  ALA A 115 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.48    2.06    0.42 2.00e-01 2.50e+01 4.45e+00
  chirality model="   1" pdb=" CA  SER A  76 "
            model="   1" pdb=" N   SER A  76 "
            model="   1" pdb=" C   SER A  76 "
            model="   1" pdb=" CB  SER A  76 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.13    0.38 2.00e-01 2.50e+01 3.57e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  91 "   -0.040 2.00e-02 2.50e+03   5.11e-02 7.83e+01
        model="   1" pdb=" CG  TYR A  91 "   -0.013 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  91 "    0.012 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  91 "   -0.009 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  91 "    0.016 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  91 "    0.041 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  91 "    0.004 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  91 "   -0.121 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  91 "    0.027 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  91 "   -0.041 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  91 "    0.025 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  91 "    0.099 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A 105 "   -0.121 2.00e-02 2.50e+03   5.09e-02 7.79e+01
        model="   1" pdb=" CG  TYR A 105 "    0.016 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A 105 "    0.018 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A 105 "    0.042 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A 105 "    0.011 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A 105 "   -0.012 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A 105 "   -0.025 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A 105 "   -0.038 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A 105 "    0.023 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A 105 "    0.095 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A 105 "    0.030 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A 105 "   -0.038 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  81 "   -0.105 2.00e-02 2.50e+03   4.49e-02 6.05e+01
        model="   1" pdb=" CG  TYR A  81 "    0.007 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  81 "    0.023 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  81 "    0.020 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  81 "    0.011 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  81 "    0.017 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  81 "   -0.010 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  81 "   -0.087 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  81 "    0.043 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  81 "    0.031 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  81 "    0.017 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  81 "    0.034 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.77 -     2.33: 479
        2.33 -     2.90: 5111 0.494 -    0.617: 3
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CB  ILE A  77 "
            model="   1" pdb=" CA  ILE A  77 "
            model="   1" pdb=" CG1 ILE A  77 "
            model="   1" pdb=" CG2 ILE A  77 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.64    2.03    0.62 2.00e-01 2.50e+01 9.51e+00
  chirality model="   1" pdb=" CA  THR A  92 "
            model="   1" pdb=" N   THR A  92 "
            model="   1" pdb=" C   THR A  92 "
            model="   1" pdb=" CB  THR A  92 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.53    1.91    0.61 2.00e-01 2.50e+01 9.39e+00
  chirality model="   1" pdb=" CA  PRO A 117 "
            model="   1" pdb=" N   PRO A 117 "
            model="   1" pdb=" C   PRO A 117 "
            model="   1" pdb=" CB  PRO A 117 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.72    2.15    0.57 2.00e-01 2.50e+01 8.12e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  91 "    0.170 2.00e-02 2.50e+03   7.68e-02 1.77e+02
        model="   1" pdb=" CG  TYR A  91 "   -0.014 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  91 "   -0.064 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  91 "   -0.021 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  91 "    0.025 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  91 "   -0.016 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  91 "    0.025 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  91 "    0.035 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  91 "   -0.157 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  91 "   -0.030 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  91 "    0.085 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  91 "   -0.039 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  68 "   -0.059 2.00e-02 2.50e+03   5.76e-02 9.96e+01
        model="   1" pdb=" CG  TYR A  68 "   -0.017 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  68 "    0.036 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  68 "   -0.016 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  68 "   -0.017 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  68 "    0.037 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  68 "   -0.019 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  68 "   -0.062 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  68 "    0.108 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  68 "   -0.051 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  68 "   -0.050 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  68 "    0.109 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A 111 "    0.016 2.00e-02 2.50e+03   3.57e-02 3.82e+01
        model="   1" pdb=" CG  TYR A 111 "    0.030 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A 111 "   -0.006 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A 111 "    0.011 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A 111 "   -0.010 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A 111 "   -0.026 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A 111 "    0.007 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A 111 "    0.077 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A 111 "   -0.027 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A 111 "    0.023 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A 111 "   -0.024 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A 111 "   -0.073 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.66 -     2.25: 189
        2.25 -     2.84: 466
        2.90 -     3.47: 5153
        3.47 -     4.03: 6524
        4.03 -     4.60: 9944
  Nonbonded interactions: 27211
  Sorted by model distance:
  nonbonded model="   1" pdb=" HE  ARG A  21 "
            model="   1" pdb=" OE2 GLU A  75 "
     model   vdw
     1.768 1.850
  nonbonded model="   1" pdb=" OE2 GLU A  32 "
            model="   1" pdb=" HH  TYR A  68 "
     model   vdw
     1.865 1.850
  nonbonded model="   1" pdb=" H   LEU A  53 "
            model="   1" pdb=" HG  LEU A  53 "
     model   vdw
     1.873 2.270
  nonbonded model="   1" pdb=" OD2 ASP A  47 "
            model="   1" pdb=" HH  TYR A 111 "
     model   vdw
     1.893 1.850
  nonbonded model="   1" pdb=" H   GLY A  42 "
            model="   1" pdb=" O   TYR A 111 "
     model   vdw
     1.902 1.850
  ... (remaining 27206 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

        2.90 -     3.47: 5153
        3.47 -     4.03: 6524
        4.03 -     4.60: 9944
  Nonbonded interactions: 27211
  Sorted by model distance:
  nonbonded model="   1" pdb=" HE  ARG A  21 "
            model="   1" pdb=" OE2 GLU A  75 "
     model   vdw
     1.768 1.850
  nonbonded model="   1" pdb=" OE2 GLU A  32 "
            model="   1" pdb=" HH  TYR A  68 "
     model   vdw
     1.865 1.850
  nonbonded model="   1" pdb=" H   LEU A  53 "
            model="   1" pdb=" HG  LEU A  53 "
     model   vdw
     1.873 2.270
  nonbonded model="   1" pdb=" OD2 ASP A  47 "
            model="   1" pdb=" HH  TYR A 111 "
     model   vdw
     1.893 1.850
  nonbonded model="   1" pdb=" H   GLY A  42 "
            model="   1" pdb=" O   TYR A 111 "
     model   vdw
     1.902 1.850
  ... (remaining 27206 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.
7
        2.84 -     3.42: 5343
        3.42 -     4.01: 6508
        4.01 -     4.60: 9826
  Nonbonded interactions: 26533
  Sorted by model distance:
  nonbonded model="   1" pdb="HG21 ILE A  38 "
            model="   1" pdb=" H   SER A  46 "
     model   vdw
     1.662 2.270
  nonbonded model="   1" pdb="HG12 ILE A  77 "
            model="   1" pdb=" HB  THR A  92 "
     model   vdw
     1.758 2.440
  nonbonded model="   1" pdb=" OE1 GLU A  16 "
            model="   1" pdb=" H   GLU A  16 "
     model   vdw
     1.780 1.850
  nonbonded model="   1" pdb=" H   ILE A  77 "
            model="   1" pdb="HG22 ILE A  77 "
     model   vdw
     1.806 2.270
  nonbonded model="   1" pdb="HE21 GLN A 100 "
            model="   1" pdb="HD12 ILE A 108 "
     model   vdw
     1.843 2.270
  ... (remaining 26528 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 1.13
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 1.27 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 131
        1.23 -     1.43: 336
        1.43 -     1.63: 664
        1.63 -     1.83: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" CE1 HIS A 137 "
       model="   1" pdb=" NE2 HIS A 137 "
    ideal  model  delta    sigma   weight residual
    1.321  1.357 -0.036 1.00e-02 1.00e+04 1.27e+01
  bond model="   1" pdb=" CE1 HIS A 134 "
       model="   1" pdb=" NE2 HIS A 134 "
    ideal  model  delta    sigma   weight residual
    1.321  1.356 -0.035 1.00e-02 1.00e+04 1.25e+01
  bond model="   1" pdb=" CE1 HIS A 135 "
       model="   1" pdb=" NE2 HIS A 135 "
    ideal  model  delta    sigma   weight residual
    1.321  1.356 -0.035 1.00e-02 1.00e+04 1.25e+01
  bond model="   1" pdb=" CE1 HIS A  43 "
       model="   1" pdb=" NE2 HIS A  43 "
    ideal  model  delta    sigma   weight residual
    1.321  1.356 -0.035 1.00e-02 1.00e+04 1.24e+01
  bond model="   1" pdb=" CE1 HIS A 139 "
       model="   1" pdb=" NE2 HIS A 139 "
    ideal  model  delta    sigma   weight residual
    1.321  1.356 -0.035 1.00e-02 1.00e+04 1.21e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       96.07 -   103.23: 30
      103.23 -   110.40: 2154
      110.40 -   117.56: 900
      117.56 -   124.72: 914
      124.72 -   131.88: 79
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" CA  ASP A  29 "
        model="   1" pdb=" CB  ASP A  29 "
        model="   1" pdb=" CG  ASP A  29 "
      ideal   model   delta    sigma   weight residual
     112.60  120.37   -7.77 1.00e+00 1.00e+00 6.04e+01
  angle model="   1" pdb=" CA  PHE A  45 "
        model="   1" pdb=" CB  PHE A  45 "
        model="   1" pdb=" CG  PHE A  45 "
      ideal   model   delta    sigma   weight residual
     113.80  107.68    6.12 1.00e+00 1.00e+00 3.75e+01
  angle model="   1" pdb=" CA  ASP A 116 "
        model="   1" pdb=" C   ASP A 116 "
        model="   1" pdb=" N   PRO A 117 "
      ideal   model   delta    sigma   weight residual
     116.90  125.64   -8.74 1.50e+00 4.44e-01 3.40e+01
  angle model="   1" pdb=" CA  LYS A 113 "
        model="   1" pdb=" C   LYS A 113 "
        model="   1" pdb=" N   PRO A 114 "
      ideal   model   delta    sigma   weight residual
     116.90  124.90   -8.00 1.50e+00 4.44e-01 2.84e+01
  angle model="   1" pdb=" ND1 HIS A  43 "
        model="   1" pdb=" CG  HIS A  43 "
        model="   1" pdb=" CD2 HIS A  43 "
      ideal   model   delta    sigma   weight residual
     106.10  110.85   -4.75 1.00e+00 1.00e+00 2.25e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    13.12: 962
       13.12 -    26.24: 48
       26.24 -    39.36: 15
       39.36 -    52.47: 5
       52.47 -    65.59: 2
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" CA  HIS A 138 "
           model="   1" pdb=" C   HIS A 138 "
           model="   1" pdb=" N   HIS A 139 "
           model="   1" pdb=" CA  HIS A 139 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  151.97   28.03     0      5.00e+00 4.00e-02 3.14e+01
  dihedral model="   1" pdb=" C   VAL A  14 "
           model="   1" pdb=" N   VAL A  14 "
           model="   1" pdb=" CA  VAL A  14 "
           model="   1" pdb=" CB  VAL A  14 "
      ideal   model   delta  harmonic     sigma   weight residual
    -122.00 -135.88   13.88     0      2.50e+00 1.60e-01 3.08e+01
  dihedral model="   1" pdb=" N   VAL A  14 "
           model="   1" pdb=" C   VAL A  14 "
           model="   1" pdb=" CA  VAL A  14 "
           model="   1" pdb=" CB  VAL A  14 "
      ideal   model   delta  harmonic     sigma   weight residual
     123.40  136.07  -12.67     0      2.50e+00 1.60e-01 2.57e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.000 -    0.081: 113
       0.081 -    0.162: 41
       0.162 -    0.243: 15
       0.243 -    0.324: 5
       0.324 -    0.405: 2
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  VAL A  14 "
            model="   1" pdb=" N   VAL A  14 "
            model="   1" pdb=" C   VAL A  14 "
            model="   1" pdb=" CB  VAL A  14 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.44    2.04    0.41 2.00e-01 2.50e+01 4.10e+00
  chirality model="   1" pdb=" CA  ASP A  95 "
            model="   1" pdb=" N   ASP A  95 "
            model="   1" pdb=" C   ASP A  95 "
            model="   1" pdb=" CB  ASP A  95 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.13    0.38 2.00e-01 2.50e+01 3.68e+00
  chirality model="   1" pdb=" CG  LEU A   3 "
            model="   1" pdb=" CB  LEU A   3 "
            model="   1" pdb=" CD1 LEU A   3 "
            model="   1" pdb=" CD2 LEU A   3 "
    both_signs  ideal   model   delta    sigma   weight residual
      False     -2.59   -2.88    0.29 2.00e-01 2.50e+01 2.06e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  PHE A  45 "    0.167 2.00e-02 2.50e+03   8.08e-02 1.96e+02
        model="   1" pdb=" CG  PHE A  45 "    0.026 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 PHE A  45 "   -0.051 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 PHE A  45 "   -0.022 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 PHE A  45 "    0.000 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 PHE A  45 "   -0.028 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  PHE A  45 "    0.046 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 PHE A  45 "   -0.137 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 PHE A  45 "   -0.051 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 PHE A  45 "    0.004 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 PHE A  45 "   -0.081 2.00e-02 2.50e+03
        model="   1" pdb=" HZ  PHE A  45 "    0.126 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  HIS A  43 "    0.102 2.00e-02 2.50e+03   6.02e-02 7.25e+01
        model="   1" pdb=" CG  HIS A  43 "   -0.089 2.00e-02 2.50e+03
        model="   1" pdb=" ND1 HIS A  43 "   -0.077 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 HIS A  43 "   -0.019 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 HIS A  43 "    0.009 2.00e-02 2.50e+03
        model="   1" pdb=" NE2 HIS A  43 "    0.047 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 HIS A  43 "   -0.016 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 HIS A  43 "    0.041 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  68 "   -0.087 2.00e-02 2.50e+03   3.97e-02 4.73e+01
        model="   1" pdb=" CG  TYR A  68 "    0.002 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  68 "    0.015 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  68 "    0.019 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  68 "    0.016 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  68 "    0.012 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  68 "   -0.010 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  68 "   -0.082 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  68 "    0.023 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  68 "    0.036 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  68 "    0.035 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  68 "    0.021 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.64 -     2.23: 155
        2.23 -     2.82: 4504
        2.82 -     3.41: 5513
        3.41 -     4.01: 6539
        4.01 -     4.60: 10068
  Nonbonded interactions: 26779
  Sorted by model distance:
  nonbonded model="   1" pdb=" OE1 GLU A  16 "
            model="   1" pdb=" HZ3 LYS A  19 "
     model   vdw
     1.637 1.850
  nonbonded model="   1" pdb=" OE1 GLU A  75 "
            model="   1" pdb=" HZ2 LYS A  79 "
     model   vdw
     1.654 1.850
  nonbonded model="   1" pdb=" HZ3 LYS A  63 "
            model="   1" pdb=" OD1 ASP A 103 "
     model   vdw
     1.740 1.850
  nonbonded model="   1" pdb=" HZ1 LYS A  10 "
            model="   1" pdb=" OD1 ASP A  23 "
     model   vdw
     1.774 1.850
  nonbonded model="   1" pdb="HG23 VAL A  41 "
            model="   1" pdb=" H   HIS A  43 "
     model   vdw
     1.814 2.270
  ... (remaining 26774 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.
  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 124
        1.23 -     1.43: 346
        1.43 -     1.62: 661
        1.62 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" N   PRO A  54 "
       model="   1" pdb=" CD  PRO A  54 "
    ideal  model  delta    sigma   weight residual
    1.473  1.362  0.111 1.40e-02 5.10e+03 6.30e+01
  bond model="   1" pdb=" C   ASP A 116 "
       model="   1" pdb=" O   ASP A 116 "
    ideal  model  delta    sigma   weight residual
    1.231  1.118  0.113 2.00e-02 2.50e+03 3.18e+01
  bond model="   1" pdb=" C   ASP A 116 "
       model="   1" pdb=" N   PRO A 117 "
    ideal  model  delta    sigma   weight residual
    1.341  1.418 -0.077 1.60e-02 3.91e+03 2.33e+01
  bond model="   1" pdb=" C   ILE A  30 "
       model="   1" pdb=" N   LEU A  31 "
    ideal  model  delta    sigma   weight residual
    1.329  1.380 -0.051 1.40e-02 5.10e+03 1.35e+01
  bond model="   1" pdb=" C   LEU A   9 "
       model="   1" pdb=" N   LYS A  10 "
    ideal  model  delta    sigma   weight residual
    1.329  1.379 -0.050 1.40e-02 5.10e+03 1.29e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       86.43 -    95.73: 3
       95.73 -   105.04: 99
      105.04 -   114.34: 2776
      114.34 -   123.65: 1028
      123.65 -   132.95: 171
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" N   PRO A  54 "
        model="   1" pdb=" CD  PRO A  54 "
        model="   1" pdb=" CG  PRO A  54 "
      ideal   model   delta    sigma   weight residual
     103.20  116.97  -13.77 1.50e+00 4.44e-01 8.43e+01
  angle model="   1" pdb=" N   LYS A  10 "
        model="   1" pdb=" CA  LYS A  10 "
        model="   1" pdb=" HA  LYS A  10 "
      ideal   model   delta    sigma   weight residual
     110.00   86.43   23.57 3.00e+00 1.11e-01 6.17e+01
  angle model="   1" pdb=" CA  TYR A  50 "
        model="   1" pdb=" C   TYR A  50 "
        model="   1" pdb=" O   TYR A  50 "
      ideal   model   delta    sigma   weight residual
     120.80  109.13   11.67 1.70e+00 3.46e-01 4.71e+01
  angle model="   1" pdb=" N   SER A  11 "
        model="   1" pdb=" CA  SER A  11 "
        model="   1" pdb=" CB  SER A  11 "
      ideal   model   delta    sigma   weight residual
     110.50  100.34   10.16 1.70e+00 3.46e-01 3.57e+01
  angle model="   1" pdb=" CA  ILE A  30 "
        model="   1" pdb=" CB  ILE A  30 "
        model="   1" pdb=" CG1 ILE A  30 "
      ideal   model   delta    sigma   weight residual
     110.40  120.43  -10.03 1.70e+00 3.46e-01 3.48e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    12.40: 951
       12.40 -    24.80: 57
       24.80 -    37.20: 18
       37.20 -    49.61: 3
       49.61 -    62.01: 3
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" CA  ALA A  48 "
           model="   1" pdb=" C   ALA A  48 "
           model="   1" pdb=" N   GLU A  49 "
           model="   1" pdb=" CA  GLU A  49 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  127.10   52.90     0      5.00e+00 4.00e-02 1.12e+02
  dihedral model="   1" pdb=" N   LYS A  10 "
           model="   1" pdb=" C   LYS A  10 "
           model="   1" pdb=" CA  LYS A  10 "
           model="   1" pdb=" CB  LYS A  10 "
      ideal   model   delta  harmonic     sigma   weight residual
     122.80  145.74  -22.94     0      2.50e+00 1.60e-01 8.42e+01
  dihedral model="   1" pdb=" C   LYS A  10 "
           model="   1" pdb=" N   LYS A  10 "
           model="   1" pdb=" CA  LYS A  10 "
           model="   1" pdb=" CB  LYS A  10 "
      ideal   model   delta  harmonic     sigma   weight residual
    -122.60 -143.36   20.76     0      2.50e+00 1.60e-01 6.89e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.001 -    0.213: 169
       0.213 -    0.426: 5
       0.426 -    0.638: 1
       0.638 -    0.850: 0
       0.850 -    1.063: 1
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  LYS A  10 "
            model="   1" pdb=" N   LYS A  10 "
            model="   1" pdb=" C   LYS A  10 "
            model="   1" pdb=" CB  LYS A  10 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    1.45    1.06 2.00e-01 2.50e+01 2.82e+01
  chirality model="   1" pdb=" CA  PRO A 117 "
            model="   1" pdb=" N   PRO A 117 "
            model="   1" pdb=" C   PRO A 117 "
            model="   1" pdb=" CB  PRO A 117 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.72    2.27    0.45 2.00e-01 2.50e+01 4.98e+00
  chirality model="   1" pdb=" CA  GLU A  49 "
            model="   1" pdb=" N   GLU A  49 "
            model="   1" pdb=" C   GLU A  49 "
            model="   1" pdb=" CB  GLU A  49 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.13    0.39 2.00e-01 2.50e+01 3.71e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  PHE A  15 "    0.603 2.00e-02 2.50e+03   2.72e-01 2.21e+03
        model="   1" pdb=" CG  PHE A  15 "    0.118 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 PHE A  15 "   -0.143 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 PHE A  15 "   -0.123 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 PHE A  15 "   -0.046 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 PHE A  15 "   -0.040 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  PHE A  15 "    0.152 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 PHE A  15 "   -0.373 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 PHE A  15 "   -0.338 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 PHE A  15 "   -0.115 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 PHE A  15 "   -0.106 2.00e-02 2.50e+03
        model="   1" pdb=" HZ  PHE A  15 "    0.410 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  12 "   -0.039 2.00e-02 2.50e+03   3.57e-02 3.81e+01
        model="   1" pdb=" CG  TYR A  12 "    0.010 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  12 "    0.015 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  12 "   -0.004 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  12 "    0.008 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  12 "    0.028 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  12 "    0.002 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  12 "   -0.079 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  12 "    0.023 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  12 "   -0.036 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  12 "    0.007 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  12 "    0.066 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A 105 "   -0.021 2.00e-02 2.50e+03   3.39e-02 3.45e+01
        model="   1" pdb=" CG  TYR A 105 "    0.031 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A 105 "    0.014 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A 105 "    0.010 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A 105 "   -0.024 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A 105 "   -0.018 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A 105 "   -0.017 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A 105 "    0.075 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A 105 "    0.028 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A 105 "    0.015 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A 105 "   -0.054 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A 105 "   -0.038 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.54 -     2.15: 110
        2.15 -     2.76: 4130
        2.76 -     3.38: 5736
        3.38 -     3.99: 6760
        3.99 -     4.60: 10343
  Nonbonded interactions: 27079
  Sorted by model distance:
  nonbonded model="   1" pdb="HH22 ARG A  21 "
            model="   1" pdb="HD22 ASN A  72 "
     model   vdw
     1.540 2.100
  nonbonded model="   1" pdb="HG23 ILE A  30 "
            model="   1" pdb="HD21 LEU A  61 "
     model   vdw
     1.736 2.440
  nonbonded model="   1" pdb=" H   VAL A  18 "
            model="   1" pdb=" HB  VAL A  18 "
     model   vdw
     1.784 2.270
  nonbonded model="   1" pdb=" OE1 GLU A  75 "
            model="   1" pdb=" HZ3 LYS A  79 "
     model   vdw
     1.810 1.850
  nonbonded model="   1" pdb=" O   PRO A  54 "
            model="   1" pdb=" H   ARG A  58 "
     model   vdw
     1.820 1.850
  ... (remaining 27074 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.
  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 82
        1.23 -     1.43: 383
        1.43 -     1.62: 666
        1.62 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" N   PRO A 117 "
       model="   1" pdb=" CD  PRO A 117 "
    ideal  model  delta    sigma   weight residual
    1.473  1.425  0.048 1.40e-02 5.10e+03 1.19e+01
  bond model="   1" pdb=" CE1 HIS A 134 "
       model="   1" pdb=" NE2 HIS A 134 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.18e+01
  bond model="   1" pdb=" CE1 HIS A 138 "
       model="   1" pdb=" NE2 HIS A 138 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.17e+01
  bond model="   1" pdb=" CE1 HIS A 136 "
       model="   1" pdb=" NE2 HIS A 136 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.14e+01
  bond model="   1" pdb=" CE1 HIS A 135 "
       model="   1" pdb=" NE2 HIS A 135 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.13e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       93.90 -   101.49: 15
      101.49 -   109.08: 1041
      109.08 -   116.67: 1979
      116.67 -   124.25: 927
      124.25 -   131.84: 115
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" CA  LYS A 113 "
        model="   1" pdb=" C   LYS A 113 "
        model="   1" pdb=" N   PRO A 114 "
      ideal   model   delta    sigma   weight residual
     116.90  128.17  -11.27 1.50e+00 4.44e-01 5.64e+01
  angle model="   1" pdb=" CA  ILE A  30 "
        model="   1" pdb=" CB  ILE A  30 "
        model="   1" pdb=" CG1 ILE A  30 "
      ideal   model   delta    sigma   weight residual
     110.40  122.68  -12.28 1.70e+00 3.46e-01 5.22e+01
  angle model="   1" pdb=" CA  ASP A 110 "
        model="   1" pdb=" CB  ASP A 110 "
        model="   1" pdb=" CG  ASP A 110 "
      ideal   model   delta    sigma   weight residual
     112.60  119.62   -7.02 1.00e+00 1.00e+00 4.93e+01
  angle model="   1" pdb=" CA  ASP A 116 "
        model="   1" pdb=" C   ASP A 116 "
        model="   1" pdb=" N   PRO A 117 "
      ideal   model   delta    sigma   weight residual
     116.90  125.87   -8.97 1.50e+00 4.44e-01 3.57e+01
  angle model="   1" pdb=" CD1 LEU A   2 "
        model="   1" pdb=" CG  LEU A   2 "
        model="   1" pdb=" CD2 LEU A   2 "
      ideal   model   delta    sigma   weight residual
     110.80   99.18   11.62 2.20e+00 2.07e-01 2.79e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    14.58: 969
       14.58 -    29.16: 44
       29.16 -    43.74: 16
       43.74 -    58.32: 1
       58.32 -    72.90: 2
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" CA  GLU A 120 "
           model="   1" pdb=" C   GLU A 120 "
           model="   1" pdb=" N   GLY A 121 "
           model="   1" pdb=" CA  GLY A 121 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  151.73   28.27     0      5.00e+00 4.00e-02 3.20e+01
  dihedral model="   1" pdb=" N   VAL A  14 "
           model="   1" pdb=" C   VAL A  14 "
           model="   1" pdb=" CA  VAL A  14 "
           model="   1" pdb=" CB  VAL A  14 "
      ideal   model   delta  harmonic     sigma   weight residual
     123.40  137.35  -13.95     0      2.50e+00 1.60e-01 3.12e+01
  dihedral model="   1" pdb=" C   VAL A  14 "
           model="   1" pdb=" N   VAL A  14 "
           model="   1" pdb=" CA  VAL A  14 "
           model="   1" pdb=" CB  VAL A  14 "
      ideal   model   delta  harmonic     sigma   weight residual
    -122.00 -134.90   12.90     0      2.50e+00 1.60e-01 2.66e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.000 -    0.130: 143
       0.130 -    0.261: 27
       0.261 -    0.391: 4
       0.391 -    0.521: 1
       0.521 -    0.651: 1
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CG  LEU A  64 "
            model="   1" pdb=" CB  LEU A  64 "
            model="   1" pdb=" CD1 LEU A  64 "
            model="   1" pdb=" CD2 LEU A  64 "
    both_signs  ideal   model   delta    sigma   weight residual
      False     -2.59   -1.94   -0.65 2.00e-01 2.50e+01 1.06e+01
  chirality model="   1" pdb=" CA  VAL A  14 "
            model="   1" pdb=" N   VAL A  14 "
            model="   1" pdb=" C   VAL A  14 "
            model="   1" pdb=" CB  VAL A  14 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.44    2.03    0.42 2.00e-01 2.50e+01 4.31e+00
  chirality model="   1" pdb=" CA  HIS A 139 "
            model="   1" pdb=" N   HIS A 139 "
            model="   1" pdb=" C   HIS A 139 "
            model="   1" pdb=" CB  HIS A 139 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.12    0.39 2.00e-01 2.50e+01 3.73e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A 111 "   -0.207 2.00e-02 2.50e+03   1.36e-01 5.57e+02
        model="   1" pdb=" CG  TYR A 111 "    0.022 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A 111 "    0.113 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A 111 "    0.002 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A 111 "   -0.079 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A 111 "    0.030 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A 111 "   -0.044 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A 111 "    0.022 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A 111 "    0.305 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A 111 "   -0.029 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A 111 "   -0.232 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A 111 "    0.097 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  91 "   -0.106 2.00e-02 2.50e+03   6.95e-02 1.45e+02
        model="   1" pdb=" CG  TYR A  91 "   -0.017 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  91 "    0.042 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  91 "   -0.005 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  91 "    0.000 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  91 "    0.046 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  91 "   -0.006 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  91 "   -0.125 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  91 "    0.110 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  91 "   -0.032 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  91 "   -0.023 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  91 "    0.115 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  PHE A  45 "    0.130 2.00e-02 2.50e+03   6.94e-02 1.45e+02
        model="   1" pdb=" CG  PHE A  45 "    0.026 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 PHE A  45 "   -0.031 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 PHE A  45 "   -0.021 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 PHE A  45 "   -0.016 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 PHE A  45 "   -0.024 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  PHE A  45 "    0.048 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 PHE A  45 "   -0.080 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 PHE A  45 "   -0.051 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 PHE A  45 "   -0.047 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 PHE A  45 "   -0.072 2.00e-02 2.50e+03
        model="   1" pdb=" HZ  PHE A  45 "    0.139 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.73 -     2.30: 358
        2.30 -     2.88: 5067
        2.88 -     3.45: 5149
        3.45 -     4.03: 6591
        4.03 -     4.60: 9814
  Nonbonded interactions: 26979
  Sorted by model distance:
  nonbonded model="   1" pdb=" OE2 GLU A  55 "
            model="   1" pdb="HH21 ARG A  58 "
     model   vdw
     1.728 1.850
  nonbonded model="   1" pdb=" OE1 GLU A  55 "
            model="   1" pdb=" HE  ARG A  58 "
     model   vdw
     1.764 1.850
  nonbonded model="   1" pdb=" OE1 GLU A   8 "
            model="   1" pdb="HH11 ARG A  58 "
     model   vdw
     1.804 1.850
  nonbonded model="   1" pdb="HH12 ARG A  21 "
            model="   1" pdb=" OD2 ASP A  29 "
     model   vdw
     1.841 1.850
  nonbonded model="   1" pdb="HE21 GLN A  28 "
            model="   1" pdb=" OE2 GLU A  32 "
     model   vdw
     1.854 1.850
  ... (remaining 26974 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000 (Z=  0.000)
  Max. delta:    0.051 (Z=  3.615)
  Mean delta:    0.017 (Z=  0.880)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 101  LYS  CA
   A 101  LYS  C
   A 102  PRO  N         116.90   126.33    -9.43  1.50e+00  3.95e+01   6.3*sigma
   A  61  LEU  CD1
   A  61  LEU  CG
   A  61  LEU  CD2       110.80    99.85    10.95  2.20e+00  2.48e+01   5.0*sigma
   A 120  GLU  CA
   A 120  GLU  C
   A 121  GLY  N         116.20   125.64    -9.44  2.00e+00  2.23e+01   4.7*sigma
   A 134  HIS  ND1
   A 134  HIS  CG
   A 134  HIS  CD2       106.10   110.79    -4.69  1.00e+00  2.20e+01   4.7*sigma
   A  95  ASP  N
   A  95  ASP  CA
   A  95  ASP  CB        110.50   118.45    -7.95  1.70e+00  2.19e+01   4.7*sigma
   A 138  HIS  ND1
   A 138  HIS  CG
   A 138  HIS  CD2       106.10   110.65    -4.55  1.00e+00  2.07e+01   4.5*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   110.64    -4.54  1.00e+00  2.06e+01   4.5*sigma
   A 134  HIS  N
   A 134  HIS  CA
   A 134  HIS  CB        110.50   118.14    -7.64  1.70e+00  2.02e+01   4.5*sigma
   A  43  HIS  ND1
   A  43  HIS  CG
   A  43  HIS  CD2       106.10   110.55    -4.45  1.00e+00  1.98e+01   4.5*sigma
   A 136  HIS  ND1
   A 136  HIS  CG
   A 136  HIS  CD2       106.10   110.54    -4.44  1.00e+00  1.97e+01   4.4*sigma
   A 120  GLU  O
   A 120  GLU  C
   A 121  GLY  N         123.00   116.15     6.85  1.60e+00  1.83e+01   4.3*sigma
   A  98  SER  N
   A  98  SER  CA
   A  98  SER  CB        110.50   117.75    -7.25  1.70e+00  1.82e+01   4.3*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.31    -4.21  1.00e+00  1.77e+01   4.2*sigma
   A  21  ARG  CA
   A  21  ARG  C
   A  22  PRO  N         116.90   123.10    -6.20  1.50e+00  1.71e+01   4.1*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.23    -4.13  1.00e+00  1.71e+01   4.1*sigma
   A  43  HIS  N
   A  43  HIS  CA
   A  43  HIS  CB        110.50   117.39    -6.89  1.70e+00  1.64e+01   4.1*sigma

  Min. delta:    0.000 (Z=  0.000)
  Max. delta:   10.950 (Z=  6.287)
  Mean delta:    2.351 (Z=  1.297)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  73  GLY  CA
   A  73  GLY  C
   A  74  ASP  N
   A  74  ASP  CA        180.00   140.90    39.10  5.00e+00  6.11e+01   7.8*sigma
   A  44  ASP  CA
   A  44  ASP  C
   A  45  PHE  N
   A  45  PHE  CA        180.00   155.33    24.67  5.00e+00  2.43e+01   4.9*sigma
   A 125  LYS  CA
   A 125  LYS  C
   A 126  VAL  N
   A 126  VAL  CA        180.00   156.34    23.66  5.00e+00  2.24e+01   4.7*sigma

  Min. delta:    0.001
  Max. delta:   56.991
  Mean delta:   10.865

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.001
  Max. delta:    0.524
  Mean delta:    0.140

                       ----------Planar groups----------                       

  atoms                 rms_deltas   delta_max    residual   deviation
   A  81  TYR  CB
   A  81  TYR  CG
   A  81  TYR  CD1
   A  81  TYR  CD2
   A  81  TYR  CE1
   A  81  TYR  CE2
   A  81  TYR  CZ
   A  81  TYR  OH            0.075       0.142      112.99   7.1*sigma
   A  15  PHE  CB
   A  15  PHE  CG
   A  15  PHE  CD1
   A  15  PHE  CD2
   A  15  PHE  CE1
   A  15  PHE  CE2
   A  15  PHE  CZ            0.059       0.105       60.18   5.2*sigma

  Min. delta:    0.000
  Max. delta:    0.075
  Mean delta:    0.014

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

                       ----------Angle outliers----------                      

   A  90  SER  HA , Angle N-CA-HA, observed: 97.941, delta from target: 12.059
   A  78  ILE  HA , Angle N-CA-HA, observed: 97.592, delta from target: 12.408
   A  98  SER  HA , Angle N-CA-HA, observed: 96.989, delta from target: 13.011

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.012   0.051   2241  Z= 0.627
    Angle     :  2.106  13.011   4077  Z= 0.946
    Chirality :  0.140   0.524    176
    Planarity :  0.012   0.104    326
    Dihedral  : 10.032  59.887    768
    Min Nonbonded Distance : 1.618
  
  Molprobity Statistics.
    All-atom Clashscore : 4.06
    Ramachandran Plot:
      Outliers :  7.30 %
      Allowed  : 13.14 %
      Favored  : 79.56 %
    Rotamer:
      Outliers :  0.00 %
      Allowed  :  1.61 %
      Favored  : 98.39 %
    Cbeta Deviations :  4.55 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.00 %
      Twisted Proline : 0.00 %
      Twisted General : 0.76 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -1.91 (0.70), residues: 137
    helix:  1.05 (0.64), residues: 64
    sheet:  None (None), residues: 0
    loop : -3.70 (0.63), residues: 73
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.005   0.002   HIS A 139 
   PHE   0.232   0.045   PHE A  15 
   TYR   0.181   0.024   TYR A  81 
   ARG   0.066   0.013   ARG A  58 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.005   0.002   HIS A 139 
   PHE   0.105   0.033   PHE A  15 
   TYR   0.142   0.023   TYR A  81 
   ARG   0.040   0.008   ARG A  58 

                     ----------Asn/Gln/His flips----------                     

  No backwards Asn/Gln/His sidechains found.

=================================== Summary ===================================

  Ramachandran outliers =   7.30 %
                favored =  79.56 %
  Rotamer outliers      =   0.00 %
  C-beta deviations     =     6
  Clashscore            =   4.06
  RMS(bonds)            =   0.0118
  RMS(angles)           =   2.11
  MolProbity score      =   1.93

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py

End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000 (Z=  0.001)
  Max. delta:    0.073 (Z=  3.626)
  Mean delta:    0.018 (Z=  0.940)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  98  SER  C
   A  98  SER  CA
   A  98  SER  CB        110.10    97.97    12.13  1.90e+00  4.08e+01   6.4*sigma
   A  30  ILE  CA
   A  30  ILE  CB
   A  30  ILE  CG1       110.40   120.26    -9.86  1.70e+00  3.36e+01   5.8*sigma
   A 101  LYS  CA
   A 101  LYS  C
   A 102  PRO  N         116.90   125.37    -8.47  1.50e+00  3.19e+01   5.6*sigma
   A  61  LEU  C
   A  61  LEU  CA
   A  61  LEU  CB        110.10    99.55    10.55  1.90e+00  3.08e+01   5.6*sigma
   A  15  PHE  CA
   A  15  PHE  CB
   A  15  PHE  CG        113.80   108.44     5.36  1.00e+00  2.87e+01   5.4*sigma
   A  52  PRO  N
   A  52  PRO  CA
   A  52  PRO  C         112.10   125.44   -13.34  2.50e+00  2.85e+01   5.3*sigma
   A  92  THR  CA
   A  92  THR  CB
   A  92  THR  CG2       110.50   119.16    -8.66  1.70e+00  2.59e+01   5.1*sigma
   A  93  LEU  N
   A  93  LEU  CA
   A  93  LEU  CB        110.50   119.03    -8.53  1.70e+00  2.52e+01   5.0*sigma
   A  92  THR  CA
   A  92  THR  C
   A  92  THR  O         120.80   112.41     8.39  1.70e+00  2.44e+01   4.9*sigma
   A   2  LEU  CB
   A   2  LEU  CG
   A   2  LEU  CD1       110.70   125.31   -14.61  3.00e+00  2.37e+01   4.9*sigma
   A  86  ILE  CA
   A  86  ILE  CB
   A  86  ILE  CG2       110.50   118.55    -8.05  1.70e+00  2.24e+01   4.7*sigma
   A  86  ILE  C
   A  87  GLY  N
   A  87  GLY  CA        121.70   130.22    -8.52  1.80e+00  2.24e+01   4.7*sigma
   A  58  ARG  NE
   A  58  ARG  CZ
   A  58  ARG  NH2       119.20   123.43    -4.23  9.00e-01  2.21e+01   4.7*sigma
   A  97  SER  CA
   A  97  SER  CB
   A  97  SER  OG        111.10   120.47    -9.37  2.00e+00  2.20e+01   4.7*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.75    -4.65  1.00e+00  2.16e+01   4.6*sigma
   A  37  ILE  CA
   A  37  ILE  C
   A  38  ILE  N         116.20   125.37    -9.17  2.00e+00  2.10e+01   4.6*sigma
   A  92  THR  CA
   A  92  THR  C
   A  93  LEU  N         116.20   125.35    -9.15  2.00e+00  2.09e+01   4.6*sigma
   A  76  SER  N
   A  76  SER  CA
   A  76  SER  CB        110.50   102.78     7.72  1.70e+00  2.06e+01   4.5*sigma
   A 134  HIS  ND1
   A 134  HIS  CG
   A 134  HIS  CD2       106.10   110.54    -4.44  1.00e+00  1.97e+01   4.4*sigma
   A  92  THR  N
   A  92  THR  CA
   A  92  THR  C         111.00    98.65    12.35  2.80e+00  1.95e+01   4.4*sigma
   A 136  HIS  ND1
   A 136  HIS  CG
   A 136  HIS  CD2       106.10   110.51    -4.41  1.00e+00  1.95e+01   4.4*sigma
   A   9  LEU  C
   A   9  LEU  CA
   A   9  LEU  CB        110.10   101.91     8.19  1.90e+00  1.86e+01   4.3*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.41    -4.31  1.00e+00  1.86e+01   4.3*sigma
   A  37  ILE  CA
   A  37  ILE  CB
   A  37  ILE  CG1       110.40   117.67    -7.27  1.70e+00  1.83e+01   4.3*sigma
   A 122  ILE  CA
   A 122  ILE  C
   A 123  GLU  N         116.20   124.73    -8.53  2.00e+00  1.82e+01   4.3*sigma
   A  86  ILE  C
   A  86  ILE  CA
   A  86  ILE  CB        111.60   120.10    -8.50  2.00e+00  1.81e+01   4.2*sigma
   A 138  HIS  ND1
   A 138  HIS  CG
   A 138  HIS  CD2       106.10   110.31    -4.21  1.00e+00  1.78e+01   4.2*sigma
   A 139  HIS  ND1
   A 139  HIS  CE1
   A 139  HIS  NE2       108.40   112.52    -4.12  1.00e+00  1.70e+01   4.1*sigma
   A  62  LEU  CD1
   A  62  LEU  CG
   A  62  LEU  CD2       110.80   101.84     8.96  2.20e+00  1.66e+01   4.1*sigma
   A  78  ILE  CB
   A  78  ILE  CG1
   A  78  ILE  CD1       113.80   122.35    -8.55  2.10e+00  1.66e+01   4.1*sigma
   A  97  SER  N
   A  97  SER  CA
   A  97  SER  CB        110.50   117.41    -6.91  1.70e+00  1.65e+01   4.1*sigma
   A 101  LYS  O
   A 101  LYS  C
   A 102  PRO  N         123.00   116.54     6.46  1.60e+00  1.63e+01   4.0*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   110.12    -4.02  1.00e+00  1.61e+01   4.0*sigma

  Min. delta:    0.003 (Z=  0.002)
  Max. delta:   14.608 (Z=  6.385)
  Mean delta:    2.797 (Z=  1.481)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 117  PRO  CA
   A 117  PRO  C
   A 118  ASP  N
   A 118  ASP  CA        180.00   145.47    34.53  5.00e+00  4.77e+01   6.9*sigma
   A 119  LEU  CA
   A 119  LEU  C
   A 120  GLU  N
   A 120  GLU  CA        180.00   150.42    29.58  5.00e+00  3.50e+01   5.9*sigma
   A 130  SER  CA
   A 130  SER  C
   A 131  ILE  N
   A 131  ILE  CA        180.00   153.75    26.25  5.00e+00  2.76e+01   5.2*sigma
   A  92  THR  CA
   A  92  THR  C
   A  93  LEU  N
   A  93  LEU  CA        180.00   156.03    23.97  5.00e+00  2.30e+01   4.8*sigma
   A 129  ARG  CA
   A 129  ARG  C
   A 130  SER  N
   A 130  SER  CA        180.00   157.20    22.80  5.00e+00  2.08e+01   4.6*sigma
   A  51  ILE  CA
   A  51  ILE  C
   A  52  PRO  N
   A  52  PRO  CA        180.00  -159.08   -20.92  5.00e+00  1.75e+01   4.2*sigma
   A 128  MET  CA
   A 128  MET  C
   A 129  ARG  N
   A 129  ARG  CA        180.00   159.45    20.55  5.00e+00  1.69e+01   4.1*sigma

  Min. delta:    0.025
  Max. delta:   90.197
  Mean delta:   12.636

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.647
  Mean delta:    0.156

                       ----------Planar groups----------                       

  atoms                 rms_deltas   delta_max    residual   deviation
   A  89  TYR  CB
   A  89  TYR  CG
   A  89  TYR  CD1
   A  89  TYR  CD2
   A  89  TYR  CE1
   A  89  TYR  CE2
   A  89  TYR  CZ
   A  89  TYR  OH            0.130       0.224      338.18  11.2*sigma

  Min. delta:    0.000
  Max. delta:    0.130
  Mean delta:    0.019

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

                       ----------Angle outliers----------                      

   A   2  LEU  HG , Angle CB-CG-HG, observed: 96.504, delta from target: 12.496
   A  62  LEU  HG , Angle CD1-CG-HG, observed: 121.518, delta from target: -13.518
   A  52  PRO  HA , Angle C-CA-HA, observed: 92.743, delta from target: 16.257
   A  93  LEU  HA , Angle N-CA-HA, observed: 93.366, delta from target: 16.634

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.013   0.073   2241  Z= 0.669
    Angle     :  2.442  16.634   4077  Z= 1.078
    Chirality :  0.156   0.647    176
    Planarity :  0.016   0.127    326
    Dihedral  : 11.594  90.197    768
    Min Nonbonded Distance : 1.702
  
  Molprobity Statistics.
    All-atom Clashscore : 16.69
    Ramachandran Plot:
      Outliers :  7.30 %
      Allowed  :  8.76 %
      Favored  : 83.94 %
    Rotamer:
      Outliers :  1.61 %
      Allowed  :  2.42 %
      Favored  : 95.97 %
    Cbeta Deviations :  5.30 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.00 %
      Twisted Proline : 0.00 %
      Twisted General : 0.76 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -2.37 (0.67), residues: 137
    helix:  0.19 (0.57), residues: 78
    sheet:  None (None), residues: 0
    loop : -4.26 (0.62), residues: 59
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.009   0.002   HIS A 138 
   PHE   0.181   0.046   PHE A  67 
   TYR   0.275   0.031   TYR A  89 
   ARG   0.058   0.008   ARG A  58 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.009   0.002   HIS A 138 
   PHE   0.083   0.032   PHE A  45 
   TYR   0.224   0.029   TYR A  89 
   ARG   0.035   0.005   ARG A  58 

                     ----------Asn/Gln/His flips----------                     

   A  66  GLN
   A  43  HIS

=================================== Summary ===================================


End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000 (Z=  0.000)
  Max. delta:    0.061 (Z=  3.966)
  Mean delta:    0.017 (Z=  0.892)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  30  ILE  CA
   A  30  ILE  CB
   A  30  ILE  CG1       110.40   129.41   -19.01  1.70e+00  1.25e+02  11.2*sigma
   A  95  ASP  CA
   A  95  ASP  CB
   A  95  ASP  CG        112.60   104.33     8.27  1.00e+00  6.85e+01   8.3*sigma
   A 100  GLN  O
   A 100  GLN  C
   A 101  LYS  N         123.00   113.08     9.92  1.60e+00  3.84e+01   6.2*sigma
   A  29  ASP  CA
   A  29  ASP  CB
   A  29  ASP  CG        112.60   107.07     5.53  1.00e+00  3.06e+01   5.5*sigma
   A   2  LEU  CB
   A   2  LEU  CG
   A   2  LEU  CD1       110.70   126.60   -15.90  3.00e+00  2.81e+01   5.3*sigma
   A 113  LYS  CA
   A 113  LYS  C
   A 114  PRO  N         116.90   123.62    -6.72  1.50e+00  2.01e+01   4.5*sigma
   A  43  HIS  ND1
   A  43  HIS  CG
   A  43  HIS  CD2       106.10   110.55    -4.45  1.00e+00  1.98e+01   4.4*sigma
   A  78  ILE  C
   A  79  LYS  N
   A  79  LYS  CA        121.70   129.67    -7.97  1.80e+00  1.96e+01   4.4*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   110.44    -4.34  1.00e+00  1.88e+01   4.3*sigma
   A 102  PRO  C
   A 103  ASP  N
   A 103  ASP  CA        121.70   129.38    -7.68  1.80e+00  1.82e+01   4.3*sigma
   A 102  PRO  N
   A 102  PRO  CD
   A 102  PRO  CG        103.20   109.49    -6.29  1.50e+00  1.76e+01   4.2*sigma
   A  62  LEU  CD1
   A  62  LEU  CG
   A  62  LEU  CD2       110.80   101.58     9.22  2.20e+00  1.76e+01   4.2*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.24    -4.14  1.00e+00  1.72e+01   4.1*sigma
   A   2  LEU  N
   A   2  LEU  CA
   A   2  LEU  CB        110.50   103.54     6.96  1.70e+00  1.68e+01   4.1*sigma
   A 126  VAL  CA
   A 126  VAL  CB
   A 126  VAL  CG2       110.40   103.53     6.87  1.70e+00  1.63e+01   4.0*sigma
   A  53  LEU  CA
   A  53  LEU  C
   A  54  PRO  N         116.90   122.93    -6.03  1.50e+00  1.62e+01   4.0*sigma
   A 136  HIS  ND1
   A 136  HIS  CG
   A 136  HIS  CD2       106.10   110.11    -4.01  1.00e+00  1.60e+01   4.0*sigma

  Min. delta:    0.001 (Z=  0.000)
  Max. delta:   19.009 (Z= 11.182)
  Mean delta:    2.424 (Z=  1.343)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 126  VAL  CA
   A 126  VAL  C
   A 127  ARG  N
   A 127  ARG  CA        180.00   158.43    21.57  5.00e+00  1.86e+01   4.3*sigma
   A 101  LYS  CA
   A 101  LYS  C
   A 102  PRO  N
   A 102  PRO  CA        180.00  -158.64   -21.36  5.00e+00  1.82e+01   4.3*sigma
   A  99  LEU  CA
   A  99  LEU  C
   A 100  GLN  N
   A 100  GLN  CA        180.00   159.03    20.97  5.00e+00  1.76e+01   4.2*sigma
   A  74  ASP  CA
   A  74  ASP  C
   A  75  GLU  N
   A  75  GLU  CA        180.00   159.31    20.69  5.00e+00  1.71e+01   4.1*sigma
   A  97  SER  CA
   A  97  SER  C
   A  98  SER  N
   A  98  SER  CA        180.00   159.78    20.22  5.00e+00  1.63e+01   4.0*sigma

  Min. delta:    0.008
  Max. delta:   76.993
  Mean delta:   11.262

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.740
  Mean delta:    0.122

                       ----------Planar groups----------                       

  atoms                 rms_deltas   delta_max    residual   deviation
   A 111  TYR  CB
   A 111  TYR  CG
   A 111  TYR  CD1
   A 111  TYR  CD2
   A 111  TYR  CE1
   A 111  TYR  CE2
   A 111  TYR  CZ
   A 111  TYR  OH            0.050       0.099       49.53   4.9*sigma
   A  12  TYR  CB
   A  12  TYR  CG
   A  12  TYR  CD1
   A  12  TYR  CD2
   A  12  TYR  CE1
   A  12  TYR  CE2
   A  12  TYR  CZ
   A  12  TYR  OH            0.057       0.090       65.07   4.5*sigma

  Min. delta:    0.000
  Max. delta:    0.077
  Mean delta:    0.015

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

                       ----------Angle outliers----------                      

   A 102  PRO  HA , Angle C-CA-HA, observed: 96.687, delta from target: 12.313
   A  30  ILE  HB , Angle CG2-CB-HB, observed: 122.734, delta from target: -13.734
   A   2  LEU  HG , Angle CD2-CG-HG, observed: 122.916, delta from target: -14.916
   A  30  ILE  HB , Angle CA-CB-HB, observed: 87.467, delta from target: 21.533

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.012   0.061   2241  Z= 0.635
    Angle     :  2.171  21.533   4077  Z= 0.979
    Chirality :  0.122   0.740    176
    Planarity :  0.013   0.082    326
    Dihedral  : 10.024  76.993    768
    Min Nonbonded Distance : 1.720
  
  Molprobity Statistics.
    All-atom Clashscore : 9.92
    Ramachandran Plot:
      Outliers :  3.65 %
      Allowed  :  5.84 %
      Favored  : 90.51 %
    Rotamer:
      Outliers :  0.00 %
      Allowed  :  2.42 %
      Favored  : 97.58 %
    Cbeta Deviations :  1.52 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.00 %
      Twisted Proline : 0.00 %
      Twisted General : 0.00 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole:  0.16 (0.73), residues: 137
    helix:  1.02 (0.62), residues: 56
    sheet: -1.96 (1.06), residues: 10
    loop : -0.23 (0.86), residues: 71
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.003   0.001   HIS A 134 
   PHE   0.121   0.024   PHE A  15 
   TYR   0.173   0.027   TYR A  12 
   ARG   0.037   0.007   ARG A 129 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.003   0.001   HIS A 134 
   PHE   0.040   0.011   PHE A  15 
   TYR   0.104   0.022   TYR A  12 
   ARG   0.016   0.002   ARG A  58 

                     ----------Asn/Gln/His flips----------                     

  No backwards Asn/Gln/His sidechains found.

=================================== Summary ===================================

  Ramachandran outliers =   7.30 %
                favored =  83.94 %
  Rotamer outliers      =   1.61 %
  C-beta deviations     =     7
  Clashscore            =  16.69
  RMS(bonds)            =   0.0129
  RMS(angles)           =   2.44
  MolProbity score      =   2.56

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py

End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  atoms                 ideal   model   delta   sigma   slack  residual   deviation
   A  96  GLY  CA
   A  96  GLY  C           1.52     1.44     0.07  1.80e-02  1.60e+01   4.0*sigma

  Min. delta:    0.000 (Z=  0.000)
  Max. delta:    0.072 (Z=  4.004)
  Mean delta:    0.017 (Z=  0.886)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 113  LYS  CA
   A 113  LYS  C
   A 114  PRO  N         116.90   124.86    -7.96  1.50e+00  2.81e+01   5.3*sigma
   A  95  ASP  CA
   A  95  ASP  CB
   A  95  ASP  CG        112.60   117.87    -5.27  1.00e+00  2.78e+01   5.3*sigma
   A 116  ASP  CA
   A 116  ASP  C
   A 117  PRO  N         116.90   124.60    -7.70  1.50e+00  2.63e+01   5.1*sigma
   A  53  LEU  CA
   A  53  LEU  C
   A  54  PRO  N         116.90   124.54    -7.64  1.50e+00  2.59e+01   5.1*sigma
   A 136  HIS  ND1
   A 136  HIS  CG
   A 136  HIS  CD2       106.10   110.77    -4.67  1.00e+00  2.18e+01   4.7*sigma
   A 101  LYS  CA
   A 101  LYS  C
   A 102  PRO  N         116.90   123.83    -6.93  1.50e+00  2.14e+01   4.6*sigma
   A 134  HIS  ND1
   A 134  HIS  CG
   A 134  HIS  CD2       106.10   110.60    -4.50  1.00e+00  2.02e+01   4.5*sigma
   A  43  HIS  ND1
   A  43  HIS  CG
   A  43  HIS  CD2       106.10   110.54    -4.44  1.00e+00  1.97e+01   4.4*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.52    -4.42  1.00e+00  1.95e+01   4.4*sigma
   A 138  HIS  ND1
   A 138  HIS  CG
   A 138  HIS  CD2       106.10   110.48    -4.38  1.00e+00  1.92e+01   4.4*sigma
   A  88  ASP  CA
   A  88  ASP  CB
   A  88  ASP  CG        112.60   116.90    -4.30  1.00e+00  1.84e+01   4.3*sigma
   A  77  ILE  N
   A  77  ILE  CA
   A  77  ILE  CB        111.50   104.52     6.98  1.70e+00  1.69e+01   4.1*sigma
   A 115  ALA  N
   A 115  ALA  CA
   A 115  ALA  CB        110.40   116.55    -6.15  1.50e+00  1.68e+01   4.1*sigma
   A  61  LEU  CD1
   A  61  LEU  CG
   A  61  LEU  CD2       110.80   101.84     8.96  2.20e+00  1.66e+01   4.1*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.17    -4.07  1.00e+00  1.66e+01   4.1*sigma
   A  43  HIS  C
   A  43  HIS  CA
   A  43  HIS  CB        110.10   102.40     7.70  1.90e+00  1.64e+01   4.1*sigma

  Min. delta:    0.001 (Z=  0.001)
  Max. delta:    9.242 (Z=  5.305)
  Mean delta:    2.279 (Z=  1.264)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 136  HIS  CA
   A 136  HIS  C
   A 137  HIS  N
   A 137  HIS  CA        180.00   116.16    63.84  5.00e+00  1.63e+02  12.8*sigma
   A 135  HIS  CA
   A 135  HIS  C
   A 136  HIS  N
   A 136  HIS  CA        180.00   149.44    30.56  5.00e+00  3.74e+01   6.1*sigma
   A 122  ILE  CA
   A 122  ILE  C
   A 123  GLU  N
   A 123  GLU  CA        180.00   151.12    28.88  5.00e+00  3.34e+01   5.8*sigma
   A 119  LEU  CA
   A 119  LEU  C
   A 120  GLU  N
   A 120  GLU  CA        180.00   152.10    27.90  5.00e+00  3.11e+01   5.6*sigma
   A 120  GLU  CA
   A 120  GLU  C
   A 121  GLY  N
   A 121  GLY  CA        180.00   152.46    27.54  5.00e+00  3.03e+01   5.5*sigma
   A 115  ALA  CA
   A 115  ALA  C
   A 116  ASP  N
   A 116  ASP  CA        180.00   157.39    22.61  5.00e+00  2.04e+01   4.5*sigma
   A 116  ASP  CA
   A 116  ASP  C
   A 117  PRO  N
   A 117  PRO  CA        180.00   157.48    22.52  5.00e+00  2.03e+01   4.5*sigma
   A 138  HIS  CA
   A 138  HIS  C
   A 139  HIS  N
   A 139  HIS  CA        180.00   158.03    21.97  5.00e+00  1.93e+01   4.4*sigma
   A 134  HIS  CA
   A 134  HIS  C
   A 135  HIS  N
   A 135  HIS  CA        180.00   159.00    21.00  5.00e+00  1.76e+01   4.2*sigma
   A  93  LEU  CA
   A  93  LEU  C
   A  94  GLY  N
   A  94  GLY  CA        180.00   159.01    20.99  5.00e+00  1.76e+01   4.2*sigma
   A 117  PRO  CA
   A 117  PRO  C
   A 118  ASP  N
   A 118  ASP  CA        180.00   159.43    20.57  5.00e+00  1.69e+01   4.1*sigma
   A  92  THR  CA
   A  92  THR  C
   A  93  LEU  N
   A  93  LEU  CA        180.00   159.84    20.16  5.00e+00  1.63e+01   4.0*sigma

  Min. delta:    0.059
  Max. delta:   74.216
  Mean delta:   10.973

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.564
  Mean delta:    0.106

                       ----------Planar groups----------                       

  atoms                 rms_deltas   delta_max    residual   deviation
   A  68  TYR  CB
   A  68  TYR  CG
   A  68  TYR  CD1
   A  68  TYR  CD2
   A  68  TYR  CE1
   A  68  TYR  CE2
   A  68  TYR  CZ
   A  68  TYR  OH            0.081       0.139      131.95   6.9*sigma

  Min. delta:    0.000
  Max. delta:    0.081
  Mean delta:    0.014

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

                       ----------Angle outliers----------                      

   A  97  SER  HA , Angle N-CA-HA, observed: 95.910, delta from target: 14.090

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.012   0.072   2241  Z= 0.631
    Angle     :  2.014  14.090   4077  Z= 0.914
    Chirality :  0.106   0.564    176
    Planarity :  0.012   0.120    326
    Dihedral  :  9.779  74.216    768
    Min Nonbonded Distance : 1.551
  
  Molprobity Statistics.
    All-atom Clashscore : 3.16
    Ramachandran Plot:
      Outliers :  5.84 %
      Allowed  : 10.95 %
      Favored  : 83.21 %
    Rotamer:
      Outliers :  0.00 %
      Allowed  :  1.61 %
      Favored  : 98.39 %
    Cbeta Deviations :  0.76 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.00 %
      Twisted Proline : 0.00 %
      Twisted General : 1.53 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -1.32 (0.71), residues: 137
    helix:  1.57 (0.62), residues: 63
    sheet:  None (None), residues: 0
    loop : -3.35 (0.65), residues: 74
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.005   0.002   HIS A 139 
   PHE   0.022   0.007   PHE A  67 
   TYR   0.270   0.024   TYR A  68 
   ARG   0.047   0.007   ARG A  58 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.005   0.002   HIS A 139 
   PHE   0.021   0.006   PHE A  67 
   TYR   0.139   0.019   TYR A  68 
   ARG   0.001   0.000   ARG A 127 

                     ----------Asn/Gln/His flips----------                     

   A 135  HIS

=================================== Summary ===================================

  Ramachandran outliers =   3.65 %
                favored =  90.51 %
  Rotamer outliers      =   0.00 %
  C-beta deviations     =     2
  Clashscore            =   9.92
  RMS(bonds)            =   0.0120
  RMS(angles)           =   2.17
  MolProbity score      =   2.05

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py

End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000 (Z=  0.000)
  Max. delta:    0.063 (Z=  3.449)
  Mean delta:    0.016 (Z=  0.846)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 113  LYS  CA
   A 113  LYS  C
   A 114  PRO  N         116.90   128.17   -11.27  1.50e+00  5.64e+01   7.5*sigma
   A  30  ILE  CA
   A  30  ILE  CB
   A  30  ILE  CG1       110.40   122.68   -12.28  1.70e+00  5.22e+01   7.2*sigma
   A 110  ASP  CA
   A 110  ASP  CB
   A 110  ASP  CG        112.60   119.62    -7.02  1.00e+00  4.93e+01   7.0*sigma
   A 116  ASP  CA
   A 116  ASP  C
   A 117  PRO  N         116.90   125.87    -8.97  1.50e+00  3.57e+01   6.0*sigma
   A   2  LEU  CD1
   A   2  LEU  CG
   A   2  LEU  CD2       110.80    99.18    11.62  2.20e+00  2.79e+01   5.3*sigma
   A   2  LEU  CB
   A   2  LEU  CG
   A   2  LEU  CD1       110.70   126.40   -15.70  3.00e+00  2.74e+01   5.2*sigma
   A  99  LEU  C
   A 100  GLN  N
   A 100  GLN  CA        121.70   131.11    -9.41  1.80e+00  2.73e+01   5.2*sigma
   A  14  VAL  CA
   A  14  VAL  CB
   A  14  VAL  CG1       110.40   118.83    -8.43  1.70e+00  2.46e+01   5.0*sigma
   A 113  LYS  O
   A 113  LYS  C
   A 114  PRO  N         123.00   115.80     7.20  1.60e+00  2.03e+01   4.5*sigma
   A 136  HIS  ND1
   A 136  HIS  CG
   A 136  HIS  CD2       106.10   110.55    -4.45  1.00e+00  1.98e+01   4.4*sigma
   A 138  HIS  ND1
   A 138  HIS  CG
   A 138  HIS  CD2       106.10   110.46    -4.36  1.00e+00  1.90e+01   4.4*sigma
   A 134  HIS  ND1
   A 134  HIS  CG
   A 134  HIS  CD2       106.10   110.45    -4.35  1.00e+00  1.90e+01   4.4*sigma
   A   8  GLU  CB
   A   8  GLU  CG
   A   8  GLU  CD        112.60   105.21     7.39  1.70e+00  1.89e+01   4.3*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.36    -4.26  1.00e+00  1.82e+01   4.3*sigma
   A 116  ASP  O
   A 116  ASP  C
   A 117  PRO  N         123.00   116.28     6.72  1.60e+00  1.76e+01   4.2*sigma
   A  75  GLU  C
   A  76  SER  N
   A  76  SER  CA        121.70   129.07    -7.37  1.80e+00  1.68e+01   4.1*sigma
   A  61  LEU  CD1
   A  61  LEU  CG
   A  61  LEU  CD2       110.80   101.79     9.01  2.20e+00  1.68e+01   4.1*sigma
   A 109  LYS  C
   A 110  ASP  N
   A 110  ASP  CA        121.70   129.03    -7.33  1.80e+00  1.66e+01   4.1*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   110.16    -4.06  1.00e+00  1.65e+01   4.1*sigma
   A  43  HIS  ND1
   A  43  HIS  CG
   A  43  HIS  CD2       106.10   110.16    -4.06  1.00e+00  1.64e+01   4.1*sigma
   A  14  VAL  N
   A  14  VAL  CA
   A  14  VAL  CB        111.50   118.32    -6.82  1.70e+00  1.61e+01   4.0*sigma

  Min. delta:    0.001 (Z=  0.001)
  Max. delta:   15.702 (Z=  7.513)
  Mean delta:    2.432 (Z=  1.323)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 120  GLU  CA
   A 120  GLU  C
   A 121  GLY  N
   A 121  GLY  CA        180.00   151.73    28.27  5.00e+00  3.20e+01   5.7*sigma
   A 138  HIS  CA
   A 138  HIS  C
   A 139  HIS  N
   A 139  HIS  CA        180.00   159.57    20.43  5.00e+00  1.67e+01   4.1*sigma
   A  21  ARG  CA
   A  21  ARG  C
   A  22  PRO  N
   A  22  PRO  CA        180.00   159.70    20.30  5.00e+00  1.65e+01   4.1*sigma

  Min. delta:    0.020
  Max. delta:   54.400
  Mean delta:   10.475

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.651
  Mean delta:    0.119

                       ----------Planar groups----------                       

  atoms                 rms_deltas   delta_max    residual   deviation
   A 111  TYR  CB
   A 111  TYR  CG
   A 111  TYR  CD1
   A 111  TYR  CD2
   A 111  TYR  CE1
   A 111  TYR  CE2
   A 111  TYR  CZ
   A 111  TYR  OH            0.082       0.146      134.55   7.3*sigma

  Min. delta:    0.000
  Max. delta:    0.115
  Mean delta:    0.016

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

                       ----------Angle outliers----------                      

   A  30  ILE  HB , Angle CG2-CB-HB, observed: 121.009, delta from target: -12.009
   A  64  LEU  HG , Angle CB-CG-HG, observed: 96.919, delta from target: 12.081
   A   2  LEU  HG , Angle CB-CG-HG, observed: 93.899, delta from target: 15.101
   A   2  LEU  HG , Angle CD2-CG-HG, observed: 123.573, delta from target: -15.573

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.011   0.063   2241  Z= 0.602
    Angle     :  2.163  15.702   4077  Z= 0.965
    Chirality :  0.119   0.651    176
    Planarity :  0.015   0.136    326
    Dihedral  :  9.635  72.899    768
    Min Nonbonded Distance : 1.728
  
  Molprobity Statistics.
    All-atom Clashscore : 3.16
    Ramachandran Plot:
      Outliers :  4.38 %
      Allowed  : 10.95 %
      Favored  : 84.67 %
    Rotamer:
      Outliers :  1.61 %
      Allowed  :  0.81 %
      Favored  : 97.58 %
    Cbeta Deviations :  2.27 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.00 %
      Twisted Proline : 0.00 %
      Twisted General : 0.00 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -0.56 (0.75), residues: 137
    helix:  1.57 (0.64), residues: 65
    sheet:  0.74 (1.71), residues: 12
    loop : -3.03 (0.78), residues: 60
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.005   0.001   HIS A 139 
   PHE   0.093   0.024   PHE A  45 
   TYR   0.305   0.033   TYR A 111 
   ARG   0.021   0.005   ARG A  58 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.005   0.001   HIS A 139 
   PHE   0.072   0.020   PHE A  45 
   TYR   0.146   0.025   TYR A 111 
   ARG   0.005   0.002   ARG A  58 

                     ----------Asn/Gln/His flips----------                     

  No backwards Asn/Gln/His sidechains found.

=================================== Summary ===================================


End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000 (Z=  0.001)
  Max. delta:    0.067 (Z=  3.955)
  Mean delta:    0.017 (Z=  0.899)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  51  ILE  CA
   A  51  ILE  C
   A  52  PRO  N         116.90   129.70   -12.80  1.50e+00  7.28e+01   8.5*sigma
   A 101  LYS  CA
   A 101  LYS  C
   A 102  PRO  N         116.90   128.78   -11.88  1.50e+00  6.28e+01   7.9*sigma
   A 110  ASP  N
   A 110  ASP  CA
   A 110  ASP  CB        110.50    98.29    12.21  1.70e+00  5.15e+01   7.2*sigma
   A  83  THR  CA
   A  83  THR  CB
   A  83  THR  CG2       110.50   122.19   -11.69  1.70e+00  4.73e+01   6.9*sigma
   A 113  LYS  CA
   A 113  LYS  C
   A 114  PRO  N         116.90   125.34    -8.44  1.50e+00  3.16e+01   5.6*sigma
   A  32  GLU  N
   A  32  GLU  CA
   A  32  GLU  CB        110.50   102.38     8.12  1.70e+00  2.28e+01   4.8*sigma
   A  51  ILE  O
   A  51  ILE  C
   A  52  PRO  N         123.00   115.48     7.52  1.60e+00  2.21e+01   4.7*sigma
   A  97  SER  C
   A  98  SER  N
   A  98  SER  CA        121.70   130.00    -8.30  1.80e+00  2.13e+01   4.6*sigma
   A 101  LYS  CA
   A 101  LYS  C
   A 101  LYS  O         120.80   113.00     7.80  1.70e+00  2.11e+01   4.6*sigma
   A   8  GLU  CB
   A   8  GLU  CG
   A   8  GLU  CD        112.60   104.96     7.64  1.70e+00  2.02e+01   4.5*sigma
   A  50  TYR  C
   A  51  ILE  N
   A  51  ILE  CA        121.70   129.70    -8.00  1.80e+00  1.98e+01   4.4*sigma
   A  88  ASP  CA
   A  88  ASP  CB
   A  88  ASP  CG        112.60   108.18     4.42  1.00e+00  1.96e+01   4.4*sigma
   A  43  HIS  ND1
   A  43  HIS  CG
   A  43  HIS  CD2       106.10   110.48    -4.38  1.00e+00  1.91e+01   4.4*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.47    -4.37  1.00e+00  1.91e+01   4.4*sigma
   A  53  LEU  CA
   A  53  LEU  C
   A  54  PRO  N         116.90   123.42    -6.52  1.50e+00  1.89e+01   4.3*sigma
   A 134  HIS  ND1
   A 134  HIS  CG
   A 134  HIS  CD2       106.10   110.44    -4.34  1.00e+00  1.88e+01   4.3*sigma
   A  14  VAL  CA
   A  14  VAL  CB
   A  14  VAL  CG1       110.40   117.75    -7.35  1.70e+00  1.87e+01   4.3*sigma
   A 138  HIS  ND1
   A 138  HIS  CG
   A 138  HIS  CD2       106.10   110.41    -4.31  1.00e+00  1.86e+01   4.3*sigma
   A 101  LYS  CB
   A 101  LYS  CG
   A 101  LYS  CD        111.30   121.13    -9.83  2.30e+00  1.83e+01   4.3*sigma
   A 136  HIS  ND1
   A 136  HIS  CG
   A 136  HIS  CD2       106.10   110.37    -4.27  1.00e+00  1.82e+01   4.3*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   110.36    -4.26  1.00e+00  1.81e+01   4.3*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.34    -4.24  1.00e+00  1.80e+01   4.2*sigma
   A 110  ASP  CA
   A 110  ASP  CB
   A 110  ASP  CG        112.60   116.72    -4.12  1.00e+00  1.70e+01   4.1*sigma
   A  45  PHE  CA
   A  45  PHE  CB
   A  45  PHE  CG        113.80   109.70     4.10  1.00e+00  1.68e+01   4.1*sigma
   A 114  PRO  N
   A 114  PRO  CA
   A 114  PRO  CB        103.00   107.47    -4.47  1.10e+00  1.65e+01   4.1*sigma

  Min. delta:    0.000 (Z=  0.000)
  Max. delta:   12.796 (Z=  8.530)
  Mean delta:    2.476 (Z=  1.373)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 111  TYR  CA
   A 111  TYR  C
   A 112  VAL  N
   A 112  VAL  CA        180.00   143.24    36.76  5.00e+00  5.41e+01   7.4*sigma
   A 119  LEU  CA
   A 119  LEU  C
   A 120  GLU  N
   A 120  GLU  CA        180.00   149.86    30.14  5.00e+00  3.63e+01   6.0*sigma
   A 120  GLU  CA
   A 120  GLU  C
   A 121  GLY  N
   A 121  GLY  CA        180.00   152.22    27.78  5.00e+00  3.09e+01   5.6*sigma
   A 113  LYS  CA
   A 113  LYS  C
   A 114  PRO  N
   A 114  PRO  CA        180.00   153.38    26.62  5.00e+00  2.84e+01   5.3*sigma
   A  97  SER  CA
   A  97  SER  C
   A  98  SER  N
   A  98  SER  CA        180.00   156.92    23.08  5.00e+00  2.13e+01   4.6*sigma
   A  81  TYR  CA
   A  81  TYR  C
   A  82  THR  N
   A  82  THR  CA        180.00   159.04    20.96  5.00e+00  1.76e+01   4.2*sigma
   A  99  LEU  CA
   A  99  LEU  C
   A 100  GLN  N
   A 100  GLN  CA        180.00   159.08    20.92  5.00e+00  1.75e+01   4.2*sigma
   A  89  TYR  CA
   A  89  TYR  C
   A  90  SER  N
   A  90  SER  CA        180.00   159.63    20.37  5.00e+00  1.66e+01   4.1*sigma

  Min. delta:    0.010
  Max. delta:   83.712
  Mean delta:   11.733

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.002
  Max. delta:    0.561
  Mean delta:    0.124

                       ----------Planar groups----------                       

  atoms                 rms_deltas   delta_max    residual   deviation
   A  12  TYR  CB
   A  12  TYR  CG
   A  12  TYR  CD1
   A  12  TYR  CD2
   A  12  TYR  CE1
   A  12  TYR  CE2
   A  12  TYR  CZ
   A  12  TYR  OH            0.057       0.104       65.89   5.2*sigma

  Min. delta:    0.000
  Max. delta:    0.057
  Mean delta:    0.014

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

                       ----------Angle outliers----------                      

   A  98  SER  HA , Angle N-CA-HA, observed: 97.516, delta from target: 12.484

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.012   0.067   2241  Z= 0.640
    Angle     :  2.184  12.796   4077  Z= 0.992
    Chirality :  0.124   0.561    176
    Planarity :  0.012   0.070    326
    Dihedral  : 10.766  83.712    768
    Min Nonbonded Distance : 1.709
  
  Molprobity Statistics.
    All-atom Clashscore : 4.96
    Ramachandran Plot:
      Outliers :  2.92 %
      Allowed  : 13.87 %
      Favored  : 83.21 %
    Rotamer:
      Outliers :  0.00 %
      Allowed  :  1.61 %
      Favored  : 98.39 %
    Cbeta Deviations :  2.27 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.00 %
      Twisted Proline : 0.00 %
      Twisted General : 1.53 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -1.08 (0.78), residues: 137
    helix:  1.91 (0.70), residues: 54
    sheet:  None (None), residues: 0
    loop : -2.77 (0.73), residues: 83
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.004   0.001   HIS A 139 
   PHE   0.082   0.020   PHE A  45 
   TYR   0.140   0.031   TYR A  12 
   ARG   0.024   0.006   ARG A  21 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.004   0.001   HIS A 139 
   PHE   0.050   0.015   PHE A  45 
   TYR   0.104   0.028   TYR A  12 
   ARG   0.010   0.003   ARG A  58 

                     ----------Asn/Gln/His flips----------                     

  No backwards Asn/Gln/His sidechains found.

=================================== Summary ===================================

  Ramachandran outliers =   5.84 %
                favored =  83.21 %
  Rotamer outliers      =   0.00 %
  C-beta deviations     =     1
  Clashscore            =   3.16
  RMS(bonds)            =   0.0120
  RMS(angles)           =   2.01
  MolProbity score      =   1.80

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py

End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000 (Z=  0.003)
  Max. delta:    0.044 (Z=  3.850)
  Mean delta:    0.016 (Z=  0.864)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 116  ASP  CA
   A 116  ASP  C
   A 117  PRO  N         116.90   128.30   -11.40  1.50e+00  5.78e+01   7.6*sigma
   A 138  HIS  C
   A 139  HIS  N
   A 139  HIS  CA        121.70   132.55   -10.85  1.80e+00  3.63e+01   6.0*sigma
   A 139  HIS  N
   A 139  HIS  CA
   A 139  HIS  C         111.00   126.69   -15.69  2.80e+00  3.14e+01   5.6*sigma
   A 113  LYS  CA
   A 113  LYS  C
   A 114  PRO  N         116.90   123.95    -7.05  1.50e+00  2.21e+01   4.7*sigma
   A 131  ILE  N
   A 131  ILE  CA
   A 131  ILE  CB        111.50   119.30    -7.80  1.70e+00  2.11e+01   4.6*sigma
   A 116  ASP  O
   A 116  ASP  C
   A 117  PRO  N         123.00   115.72     7.28  1.60e+00  2.07e+01   4.5*sigma
   A  43  HIS  ND1
   A  43  HIS  CG
   A  43  HIS  CD2       106.10   110.59    -4.49  1.00e+00  2.02e+01   4.5*sigma
   A 130  SER  N
   A 130  SER  CA
   A 130  SER  CB        110.50   118.04    -7.54  1.70e+00  1.96e+01   4.4*sigma
   A  94  GLY  C
   A  95  ASP  N
   A  95  ASP  CA        121.70   129.66    -7.96  1.80e+00  1.95e+01   4.4*sigma
   A 134  HIS  ND1
   A 134  HIS  CG
   A 134  HIS  CD2       106.10   110.46    -4.36  1.00e+00  1.90e+01   4.4*sigma
   A  45  PHE  CA
   A  45  PHE  CB
   A  45  PHE  CG        113.80   109.53     4.27  1.00e+00  1.82e+01   4.3*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   110.33    -4.23  1.00e+00  1.79e+01   4.2*sigma
   A  75  GLU  CB
   A  75  GLU  CG
   A  75  GLU  CD        112.60   119.73    -7.13  1.70e+00  1.76e+01   4.2*sigma
   A 138  HIS  ND1
   A 138  HIS  CG
   A 138  HIS  CD2       106.10   110.28    -4.18  1.00e+00  1.75e+01   4.2*sigma
   A 136  HIS  ND1
   A 136  HIS  CG
   A 136  HIS  CD2       106.10   110.26    -4.16  1.00e+00  1.73e+01   4.2*sigma
   A  53  LEU  CA
   A  53  LEU  C
   A  54  PRO  N         116.90   123.12    -6.22  1.50e+00  1.72e+01   4.1*sigma
   A  74  ASP  CA
   A  74  ASP  CB
   A  74  ASP  CG        112.60   116.73    -4.13  1.00e+00  1.71e+01   4.1*sigma
   A  87  GLY  C
   A  88  ASP  N
   A  88  ASP  CA        121.70   128.99    -7.29  1.80e+00  1.64e+01   4.0*sigma
   A  72  ASN  N
   A  72  ASN  CA
   A  72  ASN  CB        110.50   117.36    -6.86  1.70e+00  1.63e+01   4.0*sigma

  Min. delta:    0.000 (Z=  0.000)
  Max. delta:   15.693 (Z=  7.600)
  Mean delta:    2.327 (Z=  1.284)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 118  ASP  CA
   A 118  ASP  C
   A 119  LEU  N
   A 119  LEU  CA        180.00   153.74    26.26  5.00e+00  2.76e+01   5.3*sigma
   A 130  SER  CA
   A 130  SER  C
   A 131  ILE  N
   A 131  ILE  CA        180.00   155.14    24.86  5.00e+00  2.47e+01   5.0*sigma
   A  81  TYR  CA
   A  81  TYR  C
   A  82  THR  N
   A  82  THR  CA        180.00   155.59    24.41  5.00e+00  2.38e+01   4.9*sigma
   A 138  HIS  CA
   A 138  HIS  C
   A 139  HIS  N
   A 139  HIS  CA        180.00   157.28    22.72  5.00e+00  2.06e+01   4.5*sigma
   A 131  ILE  CA
   A 131  ILE  C
   A 132  LEU  N
   A 132  LEU  CA        180.00   157.64    22.36  5.00e+00  2.00e+01   4.5*sigma
   A 136  HIS  CA
   A 136  HIS  C
   A 137  HIS  N
   A 137  HIS  CA        180.00   159.78    20.22  5.00e+00  1.64e+01   4.0*sigma

  Min. delta:    0.004
  Max. delta:   80.181
  Mean delta:   11.255

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.002
  Max. delta:    0.565
  Mean delta:    0.118

                       ----------Planar groups----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.052
  Mean delta:    0.013

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

                       ----------Angle outliers----------                      

   A 139  HIS  HA , Angle CB-CA-HA, observed: 121.775, delta from target: -12.775
   A 131  ILE  HA , Angle CB-CA-HA, observed: 95.646, delta from target: 13.354

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.011   0.044   2241  Z= 0.615
    Angle     :  2.072  15.693   4077  Z= 0.934
    Chirality :  0.118   0.565    176
    Planarity :  0.010   0.052    326
    Dihedral  : 10.591  80.181    768
    Min Nonbonded Distance : 1.768
  
  Molprobity Statistics.
    All-atom Clashscore : 3.16
    Ramachandran Plot:
      Outliers :  5.84 %
      Allowed  : 11.68 %
      Favored  : 82.48 %
    Rotamer:
      Outliers :  0.00 %
      Allowed  :  1.61 %
      Favored  : 98.39 %
    Cbeta Deviations :  2.27 %
    Peptide Plane:
      Cis-proline     : 14.29 %
      Cis-general     : 0.00 %
      Twisted Proline : 0.00 %
      Twisted General : 0.00 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -1.43 (0.69), residues: 137
    helix:  1.03 (0.64), residues: 57
    sheet:  None (None), residues: 0
    loop : -2.63 (0.66), residues: 80
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.002   0.001   HIS A 139 
   PHE   0.069   0.015   PHE A  67 
   TYR   0.121   0.026   TYR A 105 
   ARG   0.016   0.003   ARG A  58 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.002   0.001   HIS A 139 
   PHE   0.039   0.012   PHE A  67 
   TYR   0.089   0.024   TYR A 105 
   ARG   0.008   0.002   ARG A  58 

                     ----------Asn/Gln/His flips----------                     

  No backwards Asn/Gln/His sidechains found.

=================================== Summary ===================================

  Ramachandran outliers =   4.38 %
                favored =  84.67 %
  Rotamer outliers      =   1.61 %
  C-beta deviations     =     3
  Clashscore            =   3.16
  RMS(bonds)            =   0.0114
  RMS(angles)           =   2.16
  MolProbity score      =   1.93

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py
  Ramachandran outliers =   2.92 %
                favored =  83.21 %
  Rotamer outliers      =   0.00 %
  C-beta deviations     =     3
  Clashscore            =   4.96
  RMS(bonds)            =   0.0119
  RMS(angles)           =   2.18
  MolProbity score      =   1.95

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py

End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  atoms                 ideal   model   delta   sigma   slack  residual   deviation
   A   4  ILE  C
   A   4  ILE  O           1.23     1.15     0.08  2.00e-02  1.74e+01   4.2*sigma

  Min. delta:    0.000 (Z=  0.000)
  Max. delta:    0.083 (Z=  4.169)
  Mean delta:    0.016 (Z=  0.865)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 114  PRO  N
   A 114  PRO  CA
   A 114  PRO  C         112.10   128.04   -15.94  2.50e+00  4.06e+01   6.4*sigma
   A 113  LYS  C
   A 113  LYS  CA
   A 113  LYS  CB        110.10   120.39   -10.29  1.90e+00  2.93e+01   5.4*sigma
   A   4  ILE  O
   A   4  ILE  C
   A   5  THR  N         123.00   115.61     7.39  1.60e+00  2.13e+01   4.6*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   110.70    -4.60  1.00e+00  2.12e+01   4.6*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.57    -4.47  1.00e+00  2.00e+01   4.5*sigma
   A 138  HIS  ND1
   A 138  HIS  CG
   A 138  HIS  CD2       106.10   110.54    -4.44  1.00e+00  1.97e+01   4.4*sigma
   A  43  HIS  ND1
   A  43  HIS  CG
   A  43  HIS  CD2       106.10   110.52    -4.42  1.00e+00  1.95e+01   4.4*sigma
   A 136  HIS  ND1
   A 136  HIS  CG
   A 136  HIS  CD2       106.10   110.46    -4.36  1.00e+00  1.90e+01   4.4*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.38    -4.28  1.00e+00  1.83e+01   4.3*sigma
   A  21  ARG  CA
   A  21  ARG  C
   A  22  PRO  N         116.90   123.17    -6.27  1.50e+00  1.75e+01   4.2*sigma
   A 134  HIS  ND1
   A 134  HIS  CG
   A 134  HIS  CD2       106.10   110.22    -4.12  1.00e+00  1.70e+01   4.1*sigma

  Min. delta:    0.003 (Z=  0.002)
  Max. delta:   15.937 (Z=  6.375)
  Mean delta:    2.214 (Z=  1.205)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  45  PHE  CA
   A  45  PHE  C
   A  46  SER  N
   A  46  SER  CA        180.00   140.43    39.57  5.00e+00  6.26e+01   7.9*sigma
   A 128  MET  CA
   A 128  MET  C
   A 129  ARG  N
   A 129  ARG  CA        180.00   142.03    37.97  5.00e+00  5.77e+01   7.6*sigma
   A 129  ARG  CA
   A 129  ARG  C
   A 130  SER  N
   A 130  SER  CA        180.00   152.36    27.64  5.00e+00  3.05e+01   5.5*sigma
   A  85  LYS  CA
   A  85  LYS  C
   A  86  ILE  N
   A  86  ILE  CA        180.00   159.38    20.62  5.00e+00  1.70e+01   4.1*sigma
   A 113  LYS  CA
   A 113  LYS  C
   A 114  PRO  N
   A 114  PRO  CA        180.00  -159.51   -20.49  5.00e+00  1.68e+01   4.1*sigma

  Min. delta:    0.015
  Max. delta:   71.758
  Mean delta:   10.653

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.576
  Mean delta:    0.110

                       ----------Planar groups----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.091
  Mean delta:    0.014

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

                       ----------Angle outliers----------                      

   A 114  PRO  HA , Angle CB-CA-HA, observed: 123.644, delta from target: -14.644
   A 114  PRO  HA , Angle C-CA-HA, observed: 93.972, delta from target: 15.028

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.012   0.083   2241  Z= 0.616
    Angle     :  1.998  15.937   4077  Z= 0.887
    Chirality :  0.110   0.576    176
    Planarity :  0.011   0.091    326
    Dihedral  :  9.443  71.758    768
    Min Nonbonded Distance : 1.725
  
  Molprobity Statistics.
    All-atom Clashscore : 8.57
    Ramachandran Plot:
      Outliers :  4.38 %
      Allowed  : 13.87 %
      Favored  : 81.75 %
    Rotamer:
      Outliers :  0.81 %
      Allowed  :  3.23 %
      Favored  : 95.97 %
    Cbeta Deviations :  0.76 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.00 %
      Twisted Proline : 0.00 %
      Twisted General : 1.53 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -1.53 (0.73), residues: 137
    helix:  1.16 (0.58), residues: 61
    sheet:  None (None), residues: 0
    loop : -3.09 (0.75), residues: 76
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.004   0.002   HIS A 137 
   PHE   0.071   0.019   PHE A  45 
   TYR   0.075   0.015   TYR A  91 
   ARG   0.032   0.008   ARG A  58 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.004   0.002   HIS A 137 
   PHE   0.028   0.010   PHE A  45 
   TYR   0.058   0.016   TYR A  91 
   ARG   0.019   0.004   ARG A  58 

                     ----------Asn/Gln/His flips----------                     

   A 100  GLN

=================================== Summary ===================================

  Ramachandran outliers =   5.84 %
                favored =  82.48 %
  Rotamer outliers      =   0.00 %
  C-beta deviations     =     3
  Clashscore            =   3.16
  RMS(bonds)            =   0.0113
  RMS(angles)           =   2.07
  MolProbity score      =   1.81

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py

End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  atoms                 ideal   model   delta   sigma   slack  residual   deviation
   A 134  HIS  CE1
   A 134  HIS  NE2         1.32     1.36    -0.04  1.00e-02  1.63e+01   4.0*sigma

  Min. delta:    0.000 (Z=  0.000)
  Max. delta:    0.048 (Z=  4.032)
  Mean delta:    0.017 (Z=  0.916)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 137  HIS  C
   A 138  HIS  N
   A 138  HIS  CA        121.70   136.30   -14.60  1.80e+00  6.58e+01   8.1*sigma
   A 135  HIS  C
   A 136  HIS  N
   A 136  HIS  CA        121.70   135.27   -13.57  1.80e+00  5.68e+01   7.5*sigma
   A 135  HIS  O
   A 135  HIS  C
   A 136  HIS  N         123.00   112.71    10.29  1.60e+00  4.14e+01   6.4*sigma
   A 137  HIS  N
   A 137  HIS  CA
   A 137  HIS  CB        110.50   120.32    -9.82  1.70e+00  3.34e+01   5.8*sigma
   A 135  HIS  CA
   A 135  HIS  C
   A 136  HIS  N         116.20   127.16   -10.96  2.00e+00  3.00e+01   5.5*sigma
   A 138  HIS  CA
   A 138  HIS  CB
   A 138  HIS  CG        113.80   118.89    -5.09  1.00e+00  2.59e+01   5.1*sigma
   A 136  HIS  CA
   A 136  HIS  CB
   A 136  HIS  CG        113.80   118.66    -4.86  1.00e+00  2.36e+01   4.9*sigma
   A  20  THR  CA
   A  20  THR  CB
   A  20  THR  CG2       110.50   118.75    -8.25  1.70e+00  2.36e+01   4.9*sigma
   A 113  LYS  CA
   A 113  LYS  C
   A 114  PRO  N         116.90   124.06    -7.16  1.50e+00  2.28e+01   4.8*sigma
   A 138  HIS  N
   A 138  HIS  CA
   A 138  HIS  CB        110.50   118.60    -8.10  1.70e+00  2.27e+01   4.8*sigma
   A  42  GLY  C
   A  43  HIS  N
   A  43  HIS  CA        121.70   130.26    -8.56  1.80e+00  2.26e+01   4.8*sigma
   A  51  ILE  CA
   A  51  ILE  C
   A  52  PRO  N         116.90   124.02    -7.12  1.50e+00  2.26e+01   4.7*sigma
   A 137  HIS  O
   A 137  HIS  C
   A 138  HIS  N         123.00   115.44     7.56  1.60e+00  2.23e+01   4.7*sigma
   A 135  HIS  N
   A 135  HIS  CA
   A 135  HIS  CB        110.50   118.44    -7.94  1.70e+00  2.18e+01   4.7*sigma
   A 136  HIS  N
   A 136  HIS  CA
   A 136  HIS  CB        110.50   118.32    -7.82  1.70e+00  2.11e+01   4.6*sigma
   A 138  HIS  ND1
   A 138  HIS  CG
   A 138  HIS  CD2       106.10   110.66    -4.56  1.00e+00  2.08e+01   4.6*sigma
   A 116  ASP  CA
   A 116  ASP  C
   A 117  PRO  N         116.90   123.65    -6.75  1.50e+00  2.02e+01   4.5*sigma
   A 139  HIS  N
   A 139  HIS  CA
   A 139  HIS  CB        110.50   118.01    -7.51  1.70e+00  1.95e+01   4.4*sigma
   A 136  HIS  CB
   A 136  HIS  CG
   A 136  HIS  CD2       131.20   125.49     5.71  1.30e+00  1.93e+01   4.4*sigma
   A  21  ARG  CA
   A  21  ARG  C
   A  22  PRO  N         116.90   123.36    -6.46  1.50e+00  1.85e+01   4.3*sigma
   A  43  HIS  ND1
   A  43  HIS  CG
   A  43  HIS  CD2       106.10   110.41    -4.31  1.00e+00  1.85e+01   4.3*sigma
   A  49  GLU  CA
   A  49  GLU  CB
   A  49  GLU  CG        114.10   122.66    -8.56  2.00e+00  1.83e+01   4.3*sigma
   A 116  ASP  O
   A 116  ASP  C
   A 117  PRO  N         123.00   116.23     6.77  1.60e+00  1.79e+01   4.2*sigma
   A 137  HIS  CA
   A 137  HIS  C
   A 138  HIS  N         116.20   124.61    -8.41  2.00e+00  1.77e+01   4.2*sigma
   A  53  LEU  CA
   A  53  LEU  C
   A  54  PRO  N         116.90   123.06    -6.16  1.50e+00  1.69e+01   4.1*sigma
   A 139  HIS  ND1
   A 139  HIS  CE1
   A 139  HIS  NE2       108.40   112.45    -4.05  1.00e+00  1.64e+01   4.0*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   110.14    -4.04  1.00e+00  1.63e+01   4.0*sigma

  Min. delta:    0.001 (Z=  0.001)
  Max. delta:   14.601 (Z=  8.112)
  Mean delta:    2.277 (Z=  1.303)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 138  HIS  CA
   A 138  HIS  C
   A 139  HIS  N
   A 139  HIS  CA        180.00   144.07    35.93  5.00e+00  5.16e+01   7.2*sigma
   A 119  LEU  CA
   A 119  LEU  C
   A 120  GLU  N
   A 120  GLU  CA        180.00   156.99    23.01  5.00e+00  2.12e+01   4.6*sigma
   A 135  HIS  CA
   A 135  HIS  C
   A 136  HIS  N
   A 136  HIS  CA          0.00    20.08   -20.08  5.00e+00  1.61e+01   4.0*sigma

  Min. delta:    0.012
  Max. delta:   74.085
  Mean delta:    9.665

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.001
  Max. delta:    0.707
  Mean delta:    0.106

                       ----------Planar groups----------                       

  atoms                 rms_deltas   delta_max    residual   deviation
   A 136  HIS  CB
   A 136  HIS  CG
   A 136  HIS  ND1
   A 136  HIS  CD2
   A 136  HIS  CE1
   A 136  HIS  NE2           0.094       0.126      131.29   6.3*sigma
   A 138  HIS  CB
   A 138  HIS  CG
   A 138  HIS  ND1
   A 138  HIS  CD2
   A 138  HIS  CE1
   A 138  HIS  NE2           0.067       0.101       67.68   5.1*sigma

  Min. delta:    0.000
  Max. delta:    0.109
  Mean delta:    0.016

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.012   0.048   2241  Z= 0.652
    Angle     :  2.010  14.601   4077  Z= 0.934
    Chirality :  0.106   0.707    176
    Planarity :  0.012   0.089    326
    Dihedral  :  9.347  74.085    768
    Min Nonbonded Distance : 1.709
  
  Molprobity Statistics.
    All-atom Clashscore : 3.16
    Ramachandran Plot:
      Outliers :  8.03 %
      Allowed  : 16.06 %
      Favored  : 75.91 %
    Rotamer:
      Outliers :  0.00 %
      Allowed  :  0.00 %
      Favored  : 100.00 %
    Cbeta Deviations :  3.03 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 1.53 %
      Twisted Proline : 0.00 %
      Twisted General : 0.76 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -1.59 (0.73), residues: 137
    helix:  1.34 (0.61), residues: 66
    sheet:  None (None), residues: 0
    loop : -3.71 (0.70), residues: 71
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.004   0.001   HIS A  43 
   PHE   0.045   0.010   PHE A  67 
   TYR   0.111   0.016   TYR A  89 
   ARG   0.076   0.014   ARG A  21 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.004   0.001   HIS A  43 
   PHE   0.018   0.006   PHE A  67 
   TYR   0.079   0.015   TYR A  89 
   ARG   0.032   0.005   ARG A  21 

                     ----------Asn/Gln/His flips----------                     

   A 137  HIS
   A  66  GLN

=================================== Summary ===================================


End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000 (Z=  0.003)
  Max. delta:    0.044 (Z=  3.850)
  Mean delta:    0.016 (Z=  0.864)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 116  ASP  CA
   A 116  ASP  C
   A 117  PRO  N         116.90   128.30   -11.40  1.50e+00  5.78e+01   7.6*sigma
   A 138  HIS  C
   A 139  HIS  N
   A 139  HIS  CA        121.70   132.55   -10.85  1.80e+00  3.63e+01   6.0*sigma
   A 139  HIS  N
   A 139  HIS  CA
   A 139  HIS  C         111.00   126.69   -15.69  2.80e+00  3.14e+01   5.6*sigma
   A 113  LYS  CA
   A 113  LYS  C
   A 114  PRO  N         116.90   123.95    -7.05  1.50e+00  2.21e+01   4.7*sigma
   A 131  ILE  N
   A 131  ILE  CA
   A 131  ILE  CB        111.50   119.30    -7.80  1.70e+00  2.11e+01   4.6*sigma
   A 116  ASP  O
   A 116  ASP  C
   A 117  PRO  N         123.00   115.72     7.28  1.60e+00  2.07e+01   4.5*sigma
   A  43  HIS  ND1
   A  43  HIS  CG
   A  43  HIS  CD2       106.10   110.59    -4.49  1.00e+00  2.02e+01   4.5*sigma
   A 130  SER  N
   A 130  SER  CA
   A 130  SER  CB        110.50   118.04    -7.54  1.70e+00  1.96e+01   4.4*sigma
   A  94  GLY  C
   A  95  ASP  N
   A  95  ASP  CA        121.70   129.66    -7.96  1.80e+00  1.95e+01   4.4*sigma
   A 134  HIS  ND1
   A 134  HIS  CG
   A 134  HIS  CD2       106.10   110.46    -4.36  1.00e+00  1.90e+01   4.4*sigma
   A  45  PHE  CA
   A  45  PHE  CB
   A  45  PHE  CG        113.80   109.53     4.27  1.00e+00  1.82e+01   4.3*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   110.33    -4.23  1.00e+00  1.79e+01   4.2*sigma
   A  75  GLU  CB
   A  75  GLU  CG
   A  75  GLU  CD        112.60   119.73    -7.13  1.70e+00  1.76e+01   4.2*sigma
   A 138  HIS  ND1
   A 138  HIS  CG
   A 138  HIS  CD2       106.10   110.28    -4.18  1.00e+00  1.75e+01   4.2*sigma
   A 136  HIS  ND1
   A 136  HIS  CG
   A 136  HIS  CD2       106.10   110.26    -4.16  1.00e+00  1.73e+01   4.2*sigma
   A  53  LEU  CA
   A  53  LEU  C
   A  54  PRO  N         116.90   123.12    -6.22  1.50e+00  1.72e+01   4.1*sigma
   A  74  ASP  CA
   A  74  ASP  CB
   A  74  ASP  CG        112.60   116.73    -4.13  1.00e+00  1.71e+01   4.1*sigma
   A  87  GLY  C
   A  88  ASP  N
   A  88  ASP  CA        121.70   128.99    -7.29  1.80e+00  1.64e+01   4.0*sigma
   A  72  ASN  N
   A  72  ASN  CA
   A  72  ASN  CB        110.50   117.36    -6.86  1.70e+00  1.63e+01   4.0*sigma

  Min. delta:    0.000 (Z=  0.000)
  Max. delta:   15.693 (Z=  7.600)
  Mean delta:    2.327 (Z=  1.284)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 118  ASP  CA
   A 118  ASP  C
   A 119  LEU  N
   A 119  LEU  CA        180.00   153.74    26.26  5.00e+00  2.76e+01   5.3*sigma
   A 130  SER  CA
   A 130  SER  C
   A 131  ILE  N
   A 131  ILE  CA        180.00   155.14    24.86  5.00e+00  2.47e+01   5.0*sigma
   A  81  TYR  CA
   A  81  TYR  C
   A  82  THR  N
   A  82  THR  CA        180.00   155.59    24.41  5.00e+00  2.38e+01   4.9*sigma
   A 138  HIS  CA
   A 138  HIS  C
   A 139  HIS  N
   A 139  HIS  CA        180.00   157.28    22.72  5.00e+00  2.06e+01   4.5*sigma
   A 131  ILE  CA
   A 131  ILE  C
   A 132  LEU  N
   A 132  LEU  CA        180.00   157.64    22.36  5.00e+00  2.00e+01   4.5*sigma
   A 136  HIS  CA
   A 136  HIS  C
   A 137  HIS  N
   A 137  HIS  CA        180.00   159.78    20.22  5.00e+00  1.64e+01   4.0*sigma

  Min. delta:    0.004
  Max. delta:   80.181
  Mean delta:   11.255

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.002
  Max. delta:    0.565
  Mean delta:    0.118

                       ----------Planar groups----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.052
  Mean delta:    0.013

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

                       ----------Angle outliers----------                      

   A 139  HIS  HA , Angle CB-CA-HA, observed: 121.775, delta from target: -12.775
   A 131  ILE  HA , Angle CB-CA-HA, observed: 95.646, delta from target: 13.354

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.011   0.044   2241  Z= 0.615
    Angle     :  2.072  15.693   4077  Z= 0.934
    Chirality :  0.118   0.565    176
    Planarity :  0.010   0.052    326
    Dihedral  : 10.591  80.181    768
    Min Nonbonded Distance : 1.768
  
  Molprobity Statistics.
    All-atom Clashscore : 3.16
    Ramachandran Plot:
      Outliers :  5.84 %
      Allowed  : 11.68 %
      Favored  : 82.48 %
    Rotamer:
      Outliers :  0.00 %
      Allowed  :  1.61 %
      Favored  : 98.39 %
    Cbeta Deviations :  2.27 %
    Peptide Plane:
      Cis-proline     : 14.29 %
      Cis-general     : 0.00 %
      Twisted Proline : 0.00 %
      Twisted General : 0.00 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -1.43 (0.69), residues: 137
    helix:  1.03 (0.64), residues: 57
    sheet:  None (None), residues: 0
    loop : -2.63 (0.66), residues: 80
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.002   0.001   HIS A 139 
   PHE   0.069   0.015   PHE A  67 
   TYR   0.121   0.026   TYR A 105 
   ARG   0.016   0.003   ARG A  58 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.002   0.001   HIS A 139 
   PHE   0.039   0.012   PHE A  67 
   TYR   0.089   0.024   TYR A 105 
   ARG   0.008   0.002   ARG A  58 

                     ----------Asn/Gln/His flips----------                     

  No backwards Asn/Gln/His sidechains found.

=================================== Summary ===================================


End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  atoms                 ideal   model   delta   sigma   slack  residual   deviation
   A 139  HIS  CE1
   A 139  HIS  NE2         1.32     1.36    -0.04  1.00e-02  1.73e+01   4.2*sigma
   A 137  HIS  CE1
   A 137  HIS  NE2         1.32     1.36    -0.04  1.00e-02  1.73e+01   4.2*sigma
   A 136  HIS  CE1
   A 136  HIS  NE2         1.32     1.36    -0.04  1.00e-02  1.67e+01   4.1*sigma
   A  43  HIS  CE1
   A  43  HIS  NE2         1.32     1.36    -0.04  1.00e-02  1.62e+01   4.0*sigma

  Min. delta:    0.000 (Z=  0.001)
  Max. delta:    0.050 (Z=  4.160)
  Mean delta:    0.017 (Z=  0.933)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 113  LYS  CA
   A 113  LYS  C
   A 114  PRO  N         116.90   125.29    -8.39  1.50e+00  3.13e+01   5.6*sigma
   A  46  SER  N
   A  46  SER  CA
   A  46  SER  CB        110.50   119.05    -8.55  1.70e+00  2.53e+01   5.0*sigma
   A 116  ASP  CA
   A 116  ASP  C
   A 117  PRO  N         116.90   123.89    -6.99  1.50e+00  2.17e+01   4.7*sigma
   A  53  LEU  CA
   A  53  LEU  C
   A  54  PRO  N         116.90   123.88    -6.98  1.50e+00  2.17e+01   4.7*sigma
   A  51  ILE  CA
   A  51  ILE  C
   A  52  PRO  N         116.90   123.69    -6.79  1.50e+00  2.05e+01   4.5*sigma
   A  43  HIS  ND1
   A  43  HIS  CG
   A  43  HIS  CD2       106.10   110.58    -4.48  1.00e+00  2.00e+01   4.5*sigma
   A  90  SER  N
   A  90  SER  CA
   A  90  SER  CB        110.50   118.07    -7.57  1.70e+00  1.98e+01   4.5*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   110.49    -4.39  1.00e+00  1.93e+01   4.4*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.35    -4.25  1.00e+00  1.81e+01   4.3*sigma
   A 139  HIS  ND1
   A 139  HIS  CE1
   A 139  HIS  NE2       108.40   112.63    -4.23  1.00e+00  1.79e+01   4.2*sigma
   A  43  HIS  ND1
   A  43  HIS  CE1
   A  43  HIS  NE2       108.40   112.61    -4.21  1.00e+00  1.77e+01   4.2*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.28    -4.18  1.00e+00  1.75e+01   4.2*sigma
   A 135  HIS  ND1
   A 135  HIS  CE1
   A 135  HIS  NE2       108.40   112.51    -4.11  1.00e+00  1.69e+01   4.1*sigma
   A 137  HIS  ND1
   A 137  HIS  CE1
   A 137  HIS  NE2       108.40   112.46    -4.06  1.00e+00  1.65e+01   4.1*sigma
   A 136  HIS  ND1
   A 136  HIS  CG
   A 136  HIS  CD2       106.10   110.13    -4.03  1.00e+00  1.62e+01   4.0*sigma

  Min. delta:    0.004 (Z=  0.003)
  Max. delta:    8.549 (Z=  5.592)
  Mean delta:    2.112 (Z=  1.182)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  77  ILE  CA
   A  77  ILE  C
   A  78  ILE  N
   A  78  ILE  CA        180.00   156.71    23.29  5.00e+00  2.17e+01   4.7*sigma
   A 113  LYS  CA
   A 113  LYS  C
   A 114  PRO  N
   A 114  PRO  CA        180.00   158.07    21.93  5.00e+00  1.92e+01   4.4*sigma
   A  50  TYR  CA
   A  50  TYR  C
   A  51  ILE  N
   A  51  ILE  CA        180.00   158.83    21.17  5.00e+00  1.79e+01   4.2*sigma

  Min. delta:    0.008
  Max. delta:   81.310
  Mean delta:   11.032

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.001
  Max. delta:    0.597
  Mean delta:    0.102

                       ----------Planar groups----------                       

  atoms                 rms_deltas   delta_max    residual   deviation
   A  81  TYR  CB
   A  81  TYR  CG
   A  81  TYR  CD1
   A  81  TYR  CD2
   A  81  TYR  CE1
   A  81  TYR  CE2
   A  81  TYR  CZ
   A  81  TYR  OH            0.046       0.085       42.26   4.3*sigma

  Min. delta:    0.000
  Max. delta:    0.057
  Mean delta:    0.012

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

                       ----------Angle outliers----------                      

   A  46  SER  HA , Angle N-CA-HA, observed: 96.335, delta from target: 13.665

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.012   0.050   2241  Z= 0.664
    Angle     :  1.907  13.665   4077  Z= 0.862
    Chirality :  0.102   0.597    176
    Planarity :  0.010   0.063    326
    Dihedral  :  9.791  81.310    768
    Min Nonbonded Distance : 1.719
  
  Molprobity Statistics.
    All-atom Clashscore : 2.71
    Ramachandran Plot:
      Outliers :  2.19 %
      Allowed  : 17.52 %
      Favored  : 80.29 %
    Rotamer:
      Outliers :  0.00 %
      Allowed  :  1.61 %
      Favored  : 98.39 %
    Cbeta Deviations :  1.52 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.00 %
      Twisted Proline : 0.00 %
      Twisted General : 0.00 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -1.66 (0.70), residues: 137
    helix:  1.20 (0.57), residues: 66
    sheet:  None (None), residues: 0
    loop : -3.64 (0.69), residues: 71
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.004   0.001   HIS A 138 
   PHE   0.076   0.020   PHE A  45 
   TYR   0.144   0.026   TYR A  12 
   ARG   0.028   0.006   ARG A  21 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.004   0.001   HIS A 138 
   PHE   0.028   0.010   PHE A  45 
   TYR   0.106   0.025   TYR A  12 
   ARG   0.015   0.002   ARG A  58 

                     ----------Asn/Gln/His flips----------                     

  No backwards Asn/Gln/His sidechains found.

=================================== Summary ===================================

  Ramachandran outliers =   4.38 %
                favored =  81.75 %
  Rotamer outliers      =   0.81 %
  C-beta deviations     =     1
  Clashscore            =   8.57
  RMS(bonds)            =   0.0117
  RMS(angles)           =   2.00
  MolProbity score      =   2.17

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py

End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000 (Z=  0.000)
  Max. delta:    0.053 (Z=  3.776)
  Mean delta:    0.016 (Z=  0.814)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 116  ASP  CA
   A 116  ASP  C
   A 117  PRO  N         116.90   125.92    -9.02  1.50e+00  3.62e+01   6.0*sigma
   A 113  LYS  CA
   A 113  LYS  C
   A 114  PRO  N         116.90   125.50    -8.60  1.50e+00  3.29e+01   5.7*sigma
   A 139  HIS  CA
   A 139  HIS  CB
   A 139  HIS  CG        113.80   118.92    -5.12  1.00e+00  2.62e+01   5.1*sigma
   A 134  HIS  ND1
   A 134  HIS  CG
   A 134  HIS  CD2       106.10   110.75    -4.65  1.00e+00  2.16e+01   4.6*sigma
   A 116  ASP  O
   A 116  ASP  C
   A 117  PRO  N         123.00   115.57     7.43  1.60e+00  2.15e+01   4.6*sigma
   A 116  ASP  N
   A 116  ASP  CA
   A 116  ASP  CB        110.50   102.67     7.83  1.70e+00  2.12e+01   4.6*sigma
   A   7  ASP  CA
   A   7  ASP  CB
   A   7  ASP  CG        112.60   108.09     4.51  1.00e+00  2.04e+01   4.5*sigma
   A 138  HIS  CA
   A 138  HIS  CB
   A 138  HIS  CG        113.80   118.25    -4.45  1.00e+00  1.98e+01   4.5*sigma
   A 138  HIS  ND1
   A 138  HIS  CG
   A 138  HIS  CD2       106.10   110.50    -4.40  1.00e+00  1.93e+01   4.4*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.48    -4.38  1.00e+00  1.91e+01   4.4*sigma
   A  51  ILE  CA
   A  51  ILE  C
   A  52  PRO  N         116.90   123.40    -6.50  1.50e+00  1.88e+01   4.3*sigma
   A  45  PHE  CA
   A  45  PHE  CB
   A  45  PHE  CG        113.80   109.47     4.33  1.00e+00  1.87e+01   4.3*sigma
   A 136  HIS  ND1
   A 136  HIS  CG
   A 136  HIS  CD2       106.10   110.39    -4.29  1.00e+00  1.84e+01   4.3*sigma
   A 139  HIS  CB
   A 139  HIS  CG
   A 139  HIS  CD2       131.20   125.67     5.53  1.30e+00  1.81e+01   4.3*sigma
   A  43  HIS  ND1
   A  43  HIS  CG
   A  43  HIS  CD2       106.10   110.24    -4.14  1.00e+00  1.71e+01   4.1*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.20    -4.10  1.00e+00  1.68e+01   4.1*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   110.16    -4.06  1.00e+00  1.65e+01   4.1*sigma

  Min. delta:    0.001 (Z=  0.000)
  Max. delta:   10.413 (Z=  6.016)
  Mean delta:    2.193 (Z=  1.237)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 132  LEU  CA
   A 132  LEU  C
   A 133  GLU  N
   A 133  GLU  CA        180.00    99.92    80.08  5.00e+00  2.57e+02  16.0*sigma
   A 131  ILE  CA
   A 131  ILE  C
   A 132  LEU  N
   A 132  LEU  CA        180.00   131.00    49.00  5.00e+00  9.60e+01   9.8*sigma
   A  76  SER  CA
   A  76  SER  C
   A  77  ILE  N
   A  77  ILE  CA        180.00   143.76    36.24  5.00e+00  5.25e+01   7.2*sigma
   A 130  SER  CA
   A 130  SER  C
   A 131  ILE  N
   A 131  ILE  CA        180.00   144.84    35.16  5.00e+00  4.95e+01   7.0*sigma
   A 138  HIS  CA
   A 138  HIS  C
   A 139  HIS  N
   A 139  HIS  CA        180.00   149.16    30.84  5.00e+00  3.80e+01   6.2*sigma
   A 135  HIS  CA
   A 135  HIS  C
   A 136  HIS  N
   A 136  HIS  CA        180.00   153.49    26.51  5.00e+00  2.81e+01   5.3*sigma
   A 129  ARG  CA
   A 129  ARG  C
   A 130  SER  N
   A 130  SER  CA        180.00   156.37    23.63  5.00e+00  2.23e+01   4.7*sigma
   A 137  HIS  CA
   A 137  HIS  C
   A 138  HIS  N
   A 138  HIS  CA        180.00   156.41    23.59  5.00e+00  2.23e+01   4.7*sigma
   A 113  LYS  CA
   A 113  LYS  C
   A 114  PRO  N
   A 114  PRO  CA        180.00   158.15    21.85  5.00e+00  1.91e+01   4.4*sigma
   A 118  ASP  CA
   A 118  ASP  C
   A 119  LEU  N
   A 119  LEU  CA        180.00   159.44    20.56  5.00e+00  1.69e+01   4.1*sigma
   A 116  ASP  CA
   A 116  ASP  C
   A 117  PRO  N
   A 117  PRO  CA        180.00   159.70    20.30  5.00e+00  1.65e+01   4.1*sigma
   A 117  PRO  CA
   A 117  PRO  C
   A 118  ASP  N
   A 118  ASP  CA        180.00   159.82    20.18  5.00e+00  1.63e+01   4.0*sigma

  Min. delta:    0.060
  Max. delta:   80.081
  Mean delta:   11.800

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.515
  Mean delta:    0.111

                       ----------Planar groups----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.061
  Mean delta:    0.013

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.011   0.053   2241  Z= 0.580
    Angle     :  1.948  11.946   4077  Z= 0.893
    Chirality :  0.111   0.515    176
    Planarity :  0.011   0.061    326
    Dihedral  : 10.791  80.081    768
    Min Nonbonded Distance : 1.692
  
  Molprobity Statistics.
    All-atom Clashscore : 2.71
    Ramachandran Plot:
      Outliers :  5.84 %
      Allowed  :  8.76 %
      Favored  : 85.40 %
    Rotamer:
      Outliers :  0.00 %
      Allowed  :  1.61 %
      Favored  : 98.39 %
    Cbeta Deviations :  1.52 %
    Peptide Plane:
      Cis-proline     : 14.29 %
      Cis-general     : 0.76 %
      Twisted Proline : 0.00 %
      Twisted General : 3.82 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -0.52 (0.67), residues: 137
    helix:  2.41 (0.59), residues: 57
    sheet:  None (None), residues: 0
    loop : -2.67 (0.59), residues: 80
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.006   0.001   HIS A 139 
   PHE   0.085   0.024   PHE A  67 
   TYR   0.129   0.025   TYR A  91 
   ARG   0.037   0.007   ARG A  21 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.006   0.001   HIS A 139 
   PHE   0.032   0.014   PHE A  15 
   TYR   0.065   0.020   TYR A  91 
   ARG   0.023   0.004   ARG A  21 

                     ----------Asn/Gln/His flips----------                     

   A 100  GLN
   A  66  GLN
   A 138  HIS

=================================== Summary ===================================

  Ramachandran outliers =   8.03 %
                favored =  75.91 %
  Rotamer outliers      =   0.00 %
  C-beta deviations     =     4
  Clashscore            =   3.16
  RMS(bonds)            =   0.0122
  RMS(angles)           =   2.01
  MolProbity score      =   1.89

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py

End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  atoms                 ideal   model   delta   sigma   slack  residual   deviation
   A  54  PRO  N
   A  54  PRO  CD          1.47     1.36     0.11  1.40e-02  6.30e+01   7.9*sigma
   A 116  ASP  C
   A 116  ASP  O           1.23     1.12     0.11  2.00e-02  3.18e+01   5.6*sigma
   A 116  ASP  C
   A 117  PRO  N           1.34     1.42    -0.08  1.60e-02  2.33e+01   4.8*sigma

  Min. delta:    0.000 (Z=  0.001)
  Max. delta:    0.113 (Z=  7.935)
  Mean delta:    0.018 (Z=  0.978)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  54  PRO  N
   A  54  PRO  CD
   A  54  PRO  CG        103.20   116.97   -13.77  1.50e+00  8.43e+01   9.2*sigma
   A  50  TYR  CA
   A  50  TYR  C
   A  50  TYR  O         120.80   109.13    11.67  1.70e+00  4.71e+01   6.9*sigma
   A  11  SER  N
   A  11  SER  CA
   A  11  SER  CB        110.50   100.34    10.16  1.70e+00  3.57e+01   6.0*sigma
   A  30  ILE  CA
   A  30  ILE  CB
   A  30  ILE  CG1       110.40   120.43   -10.03  1.70e+00  3.48e+01   5.9*sigma
   A  18  VAL  N
   A  18  VAL  CA
   A  18  VAL  CB        111.50   101.72     9.78  1.70e+00  3.31e+01   5.8*sigma
   A  53  LEU  CA
   A  53  LEU  C
   A  54  PRO  N         116.90   125.41    -8.51  1.50e+00  3.21e+01   5.7*sigma
   A 116  ASP  CA
   A 116  ASP  C
   A 117  PRO  N         116.90   108.55     8.35  1.50e+00  3.10e+01   5.6*sigma
   A  10  LYS  N
   A  10  LYS  CA
   A  10  LYS  C         111.00   125.85   -14.85  2.80e+00  2.81e+01   5.3*sigma
   A  50  TYR  CA
   A  50  TYR  C
   A  51  ILE  N         116.20   126.42   -10.22  2.00e+00  2.61e+01   5.1*sigma
   A 116  ASP  C
   A 116  ASP  CA
   A 116  ASP  CB        110.10   100.51     9.59  1.90e+00  2.55e+01   5.0*sigma
   A  50  TYR  C
   A  51  ILE  N
   A  51  ILE  CA        121.70   130.46    -8.76  1.80e+00  2.37e+01   4.9*sigma
   A 117  PRO  N
   A 117  PRO  CA
   A 117  PRO  C         112.10   123.81   -11.71  2.50e+00  2.19e+01   4.7*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.67    -4.57  1.00e+00  2.09e+01   4.6*sigma
   A  21  ARG  CA
   A  21  ARG  C
   A  22  PRO  N         116.90   123.73    -6.83  1.50e+00  2.07e+01   4.6*sigma
   A 116  ASP  O
   A 116  ASP  C
   A 117  PRO  N         123.00   130.21    -7.21  1.60e+00  2.03e+01   4.5*sigma
   A 116  ASP  N
   A 116  ASP  CA
   A 116  ASP  CB        110.50   118.08    -7.58  1.70e+00  1.99e+01   4.5*sigma
   A 113  LYS  CA
   A 113  LYS  C
   A 114  PRO  N         116.90   123.58    -6.68  1.50e+00  1.98e+01   4.5*sigma
   A  51  ILE  CA
   A  51  ILE  C
   A  52  PRO  N         116.90   123.54    -6.64  1.50e+00  1.96e+01   4.4*sigma
   A 136  HIS  ND1
   A 136  HIS  CG
   A 136  HIS  CD2       106.10   110.49    -4.39  1.00e+00  1.92e+01   4.4*sigma
   A   9  LEU  C
   A   9  LEU  CA
   A   9  LEU  CB        110.10   118.42    -8.32  1.90e+00  1.92e+01   4.4*sigma
   A 134  HIS  ND1
   A 134  HIS  CG
   A 134  HIS  CD2       106.10   110.44    -4.34  1.00e+00  1.88e+01   4.3*sigma
   A  54  PRO  CA
   A  54  PRO  N
   A  54  PRO  CD        112.00   105.94     6.06  1.40e+00  1.87e+01   4.3*sigma
   A   2  LEU  CD1
   A   2  LEU  CG
   A   2  LEU  CD2       110.80   101.44     9.36  2.20e+00  1.81e+01   4.3*sigma
   A  15  PHE  C
   A  15  PHE  CA
   A  15  PHE  CB        110.10   102.03     8.07  1.90e+00  1.80e+01   4.2*sigma
   A  43  HIS  ND1
   A  43  HIS  CG
   A  43  HIS  CD2       106.10   110.33    -4.23  1.00e+00  1.79e+01   4.2*sigma
   A 138  HIS  ND1
   A 138  HIS  CG
   A 138  HIS  CD2       106.10   110.31    -4.21  1.00e+00  1.77e+01   4.2*sigma
   A 139  HIS  CA
   A 139  HIS  CB
   A 139  HIS  CG        113.80   117.98    -4.18  1.00e+00  1.75e+01   4.2*sigma
   A 115  ALA  N
   A 115  ALA  CA
   A 115  ALA  CB        110.40   116.66    -6.26  1.50e+00  1.74e+01   4.2*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   110.23    -4.13  1.00e+00  1.71e+01   4.1*sigma
   A  57  VAL  CG1
   A  57  VAL  CB
   A  57  VAL  CG2       110.80   101.84     8.96  2.20e+00  1.66e+01   4.1*sigma
   A   2  LEU  CB
   A   2  LEU  CG
   A   2  LEU  CD1       110.70   122.91   -12.21  3.00e+00  1.66e+01   4.1*sigma
   A 139  HIS  ND1
   A 139  HIS  CE1
   A 139  HIS  NE2       108.40   112.43    -4.03  1.00e+00  1.62e+01   4.0*sigma
   A 113  LYS  O
   A 113  LYS  C
   A 114  PRO  N         123.00   116.60     6.40  1.60e+00  1.60e+01   4.0*sigma

  Min. delta:    0.002 (Z=  0.001)
  Max. delta:   14.847 (Z=  9.180)
  Mean delta:    2.518 (Z=  1.357)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  48  ALA  CA
   A  48  ALA  C
   A  49  GLU  N
   A  49  GLU  CA        180.00   127.10    52.90  5.00e+00  1.12e+02  10.6*sigma
   A 122  ILE  CA
   A 122  ILE  C
   A 123  GLU  N
   A 123  GLU  CA        180.00   144.47    35.53  5.00e+00  5.05e+01   7.1*sigma
   A 138  HIS  CA
   A 138  HIS  C
   A 139  HIS  N
   A 139  HIS  CA        180.00   150.92    29.08  5.00e+00  3.38e+01   5.8*sigma
   A 125  LYS  CA
   A 125  LYS  C
   A 126  VAL  N
   A 126  VAL  CA        180.00   153.58    26.42  5.00e+00  2.79e+01   5.3*sigma
   A 116  ASP  CA
   A 116  ASP  C
   A 117  PRO  N
   A 117  PRO  CA        180.00  -156.00   -24.00  5.00e+00  2.30e+01   4.8*sigma
   A  45  PHE  CA
   A  45  PHE  C
   A  46  SER  N
   A  46  SER  CA        180.00   156.26    23.74  5.00e+00  2.25e+01   4.7*sigma
   A 121  GLY  CA
   A 121  GLY  C
   A 122  ILE  N
   A 122  ILE  CA        180.00   156.65    23.35  5.00e+00  2.18e+01   4.7*sigma

  Min. delta:    0.041
  Max. delta:   62.006
  Mean delta:    9.903

                       ----------Chiral volumes----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  10  LYS  CA
   A  10  LYS  N
   A  10  LYS  C
   A  10  LYS  CB          2.51     1.45     1.06  2.00e-01  2.82e+01   5.3*sigma

  Min. delta:    0.001
  Max. delta:    1.063
  Mean delta:    0.126

                       ----------Planar groups----------                       

  atoms                 rms_deltas   delta_max    residual   deviation
   A  15  PHE  CB
   A  15  PHE  CG
   A  15  PHE  CD1
   A  15  PHE  CD2
   A  15  PHE  CE1
   A  15  PHE  CE2
   A  15  PHE  CZ            0.193       0.270      653.35  13.5*sigma

  Min. delta:    0.000
  Max. delta:    0.193
  Mean delta:    0.019

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

                       ----------Angle outliers----------                      

   A 116  ASP  HA , Angle N-CA-HA, observed: 97.381, delta from target: 12.619
   A   2  LEU  HG , Angle CB-CG-HG, observed: 95.721, delta from target: 13.279
   A 117  PRO  HA , Angle C-CA-HA, observed: 93.652, delta from target: 15.348
   A  10  LYS  HA , Angle N-CA-HA, observed: 86.427, delta from target: 23.573

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.013   0.113   2241  Z= 0.696
    Angle     :  2.227  23.573   4077  Z= 0.990
    Chirality :  0.126   1.063    176
    Planarity :  0.018   0.272    326
    Dihedral  :  8.842  62.006    768
    Min Nonbonded Distance : 1.540
  
  Molprobity Statistics.
    All-atom Clashscore : 10.83
    Ramachandran Plot:
      Outliers :  6.57 %
      Allowed  : 10.95 %
      Favored  : 82.48 %
    Rotamer:
      Outliers :  0.00 %
      Allowed  :  4.03 %
      Favored  : 95.97 %
    Cbeta Deviations :  3.03 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.00 %
      Twisted Proline : 0.00 %
      Twisted General : 1.53 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -0.41 (0.73), residues: 137
    helix:  2.22 (0.64), residues: 59
    sheet:  None (None), residues: 0
    loop : -2.47 (0.69), residues: 78
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.006   0.002   HIS A 139 
   PHE   0.490   0.065   PHE A  15 
   TYR   0.079   0.017   TYR A  12 
   ARG   0.026   0.007   ARG A 127 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.006   0.002   HIS A 139 
   PHE   0.270   0.056   PHE A  15 
   TYR   0.059   0.013   TYR A  12 
   ARG   0.007   0.002   ARG A  21 

                     ----------Asn/Gln/His flips----------                     

   A  66  GLN
   A  72  ASN

=================================== Summary ===================================


End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000 (Z=  0.000)
  Max. delta:    0.048 (Z=  3.789)
  Mean delta:    0.017 (Z=  0.885)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  52  PRO  N
   A  52  PRO  CA
   A  52  PRO  C         112.10   126.16   -14.06  2.50e+00  3.16e+01   5.6*sigma
   A  77  ILE  CA
   A  77  ILE  CB
   A  77  ILE  CG2       110.50   119.77    -9.27  1.70e+00  2.97e+01   5.5*sigma
   A  74  ASP  CA
   A  74  ASP  CB
   A  74  ASP  CG        112.60   117.81    -5.21  1.00e+00  2.71e+01   5.2*sigma
   A  53  LEU  CA
   A  53  LEU  C
   A  54  PRO  N         116.90   124.56    -7.66  1.50e+00  2.61e+01   5.1*sigma
   A 101  LYS  CA
   A 101  LYS  C
   A 102  PRO  N         116.90   124.52    -7.62  1.50e+00  2.58e+01   5.1*sigma
   A  77  ILE  CB
   A  77  ILE  CG1
   A  77  ILE  CD1       113.80   123.74    -9.94  2.10e+00  2.24e+01   4.7*sigma
   A   2  LEU  N
   A   2  LEU  CA
   A   2  LEU  CB        110.50   102.56     7.94  1.70e+00  2.18e+01   4.7*sigma
   A 116  ASP  CA
   A 116  ASP  C
   A 117  PRO  N         116.90   123.68    -6.78  1.50e+00  2.04e+01   4.5*sigma
   A  43  HIS  CB
   A  43  HIS  CG
   A  43  HIS  ND1       122.70   115.99     6.71  1.50e+00  2.00e+01   4.5*sigma
   A 138  HIS  ND1
   A 138  HIS  CG
   A 138  HIS  CD2       106.10   110.55    -4.45  1.00e+00  1.98e+01   4.4*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   110.53    -4.43  1.00e+00  1.96e+01   4.4*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.48    -4.38  1.00e+00  1.92e+01   4.4*sigma
   A 113  LYS  CA
   A 113  LYS  C
   A 114  PRO  N         116.90   123.39    -6.49  1.50e+00  1.87e+01   4.3*sigma
   A 134  HIS  ND1
   A 134  HIS  CG
   A 134  HIS  CD2       106.10   110.37    -4.27  1.00e+00  1.82e+01   4.3*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.33    -4.23  1.00e+00  1.79e+01   4.2*sigma
   A 136  HIS  ND1
   A 136  HIS  CG
   A 136  HIS  CD2       106.10   110.33    -4.23  1.00e+00  1.79e+01   4.2*sigma
   A  21  ARG  CA
   A  21  ARG  C
   A  22  PRO  N         116.90   123.15    -6.25  1.50e+00  1.73e+01   4.2*sigma
   A  71  ILE  O
   A  71  ILE  C
   A  72  ASN  N         123.00   116.41     6.59  1.60e+00  1.69e+01   4.1*sigma
   A  72  ASN  C
   A  72  ASN  CA
   A  72  ASN  CB        110.10   102.29     7.81  1.90e+00  1.69e+01   4.1*sigma
   A  52  PRO  O
   A  52  PRO  C
   A  53  LEU  N         123.00   116.59     6.41  1.60e+00  1.60e+01   4.0*sigma

  Min. delta:    0.001 (Z=  0.001)
  Max. delta:   14.060 (Z=  5.624)
  Mean delta:    2.305 (Z=  1.272)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 122  ILE  CA
   A 122  ILE  C
   A 123  GLU  N
   A 123  GLU  CA        180.00   138.82    41.18  5.00e+00  6.78e+01   8.2*sigma
   A 137  HIS  CA
   A 137  HIS  C
   A 138  HIS  N
   A 138  HIS  CA        180.00   140.24    39.76  5.00e+00  6.32e+01   8.0*sigma
   A  51  ILE  CA
   A  51  ILE  C
   A  52  PRO  N
   A  52  PRO  CA        180.00  -146.56   -33.44  5.00e+00  4.47e+01   6.7*sigma
   A 121  GLY  CA
   A 121  GLY  C
   A 122  ILE  N
   A 122  ILE  CA        180.00   152.78    27.22  5.00e+00  2.96e+01   5.4*sigma
   A  95  ASP  CA
   A  95  ASP  C
   A  96  GLY  N
   A  96  GLY  CA        180.00  -156.73   -23.27  5.00e+00  2.17e+01   4.7*sigma
   A  81  TYR  CA
   A  81  TYR  C
   A  82  THR  N
   A  82  THR  CA        180.00   158.10    21.90  5.00e+00  1.92e+01   4.4*sigma
   A  99  LEU  CA
   A  99  LEU  C
   A 100  GLN  N
   A 100  GLN  CA        180.00   159.28    20.72  5.00e+00  1.72e+01   4.1*sigma

  Min. delta:    0.025
  Max. delta:   65.486
  Mean delta:   10.540

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.001
  Max. delta:    0.544
  Mean delta:    0.121

                       ----------Planar groups----------                       

  atoms                 rms_deltas   delta_max    residual   deviation
   A  51  ILE  C
   A  52  PRO  N
   A  52  PRO  CA
   A  52  PRO  CD            0.145       0.251       33.72   5.0*sigma

  Min. delta:    0.000
  Max. delta:    0.145
  Mean delta:    0.016

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

                       ----------Angle outliers----------                      

   A  52  PRO  HA , Angle CB-CA-HA, observed: 121.320, delta from target: -12.320
   A  52  PRO  HA , Angle C-CA-HA, observed: 94.584, delta from target: 14.416

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.012   0.048   2241  Z= 0.630
    Angle     :  2.047  14.416   4077  Z= 0.924
    Chirality :  0.121   0.544    176
    Planarity :  0.012   0.145    326
    Dihedral  :  9.253  65.486    768
    Min Nonbonded Distance : 1.759
  
  Molprobity Statistics.
    All-atom Clashscore : 2.26
    Ramachandran Plot:
      Outliers :  4.38 %
      Allowed  : 13.14 %
      Favored  : 82.48 %
    Rotamer:
      Outliers :  0.00 %
      Allowed  :  0.81 %
      Favored  : 99.19 %
    Cbeta Deviations :  1.52 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.00 %
      Twisted Proline : 14.29 %
      Twisted General : 1.53 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -1.99 (0.67), residues: 137
    helix:  0.48 (0.58), residues: 68
    sheet:  None (None), residues: 0
    loop : -3.41 (0.66), residues: 69
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.003   0.001   HIS A 135 
   PHE   0.075   0.014   PHE A  45 
   TYR   0.092   0.017   TYR A  12 
   ARG   0.024   0.005   ARG A  58 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.003   0.001   HIS A 135 
   PHE   0.037   0.010   PHE A  45 
   TYR   0.075   0.015   TYR A  12 
   ARG   0.015   0.003   ARG A  58 

                     ----------Asn/Gln/His flips----------                     

  No backwards Asn/Gln/His sidechains found.

=================================== Summary ===================================

  Ramachandran outliers =   5.84 %
                favored =  82.48 %
  Rotamer outliers      =   0.00 %
  C-beta deviations     =     3
  Clashscore            =   3.16
  RMS(bonds)            =   0.0113
  RMS(angles)           =   2.07
  MolProbity score      =   1.81

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py

End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000 (Z=  0.000)
  Max. delta:    0.070 (Z=  3.384)
  Mean delta:    0.016 (Z=  0.872)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 117  PRO  N
   A 117  PRO  CA
   A 117  PRO  C         112.10   124.94   -12.84  2.50e+00  2.64e+01   5.1*sigma
   A  92  THR  CA
   A  92  THR  CB
   A  92  THR  OG1       109.60   116.96    -7.36  1.50e+00  2.41e+01   4.9*sigma
   A   2  LEU  CD1
   A   2  LEU  CG
   A   2  LEU  CD2       110.80   100.16    10.64  2.20e+00  2.34e+01   4.8*sigma
   A 113  LYS  CA
   A 113  LYS  C
   A 114  PRO  N         116.90   124.15    -7.25  1.50e+00  2.33e+01   4.8*sigma
   A  77  ILE  CG1
   A  77  ILE  CB
   A  77  ILE  CG2       110.70   124.11   -13.41  3.00e+00  2.00e+01   4.5*sigma
   A  92  THR  CA
   A  92  THR  CB
   A  92  THR  CG2       110.50   117.97    -7.47  1.70e+00  1.93e+01   4.4*sigma
   A  43  HIS  ND1
   A  43  HIS  CG
   A  43  HIS  CD2       106.10   110.47    -4.37  1.00e+00  1.91e+01   4.4*sigma
   A 136  HIS  ND1
   A 136  HIS  CG
   A 136  HIS  CD2       106.10   110.43    -4.33  1.00e+00  1.88e+01   4.3*sigma
   A 139  HIS  N
   A 139  HIS  CA
   A 139  HIS  C         111.00   123.11   -12.11  2.80e+00  1.87e+01   4.3*sigma
   A 134  HIS  ND1
   A 134  HIS  CG
   A 134  HIS  CD2       106.10   110.42    -4.32  1.00e+00  1.86e+01   4.3*sigma
   A 138  HIS  ND1
   A 138  HIS  CG
   A 138  HIS  CD2       106.10   110.39    -4.29  1.00e+00  1.84e+01   4.3*sigma
   A  30  ILE  CA
   A  30  ILE  CB
   A  30  ILE  CG1       110.40   117.66    -7.26  1.70e+00  1.82e+01   4.3*sigma
   A   2  LEU  CB
   A   2  LEU  CG
   A   2  LEU  CD1       110.70   123.37   -12.67  3.00e+00  1.78e+01   4.2*sigma
   A  53  LEU  CA
   A  53  LEU  C
   A  54  PRO  N         116.90   123.09    -6.19  1.50e+00  1.70e+01   4.1*sigma

  Min. delta:    0.002 (Z=  0.001)
  Max. delta:   13.410 (Z=  5.137)
  Mean delta:    2.165 (Z=  1.175)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  51  ILE  CA
   A  51  ILE  C
   A  52  PRO  N
   A  52  PRO  CA        180.00   153.18    26.82  5.00e+00  2.88e+01   5.4*sigma
   A 138  HIS  CA
   A 138  HIS  C
   A 139  HIS  N
   A 139  HIS  CA        180.00   154.11    25.89  5.00e+00  2.68e+01   5.2*sigma
   A  21  ARG  CA
   A  21  ARG  C
   A  22  PRO  N
   A  22  PRO  CA        180.00   159.41    20.59  5.00e+00  1.70e+01   4.1*sigma
   A  92  THR  CA
   A  92  THR  C
   A  93  LEU  N
   A  93  LEU  CA        180.00   159.60    20.40  5.00e+00  1.66e+01   4.1*sigma

  Min. delta:    0.005
  Max. delta:   64.015
  Mean delta:   10.380

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.001
  Max. delta:    0.617
  Mean delta:    0.126

                       ----------Planar groups----------                       

  atoms                 rms_deltas   delta_max    residual   deviation
   A  91  TYR  CB
   A  91  TYR  CG
   A  91  TYR  CD1
   A  91  TYR  CD2
   A  91  TYR  CE1
   A  91  TYR  CE2
   A  91  TYR  CZ
   A  91  TYR  OH            0.062       0.118       76.97   5.9*sigma
   A  91  TYR  CA
   A  91  TYR  C
   A  91  TYR  O
   A  92  THR  N             0.049       0.085       24.44   4.3*sigma

  Min. delta:    0.000
  Max. delta:    0.110
  Mean delta:    0.015

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

                       ----------Angle outliers----------                      

   A   2  LEU  HG , Angle CD2-CG-HG, observed: 120.847, delta from target: -12.847
   A   2  LEU  HG , Angle CB-CG-HG, observed: 96.036, delta from target: 12.964
   A  92  THR  HB , Angle CA-CB-HB, observed: 95.565, delta from target: 13.435
   A 117  PRO  HA , Angle C-CA-HA, observed: 93.427, delta from target: 15.573
   A  92  THR  HA , Angle N-CA-HA, observed: 93.772, delta from target: 16.228
   A  77  ILE  HB , Angle CG1-CB-HB, observed: 91.422, delta from target: 17.578

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.012   0.070   2241  Z= 0.621
    Angle     :  2.010  17.578   4077  Z= 0.879
    Chirality :  0.126   0.617    176
    Planarity :  0.012   0.110    326
    Dihedral  :  9.704  64.015    768
    Min Nonbonded Distance : 1.662
  
  Molprobity Statistics.
    All-atom Clashscore : 5.41
    Ramachandran Plot:
      Outliers :  2.19 %
      Allowed  : 13.87 %
      Favored  : 83.94 %
    Rotamer:
      Outliers :  0.81 %
      Allowed  :  0.81 %
      Favored  : 98.39 %
    Cbeta Deviations :  0.76 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.00 %
      Twisted Proline : 0.00 %
      Twisted General : 0.00 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -1.11 (0.67), residues: 137
    helix:  2.07 (0.58), residues: 57
    sheet:  None (None), residues: 0
    loop : -3.13 (0.60), residues: 80
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.004   0.001   HIS A 137 
   PHE   0.038   0.011   PHE A  45 
   TYR   0.170   0.026   TYR A  91 
   ARG   0.023   0.007   ARG A  21 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.004   0.001   HIS A 137 
   PHE   0.021   0.011   PHE A  67 
   TYR   0.118   0.023   TYR A  91 
   ARG   0.012   0.004   ARG A  21 

                     ----------Asn/Gln/His flips----------                     

  No backwards Asn/Gln/His sidechains found.

=================================== Summary ===================================


End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000 (Z=  0.000)
  Max. delta:    0.053 (Z=  3.753)
  Mean delta:    0.015 (Z=  0.798)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  98  SER  N
   A  98  SER  CA
   A  98  SER  CB        110.50   119.60    -9.10  1.70e+00  2.87e+01   5.4*sigma
   A 101  LYS  CA
   A 101  LYS  C
   A 102  PRO  N         116.90   124.60    -7.70  1.50e+00  2.64e+01   5.1*sigma
   A 113  LYS  CA
   A 113  LYS  C
   A 114  PRO  N         116.90   124.30    -7.40  1.50e+00  2.43e+01   4.9*sigma
   A 137  HIS  C
   A 137  HIS  CA
   A 137  HIS  CB        110.10   100.91     9.19  1.90e+00  2.34e+01   4.8*sigma
   A 135  HIS  C
   A 135  HIS  CA
   A 135  HIS  CB        110.10   101.03     9.07  1.90e+00  2.28e+01   4.8*sigma
   A 139  HIS  N
   A 139  HIS  CA
   A 139  HIS  C         111.00   124.32   -13.32  2.80e+00  2.26e+01   4.8*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.84    -4.74  1.00e+00  2.25e+01   4.7*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   110.83    -4.73  1.00e+00  2.23e+01   4.7*sigma
   A  97  SER  N
   A  97  SER  CA
   A  97  SER  CB        110.50   118.49    -7.99  1.70e+00  2.21e+01   4.7*sigma
   A  74  ASP  C
   A  75  GLU  N
   A  75  GLU  CA        121.70   129.93    -8.23  1.80e+00  2.09e+01   4.6*sigma
   A 138  HIS  ND1
   A 138  HIS  CG
   A 138  HIS  CD2       106.10   110.56    -4.46  1.00e+00  1.99e+01   4.5*sigma
   A 136  HIS  ND1
   A 136  HIS  CG
   A 136  HIS  CD2       106.10   110.54    -4.44  1.00e+00  1.97e+01   4.4*sigma
   A   8  GLU  CB
   A   8  GLU  CG
   A   8  GLU  CD        112.60   105.28     7.32  1.70e+00  1.85e+01   4.3*sigma
   A  43  HIS  ND1
   A  43  HIS  CG
   A  43  HIS  CD2       106.10   110.35    -4.25  1.00e+00  1.81e+01   4.3*sigma
   A 134  HIS  ND1
   A 134  HIS  CG
   A 134  HIS  CD2       106.10   110.25    -4.15  1.00e+00  1.72e+01   4.1*sigma
   A 138  HIS  C
   A 139  HIS  N
   A 139  HIS  CA        121.70   129.09    -7.39  1.80e+00  1.69e+01   4.1*sigma
   A 129  ARG  N
   A 129  ARG  CA
   A 129  ARG  CB        110.50   117.46    -6.96  1.70e+00  1.67e+01   4.1*sigma
   A  53  LEU  CA
   A  53  LEU  C
   A  54  PRO  N         116.90   122.98    -6.08  1.50e+00  1.65e+01   4.1*sigma

  Min. delta:    0.001 (Z=  0.001)
  Max. delta:   13.323 (Z=  5.353)
  Mean delta:    2.232 (Z=  1.236)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 138  HIS  CA
   A 138  HIS  C
   A 139  HIS  N
   A 139  HIS  CA        180.00   131.32    48.68  5.00e+00  9.48e+01   9.7*sigma
   A 137  HIS  CA
   A 137  HIS  C
   A 138  HIS  N
   A 138  HIS  CA        180.00   156.36    23.64  5.00e+00  2.23e+01   4.7*sigma
   A 116  ASP  CA
   A 116  ASP  C
   A 117  PRO  N
   A 117  PRO  CA        180.00  -159.45   -20.55  5.00e+00  1.69e+01   4.1*sigma

  Min. delta:    0.075
  Max. delta:   77.380
  Mean delta:   10.675

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.367
  Mean delta:    0.097

                       ----------Planar groups----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.058
  Mean delta:    0.013

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.011   0.053   2241  Z= 0.568
    Angle     :  2.023  13.323   4077  Z= 0.907
    Chirality :  0.097   0.367    176
    Planarity :  0.010   0.058    326
    Dihedral  :  9.294  77.380    768
    Min Nonbonded Distance : 1.669
  
  Molprobity Statistics.
    All-atom Clashscore : 0.00
    Ramachandran Plot:
      Outliers :  2.92 %
      Allowed  :  8.76 %
      Favored  : 88.32 %
    Rotamer:
      Outliers :  0.81 %
      Allowed  :  1.61 %
      Favored  : 97.58 %
    Cbeta Deviations :  2.27 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.00 %
      Twisted Proline : 0.00 %
      Twisted General : 0.76 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -1.59 (0.64), residues: 137
    helix:  0.23 (0.57), residues: 71
    sheet:  None (None), residues: 0
    loop : -2.62 (0.63), residues: 66
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.003   0.001   HIS A 138 
   PHE   0.061   0.012   PHE A  45 
   TYR   0.099   0.017   TYR A  89 
   ARG   0.030   0.006   ARG A  58 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.003   0.001   HIS A 138 
   PHE   0.024   0.007   PHE A  45 
   TYR   0.081   0.018   TYR A  89 
   ARG   0.008   0.002   ARG A  21 

                     ----------Asn/Gln/His flips----------                     

   A  28  GLN

=================================== Summary ===================================


End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000 (Z=  0.000)
  Max. delta:    0.049 (Z=  3.308)
  Mean delta:    0.016 (Z=  0.853)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 101  LYS  CA
   A 101  LYS  C
   A 102  PRO  N         116.90   126.22    -9.32  1.50e+00  3.86e+01   6.2*sigma
   A 113  LYS  CA
   A 113  LYS  C
   A 114  PRO  N         116.90   126.09    -9.19  1.50e+00  3.76e+01   6.1*sigma
   A  77  ILE  C
   A  78  ILE  N
   A  78  ILE  CA        121.70   130.99    -9.29  1.80e+00  2.66e+01   5.2*sigma
   A  97  SER  N
   A  97  SER  CA
   A  97  SER  CB        110.50   119.12    -8.62  1.70e+00  2.57e+01   5.1*sigma
   A  50  TYR  CA
   A  50  TYR  C
   A  50  TYR  O         120.80   112.23     8.57  1.70e+00  2.54e+01   5.0*sigma
   A  50  TYR  CA
   A  50  TYR  C
   A  51  ILE  N         116.20   125.44    -9.24  2.00e+00  2.13e+01   4.6*sigma
   A  50  TYR  C
   A  51  ILE  N
   A  51  ILE  CA        121.70   129.88    -8.18  1.80e+00  2.07e+01   4.5*sigma
   A  51  ILE  N
   A  51  ILE  CA
   A  51  ILE  CB        111.50   119.17    -7.67  1.70e+00  2.04e+01   4.5*sigma
   A  15  PHE  CA
   A  15  PHE  CB
   A  15  PHE  CG        113.80   109.37     4.43  1.00e+00  1.96e+01   4.4*sigma
   A  43  HIS  ND1
   A  43  HIS  CG
   A  43  HIS  CD2       106.10   110.52    -4.42  1.00e+00  1.95e+01   4.4*sigma
   A  51  ILE  CA
   A  51  ILE  C
   A  52  PRO  N         116.90   123.46    -6.56  1.50e+00  1.91e+01   4.4*sigma
   A 136  HIS  ND1
   A 136  HIS  CG
   A 136  HIS  CD2       106.10   110.35    -4.25  1.00e+00  1.81e+01   4.2*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   110.34    -4.24  1.00e+00  1.80e+01   4.2*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.30    -4.20  1.00e+00  1.76e+01   4.2*sigma
   A  88  ASP  CA
   A  88  ASP  CB
   A  88  ASP  CG        112.60   108.40     4.20  1.00e+00  1.76e+01   4.2*sigma
   A  53  LEU  CA
   A  53  LEU  C
   A  54  PRO  N         116.90   123.14    -6.24  1.50e+00  1.73e+01   4.2*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.20    -4.10  1.00e+00  1.68e+01   4.1*sigma

  Min. delta:    0.000 (Z=  0.000)
  Max. delta:   10.015 (Z=  6.214)
  Mean delta:    2.197 (Z=  1.226)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  97  SER  CA
   A  97  SER  C
   A  98  SER  N
   A  98  SER  CA        180.00   147.47    32.53  5.00e+00  4.23e+01   6.5*sigma

  Min. delta:    0.021
  Max. delta:   83.923
  Mean delta:   10.917

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.512
  Mean delta:    0.114

                       ----------Planar groups----------                       

  atoms                 rms_deltas   delta_max    residual   deviation
   A  89  TYR  CB
   A  89  TYR  CG
   A  89  TYR  CD1
   A  89  TYR  CD2
   A  89  TYR  CE1
   A  89  TYR  CE2
   A  89  TYR  CZ
   A  89  TYR  OH            0.071       0.137      101.54   6.8*sigma
   A  91  TYR  CB
   A  91  TYR  CG
   A  91  TYR  CD1
   A  91  TYR  CD2
   A  91  TYR  CE1
   A  91  TYR  CE2
   A  91  TYR  CZ
   A  91  TYR  OH            0.063       0.112       78.61   5.6*sigma

  Min. delta:    0.000
  Max. delta:    0.071
  Mean delta:    0.014

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

                       ----------Angle outliers----------                      

   A  97  SER  HA , Angle N-CA-HA, observed: 97.535, delta from target: 12.465
   A  51  ILE  HA , Angle N-CA-HA, observed: 96.162, delta from target: 13.838

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.011   0.049   2241  Z= 0.607
    Angle     :  1.992  13.838   4077  Z= 0.897
    Chirality :  0.114   0.512    176
    Planarity :  0.012   0.084    326
    Dihedral  :  9.303  83.923    768
    Min Nonbonded Distance : 1.614
  
  Molprobity Statistics.
    All-atom Clashscore : 4.06
    Ramachandran Plot:
      Outliers :  5.11 %
      Allowed  :  5.84 %
      Favored  : 89.05 %
    Rotamer:
      Outliers :  0.81 %
      Allowed  :  1.61 %
      Favored  : 97.58 %
    Cbeta Deviations :  3.03 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.00 %
      Twisted Proline : 0.00 %
      Twisted General : 0.76 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -1.64 (0.66), residues: 137
    helix:  1.33 (0.63), residues: 63
    sheet:  None (None), residues: 0
    loop : -3.56 (0.53), residues: 74
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.005   0.002   HIS A 137 
   PHE   0.150   0.027   PHE A  15 
   TYR   0.173   0.034   TYR A  89 
   ARG   0.028   0.007   ARG A  21 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.005   0.002   HIS A 137 
   PHE   0.079   0.023   PHE A  15 
   TYR   0.137   0.034   TYR A  89 
   ARG   0.012   0.003   ARG A  21 

                     ----------Asn/Gln/His flips----------                     

  No backwards Asn/Gln/His sidechains found.

=================================== Summary ===================================


End of input processing

=============================== Model properties ==============================


End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       


                        ----------Bond lengths----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000 (Z=  0.003)
  Max. delta:    0.047 (Z=  3.500)
  Mean delta:    0.016 (Z=  0.850)

                        ----------Bond angles----------                        

  atoms                 ideal   model   delta   sigma   slack  residual   deviation
   A  67  PHE  C
   A  68  TYR  N           1.33     1.41    -0.08  1.40e-02  3.07e+01   5.5*sigma

  Min. delta:    0.000 (Z=  0.001)
  Max. delta:    0.078 (Z=  5.544)
  Mean delta:    0.017 (Z=  0.906)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 136  HIS  C
   A 137  HIS  N
   A 137  HIS  CA        121.70   134.63   -12.93  1.80e+00  5.16e+01   7.2*sigma
   A 138  HIS  C
   A 139  HIS  N
   A 139  HIS  CA        121.70   133.83   -12.13  1.80e+00  4.54e+01   6.7*sigma
   A 101  LYS  CA
   A 101  LYS  C
   A 102  PRO  N         116.90   125.90    -9.00  1.50e+00  3.60e+01   6.0*sigma
   A 139  HIS  CA
   A 139  HIS  CB
   A 139  HIS  CG        113.80   119.69    -5.89  1.00e+00  3.47e+01   5.9*sigma
   A 136  HIS  CA
   A 136  HIS  CB
   A 136  HIS  CG        113.80   119.36    -5.56  1.00e+00  3.09e+01   5.6*sigma
   A 113  LYS  CA
   A 113  LYS  C
   A 114  PRO  N         116.90   124.84    -7.94  1.50e+00  2.80e+01   5.3*sigma
   A 136  HIS  CA
   A 136  HIS  C
   A 137  HIS  N         116.20   126.46   -10.26  2.00e+00  2.63e+01   5.1*sigma
   A 136  HIS  O
   A 136  HIS  C
   A 137  HIS  N         123.00   115.53     7.47  1.60e+00  2.18e+01   4.7*sigma
   A 138  HIS  ND1
   A 138  HIS  CG
   A 138  HIS  CD2       106.10   110.74    -4.64  1.00e+00  2.15e+01   4.6*sigma
   A  43  HIS  ND1
   A  43  HIS  CG
   A  43  HIS  CD2       106.10   110.63    -4.53  1.00e+00  2.05e+01   4.5*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.61    -4.51  1.00e+00  2.04e+01   4.5*sigma
   A  53  LEU  CA
   A  53  LEU  C
   A  54  PRO  N         116.90   123.37    -6.47  1.50e+00  1.86e+01   4.3*sigma
   A  77  ILE  CB
   A  77  ILE  CG1
   A  77  ILE  CD1       113.80   122.62    -8.82  2.10e+00  1.77e+01   4.2*sigma
   A 134  HIS  ND1
   A 134  HIS  CG
   A 134  HIS  CD2       106.10   110.23    -4.13  1.00e+00  1.71e+01   4.1*sigma
   A  21  ARG  CA
   A  21  ARG  C
   A  22  PRO  N         116.90   123.10    -6.20  1.50e+00  1.71e+01   4.1*sigma
   A  15  PHE  CA
   A  15  PHE  CB
   A  15  PHE  CG        113.80   109.69     4.11  1.00e+00  1.69e+01   4.1*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.16    -4.06  1.00e+00  1.65e+01   4.1*sigma

  Min. delta:    0.001 (Z=  0.001)
  Max. delta:   12.925 (Z=  7.181)
  Mean delta:    2.229 (Z=  1.254)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 116  ASP  CA
   A 116  ASP  C
   A 117  PRO  N         116.90   125.74    -8.84  1.50e+00  3.47e+01   5.9*sigma
   A  49  GLU  C
   A  50  TYR  N
   A  50  TYR  CA        121.70   132.07   -10.37  1.80e+00  3.32e+01   5.8*sigma
   A  77  ILE  CB
   A  77  ILE  CG1
   A  77  ILE  CD1       113.80   125.23   -11.43  2.10e+00  2.96e+01   5.4*sigma
   A  49  GLU  O
   A  49  GLU  C
   A  50  TYR  N         123.00   114.67     8.33  1.60e+00  2.71e+01   5.2*sigma
   A  29  ASP  CA
   A  29  ASP  CB
   A  29  ASP  CG        112.60   117.78    -5.18  1.00e+00  2.69e+01   5.2*sigma
   A  84  GLU  N
   A  84  GLU  CA
   A  84  GLU  CB        110.50   119.10    -8.60  1.70e+00  2.56e+01   5.1*sigma
   A 103  ASP  CA
   A 103  ASP  CB
   A 103  ASP  CG        112.60   117.49    -4.89  1.00e+00  2.39e+01   4.9*sigma
   A 115  ALA  N
   A 115  ALA  CA
   A 115  ALA  CB        110.40   117.45    -7.05  1.50e+00  2.21e+01   4.7*sigma
   A  72  ASN  N
   A  72  ASN  CA
   A  72  ASN  CB        110.50   118.42    -7.92  1.70e+00  2.17e+01   4.7*sigma
   A 136  HIS  ND1
   A 136  HIS  CG
   A 136  HIS  CD2       106.10   110.54    -4.44  1.00e+00  1.97e+01   4.4*sigma
   A  84  GLU  CB
   A  84  GLU  CG
   A  84  GLU  CD        112.60   120.10    -7.50  1.70e+00  1.94e+01   4.4*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   110.42    -4.32  1.00e+00  1.87e+01   4.3*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.37    -4.27  1.00e+00  1.82e+01   4.3*sigma
   A 134  HIS  ND1
   A 134  HIS  CG
   A 134  HIS  CD2       106.10   110.29    -4.19  1.00e+00  1.76e+01   4.2*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.26    -4.16  1.00e+00  1.73e+01   4.2*sigma
   A 116  ASP  CA
   A 116  ASP  CB
   A 116  ASP  CG        112.60   108.47     4.13  1.00e+00  1.71e+01   4.1*sigma
   A  78  ILE  O
   A  78  ILE  C
   A  79  LYS  N         123.00   116.40     6.60  1.60e+00  1.70e+01   4.1*sigma
   A  43  HIS  ND1
   A  43  HIS  CG
   A  43  HIS  CD2       106.10   110.20    -4.10  1.00e+00  1.68e+01   4.1*sigma
   A 101  LYS  CA
   A 101  LYS  C
   A 102  PRO  N         116.90   123.00    -6.10  1.50e+00  1.65e+01   4.1*sigma
   A 138  HIS  ND1
   A 138  HIS  CG
   A 138  HIS  CD2       106.10   110.15    -4.05  1.00e+00  1.64e+01   4.1*sigma

  Min. delta:    0.001 (Z=  0.001)
  Max. delta:   11.429 (Z=  5.893)
  Mean delta:    2.319 (Z=  1.296)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 136  HIS  CA
   A 136  HIS  C
   A 137  HIS  N
   A 137  HIS  CA          0.00    29.49   -29.49  5.00e+00  3.48e+01   5.9*sigma
   A  21  ARG  CA
   A  21  ARG  C
   A  22  PRO  N
   A  22  PRO  CA        180.00   152.04    27.96  5.00e+00  3.13e+01   5.6*sigma
   A 138  HIS  CA
   A 138  HIS  C
   A 139  HIS  N
   A 139  HIS  CA          0.00    24.32   -24.32  5.00e+00  2.37e+01   4.9*sigma

  Min. delta:    0.011
  Max. delta:   71.471
  Mean delta:    9.938

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.001
  Max. delta:    0.347
  Mean delta:    0.092

                       ----------Planar groups----------                       

  atoms                 rms_deltas   delta_max    residual   deviation
   A 137  HIS  CB
   A 137  HIS  CG
   A 137  HIS  ND1
   A 137  HIS  CD2
   A 137  HIS  CE1
   A 137  HIS  NE2           0.068       0.099       70.09   4.9*sigma

  Min. delta:    0.000
  Max. delta:    0.068
  Mean delta:    0.014

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 117  PRO  CA
   A 117  PRO  C
   A 118  ASP  N
   A 118  ASP  CA        180.00   145.92    34.08  5.00e+00  4.64e+01   6.8*sigma
   A  82  THR  CA
   A  82  THR  C
   A  83  THR  N
   A  83  THR  CA        180.00   146.98    33.02  5.00e+00  4.36e+01   6.6*sigma
   A  84  GLU  CA
   A  84  GLU  C
   A  85  LYS  N
   A  85  LYS  CA        180.00   150.73    29.27  5.00e+00  3.43e+01   5.9*sigma
   A  80  GLY  CA
   A  80  GLY  C
   A  81  TYR  N
   A  81  TYR  CA        180.00   154.12    25.88  5.00e+00  2.68e+01   5.2*sigma
   A  79  LYS  CA
   A  79  LYS  C
   A  80  GLY  N
   A  80  GLY  CA        180.00   156.64    23.36  5.00e+00  2.18e+01   4.7*sigma
   A 119  LEU  CA
   A 119  LEU  C
   A 120  GLU  N
   A 120  GLU  CA        180.00   157.30    22.70  5.00e+00  2.06e+01   4.5*sigma
   A 132  LEU  CA
   A 132  LEU  C
   A 133  GLU  N
   A 133  GLU  CA        180.00   157.94    22.06  5.00e+00  1.95e+01   4.4*sigma
   A  77  ILE  CA
   A  77  ILE  C
   A  78  ILE  N
   A  78  ILE  CA        180.00   158.33    21.67  5.00e+00  1.88e+01   4.3*sigma
   A  52  PRO  CA
   A  52  PRO  C
   A  53  LEU  N
   A  53  LEU  CA        180.00   159.91    20.09  5.00e+00  1.61e+01   4.0*sigma

  Min. delta:    0.010
  Max. delta:   62.917
  Mean delta:   11.117

                       ----------Chiral volumes----------                      

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.499
  Mean delta:    0.117

                       ----------Planar groups----------                       

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.120
  Mean delta:    0.016

============================= Hydrogen validation =============================

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

============================ Molprobity validation ============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.012   0.078   2241  Z= 0.645
    Angle     :  1.955  12.925   4077  Z= 0.900
    Chirality :  0.092   0.347    176
    Planarity :  0.012   0.065    326
    Dihedral  :  9.190  71.471    768
    Min Nonbonded Distance : 1.738
  
  Molprobity Statistics.
    All-atom Clashscore : 1.35
    Ramachandran Plot:
      Outliers :  3.65 %
      Allowed  : 11.68 %
      Favored  : 84.67 %
    Rotamer:
      Outliers :  0.00 %
      Allowed  :  0.81 %
      Favored  : 99.19 %
    Cbeta Deviations :  0.00 %
    Peptide Plane:
      Cis-proline     : 14.29 %
      Cis-general     : 1.53 %
      Twisted Proline : 0.00 %
      Twisted General : 0.00 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -0.49 (0.75), residues: 137
    helix:  2.01 (0.68), residues: 55
    sheet:  None (None), residues: 0
    loop : -2.16 (0.70), residues: 82
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.009   0.003   HIS A 139 
   PHE   0.078   0.025   PHE A  15 
   TYR   0.111   0.024   TYR A  50 
   ARG   0.048   0.011   ARG A  58 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.009   0.003   HIS A 139 
   PHE   0.057   0.019   PHE A  15 
   TYR   0.070   0.020   TYR A  91 
   ARG   0.025   0.005   ARG A  21 

                     ----------Asn/Gln/His flips----------                     

  No backwards Asn/Gln/His sidechains found.

=================================== Summary ===================================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.011   0.047   2241  Z= 0.605
    Angle     :  2.065  11.772   4077  Z= 0.939
    Chirality :  0.117   0.499    176
    Planarity :  0.013   0.094    326
    Dihedral  :  9.916  62.917    768
    Min Nonbonded Distance : 1.679
  
  Molprobity Statistics.
    All-atom Clashscore : 4.96
    Ramachandran Plot:
      Outliers :  7.30 %
      Allowed  : 14.60 %
      Favored  : 78.10 %
    Rotamer:
      Outliers :  0.81 %
      Allowed  :  0.81 %
      Favored  : 98.39 %
    Cbeta Deviations :  2.27 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.76 %
      Twisted Proline : 0.00 %
      Twisted General : 1.53 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -0.97 (0.79), residues: 137
    helix:  1.91 (0.62), residues: 57
    sheet:  None (None), residues: 0
    loop : -2.81 (0.80), residues: 80
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.005   0.001   HIS A 139 
   PHE   0.057   0.013   PHE A  45 
   TYR   0.137   0.026   TYR A 111 
   ARG   0.093   0.015   ARG A  21 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.005   0.001   HIS A 139 
   PHE   0.029   0.011   PHE A  15 
   TYR   0.103   0.024   TYR A 111 
   ARG   0.011   0.004   ARG A 129 

                     ----------Asn/Gln/His flips----------                     

  No backwards Asn/Gln/His sidechains found.

=================================== Summary ===================================

  Ramachandran outliers =   2.19 %
                favored =  80.29 %
  Rotamer outliers      =   0.00 %
  C-beta deviations     =     2
  Clashscore            =   2.71
  RMS(bonds)            =   0.0123
  RMS(angles)           =   1.91
  MolProbity score      =   1.79

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py

End of input processing

=============================== Model properties ==============================


End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       


                        ----------Bond lengths----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000 (Z=  0.001)
  Max. delta:    0.050 (Z=  3.752)
  Mean delta:    0.016 (Z=  0.829)

                        ----------Bond angles----------                        

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000 (Z=  0.001)
  Max. delta:    0.072 (Z=  3.607)
  Mean delta:    0.016 (Z=  0.851)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A   3  LEU  N
   A   3  LEU  CA
   A   3  LEU  CB        110.50    98.41    12.09  1.70e+00  5.06e+01   7.1*sigma
   A 117  PRO  N
   A 117  PRO  CA
   A 117  PRO  C         112.10   128.71   -16.61  2.50e+00  4.42e+01   6.6*sigma
   A 116  ASP  CA
   A 116  ASP  CB
   A 116  ASP  CG        112.60   118.99    -6.39  1.00e+00  4.08e+01   6.4*sigma
   A 116  ASP  O
   A 116  ASP  C
   A 117  PRO  N         123.00   114.78     8.22  1.60e+00  2.64e+01   5.1*sigma
   A 113  LYS  CA
   A 113  LYS  C
   A 114  PRO  N         116.90   124.34    -7.44  1.50e+00  2.46e+01   5.0*sigma
   A 117  PRO  CA
   A 117  PRO  C
   A 118  ASP  N         116.20   125.65    -9.45  2.00e+00  2.23e+01   4.7*sigma
   A 138  HIS  ND1
   A 138  HIS  CG
   A 138  HIS  CD2       106.10   110.62    -4.52  1.00e+00  2.04e+01   4.5*sigma
   A  53  LEU  CA
   A  53  LEU  C
   A  54  PRO  N         116.90   123.49    -6.59  1.50e+00  1.93e+01   4.4*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.46    -4.36  1.00e+00  1.90e+01   4.4*sigma
   A  21  ARG  CA
   A  21  ARG  C
   A  22  PRO  N         116.90   123.44    -6.54  1.50e+00  1.90e+01   4.4*sigma
   A 136  HIS  ND1
   A 136  HIS  CG
   A 136  HIS  CD2       106.10   110.45    -4.35  1.00e+00  1.89e+01   4.4*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.43    -4.33  1.00e+00  1.87e+01   4.3*sigma
   A  43  HIS  ND1
   A  43  HIS  CG
   A  43  HIS  CD2       106.10   110.39    -4.29  1.00e+00  1.84e+01   4.3*sigma
   A  51  ILE  N
   A  51  ILE  CA
   A  51  ILE  CB        111.50   118.64    -7.14  1.70e+00  1.77e+01   4.2*sigma
   A 134  HIS  ND1
   A 134  HIS  CG
   A 134  HIS  CD2       106.10   110.29    -4.19  1.00e+00  1.76e+01   4.2*sigma
   A 118  ASP  CA
   A 118  ASP  CB
   A 118  ASP  CG        112.60   116.71    -4.11  1.00e+00  1.69e+01   4.1*sigma
   A 139  HIS  ND1
   A 139  HIS  CE1
   A 139  HIS  NE2       108.40   112.45    -4.05  1.00e+00  1.64e+01   4.0*sigma
   A 116  ASP  CA
   A 116  ASP  C
   A 117  PRO  N         116.90   122.97    -6.07  1.50e+00  1.64e+01   4.0*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   110.12    -4.02  1.00e+00  1.62e+01   4.0*sigma

  Min. delta:    0.001 (Z=  0.000)
  Max. delta:   16.613 (Z=  7.110)
  Mean delta:    2.248 (Z=  1.247)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  51  ILE  CA
   A  51  ILE  C
   A  52  PRO  N         116.90   128.02   -11.12  1.50e+00  5.50e+01   7.4*sigma
   A  66  GLN  CB
   A  66  GLN  CG
   A  66  GLN  CD        112.60   121.55    -8.95  1.70e+00  2.77e+01   5.3*sigma
   A   2  LEU  CD1
   A   2  LEU  CG
   A   2  LEU  CD2       110.80    99.59    11.21  2.20e+00  2.60e+01   5.1*sigma
   A   2  LEU  CB
   A   2  LEU  CG
   A   2  LEU  CD1       110.70   125.43   -14.73  3.00e+00  2.41e+01   4.9*sigma
   A  97  SER  C
   A  98  SER  N
   A  98  SER  CA        121.70   130.42    -8.72  1.80e+00  2.35e+01   4.8*sigma
   A  30  ILE  CA
   A  30  ILE  CB
   A  30  ILE  CG1       110.40   118.39    -7.99  1.70e+00  2.21e+01   4.7*sigma
   A  46  SER  CA
   A  46  SER  CB
   A  46  SER  OG        111.10   120.17    -9.07  2.00e+00  2.06e+01   4.5*sigma
   A 136  HIS  ND1
   A 136  HIS  CG
   A 136  HIS  CD2       106.10   110.56    -4.46  1.00e+00  1.99e+01   4.5*sigma
   A 113  LYS  CA
   A 113  LYS  C
   A 114  PRO  N         116.90   123.57    -6.67  1.50e+00  1.98e+01   4.4*sigma
   A  51  ILE  O
   A  51  ILE  C
   A  52  PRO  N         123.00   116.04     6.96  1.60e+00  1.89e+01   4.4*sigma
   A  78  ILE  C
   A  79  LYS  N
   A  79  LYS  CA        121.70   129.42    -7.72  1.80e+00  1.84e+01   4.3*sigma
   A  15  PHE  CA
   A  15  PHE  CB
   A  15  PHE  CG        113.80   118.08    -4.28  1.00e+00  1.83e+01   4.3*sigma
   A  74  ASP  C
   A  75  GLU  N
   A  75  GLU  CA        121.70   129.37    -7.67  1.80e+00  1.82e+01   4.3*sigma
   A  43  HIS  CA
   A  43  HIS  CB
   A  43  HIS  CG        113.80   118.06    -4.26  1.00e+00  1.81e+01   4.3*sigma
   A  20  THR  CA
   A  20  THR  CB
   A  20  THR  OG1       109.60   115.94    -6.34  1.50e+00  1.79e+01   4.2*sigma
   A 101  LYS  CA
   A 101  LYS  C
   A 102  PRO  N         116.90   123.21    -6.31  1.50e+00  1.77e+01   4.2*sigma
   A 134  HIS  ND1
   A 134  HIS  CG
   A 134  HIS  CD2       106.10   110.29    -4.19  1.00e+00  1.75e+01   4.2*sigma
   A 139  HIS  ND1
   A 139  HIS  CE1
   A 139  HIS  NE2       108.40   112.56    -4.16  1.00e+00  1.73e+01   4.2*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.20    -4.10  1.00e+00  1.68e+01   4.1*sigma
   A  43  HIS  ND1
   A  43  HIS  CG
   A  43  HIS  CD2       106.10   110.19    -4.09  1.00e+00  1.67e+01   4.1*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.17    -4.07  1.00e+00  1.66e+01   4.1*sigma
   A 138  HIS  ND1
   A 138  HIS  CG
   A 138  HIS  CD2       106.10   110.13    -4.03  1.00e+00  1.62e+01   4.0*sigma

  Min. delta:    0.000 (Z=  0.000)
  Max. delta:   14.735 (Z=  7.416)
  Mean delta:    2.369 (Z=  1.318)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  90  SER  CA
   A  90  SER  C
   A  91  TYR  N
   A  91  TYR  CA        180.00   143.00    37.00  5.00e+00  5.48e+01   7.4*sigma
   A 116  ASP  CA
   A 116  ASP  C
   A 117  PRO  N
   A 117  PRO  CA        180.00  -146.26   -33.74  5.00e+00  4.55e+01   6.7*sigma
   A 115  ALA  CA
   A 115  ALA  C
   A 116  ASP  N
   A 116  ASP  CA        180.00   152.50    27.50  5.00e+00  3.03e+01   5.5*sigma
   A 114  PRO  CA
   A 114  PRO  C
   A 115  ALA  N
   A 115  ALA  CA        180.00   159.32    20.68  5.00e+00  1.71e+01   4.1*sigma

  Min. delta:    0.015
  Max. delta:   69.855
  Mean delta:   10.683

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.001
  Max. delta:    0.673
  Mean delta:    0.121

                       ----------Planar groups----------                       

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 116  ASP  CA
   A 116  ASP  C
   A 117  PRO  N
   A 117  PRO  CA        180.00   149.64    30.36  5.00e+00  3.69e+01   6.1*sigma
   A 115  ALA  CA
   A 115  ALA  C
   A 116  ASP  N
   A 116  ASP  CA        180.00   156.91    23.09  5.00e+00  2.13e+01   4.6*sigma
   A 122  ILE  CA
   A 122  ILE  C
   A 123  GLU  N
   A 123  GLU  CA        180.00   159.47    20.53  5.00e+00  1.69e+01   4.1*sigma

  Min. delta:    0.008
  Max. delta:   65.060
  Mean delta:   10.810

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.540
  Mean delta:    0.107

                       ----------Planar groups----------                       

  atoms                 rms_deltas   delta_max    residual   deviation
   A  12  TYR  CB
   A  12  TYR  CG
   A  12  TYR  CD1
   A  12  TYR  CD2
   A  12  TYR  CE1
   A  12  TYR  CE2
   A  12  TYR  CZ
   A  12  TYR  OH            0.127       0.212      321.81  10.6*sigma
   A 116  ASP  C
   A 117  PRO  N
   A 117  PRO  CA
   A 117  PRO  CD            0.164       0.283       42.84   5.7*sigma

  Min. delta:    0.000
  Max. delta:    0.164
  Mean delta:    0.019

============================= Hydrogen validation =============================

  atoms                 rms_deltas   delta_max    residual   deviation
   A 105  TYR  CB
   A 105  TYR  CG
   A 105  TYR  CD1
   A 105  TYR  CD2
   A 105  TYR  CE1
   A 105  TYR  CE2
   A 105  TYR  CZ
   A 105  TYR  OH            0.053       0.098       55.58   4.9*sigma

  Min. delta:    0.000
  Max. delta:    0.053
  Mean delta:    0.012

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               


                ----------H/D atoms in the input model----------               


End of input processing

=============================== Model properties ==============================


End of input processing

=============================== Model properties ==============================

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   


                        ----------Bond lengths----------                       


                        ----------Bond lengths----------                       

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

                       ----------Angle outliers----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000 (Z=  0.001)
  Max. delta:    0.058 (Z=  3.603)
  Mean delta:    0.016 (Z=  0.846)

                        ----------Bond angles----------                        

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

                       ----------Angle outliers----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000 (Z=  0.001)
  Max. delta:    0.044 (Z=  3.456)
  Mean delta:    0.016 (Z=  0.836)

                        ----------Bond angles----------                        

   A 117  PRO  HA , Angle CB-CA-HA, observed: 122.908, delta from target: -13.908
   A 117  PRO  HA , Angle C-CA-HA, observed: 92.146, delta from target: 16.854

============================ Molprobity validation ============================

   A   2  LEU  HG , Angle CD2-CG-HG, observed: 123.970, delta from target: -15.970

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.011   0.072   2241  Z= 0.606
    Angle     :  2.013  16.854   4077  Z= 0.908
    Chirality :  0.121   0.673    176
    Planarity :  0.015   0.164    326
    Dihedral  :  9.616  69.855    768
    Min Nonbonded Distance : 1.755
  
  Molprobity Statistics.
    All-atom Clashscore : 4.96
    Ramachandran Plot:
      Outliers :  5.11 %
      Allowed  : 10.95 %
      Favored  : 83.94 %
    Rotamer:
      Outliers :  0.00 %
      Allowed  :  0.00 %
      Favored  : 100.00 %
    Cbeta Deviations :  2.27 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.00 %
      Twisted Proline : 14.29 %
      Twisted General : 0.76 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole:  0.04 (0.84), residues: 137
    helix:  2.20 (0.64), residues: 59
    sheet:  None (None), residues: 0
    loop : -1.86 (0.90), residues: 78
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.005   0.002   HIS A 139 
   PHE   0.027   0.010   PHE A  45 
   TYR   0.265   0.028   TYR A  12 
   ARG   0.025   0.005   ARG A  58 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.005   0.002   HIS A 139 
   PHE   0.020   0.009   PHE A  45 
   TYR   0.212   0.030   TYR A  12 
   ARG   0.015   0.002   ARG A  58 

                     ----------Asn/Gln/His flips----------                     


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.011   0.050   2241  Z= 0.590
    Angle     :  2.100  15.970   4077  Z= 0.954
    Chirality :  0.107   0.540    176
    Planarity :  0.010   0.068    326
    Dihedral  :  9.813  65.060    768
    Min Nonbonded Distance : 1.715
  
  Molprobity Statistics.
    All-atom Clashscore : 6.31
    Ramachandran Plot:
      Outliers :  2.92 %
      Allowed  : 10.95 %
      Favored  : 86.13 %
    Rotamer:
      Outliers :  0.00 %
      Allowed  :  2.42 %
      Favored  : 97.58 %
    Cbeta Deviations :  1.52 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.00 %
      Twisted Proline : 14.29 %
      Twisted General : 0.00 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -1.05 (0.71), residues: 137
    helix:  1.03 (0.59), residues: 56
    sheet:  None (None), residues: 0
    loop : -2.10 (0.73), residues: 81
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.007   0.002   HIS A  43 
   PHE   0.066   0.016   PHE A  15 
   TYR   0.143   0.025   TYR A 105 
   ARG   0.015   0.003   ARG A 127 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.007   0.002   HIS A  43 
   PHE   0.048   0.013   PHE A  15 
   TYR   0.098   0.022   TYR A 105 
   ARG   0.006   0.001   ARG A 127 

                     ----------Asn/Gln/His flips----------                     

  No backwards Asn/Gln/His sidechains found.

=================================== Summary ===================================

  No backwards Asn/Gln/His sidechains found.

=================================== Summary ===================================

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  51  ILE  CA
   A  51  ILE  C
   A  52  PRO  N         116.90   126.33    -9.43  1.50e+00  3.95e+01   6.3*sigma
   A 117  PRO  N
   A 117  PRO  CA
   A 117  PRO  CB        103.00    96.75     6.25  1.10e+00  3.23e+01   5.7*sigma
   A 116  ASP  C
   A 116  ASP  CA
   A 116  ASP  CB        110.10   120.58   -10.48  1.90e+00  3.04e+01   5.5*sigma
   A 117  PRO  N
   A 117  PRO  CA
   A 117  PRO  C         112.10   124.70   -12.60  2.50e+00  2.54e+01   5.0*sigma
   A 138  HIS  ND1
   A 138  HIS  CG
   A 138  HIS  CD2       106.10   110.65    -4.55  1.00e+00  2.07e+01   4.5*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   110.60    -4.50  1.00e+00  2.03e+01   4.5*sigma
   A 118  ASP  CA
   A 118  ASP  CB
   A 118  ASP  CG        112.60   117.02    -4.42  1.00e+00  1.95e+01   4.4*sigma
   A  43  HIS  ND1
   A  43  HIS  CG
   A  43  HIS  CD2       106.10   110.52    -4.42  1.00e+00  1.95e+01   4.4*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.50    -4.40  1.00e+00  1.94e+01   4.4*sigma
   A 136  HIS  ND1
   A 136  HIS  CG
   A 136  HIS  CD2       106.10   110.43    -4.33  1.00e+00  1.87e+01   4.3*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.33    -4.23  1.00e+00  1.79e+01   4.2*sigma
   A  17  SER  C
   A  18  VAL  N
   A  18  VAL  CA        121.70   129.25    -7.55  1.80e+00  1.76e+01   4.2*sigma
   A 134  HIS  ND1
   A 134  HIS  CG
   A 134  HIS  CD2       106.10   110.29    -4.19  1.00e+00  1.76e+01   4.2*sigma
   A  53  LEU  CA
   A  53  LEU  C
   A  54  PRO  N         116.90   123.10    -6.20  1.50e+00  1.71e+01   4.1*sigma
   A 116  ASP  CA
   A 116  ASP  CB
   A 116  ASP  CG        112.60   116.63    -4.03  1.00e+00  1.62e+01   4.0*sigma

  Min. delta:    0.001 (Z=  0.001)
  Max. delta:   12.603 (Z=  6.286)
  Mean delta:    2.139 (Z=  1.196)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 113  LYS  CA
   A 113  LYS  C
   A 114  PRO  N         116.90   125.69    -8.79  1.50e+00  3.43e+01   5.9*sigma
   A  61  LEU  CD1
   A  61  LEU  CG
   A  61  LEU  CD2       110.80   100.06    10.74  2.20e+00  2.38e+01   4.9*sigma
   A  43  HIS  ND1
   A  43  HIS  CG
   A  43  HIS  CD2       106.10   110.80    -4.70  1.00e+00  2.21e+01   4.7*sigma
   A  88  ASP  CA
   A  88  ASP  CB
   A  88  ASP  CG        112.60   107.98     4.62  1.00e+00  2.14e+01   4.6*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   110.40    -4.30  1.00e+00  1.85e+01   4.3*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.39    -4.29  1.00e+00  1.84e+01   4.3*sigma
   A   8  GLU  CB
   A   8  GLU  CG
   A   8  GLU  CD        112.60   105.31     7.29  1.70e+00  1.84e+01   4.3*sigma
   A 136  HIS  ND1
   A 136  HIS  CG
   A 136  HIS  CD2       106.10   110.35    -4.25  1.00e+00  1.80e+01   4.2*sigma
   A 138  HIS  ND1
   A 138  HIS  CG
   A 138  HIS  CD2       106.10   110.34    -4.24  1.00e+00  1.80e+01   4.2*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.31    -4.21  1.00e+00  1.77e+01   4.2*sigma
   A  82  THR  N
   A  82  THR  CA
   A  82  THR  CB        111.50   118.43    -6.93  1.70e+00  1.66e+01   4.1*sigma
   A  53  LEU  CA
   A  53  LEU  C
   A  54  PRO  N         116.90   123.02    -6.12  1.50e+00  1.66e+01   4.1*sigma

  Min. delta:    0.001 (Z=  0.001)
  Max. delta:   10.736 (Z=  5.858)
  Mean delta:    2.202 (Z=  1.225)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 116  ASP  CA
   A 116  ASP  C
   A 117  PRO  N
   A 117  PRO  CA        180.00  -141.36   -38.64  5.00e+00  5.97e+01   7.7*sigma
   A 100  GLN  CA
   A 100  GLN  C
   A 101  LYS  N
   A 101  LYS  CA        180.00   155.43    24.57  5.00e+00  2.42e+01   4.9*sigma
   A  93  LEU  CA
   A  93  LEU  C
   A  94  GLY  N
   A  94  GLY  CA        180.00   157.87    22.13  5.00e+00  1.96e+01   4.4*sigma
   A  51  ILE  CA
   A  51  ILE  C
   A  52  PRO  N
   A  52  PRO  CA        180.00   158.54    21.46  5.00e+00  1.84e+01   4.3*sigma

  Min. delta:    0.007
  Max. delta:   69.289
  Mean delta:   11.291

                       ----------Chiral volumes----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  81  TYR  CA
   A  81  TYR  C
   A  82  THR  N
   A  82  THR  CA        180.00   156.88    23.12  5.00e+00  2.14e+01   4.6*sigma
   A 113  LYS  CA
   A 113  LYS  C
   A 114  PRO  N
   A 114  PRO  CA        180.00   157.71    22.29  5.00e+00  1.99e+01   4.5*sigma
   A  82  THR  CA
   A  82  THR  C
   A  83  THR  N
   A  83  THR  CA        180.00   158.84    21.16  5.00e+00  1.79e+01   4.2*sigma

  Min. delta:    0.022
  Max. delta:   56.914
  Mean delta:    9.885

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.422
  Mean delta:    0.101

                       ----------Planar groups----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.001
  Max. delta:    0.501
  Mean delta:    0.099

                       ----------Planar groups----------                       

  atoms                 rms_deltas   delta_max    residual   deviation
   A  45  PHE  CB
   A  45  PHE  CG
   A  45  PHE  CD1
   A  45  PHE  CD2
   A  45  PHE  CE1
   A  45  PHE  CE2
   A  45  PHE  CZ            0.057       0.095       56.10   4.7*sigma

  Min. delta:    0.000
  Max. delta:    0.057
  Mean delta:    0.013

============================= Hydrogen validation =============================

  atoms                 rms_deltas   delta_max    residual   deviation
   A  15  PHE  CB
   A  15  PHE  CG
   A  15  PHE  CD1
   A  15  PHE  CD2
   A  15  PHE  CE1
   A  15  PHE  CE2
   A  15  PHE  CZ            0.081       0.121      113.61   6.0*sigma

  Min. delta:    0.000
  Max. delta:    0.107
  Mean delta:    0.015

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

                       ----------Angle outliers----------                      

   A 117  PRO  HA , Angle CB-CA-HA, observed: 124.840, delta from target: -15.840

============================ Molprobity validation ============================

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.011   0.058   2241  Z= 0.602
    Angle     :  1.947  15.840   4077  Z= 0.877
    Chirality :  0.101   0.422    176
    Planarity :  0.011   0.090    326
    Dihedral  : 10.391  69.289    768
    Min Nonbonded Distance : 1.779
  
  Molprobity Statistics.
    All-atom Clashscore : 2.26
    Ramachandran Plot:
      Outliers :  2.19 %
      Allowed  : 11.68 %
      Favored  : 86.13 %
    Rotamer:
      Outliers :  0.00 %
      Allowed  :  0.00 %
      Favored  : 100.00 %
    Cbeta Deviations :  2.27 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.00 %
      Twisted Proline : 14.29 %
      Twisted General : 0.00 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -1.16 (0.72), residues: 137
    helix:  1.32 (0.60), residues: 72
    sheet:  None (None), residues: 0
    loop : -3.46 (0.68), residues: 65
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.004   0.001   HIS A 138 
   PHE   0.202   0.025   PHE A  45 
   TYR   0.092   0.016   TYR A 105 
   ARG   0.060   0.014   ARG A  58 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.004   0.001   HIS A 138 
   PHE   0.095   0.018   PHE A  45 
   TYR   0.067   0.015   TYR A 105 
   ARG   0.031   0.007   ARG A  58 

                     ----------Asn/Gln/His flips----------                     

  No backwards Asn/Gln/His sidechains found.

=================================== Summary ===================================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.011   0.044   2241  Z= 0.595
    Angle     :  1.981  11.000   4077  Z= 0.894
    Chirality :  0.099   0.501    176
    Planarity :  0.013   0.126    326
    Dihedral  :  8.996  57.997    768
    Min Nonbonded Distance : 1.701
  
  Molprobity Statistics.
    All-atom Clashscore : 3.16
    Ramachandran Plot:
      Outliers :  3.65 %
      Allowed  :  7.30 %
      Favored  : 89.05 %
    Rotamer:
      Outliers :  0.00 %
      Allowed  :  3.23 %
      Favored  : 96.77 %
    Cbeta Deviations :  0.76 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.00 %
      Twisted Proline : 0.00 %
      Twisted General : 0.00 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole:  0.37 (0.77), residues: 137
    helix:  1.07 (0.61), residues: 65
    sheet:  None (None), residues: 0
    loop : -0.47 (0.87), residues: 72
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.003   0.001   HIS A 139 
   PHE   0.235   0.036   PHE A  15 
   TYR   0.087   0.019   TYR A 111 
   ARG   0.079   0.011   ARG A 129 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.003   0.001   HIS A 139 
   PHE   0.121   0.030   PHE A  15 
   TYR   0.073   0.017   TYR A 111 
   ARG   0.024   0.004   ARG A 129 

                     ----------Asn/Gln/His flips----------                     

  No backwards Asn/Gln/His sidechains found.

=================================== Summary ===================================


End of input processing

=============================== Model properties ==============================


End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000 (Z=  0.000)
  Max. delta:    0.050 (Z=  3.426)
  Mean delta:    0.016 (Z=  0.847)

                        ----------Bond angles----------                        

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000 (Z=  0.002)
  Max. delta:    0.055 (Z=  3.923)
  Mean delta:    0.016 (Z=  0.864)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  88  ASP  CA
   A  88  ASP  CB
   A  88  ASP  CG        112.60   104.36     8.24  1.00e+00  6.78e+01   8.2*sigma
   A 116  ASP  CA
   A 116  ASP  C
   A 117  PRO  N         116.90   126.02    -9.12  1.50e+00  3.70e+01   6.1*sigma
   A 101  LYS  CA
   A 101  LYS  C
   A 102  PRO  N         116.90   124.86    -7.96  1.50e+00  2.81e+01   5.3*sigma
   A   5  THR  CA
   A   5  THR  C
   A   6  PRO  N         116.90   123.98    -7.08  1.50e+00  2.23e+01   4.7*sigma
   A 115  ALA  C
   A 115  ALA  CA
   A 115  ALA  CB        110.50   103.53     6.97  1.50e+00  2.16e+01   4.6*sigma
   A 117  PRO  N
   A 117  PRO  CD
   A 117  PRO  CG        103.20   109.90    -6.70  1.50e+00  1.99e+01   4.5*sigma
   A 134  HIS  ND1
   A 134  HIS  CG
   A 134  HIS  CD2       106.10   110.51    -4.41  1.00e+00  1.94e+01   4.4*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   110.42    -4.32  1.00e+00  1.87e+01   4.3*sigma
   A  53  LEU  CA
   A  53  LEU  C
   A  54  PRO  N         116.90   123.34    -6.44  1.50e+00  1.84e+01   4.3*sigma
   A 116  ASP  CA
   A 116  ASP  CB
   A 116  ASP  CG        112.60   116.86    -4.26  1.00e+00  1.82e+01   4.3*sigma
   A 138  HIS  ND1
   A 138  HIS  CG
   A 138  HIS  CD2       106.10   110.33    -4.23  1.00e+00  1.79e+01   4.2*sigma
   A  98  SER  C
   A  98  SER  CA
   A  98  SER  CB        110.10   102.11     7.99  1.90e+00  1.77e+01   4.2*sigma
   A 136  HIS  ND1
   A 136  HIS  CG
   A 136  HIS  CD2       106.10   110.31    -4.21  1.00e+00  1.77e+01   4.2*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.29    -4.19  1.00e+00  1.75e+01   4.2*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.25    -4.15  1.00e+00  1.72e+01   4.1*sigma
   A  82  THR  C
   A  83  THR  N
   A  83  THR  CA        121.70   128.97    -7.27  1.80e+00  1.63e+01   4.0*sigma
   A  51  ILE  CA
   A  51  ILE  C
   A  52  PRO  N         116.90   122.94    -6.04  1.50e+00  1.62e+01   4.0*sigma

  Min. delta:    0.001 (Z=  0.001)
  Max. delta:    9.715 (Z=  8.237)
  Mean delta:    2.324 (Z=  1.277)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 122  ILE  CA
   A 122  ILE  C
   A 123  GLU  N
   A 123  GLU  CA        180.00   148.69    31.31  5.00e+00  3.92e+01   6.3*sigma
   A  91  TYR  CA
   A  91  TYR  C
   A  92  THR  N
   A  92  THR  CA        180.00   154.32    25.68  5.00e+00  2.64e+01   5.1*sigma

  Min. delta:    0.004
  Max. delta:   57.140
  Mean delta:   10.476

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.359
  Mean delta:    0.109

                       ----------Planar groups----------                       

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  43  HIS  C
   A  43  HIS  CA
   A  43  HIS  CB        110.10   101.14     8.96  1.90e+00  2.22e+01   4.7*sigma
   A 113  LYS  CA
   A 113  LYS  C
   A 114  PRO  N         116.90   123.91    -7.01  1.50e+00  2.18e+01   4.7*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.60    -4.50  1.00e+00  2.03e+01   4.5*sigma
   A  43  HIS  ND1
   A  43  HIS  CG
   A  43  HIS  CD2       106.10   110.59    -4.49  1.00e+00  2.02e+01   4.5*sigma
   A 138  HIS  ND1
   A 138  HIS  CG
   A 138  HIS  CD2       106.10   110.46    -4.36  1.00e+00  1.90e+01   4.4*sigma
   A 134  HIS  ND1
   A 134  HIS  CG
   A 134  HIS  CD2       106.10   110.40    -4.30  1.00e+00  1.85e+01   4.3*sigma
   A 139  HIS  CA
   A 139  HIS  CB
   A 139  HIS  CG        113.80   118.09    -4.29  1.00e+00  1.84e+01   4.3*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.36    -4.26  1.00e+00  1.81e+01   4.3*sigma
   A 116  ASP  N
   A 116  ASP  CA
   A 116  ASP  CB        110.50   103.29     7.21  1.70e+00  1.80e+01   4.2*sigma
   A  21  ARG  CA
   A  21  ARG  C
   A  22  PRO  N         116.90   123.25    -6.35  1.50e+00  1.79e+01   4.2*sigma
   A 136  HIS  ND1
   A 136  HIS  CG
   A 136  HIS  CD2       106.10   110.33    -4.23  1.00e+00  1.79e+01   4.2*sigma
   A 139  HIS  CB
   A 139  HIS  CG
   A 139  HIS  CD2       131.20   125.74     5.46  1.30e+00  1.77e+01   4.2*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   110.30    -4.20  1.00e+00  1.76e+01   4.2*sigma
   A 135  HIS  ND1
   A 135  HIS  CE1
   A 135  HIS  NE2       108.40   112.52    -4.12  1.00e+00  1.70e+01   4.1*sigma
   A 137  HIS  CB
   A 137  HIS  CG
   A 137  HIS  ND1       122.70   116.56     6.14  1.50e+00  1.68e+01   4.1*sigma
   A  13  SER  C
   A  14  VAL  N
   A  14  VAL  CA        121.70   129.03    -7.33  1.80e+00  1.66e+01   4.1*sigma
   A 116  ASP  CA
   A 116  ASP  C
   A 117  PRO  N         116.90   123.00    -6.10  1.50e+00  1.65e+01   4.1*sigma
   A  18  VAL  CA
   A  18  VAL  CB
   A  18  VAL  CG2       110.40   103.52     6.88  1.70e+00  1.64e+01   4.0*sigma
   A 118  ASP  C
   A 119  LEU  N
   A 119  LEU  CA        121.70   128.98    -7.28  1.80e+00  1.63e+01   4.0*sigma
   A  17  SER  CA
   A  17  SER  CB
   A  17  SER  OG        111.10   119.18    -8.08  2.00e+00  1.63e+01   4.0*sigma
   A 137  HIS  C
   A 137  HIS  CA
   A 137  HIS  CB        110.10   102.43     7.67  1.90e+00  1.63e+01   4.0*sigma

  Min. delta:    0.001 (Z=  0.000)
  Max. delta:   10.493 (Z=  4.715)
  Mean delta:    2.294 (Z=  1.282)

                      ----------Dihedral angles----------                      

  atoms                 rms_deltas   delta_max    residual   deviation
   A  68  TYR  CB
   A  68  TYR  CG
   A  68  TYR  CD1
   A  68  TYR  CD2
   A  68  TYR  CE1
   A  68  TYR  CE2
   A  68  TYR  CZ
   A  68  TYR  OH            0.073       0.139      107.60   7.0*sigma

  Min. delta:    0.000
  Max. delta:    0.073
  Mean delta:    0.015

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 133  GLU  CA
   A 133  GLU  C
   A 134  HIS  N
   A 134  HIS  CA        180.00   144.42    35.58  5.00e+00  5.06e+01   7.1*sigma
   A 119  LEU  CA
   A 119  LEU  C
   A 120  GLU  N
   A 120  GLU  CA        180.00   144.57    35.43  5.00e+00  5.02e+01   7.1*sigma
   A 113  LYS  CA
   A 113  LYS  C
   A 114  PRO  N
   A 114  PRO  CA        180.00   150.04    29.96  5.00e+00  3.59e+01   6.0*sigma
   A 129  ARG  CA
   A 129  ARG  C
   A 130  SER  N
   A 130  SER  CA        180.00   150.56    29.44  5.00e+00  3.47e+01   5.9*sigma
   A 115  ALA  CA
   A 115  ALA  C
   A 116  ASP  N
   A 116  ASP  CA        180.00   151.60    28.40  5.00e+00  3.23e+01   5.7*sigma
   A 114  PRO  CA
   A 114  PRO  C
   A 115  ALA  N
   A 115  ALA  CA        180.00   153.40    26.60  5.00e+00  2.83e+01   5.3*sigma
   A 121  GLY  CA
   A 121  GLY  C
   A 122  ILE  N
   A 122  ILE  CA        180.00   154.42    25.58  5.00e+00  2.62e+01   5.1*sigma
   A 138  HIS  CA
   A 138  HIS  C
   A 139  HIS  N
   A 139  HIS  CA        180.00   154.90    25.10  5.00e+00  2.52e+01   5.0*sigma
   A 127  ARG  CA
   A 127  ARG  C
   A 128  MET  N
   A 128  MET  CA        180.00   159.33    20.67  5.00e+00  1.71e+01   4.1*sigma
   A  21  ARG  CA
   A  21  ARG  C
   A  22  PRO  N
   A  22  PRO  CA        180.00   159.51    20.49  5.00e+00  1.68e+01   4.1*sigma

  Min. delta:    0.051
  Max. delta:   57.209
  Mean delta:   10.999

                       ----------Chiral volumes----------                      

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

============================ Molprobity validation ============================

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.787
  Mean delta:    0.123

                       ----------Planar groups----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.088
  Mean delta:    0.015

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.011   0.050   2241  Z= 0.603
    Angle     :  2.052  10.767   4077  Z= 0.926
    Chirality :  0.109   0.359    176
    Planarity :  0.012   0.073    326
    Dihedral  :  9.782  59.988    768
    Min Nonbonded Distance : 1.740
  
  Molprobity Statistics.
    All-atom Clashscore : 6.77
    Ramachandran Plot:
      Outliers :  6.57 %
      Allowed  :  8.76 %
      Favored  : 84.67 %
    Rotamer:
      Outliers :  2.42 %
      Allowed  :  0.81 %
      Favored  : 96.77 %
    Cbeta Deviations :  0.76 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.00 %
      Twisted Proline : 0.00 %
      Twisted General : 0.76 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -2.29 (0.67), residues: 137
    helix: -0.03 (0.61), residues: 72
    sheet:  None (None), residues: 0
    loop : -3.43 (0.63), residues: 65
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.006   0.002   HIS A 139 
   PHE   0.131   0.029   PHE A  15 
   TYR   0.187   0.026   TYR A  68 
   ARG   0.043   0.006   ARG A  21 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.006   0.002   HIS A 139 
   PHE   0.066   0.025   PHE A  15 
   TYR   0.139   0.024   TYR A  68 
   ARG   0.011   0.002   ARG A  21 

                     ----------Asn/Gln/His flips----------                     

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

                       ----------Angle outliers----------                      

   A 100  GLN
   A 136  HIS

=================================== Summary ===================================

   A   2  LEU  HG , Angle CD1-CG-HG, observed: 95.555, delta from target: 12.445

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.012   0.055   2241  Z= 0.615
    Angle     :  2.057  12.445   4077  Z= 0.932
    Chirality :  0.123   0.787    176
    Planarity :  0.012   0.088    326
    Dihedral  :  9.919  57.209    768
    Min Nonbonded Distance : 1.810
  
  Molprobity Statistics.
    All-atom Clashscore : 1.80
    Ramachandran Plot:
      Outliers :  5.84 %
      Allowed  : 10.22 %
      Favored  : 83.94 %
    Rotamer:
      Outliers :  0.00 %
      Allowed  :  1.61 %
      Favored  : 98.39 %
    Cbeta Deviations :  2.27 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.00 %
      Twisted Proline : 0.00 %
      Twisted General : 1.53 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -0.67 (0.69), residues: 137
    helix:  2.33 (0.64), residues: 55
    sheet:  None (None), residues: 0
    loop : -2.65 (0.61), residues: 82
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.005   0.001   HIS A 139 
   PHE   0.081   0.025   PHE A  15 
   TYR   0.128   0.021   TYR A  12 
   ARG   0.033   0.013   ARG A  21 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.005   0.001   HIS A 139 
   PHE   0.054   0.025   PHE A  45 
   TYR   0.057   0.017   TYR A  68 
   ARG   0.018   0.007   ARG A  58 

                     ----------Asn/Gln/His flips----------                     

   A 135  HIS

=================================== Summary ===================================


End of input processing

=============================== Model properties ==============================


End of input processing

=============================== Model properties ==============================


End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       


                        ----------Bond lengths----------                       

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000 (Z=  0.000)
  Max. delta:    0.050 (Z=  3.587)
  Mean delta:    0.016 (Z=  0.811)

                        ----------Bond angles----------                        

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000 (Z=  0.001)
  Max. delta:    0.049 (Z=  3.564)
  Mean delta:    0.016 (Z=  0.836)

                        ----------Bond angles----------                        

  atoms                 ideal   model   delta   sigma   slack  residual   deviation
   A  81  TYR  C
   A  82  THR  N           1.33     1.41    -0.08  1.40e-02  3.47e+01   5.9*sigma
   A  92  THR  C
   A  92  THR  O           1.23     1.15     0.08  2.00e-02  1.80e+01   4.2*sigma

  Min. delta:    0.000 (Z=  0.001)
  Max. delta:    0.085 (Z=  5.888)
  Mean delta:    0.017 (Z=  0.910)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 101  LYS  CA
   A 101  LYS  C
   A 102  PRO  N         116.90   124.95    -8.05  1.50e+00  2.88e+01   5.4*sigma
   A 134  HIS  ND1
   A 134  HIS  CG
   A 134  HIS  CD2       106.10   111.06    -4.96  1.00e+00  2.46e+01   5.0*sigma
   A 115  ALA  N
   A 115  ALA  CA
   A 115  ALA  CB        110.40   102.96     7.44  1.50e+00  2.46e+01   5.0*sigma
   A 113  LYS  CA
   A 113  LYS  C
   A 114  PRO  N         116.90   123.90    -7.00  1.50e+00  2.18e+01   4.7*sigma
   A  98  SER  C
   A  98  SER  CA
   A  98  SER  CB        110.10   101.56     8.54  1.90e+00  2.02e+01   4.5*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   110.58    -4.48  1.00e+00  2.01e+01   4.5*sigma
   A  43  HIS  ND1
   A  43  HIS  CG
   A  43  HIS  CD2       106.10   110.42    -4.32  1.00e+00  1.87e+01   4.3*sigma
   A 136  HIS  ND1
   A 136  HIS  CG
   A 136  HIS  CD2       106.10   110.37    -4.27  1.00e+00  1.83e+01   4.3*sigma
   A  43  HIS  CB
   A  43  HIS  CG
   A  43  HIS  ND1       122.70   116.42     6.28  1.50e+00  1.75e+01   4.2*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.28    -4.18  1.00e+00  1.75e+01   4.2*sigma
   A  45  PHE  CA
   A  45  PHE  CB
   A  45  PHE  CG        113.80   109.64     4.16  1.00e+00  1.73e+01   4.2*sigma
   A 134  HIS  C
   A 134  HIS  CA
   A 134  HIS  CB        110.10   102.43     7.67  1.90e+00  1.63e+01   4.0*sigma
   A  98  SER  N
   A  98  SER  CA
   A  98  SER  CB        110.50   117.33    -6.83  1.70e+00  1.61e+01   4.0*sigma
   A 138  HIS  ND1
   A 138  HIS  CG
   A 138  HIS  CD2       106.10   110.11    -4.01  1.00e+00  1.60e+01   4.0*sigma

  Min. delta:    0.003 (Z=  0.002)
  Max. delta:    8.537 (Z=  5.364)
  Mean delta:    2.208 (Z=  1.219)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  53  LEU  CA
   A  53  LEU  C
   A  54  PRO  N
   A  54  PRO  CA        180.00   156.19    23.81  5.00e+00  2.27e+01   4.8*sigma

  Min. delta:    0.018
  Max. delta:   56.208
  Mean delta:   11.033

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.298
  Mean delta:    0.105

                       ----------Planar groups----------                       

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  30  ILE  CA
   A  30  ILE  CB
   A  30  ILE  CG1       110.40   129.52   -19.12  1.70e+00  1.26e+02  11.2*sigma
   A  30  ILE  CA
   A  30  ILE  CB
   A  30  ILE  CG2       110.50    95.26    15.24  1.70e+00  8.03e+01   9.0*sigma
   A  92  THR  CA
   A  92  THR  C
   A  93  LEU  N         116.20   131.19   -14.99  2.00e+00  5.62e+01   7.5*sigma
   A  81  TYR  C
   A  81  TYR  CA
   A  81  TYR  CB        110.10    95.88    14.22  1.90e+00  5.60e+01   7.5*sigma
   A 116  ASP  CA
   A 116  ASP  C
   A 117  PRO  N         116.90   127.30   -10.40  1.50e+00  4.81e+01   6.9*sigma
   A  92  THR  O
   A  92  THR  C
   A  93  LEU  N         123.00   112.17    10.83  1.60e+00  4.58e+01   6.8*sigma
   A  82  THR  N
   A  82  THR  CA
   A  82  THR  CB        111.50   122.20   -10.70  1.70e+00  3.96e+01   6.3*sigma
   A   2  LEU  CD1
   A   2  LEU  CG
   A   2  LEU  CD2       110.80   123.26   -12.46  2.20e+00  3.21e+01   5.7*sigma
   A   2  LEU  C
   A   3  LEU  N
   A   3  LEU  CA        121.70   131.62    -9.92  1.80e+00  3.03e+01   5.5*sigma
   A  53  LEU  CA
   A  53  LEU  C
   A  54  PRO  N         116.90   123.73    -6.83  1.50e+00  2.07e+01   4.6*sigma
   A 116  ASP  O
   A 116  ASP  C
   A 117  PRO  N         123.00   115.95     7.05  1.60e+00  1.94e+01   4.4*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.49    -4.39  1.00e+00  1.93e+01   4.4*sigma
   A 134  HIS  ND1
   A 134  HIS  CG
   A 134  HIS  CD2       106.10   110.44    -4.34  1.00e+00  1.89e+01   4.3*sigma
   A   2  LEU  N
   A   2  LEU  CA
   A   2  LEU  CB        110.50   103.33     7.17  1.70e+00  1.78e+01   4.2*sigma
   A  89  TYR  CA
   A  89  TYR  CB
   A  89  TYR  CG        113.90   121.37    -7.47  1.80e+00  1.72e+01   4.2*sigma
   A  93  LEU  N
   A  93  LEU  CA
   A  93  LEU  C         111.00   122.56   -11.56  2.80e+00  1.70e+01   4.1*sigma
   A  21  ARG  CA
   A  21  ARG  C
   A  22  PRO  N         116.90   123.03    -6.13  1.50e+00  1.67e+01   4.1*sigma
   A 138  HIS  ND1
   A 138  HIS  CG
   A 138  HIS  CD2       106.10   110.18    -4.08  1.00e+00  1.66e+01   4.1*sigma
   A 103  ASP  N
   A 103  ASP  CA
   A 103  ASP  CB        110.50   103.60     6.90  1.70e+00  1.65e+01   4.1*sigma
   A 113  LYS  CA
   A 113  LYS  C
   A 114  PRO  N         116.90   122.98    -6.08  1.50e+00  1.64e+01   4.1*sigma
   A 136  HIS  ND1
   A 136  HIS  CG
   A 136  HIS  CD2       106.10   110.13    -4.03  1.00e+00  1.62e+01   4.0*sigma

  Min. delta:    0.000 (Z=  0.000)
  Max. delta:   19.119 (Z= 11.246)
  Mean delta:    2.414 (Z=  1.333)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  29  ASP  CA
   A  29  ASP  CB
   A  29  ASP  CG        112.60   120.37    -7.77  1.00e+00  6.04e+01   7.8*sigma
   A  45  PHE  CA
   A  45  PHE  CB
   A  45  PHE  CG        113.80   107.68     6.12  1.00e+00  3.75e+01   6.1*sigma
   A 116  ASP  CA
   A 116  ASP  C
   A 117  PRO  N         116.90   125.64    -8.74  1.50e+00  3.40e+01   5.8*sigma
   A 113  LYS  CA
   A 113  LYS  C
   A 114  PRO  N         116.90   124.90    -8.00  1.50e+00  2.84e+01   5.3*sigma
   A  43  HIS  ND1
   A  43  HIS  CG
   A  43  HIS  CD2       106.10   110.85    -4.75  1.00e+00  2.25e+01   4.7*sigma
   A  95  ASP  CA
   A  95  ASP  CB
   A  95  ASP  CG        112.60   107.92     4.68  1.00e+00  2.19e+01   4.7*sigma
   A 139  HIS  N
   A 139  HIS  CA
   A 139  HIS  CB        110.50   118.28    -7.78  1.70e+00  2.09e+01   4.6*sigma
   A  94  GLY  C
   A  95  ASP  N
   A  95  ASP  CA        121.70   129.61    -7.91  1.80e+00  1.93e+01   4.4*sigma
   A 134  HIS  ND1
   A 134  HIS  CG
   A 134  HIS  CD2       106.10   110.49    -4.39  1.00e+00  1.93e+01   4.4*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   110.47    -4.37  1.00e+00  1.91e+01   4.4*sigma
   A 101  LYS  CA
   A 101  LYS  C
   A 102  PRO  N         116.90   123.44    -6.54  1.50e+00  1.90e+01   4.4*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.44    -4.34  1.00e+00  1.88e+01   4.3*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.25    -4.15  1.00e+00  1.72e+01   4.1*sigma

  Min. delta:    0.001 (Z=  0.001)
  Max. delta:    8.807 (Z=  7.770)
  Mean delta:    2.235 (Z=  1.260)

                      ----------Dihedral angles----------                      

  atoms                 rms_deltas   delta_max    residual   deviation
   A  91  TYR  CB
   A  91  TYR  CG
   A  91  TYR  CD1
   A  91  TYR  CD2
   A  91  TYR  CE1
   A  91  TYR  CE2
   A  91  TYR  CZ
   A  91  TYR  OH            0.066       0.099       87.27   4.9*sigma

  Min. delta:    0.000
  Max. delta:    0.083
  Mean delta:    0.015

============================= Hydrogen validation =============================

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 138  HIS  CA
   A 138  HIS  C
   A 139  HIS  N
   A 139  HIS  CA        180.00   151.97    28.03  5.00e+00  3.14e+01   5.6*sigma

  Min. delta:    0.072
  Max. delta:   65.592
  Mean delta:   10.234

                       ----------Chiral volumes----------                      


                ----------H/D atoms in the input model----------               

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 135  HIS  CA
   A 135  HIS  C
   A 136  HIS  N
   A 136  HIS  CA        180.00   144.22    35.78  5.00e+00  5.12e+01   7.2*sigma
   A 136  HIS  CA
   A 136  HIS  C
   A 137  HIS  N
   A 137  HIS  CA        180.00   149.79    30.21  5.00e+00  3.65e+01   6.0*sigma
   A 137  HIS  CA
   A 137  HIS  C
   A 138  HIS  N
   A 138  HIS  CA        180.00   154.73    25.27  5.00e+00  2.55e+01   5.1*sigma
   A 117  PRO  CA
   A 117  PRO  C
   A 118  ASP  N
   A 118  ASP  CA        180.00   155.20    24.80  5.00e+00  2.46e+01   5.0*sigma
   A  92  THR  CA
   A  92  THR  C
   A  93  LEU  N
   A  93  LEU  CA        180.00  -155.80   -24.20  5.00e+00  2.34e+01   4.8*sigma

  Min. delta:    0.001
  Max. delta:   88.889
  Mean delta:   12.108

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.405
  Mean delta:    0.109

                       ----------Planar groups----------                       

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.540
  Mean delta:    0.106

                       ----------Planar groups----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.057
  Mean delta:    0.012

============================= Hydrogen validation =============================

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

  atoms                 rms_deltas   delta_max    residual   deviation
   A  43  HIS  CB
   A  43  HIS  CG
   A  43  HIS  ND1
   A  43  HIS  CD2
   A  43  HIS  CE1
   A  43  HIS  NE2           0.063       0.085       59.95   4.3*sigma

  Min. delta:    0.000
  Max. delta:    0.070
  Mean delta:    0.014

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

                       ----------Angle outliers----------                      


                ----------H/D atoms in the input model----------               

   A  98  SER  HA , Angle N-CA-HA, observed: 97.809, delta from target: 12.191

============================ Molprobity validation ============================

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

                       ----------Angle outliers----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

   A  81  TYR  HA , Angle CB-CA-HA, observed: 121.250, delta from target: -12.250
   A  81  TYR  HA , Angle N-CA-HA, observed: 97.466, delta from target: 12.534
   A  82  THR  HA , Angle N-CA-HA, observed: 93.968, delta from target: 16.032
   A  93  LEU  HA , Angle N-CA-HA, observed: 93.649, delta from target: 16.351
   A  30  ILE  HB , Angle CG2-CB-HB, observed: 131.188, delta from target: -22.188

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.011   0.050   2241  Z= 0.577
    Angle     :  1.978  12.191   4077  Z= 0.889
    Chirality :  0.105   0.298    176
    Planarity :  0.013   0.104    326
    Dihedral  : 10.704  58.975    768
    Min Nonbonded Distance : 1.706
  
  Molprobity Statistics.
    All-atom Clashscore : 5.41
    Ramachandran Plot:
      Outliers :  2.92 %
      Allowed  :  2.92 %
      Favored  : 94.16 %
    Rotamer:
      Outliers :  0.81 %
      Allowed  :  4.03 %
      Favored  : 95.16 %
    Cbeta Deviations :  0.76 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.00 %
      Twisted Proline : 0.00 %
      Twisted General : 0.00 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole:  0.70 (0.75), residues: 137
    helix:  1.45 (0.61), residues: 70
    sheet: -1.69 (1.03), residues: 16
    loop : -0.03 (1.03), residues: 51
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.004   0.001   HIS A 139 
   PHE   0.062   0.021   PHE A  15 
   TYR   0.206   0.030   TYR A  91 
   ARG   0.033   0.007   ARG A  58 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.004   0.001   HIS A 139 
   PHE   0.045   0.020   PHE A  15 
   TYR   0.126   0.025   TYR A 111 
   ARG   0.016   0.003   ARG A  21 

                     ----------Asn/Gln/His flips----------                     

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

============================ Molprobity validation ============================

  No backwards Asn/Gln/His sidechains found.

=================================== Summary ===================================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.012   0.085   2241  Z= 0.648
    Angle     :  2.141  22.188   4077  Z= 0.967
    Chirality :  0.106   0.540    176
    Planarity :  0.010   0.057    326
    Dihedral  : 10.899  88.889    768
    Min Nonbonded Distance : 1.622
  
  Molprobity Statistics.
    All-atom Clashscore : 9.92
    Ramachandran Plot:
      Outliers :  1.46 %
      Allowed  : 15.33 %
      Favored  : 83.21 %
    Rotamer:
      Outliers :  0.81 %
      Allowed  :  2.42 %
      Favored  : 96.77 %
    Cbeta Deviations :  3.03 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.00 %
      Twisted Proline : 0.00 %
      Twisted General : 1.53 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -1.05 (0.72), residues: 137
    helix:  1.40 (0.57), residues: 66
    sheet:  None (None), residues: 0
    loop : -2.97 (0.74), residues: 71
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.005   0.002   HIS A 139 
   PHE   0.073   0.019   PHE A  45 
   TYR   0.072   0.018   TYR A  81 
   ARG   0.030   0.007   ARG A  58 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.005   0.002   HIS A 139 
   PHE   0.036   0.013   PHE A  45 
   TYR   0.059   0.017   TYR A  81 
   ARG   0.015   0.004   ARG A  58 

                     ----------Asn/Gln/His flips----------                     

   A 135  HIS
   A 136  HIS

=================================== Summary ===================================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.011   0.049   2241  Z= 0.595
    Angle     :  2.023  11.857   4077  Z= 0.919
    Chirality :  0.109   0.405    176
    Planarity :  0.011   0.081    326
    Dihedral  :  8.964  65.592    768
    Min Nonbonded Distance : 1.637
  
  Molprobity Statistics.
    All-atom Clashscore : 2.26
    Ramachandran Plot:
      Outliers :  2.19 %
      Allowed  : 10.95 %
      Favored  : 86.86 %
    Rotamer:
      Outliers :  0.00 %
      Allowed  :  0.00 %
      Favored  : 100.00 %
    Cbeta Deviations :  0.76 %
    Peptide Plane:
      Cis-proline     : 14.29 %
      Cis-general     : 0.00 %
      Twisted Proline : 0.00 %
      Twisted General : 0.00 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -0.75 (0.70), residues: 137
    helix:  0.46 (0.54), residues: 81
    sheet:  None (None), residues: 0
    loop : -1.95 (0.85), residues: 56
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.007   0.002   HIS A 138 
   PHE   0.141   0.023   PHE A  45 
   TYR   0.087   0.017   TYR A  68 
   ARG   0.043   0.008   ARG A  58 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.007   0.002   HIS A 138 
   PHE   0.078   0.021   PHE A  45 
   TYR   0.073   0.016   TYR A  68 
   ARG   0.023   0.004   ARG A  58 

                     ----------Asn/Gln/His flips----------                     

  No backwards Asn/Gln/His sidechains found.

=================================== Summary ===================================

  Ramachandran outliers =   5.84 %
                favored =  85.40 %
  Rotamer outliers      =   0.00 %
  C-beta deviations     =     2
  Clashscore            =   2.71
  RMS(bonds)            =   0.0110
  RMS(angles)           =   1.95
  MolProbity score      =   1.71

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py

End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000 (Z=  0.002)
  Max. delta:    0.066 (Z=  3.881)
  Mean delta:    0.016 (Z=  0.877)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 117  PRO  CA
   A 117  PRO  C
   A 118  ASP  N         116.20   135.74   -19.54  2.00e+00  9.54e+01   9.8*sigma
   A 117  PRO  N
   A 117  PRO  CA
   A 117  PRO  C         112.10   134.85   -22.75  2.50e+00  8.28e+01   9.1*sigma
   A 130  SER  N
   A 130  SER  CA
   A 130  SER  CB        110.50   123.17   -12.67  1.70e+00  5.56e+01   7.5*sigma
   A 135  HIS  CA
   A 135  HIS  CB
   A 135  HIS  CG        113.80   121.05    -7.25  1.00e+00  5.26e+01   7.3*sigma
   A 129  ARG  C
   A 130  SER  N
   A 130  SER  CA        121.70   134.56   -12.86  1.80e+00  5.10e+01   7.1*sigma
   A 116  ASP  N
   A 116  ASP  CA
   A 116  ASP  CB        110.50    98.36    12.14  1.70e+00  5.10e+01   7.1*sigma
   A 116  ASP  C
   A 116  ASP  CA
   A 116  ASP  CB        110.10   122.45   -12.35  1.90e+00  4.23e+01   6.5*sigma
   A 113  LYS  CA
   A 113  LYS  C
   A 114  PRO  N         116.90   126.58    -9.68  1.50e+00  4.17e+01   6.5*sigma
   A 134  HIS  C
   A 135  HIS  N
   A 135  HIS  CA        121.70   133.29   -11.59  1.80e+00  4.15e+01   6.4*sigma
   A 116  ASP  CA
   A 116  ASP  CB
   A 116  ASP  CG        112.60   119.01    -6.41  1.00e+00  4.10e+01   6.4*sigma
   A 116  ASP  CA
   A 116  ASP  C
   A 117  PRO  N         116.90   108.02     8.88  1.50e+00  3.50e+01   5.9*sigma
   A 117  PRO  O
   A 117  PRO  C
   A 118  ASP  N         123.00   113.89     9.11  1.60e+00  3.24e+01   5.7*sigma
   A 135  HIS  N
   A 135  HIS  CA
   A 135  HIS  CB        110.50   119.93    -9.43  1.70e+00  3.08e+01   5.5*sigma
   A 138  HIS  C
   A 139  HIS  N
   A 139  HIS  CA        121.70   131.59    -9.89  1.80e+00  3.02e+01   5.5*sigma
   A 134  HIS  O
   A 134  HIS  C
   A 135  HIS  N         123.00   114.44     8.56  1.60e+00  2.86e+01   5.3*sigma
   A 133  GLU  CA
   A 133  GLU  CB
   A 133  GLU  CG        114.10   124.04    -9.94  2.00e+00  2.47e+01   5.0*sigma
   A 137  HIS  N
   A 137  HIS  CA
   A 137  HIS  C         111.00   124.63   -13.63  2.80e+00  2.37e+01   4.9*sigma
   A  51  ILE  CA
   A  51  ILE  C
   A  52  PRO  N         116.90   123.58    -6.68  1.50e+00  1.98e+01   4.5*sigma
   A 136  HIS  ND1
   A 136  HIS  CG
   A 136  HIS  CD2       106.10   110.54    -4.44  1.00e+00  1.98e+01   4.4*sigma
   A 131  ILE  CA
   A 131  ILE  CB
   A 131  ILE  CG2       110.50   118.02    -7.52  1.70e+00  1.96e+01   4.4*sigma
   A 129  ARG  O
   A 129  ARG  C
   A 130  SER  N         123.00   116.12     6.88  1.60e+00  1.85e+01   4.3*sigma
   A 116  ASP  CA
   A 116  ASP  C
   A 116  ASP  O         120.80   127.99    -7.19  1.70e+00  1.79e+01   4.2*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.32    -4.22  1.00e+00  1.78e+01   4.2*sigma
   A  43  HIS  ND1
   A  43  HIS  CG
   A  43  HIS  CD2       106.10   110.23    -4.13  1.00e+00  1.71e+01   4.1*sigma
   A 136  HIS  N
   A 136  HIS  CA
   A 136  HIS  CB        110.50   117.32    -6.82  1.70e+00  1.61e+01   4.0*sigma

  Min. delta:    0.000 (Z=  0.000)
  Max. delta:   22.751 (Z=  9.770)
  Mean delta:    2.579 (Z=  1.390)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 116  ASP  CA
   A 116  ASP  C
   A 117  PRO  N
   A 117  PRO  CA        180.00  -106.77   -73.23  5.00e+00  2.15e+02  14.6*sigma
   A 132  LEU  CA
   A 132  LEU  C
   A 133  GLU  N
   A 133  GLU  CA        180.00   113.57    66.43  5.00e+00  1.77e+02  13.3*sigma
   A 136  HIS  CA
   A 136  HIS  C
   A 137  HIS  N
   A 137  HIS  CA        180.00   118.99    61.01  5.00e+00  1.49e+02  12.2*sigma
   A 131  ILE  CA
   A 131  ILE  C
   A 132  LEU  N
   A 132  LEU  CA        180.00   124.11    55.89  5.00e+00  1.25e+02  11.2*sigma
   A 115  ALA  CA
   A 115  ALA  C
   A 116  ASP  N
   A 116  ASP  CA        180.00   131.64    48.36  5.00e+00  9.35e+01   9.7*sigma
   A 130  SER  CA
   A 130  SER  C
   A 131  ILE  N
   A 131  ILE  CA        180.00   141.54    38.46  5.00e+00  5.92e+01   7.7*sigma
   A 134  HIS  CA
   A 134  HIS  C
   A 135  HIS  N
   A 135  HIS  CA          0.00    35.06   -35.06  5.00e+00  4.92e+01   7.0*sigma
   A  87  GLY  CA
   A  87  GLY  C
   A  88  ASP  N
   A  88  ASP  CA        180.00   145.00    35.00  5.00e+00  4.90e+01   7.0*sigma
   A  92  THR  CA
   A  92  THR  C
   A  93  LEU  N
   A  93  LEU  CA        180.00   153.13    26.87  5.00e+00  2.89e+01   5.4*sigma
   A 114  PRO  CA
   A 114  PRO  C
   A 115  ALA  N
   A 115  ALA  CA        180.00   154.27    25.73  5.00e+00  2.65e+01   5.1*sigma
   A  97  SER  CA
   A  97  SER  C
   A  98  SER  N
   A  98  SER  CA        180.00   156.56    23.44  5.00e+00  2.20e+01   4.7*sigma
   A 137  HIS  CA
   A 137  HIS  C
   A 138  HIS  N
   A 138  HIS  CA        180.00   157.62    22.38  5.00e+00  2.00e+01   4.5*sigma
   A 133  GLU  CA
   A 133  GLU  C
   A 134  HIS  N
   A 134  HIS  CA        180.00   158.85    21.15  5.00e+00  1.79e+01   4.2*sigma
   A 135  HIS  CA
   A 135  HIS  C
   A 136  HIS  N
   A 136  HIS  CA        180.00   159.87    20.13  5.00e+00  1.62e+01   4.0*sigma

  Min. delta:    0.095
  Max. delta:   73.231
  Mean delta:   14.034

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.619
  Mean delta:    0.135

                       ----------Planar groups----------                       

  atoms                 rms_deltas   delta_max    residual   deviation
   A 135  HIS  CB
   A 135  HIS  CG
   A 135  HIS  ND1
   A 135  HIS  CD2
   A 135  HIS  CE1
   A 135  HIS  NE2           0.079       0.116       93.37   5.8*sigma

  Min. delta:    0.000
  Max. delta:    0.150
  Mean delta:    0.020

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

                       ----------Angle outliers----------                      

   A  98  SER  HA , Angle N-CA-HA, observed: 97.054, delta from target: 12.946
   A 131  ILE  HA , Angle C-CA-HA, observed: 95.863, delta from target: 13.137
   A 117  PRO  HA , Angle N-CA-HA, observed: 96.491, delta from target: 13.509
   A 117  PRO  HA , Angle C-CA-HA, observed: 95.032, delta from target: 13.968
   A 116  ASP  HA , Angle C-CA-HA, observed: 92.004, delta from target: 16.996
   A 117  PRO  HA , Angle CB-CA-HA, observed: 132.152, delta from target: -23.152

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.012   0.066   2241  Z= 0.624
    Angle     :  2.290  23.152   4077  Z= 1.016
    Chirality :  0.135   0.619    176
    Planarity :  0.015   0.150    326
    Dihedral  : 11.616  73.231    768
    Min Nonbonded Distance : 1.717
  
  Molprobity Statistics.
    All-atom Clashscore : 5.86
    Ramachandran Plot:
      Outliers :  9.49 %
      Allowed  :  9.49 %
      Favored  : 81.02 %
    Rotamer:
      Outliers :  0.81 %
      Allowed  :  3.23 %
      Favored  : 95.97 %
    Cbeta Deviations :  6.06 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 1.53 %
      Twisted Proline : 14.29 %
      Twisted General : 5.34 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -0.95 (0.74), residues: 137
    helix:  1.90 (0.63), residues: 59
    sheet:  None (None), residues: 0
    loop : -2.90 (0.71), residues: 78
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.004   0.002   HIS A  43 
   PHE   0.056   0.013   PHE A  15 
   TYR   0.200   0.024   TYR A 105 
   ARG   0.066   0.013   ARG A  21 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.004   0.002   HIS A  43 
   PHE   0.023   0.011   PHE A  45 
   TYR   0.162   0.027   TYR A 105 
   ARG   0.010   0.002   ARG A  21 

                     ----------Asn/Gln/His flips----------                     

  No backwards Asn/Gln/His sidechains found.

=================================== Summary ===================================


End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000 (Z=  0.000)
  Max. delta:    0.061 (Z=  3.381)
  Mean delta:    0.016 (Z=  0.852)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 101  LYS  CA
   A 101  LYS  C
   A 102  PRO  N         116.90   127.53   -10.63  1.50e+00  5.02e+01   7.1*sigma
   A 114  PRO  N
   A 114  PRO  CA
   A 114  PRO  C         112.10   127.29   -15.19  2.50e+00  3.69e+01   6.1*sigma
   A 113  LYS  CG
   A 113  LYS  CD
   A 113  LYS  CE        111.30   124.08   -12.78  2.30e+00  3.09e+01   5.6*sigma
   A 138  HIS  CB
   A 138  HIS  CG
   A 138  HIS  ND1       122.70   114.63     8.07  1.50e+00  2.90e+01   5.4*sigma
   A 102  PRO  C
   A 102  PRO  CA
   A 102  PRO  CB        110.10   100.35     9.75  1.90e+00  2.64e+01   5.1*sigma
   A  43  HIS  CB
   A  43  HIS  CG
   A  43  HIS  CD2       131.20   124.68     6.52  1.30e+00  2.52e+01   5.0*sigma
   A 115  ALA  C
   A 116  ASP  N
   A 116  ASP  CA        121.70   130.55    -8.85  1.80e+00  2.42e+01   4.9*sigma
   A 111  TYR  CA
   A 111  TYR  CB
   A 111  TYR  CG        113.90   105.16     8.74  1.80e+00  2.36e+01   4.9*sigma
   A 134  HIS  ND1
   A 134  HIS  CG
   A 134  HIS  CD2       106.10   110.65    -4.55  1.00e+00  2.07e+01   4.5*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   110.63    -4.53  1.00e+00  2.05e+01   4.5*sigma
   A  53  LEU  CA
   A  53  LEU  C
   A  54  PRO  N         116.90   123.67    -6.77  1.50e+00  2.04e+01   4.5*sigma
   A  51  ILE  CA
   A  51  ILE  C
   A  52  PRO  N         116.90   123.67    -6.77  1.50e+00  2.04e+01   4.5*sigma
   A  99  LEU  N
   A  99  LEU  CA
   A  99  LEU  CB        110.50   118.12    -7.62  1.70e+00  2.01e+01   4.5*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.26    -4.16  1.00e+00  1.73e+01   4.2*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.23    -4.13  1.00e+00  1.71e+01   4.1*sigma
   A 136  HIS  ND1
   A 136  HIS  CG
   A 136  HIS  CD2       106.10   110.22    -4.12  1.00e+00  1.70e+01   4.1*sigma
   A  66  GLN  OE1
   A  66  GLN  CD
   A  66  GLN  NE2       122.60   118.55     4.05  1.00e+00  1.64e+01   4.0*sigma
   A  33  ALA  C
   A  33  ALA  CA
   A  33  ALA  CB        110.50   116.54    -6.04  1.50e+00  1.62e+01   4.0*sigma

  Min. delta:    0.000 (Z=  0.000)
  Max. delta:   15.185 (Z=  7.087)
  Mean delta:    2.347 (Z=  1.292)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 113  LYS  CA
   A 113  LYS  C
   A 114  PRO  N
   A 114  PRO  CA        180.00  -146.95   -33.05  5.00e+00  4.37e+01   6.6*sigma
   A  96  GLY  CA
   A  96  GLY  C
   A  97  SER  N
   A  97  SER  CA        180.00   156.65    23.35  5.00e+00  2.18e+01   4.7*sigma
   A 117  PRO  CA
   A 117  PRO  C
   A 118  ASP  N
   A 118  ASP  CA        180.00   158.31    21.69  5.00e+00  1.88e+01   4.3*sigma

  Min. delta:    0.055
  Max. delta:   74.898
  Mean delta:   11.122

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.002
  Max. delta:    0.637
  Mean delta:    0.120

                       ----------Planar groups----------                       

  atoms                 rms_deltas   delta_max    residual   deviation
   A 105  TYR  CB
   A 105  TYR  CG
   A 105  TYR  CD1
   A 105  TYR  CD2
   A 105  TYR  CE1
   A 105  TYR  CE2
   A 105  TYR  CZ
   A 105  TYR  OH            0.061       0.115       74.17   5.8*sigma
   A 111  TYR  CB
   A 111  TYR  CG
   A 111  TYR  CD1
   A 111  TYR  CD2
   A 111  TYR  CE1
   A 111  TYR  CE2
   A 111  TYR  CZ
   A 111  TYR  OH            0.094       0.097      176.61   4.9*sigma

  Min. delta:    0.000
  Max. delta:    0.094
  Mean delta:    0.015

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

                       ----------Angle outliers----------                      

   A 114  PRO  HA , Angle CB-CA-HA, observed: 121.763, delta from target: -12.763
   A  99  LEU  HA , Angle N-CA-HA, observed: 96.410, delta from target: 13.590
   A 114  PRO  HA , Angle C-CA-HA, observed: 89.745, delta from target: 19.255

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.011   0.061   2241  Z= 0.606
    Angle     :  2.095  19.255   4077  Z= 0.942
    Chirality :  0.120   0.637    176
    Planarity :  0.012   0.093    326
    Dihedral  :  9.788  74.898    768
    Min Nonbonded Distance : 1.742
  
  Molprobity Statistics.
    All-atom Clashscore : 1.35
    Ramachandran Plot:
      Outliers :  3.65 %
      Allowed  : 10.22 %
      Favored  : 86.13 %
    Rotamer:
      Outliers :  0.81 %
      Allowed  :  0.00 %
      Favored  : 99.19 %
    Cbeta Deviations :  4.55 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.00 %
      Twisted Proline : 14.29 %
      Twisted General : 0.00 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -0.51 (0.72), residues: 137
    helix:  1.91 (0.58), residues: 69
    sheet:  None (None), residues: 0
    loop : -2.99 (0.71), residues: 68
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.005   0.002   HIS A 139 
   PHE   0.064   0.017   PHE A  45 
   TYR   0.237   0.030   TYR A 111 
   ARG   0.037   0.010   ARG A 127 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.005   0.002   HIS A 139 
   PHE   0.039   0.015   PHE A  45 
   TYR   0.185   0.030   TYR A 111 
   ARG   0.010   0.003   ARG A 129 

                     ----------Asn/Gln/His flips----------                     

   A  43  HIS
   A 100  GLN

=================================== Summary ===================================

  Ramachandran outliers =   4.38 %
                favored =  82.48 %
  Rotamer outliers      =   0.00 %
  C-beta deviations     =     2
  Clashscore            =   2.26
  RMS(bonds)            =   0.0119
  RMS(angles)           =   2.05
  MolProbity score      =   1.70

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py
  Ramachandran outliers =   6.57 %
                favored =  82.48 %
  Rotamer outliers      =   0.00 %
  C-beta deviations     =     4
  Clashscore            =  10.83
  RMS(bonds)            =   0.0129
  RMS(angles)           =   2.23
  MolProbity score      =   2.25

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py

End of input processing

=============================== Model properties ==============================


End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  atoms                 ideal   model   delta   sigma   slack  residual   deviation
   A  21  ARG  CD
   A  21  ARG  NE          1.46     1.51    -0.06  1.40e-02  1.65e+01   4.1*sigma

  Min. delta:    0.000 (Z=  0.001)
  Max. delta:    0.059 (Z=  4.066)
  Mean delta:    0.016 (Z=  0.847)

                        ----------Bond angles----------                        

  atoms                 ideal   model   delta   sigma   slack  residual   deviation
   A  30  ILE  C
   A  31  LEU  N           1.33     1.39    -0.06  1.40e-02  1.94e+01   4.4*sigma
   A  30  ILE  N
   A  30  ILE  CA          1.46     1.38     0.08  1.90e-02  1.76e+01   4.2*sigma

  Min. delta:    0.000 (Z=  0.002)
  Max. delta:    0.080 (Z=  4.400)
  Mean delta:    0.017 (Z=  0.894)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 135  HIS  C
   A 136  HIS  N
   A 136  HIS  CA        121.70   134.72   -13.02  1.80e+00  5.23e+01   7.2*sigma
   A 135  HIS  C
   A 135  HIS  CA
   A 135  HIS  CB        110.10   121.31   -11.21  1.90e+00  3.48e+01   5.9*sigma
   A 137  HIS  CA
   A 137  HIS  CB
   A 137  HIS  CG        113.80   119.42    -5.62  1.00e+00  3.16e+01   5.6*sigma
   A 116  ASP  CA
   A 116  ASP  C
   A 117  PRO  N         116.90   124.92    -8.02  1.50e+00  2.86e+01   5.3*sigma
   A 135  HIS  O
   A 135  HIS  C
   A 136  HIS  N         123.00   114.62     8.38  1.60e+00  2.74e+01   5.2*sigma
   A 113  LYS  CA
   A 113  LYS  C
   A 114  PRO  N         116.90   124.56    -7.66  1.50e+00  2.61e+01   5.1*sigma
   A 135  HIS  CA
   A 135  HIS  C
   A 136  HIS  N         116.20   126.26   -10.06  2.00e+00  2.53e+01   5.0*sigma
   A  43  HIS  ND1
   A  43  HIS  CG
   A  43  HIS  CD2       106.10   110.76    -4.66  1.00e+00  2.17e+01   4.7*sigma
   A 136  HIS  ND1
   A 136  HIS  CG
   A 136  HIS  CD2       106.10   110.67    -4.57  1.00e+00  2.09e+01   4.6*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   110.65    -4.55  1.00e+00  2.07e+01   4.6*sigma
   A 138  HIS  ND1
   A 138  HIS  CG
   A 138  HIS  CD2       106.10   110.60    -4.50  1.00e+00  2.03e+01   4.5*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.49    -4.39  1.00e+00  1.93e+01   4.4*sigma
   A 101  LYS  CA
   A 101  LYS  C
   A 102  PRO  N         116.90   123.45    -6.55  1.50e+00  1.91e+01   4.4*sigma
   A 123  GLU  N
   A 123  GLU  CA
   A 123  GLU  CB        110.50   117.84    -7.34  1.70e+00  1.87e+01   4.3*sigma
   A  43  HIS  C
   A  43  HIS  CA
   A  43  HIS  CB        110.10   102.01     8.09  1.90e+00  1.81e+01   4.3*sigma
   A  88  ASP  CA
   A  88  ASP  CB
   A  88  ASP  CG        112.60   116.80    -4.20  1.00e+00  1.77e+01   4.2*sigma
   A  51  ILE  CA
   A  51  ILE  C
   A  52  PRO  N         116.90   123.20    -6.30  1.50e+00  1.76e+01   4.2*sigma
   A   5  THR  CA
   A   5  THR  C
   A   6  PRO  N         116.90   123.13    -6.23  1.50e+00  1.73e+01   4.2*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.24    -4.14  1.00e+00  1.71e+01   4.1*sigma
   A 136  HIS  N
   A 136  HIS  CA
   A 136  HIS  CB        110.50   117.42    -6.92  1.70e+00  1.66e+01   4.1*sigma
   A 135  HIS  N
   A 135  HIS  CA
   A 135  HIS  C         111.00    99.62    11.38  2.80e+00  1.65e+01   4.1*sigma
   A 134  HIS  ND1
   A 134  HIS  CG
   A 134  HIS  CD2       106.10   110.12    -4.02  1.00e+00  1.62e+01   4.0*sigma

  Min. delta:    0.001 (Z=  0.000)
  Max. delta:   13.021 (Z=  7.234)
  Mean delta:    2.256 (Z=  1.267)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  30  ILE  N
   A  30  ILE  CA
   A  30  ILE  CB        111.50    97.10    14.40  1.70e+00  7.17e+01   8.5*sigma
   A 116  ASP  CA
   A 116  ASP  C
   A 117  PRO  N         116.90   128.44   -11.54  1.50e+00  5.92e+01   7.7*sigma
   A  51  ILE  CA
   A  51  ILE  C
   A  52  PRO  N         116.90   126.07    -9.17  1.50e+00  3.74e+01   6.1*sigma
   A  53  LEU  CA
   A  53  LEU  C
   A  54  PRO  N         116.90   125.28    -8.38  1.50e+00  3.12e+01   5.6*sigma
   A   3  LEU  C
   A   4  ILE  N
   A   4  ILE  CA        121.70   131.62    -9.92  1.80e+00  3.04e+01   5.5*sigma
   A 113  LYS  CA
   A 113  LYS  C
   A 114  PRO  N         116.90   124.28    -7.38  1.50e+00  2.42e+01   4.9*sigma
   A  43  HIS  ND1
   A  43  HIS  CG
   A  43  HIS  CD2       106.10   110.83    -4.73  1.00e+00  2.24e+01   4.7*sigma
   A 116  ASP  O
   A 116  ASP  C
   A 117  PRO  N         123.00   115.49     7.51  1.60e+00  2.20e+01   4.7*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.61    -4.51  1.00e+00  2.04e+01   4.5*sigma
   A 115  ALA  C
   A 116  ASP  N
   A 116  ASP  CA        121.70   129.70    -8.00  1.80e+00  1.98e+01   4.4*sigma
   A 138  HIS  ND1
   A 138  HIS  CG
   A 138  HIS  CD2       106.10   110.47    -4.37  1.00e+00  1.91e+01   4.4*sigma
   A  95  ASP  CA
   A  95  ASP  CB
   A  95  ASP  CG        112.60   116.95    -4.35  1.00e+00  1.89e+01   4.4*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.44    -4.34  1.00e+00  1.88e+01   4.3*sigma
   A 136  HIS  ND1
   A 136  HIS  CG
   A 136  HIS  CD2       106.10   110.42    -4.32  1.00e+00  1.87e+01   4.3*sigma
   A 134  HIS  ND1
   A 134  HIS  CG
   A 134  HIS  CD2       106.10   110.42    -4.32  1.00e+00  1.87e+01   4.3*sigma
   A  30  ILE  CA
   A  30  ILE  CB
   A  30  ILE  CG1       110.40   117.66    -7.26  1.70e+00  1.82e+01   4.3*sigma
   A 101  LYS  CA
   A 101  LYS  C
   A 102  PRO  N         116.90   123.29    -6.39  1.50e+00  1.82e+01   4.3*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   110.28    -4.18  1.00e+00  1.74e+01   4.2*sigma
   A  21  ARG  CA
   A  21  ARG  C
   A  22  PRO  N         116.90   123.14    -6.24  1.50e+00  1.73e+01   4.2*sigma
   A   5  THR  O
   A   5  THR  C
   A   6  PRO  N         123.00   116.39     6.61  1.60e+00  1.71e+01   4.1*sigma
   A  95  ASP  O
   A  95  ASP  C
   A  96  GLY  N         123.00   116.40     6.60  1.60e+00  1.70e+01   4.1*sigma
   A  52  PRO  N
   A  52  PRO  CD
   A  52  PRO  CG        103.20   109.38    -6.18  1.50e+00  1.70e+01   4.1*sigma
   A  29  ASP  CA
   A  29  ASP  C
   A  29  ASP  O         120.80   127.64    -6.84  1.70e+00  1.62e+01   4.0*sigma
   A 139  HIS  ND1
   A 139  HIS  CE1
   A 139  HIS  NE2       108.40   112.42    -4.02  1.00e+00  1.61e+01   4.0*sigma

  Min. delta:    0.001 (Z=  0.000)
  Max. delta:   14.396 (Z=  8.468)
  Mean delta:    2.327 (Z=  1.306)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 138  HIS  CA
   A 138  HIS  C
   A 139  HIS  N
   A 139  HIS  CA        180.00   102.99    77.01  5.00e+00  2.37e+02  15.4*sigma
   A 137  HIS  CA
   A 137  HIS  C
   A 138  HIS  N
   A 138  HIS  CA        180.00   115.32    64.68  5.00e+00  1.67e+02  12.9*sigma
   A 121  GLY  CA
   A 121  GLY  C
   A 122  ILE  N
   A 122  ILE  CA        180.00   144.09    35.91  5.00e+00  5.16e+01   7.2*sigma
   A 134  HIS  CA
   A 134  HIS  C
   A 135  HIS  N
   A 135  HIS  CA        180.00   148.62    31.38  5.00e+00  3.94e+01   6.3*sigma
   A 135  HIS  CA
   A 135  HIS  C
   A 136  HIS  N
   A 136  HIS  CA          0.00    29.38   -29.38  5.00e+00  3.45e+01   5.9*sigma
   A 120  GLU  CA
   A 120  GLU  C
   A 121  GLY  N
   A 121  GLY  CA        180.00   156.98    23.02  5.00e+00  2.12e+01   4.6*sigma
   A 123  GLU  CA
   A 123  GLU  C
   A 124  ALA  N
   A 124  ALA  CA        180.00   158.01    21.99  5.00e+00  1.93e+01   4.4*sigma
   A 136  HIS  CA
   A 136  HIS  C
   A 137  HIS  N
   A 137  HIS  CA        180.00   159.54    20.46  5.00e+00  1.67e+01   4.1*sigma

  Min. delta:    0.003
  Max. delta:   77.007
  Mean delta:   12.140

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.428
  Mean delta:    0.099

                       ----------Planar groups----------                       

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  52  PRO  CA
   A  52  PRO  C
   A  53  LEU  N
   A  53  LEU  CA        180.00   150.39    29.61  5.00e+00  3.51e+01   5.9*sigma
   A  21  ARG  CA
   A  21  ARG  C
   A  22  PRO  N
   A  22  PRO  CA        180.00   156.92    23.08  5.00e+00  2.13e+01   4.6*sigma
   A  90  SER  CA
   A  90  SER  C
   A  91  TYR  N
   A  91  TYR  CA        180.00   159.32    20.68  5.00e+00  1.71e+01   4.1*sigma
   A   4  ILE  CA
   A   4  ILE  C
   A   5  THR  N
   A   5  THR  CA        180.00   159.39    20.61  5.00e+00  1.70e+01   4.1*sigma

  Min. delta:    0.000
  Max. delta:   70.783
  Mean delta:   11.132

                       ----------Chiral volumes----------                      

  atoms                 rms_deltas   delta_max    residual   deviation
   A 136  HIS  CB
   A 136  HIS  CG
   A 136  HIS  ND1
   A 136  HIS  CD2
   A 136  HIS  CE1
   A 136  HIS  NE2           0.060       0.086       54.85   4.3*sigma
   A 111  TYR  CB
   A 111  TYR  CG
   A 111  TYR  CD1
   A 111  TYR  CD2
   A 111  TYR  CE1
   A 111  TYR  CE2
   A 111  TYR  CZ
   A 111  TYR  OH            0.076       0.085      114.92   4.2*sigma

  Min. delta:    0.000
  Max. delta:    0.076
  Mean delta:    0.015

============================= Hydrogen validation =============================

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.775
  Mean delta:    0.117

                       ----------Planar groups----------                       


                ----------H/D atoms in the input model----------               

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.094
  Mean delta:    0.014

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

                       ----------Angle outliers----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

   A 135  HIS  HA , Angle CB-CA-HA, observed: 95.022, delta from target: 13.978
   A 137  HIS  HA , Angle N-CA-HA, observed: 95.803, delta from target: 14.197

============================ Molprobity validation ============================

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

                       ----------Angle outliers----------                      

   A   2  LEU  HG , Angle CB-CG-HG, observed: 95.528, delta from target: 13.472

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.011   0.059   2241  Z= 0.603
    Angle     :  2.003  14.197   4077  Z= 0.915
    Chirality :  0.099   0.428    176
    Planarity :  0.011   0.082    326
    Dihedral  : 10.303  77.007    768
    Min Nonbonded Distance : 1.692
  
  Molprobity Statistics.
    All-atom Clashscore : 1.35
    Ramachandran Plot:
      Outliers :  3.65 %
      Allowed  : 10.22 %
      Favored  : 86.13 %
    Rotamer:
      Outliers :  0.00 %
      Allowed  :  0.00 %
      Favored  : 100.00 %
    Cbeta Deviations :  2.27 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.76 %
      Twisted Proline : 0.00 %
      Twisted General : 3.05 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -0.49 (0.72), residues: 137
    helix:  1.39 (0.59), residues: 67
    sheet:  None (None), residues: 0
    loop : -2.19 (0.76), residues: 70
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.005   0.002   HIS A 135 
   PHE   0.044   0.011   PHE A  45 
   TYR   0.201   0.028   TYR A 111 
   ARG   0.076   0.014   ARG A  58 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.005   0.002   HIS A 135 
   PHE   0.024   0.009   PHE A  67 
   TYR   0.142   0.027   TYR A 111 
   ARG   0.038   0.007   ARG A  58 

                     ----------Asn/Gln/His flips----------                     

  No backwards Asn/Gln/His sidechains found.

=================================== Summary ===================================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.012   0.080   2241  Z= 0.636
    Angle     :  2.049  14.396   4077  Z= 0.940
    Chirality :  0.117   0.775    176
    Planarity :  0.011   0.094    326
    Dihedral  : 10.965  80.042    768
    Min Nonbonded Distance : 1.511
  
  Molprobity Statistics.
    All-atom Clashscore : 6.77
    Ramachandran Plot:
      Outliers :  3.65 %
      Allowed  : 12.41 %
      Favored  : 83.94 %
    Rotamer:
      Outliers :  0.81 %
      Allowed  :  0.00 %
      Favored  : 99.19 %
    Cbeta Deviations :  0.76 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.00 %
      Twisted Proline : 0.00 %
      Twisted General : 0.00 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -0.97 (0.69), residues: 137
    helix:  1.21 (0.55), residues: 71
    sheet:  None (None), residues: 0
    loop : -2.94 (0.72), residues: 66
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.009   0.002   HIS A 138 
   PHE   0.077   0.019   PHE A  45 
   TYR   0.154   0.024   TYR A  12 
   ARG   0.020   0.005   ARG A  58 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.009   0.002   HIS A 138 
   PHE   0.042   0.015   PHE A  15 
   TYR   0.093   0.022   TYR A  12 
   ARG   0.009   0.002   ARG A  58 

                     ----------Asn/Gln/His flips----------                     

  No backwards Asn/Gln/His sidechains found.

=================================== Summary ===================================


End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000 (Z=  0.001)
  Max. delta:    0.051 (Z=  3.567)
  Mean delta:    0.016 (Z=  0.849)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 113  LYS  CA
   A 113  LYS  C
   A 114  PRO  N         116.90   127.02   -10.12  1.50e+00  4.55e+01   6.7*sigma
   A  43  HIS  C
   A  43  HIS  CA
   A  43  HIS  CB        110.10   100.68     9.42  1.90e+00  2.46e+01   5.0*sigma
   A  43  HIS  ND1
   A  43  HIS  CG
   A  43  HIS  CD2       106.10   110.99    -4.89  1.00e+00  2.39e+01   4.9*sigma
   A 138  HIS  ND1
   A 138  HIS  CG
   A 138  HIS  CD2       106.10   110.81    -4.71  1.00e+00  2.22e+01   4.7*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   110.76    -4.66  1.00e+00  2.18e+01   4.7*sigma
   A  53  LEU  CA
   A  53  LEU  C
   A  54  PRO  N         116.90   123.78    -6.88  1.50e+00  2.11e+01   4.6*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.65    -4.55  1.00e+00  2.07e+01   4.5*sigma
   A 116  ASP  CA
   A 116  ASP  C
   A 117  PRO  N         116.90   123.71    -6.81  1.50e+00  2.06e+01   4.5*sigma
   A  51  ILE  CA
   A  51  ILE  C
   A  52  PRO  N         116.90   123.68    -6.78  1.50e+00  2.05e+01   4.5*sigma
   A  21  ARG  CA
   A  21  ARG  C
   A  22  PRO  N         116.90   123.47    -6.57  1.50e+00  1.92e+01   4.4*sigma
   A  42  GLY  C
   A  43  HIS  N
   A  43  HIS  CA        121.70   129.57    -7.87  1.80e+00  1.91e+01   4.4*sigma
   A 127  ARG  N
   A 127  ARG  CA
   A 127  ARG  CB        110.50   117.88    -7.38  1.70e+00  1.88e+01   4.3*sigma
   A  44  ASP  CA
   A  44  ASP  CB
   A  44  ASP  CG        112.60   108.38     4.22  1.00e+00  1.78e+01   4.2*sigma
   A 134  HIS  ND1
   A 134  HIS  CG
   A 134  HIS  CD2       106.10   110.16    -4.06  1.00e+00  1.65e+01   4.1*sigma
   A  76  SER  N
   A  76  SER  CA
   A  76  SER  CB        110.50   117.41    -6.91  1.70e+00  1.65e+01   4.1*sigma

  Min. delta:    0.001 (Z=  0.001)
  Max. delta:   11.842 (Z=  6.745)
  Mean delta:    2.357 (Z=  1.303)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 138  HIS  CA
   A 138  HIS  C
   A 139  HIS  N
   A 139  HIS  CA        180.00    92.80    87.20  5.00e+00  3.04e+02  17.4*sigma
   A 137  HIS  CA
   A 137  HIS  C
   A 138  HIS  N
   A 138  HIS  CA        180.00   126.60    53.40  5.00e+00  1.14e+02  10.7*sigma

  Min. delta:    0.001
  Max. delta:   87.201
  Mean delta:   11.439

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.001
  Max. delta:    0.423
  Mean delta:    0.108

                       ----------Planar groups----------                       

  atoms                 rms_deltas   delta_max    residual   deviation
   A  91  TYR  CB
   A  91  TYR  CG
   A  91  TYR  CD1
   A  91  TYR  CD2
   A  91  TYR  CE1
   A  91  TYR  CE2
   A  91  TYR  CZ
   A  91  TYR  OH            0.075       0.116      112.55   5.8*sigma

  Min. delta:    0.000
  Max. delta:    0.075
  Mean delta:    0.013

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.011   0.051   2241  Z= 0.604
    Angle     :  2.103  11.842   4077  Z= 0.949
    Chirality :  0.108   0.423    176
    Planarity :  0.013   0.137    326
    Dihedral  : 10.716  87.201    768
    Min Nonbonded Distance : 1.645
  
  Molprobity Statistics.
    All-atom Clashscore : 4.51
    Ramachandran Plot:
      Outliers :  2.92 %
      Allowed  : 13.87 %
      Favored  : 83.21 %
    Rotamer:
      Outliers :  0.81 %
      Allowed  :  1.61 %
      Favored  : 97.58 %
    Cbeta Deviations :  0.76 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.00 %
      Twisted Proline : 0.00 %
      Twisted General : 1.53 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -0.72 (0.68), residues: 137
    helix:  1.46 (0.63), residues: 54
    sheet:  None (None), residues: 0
    loop : -1.95 (0.65), residues: 83
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.005   0.002   HIS A  43 
   PHE   0.110   0.036   PHE A  15 
   TYR   0.282   0.030   TYR A  91 
   ARG   0.030   0.009   ARG A  58 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.005   0.002   HIS A  43 
   PHE   0.039   0.017   PHE A  15 
   TYR   0.116   0.021   TYR A  91 
   ARG   0.013   0.004   ARG A 127 

                     ----------Asn/Gln/His flips----------                     

  No backwards Asn/Gln/His sidechains found.

=================================== Summary ===================================

  Ramachandran outliers =   2.19 %
                favored =  83.94 %
  Rotamer outliers      =   0.81 %
  C-beta deviations     =     1
  Clashscore            =   5.41
  RMS(bonds)            =   0.0116
  RMS(angles)           =   2.01
  MolProbity score      =   1.97

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py
  Ramachandran outliers =   2.92 %
                favored =  88.32 %
  Rotamer outliers      =   0.81 %
  C-beta deviations     =     3
  Clashscore            =   0.00
  RMS(bonds)            =   0.0107
  RMS(angles)           =   2.02
  MolProbity score      =   1.09

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py
  Ramachandran outliers =   5.11 %
                favored =  89.05 %
  Rotamer outliers      =   0.81 %
  C-beta deviations     =     4
  Clashscore            =   4.06
  RMS(bonds)            =   0.0114
  RMS(angles)           =   1.99
  MolProbity score      =   1.77

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py
  Ramachandran outliers =   7.30 %
                favored =  78.10 %
  Rotamer outliers      =   0.81 %
  C-beta deviations     =     3
  Clashscore            =   4.96
  RMS(bonds)            =   0.0114
  RMS(angles)           =   2.07
  MolProbity score      =   2.02

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py
  Ramachandran outliers =   3.65 %
                favored =  84.67 %
  Rotamer outliers      =   0.00 %
  C-beta deviations     =     0
  Clashscore            =   1.35
  RMS(bonds)            =   0.0121
  RMS(angles)           =   1.96
  MolProbity score      =   1.53

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py
  Ramachandran outliers =   6.57 %
                favored =  84.67 %
  Rotamer outliers      =   2.42 %
  C-beta deviations     =     1
  Clashscore            =   6.77
  RMS(bonds)            =   0.0114
  RMS(angles)           =   2.05
  MolProbity score      =   2.33

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py
  Ramachandran outliers =   2.92 %
                favored =  86.13 %
  Rotamer outliers      =   0.00 %
  C-beta deviations     =     2
  Clashscore            =   6.31
  RMS(bonds)            =   0.0113
  RMS(angles)           =   2.10
  MolProbity score      =   1.99

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py
  Ramachandran outliers =   2.19 %
                favored =  86.13 %
  Rotamer outliers      =   0.00 %
  C-beta deviations     =     3
  Clashscore            =   2.26
  RMS(bonds)            =   0.0115
  RMS(angles)           =   1.95
  MolProbity score      =   1.64

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py
  Ramachandran outliers =   5.11 %
                favored =  83.94 %
  Rotamer outliers      =   0.00 %
  C-beta deviations     =     3
  Clashscore            =   4.96
  RMS(bonds)            =   0.0114
  RMS(angles)           =   2.01
  MolProbity score      =   1.94

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py
  Ramachandran outliers =   5.84 %
                favored =  83.94 %
  Rotamer outliers      =   0.00 %
  C-beta deviations     =     3
  Clashscore            =   1.80
  RMS(bonds)            =   0.0116
  RMS(angles)           =   2.06
  MolProbity score      =   1.62

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py

End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  atoms                 ideal   model   delta   sigma   slack  residual   deviation
   A 134  HIS  CE1
   A 134  HIS  NE2         1.32     1.36    -0.04  1.00e-02  1.79e+01   4.2*sigma
   A 137  HIS  CE1
   A 137  HIS  NE2         1.32     1.36    -0.04  1.00e-02  1.63e+01   4.0*sigma
   A 138  HIS  CE1
   A 138  HIS  NE2         1.32     1.36    -0.04  1.00e-02  1.62e+01   4.0*sigma

  Min. delta:    0.000 (Z=  0.002)
  Max. delta:    0.057 (Z=  4.236)
  Mean delta:    0.017 (Z=  0.914)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  30  ILE  CA
   A  30  ILE  CB
   A  30  ILE  CG1       110.40   122.83   -12.43  1.70e+00  5.35e+01   7.3*sigma
   A 114  PRO  N
   A 114  PRO  CA
   A 114  PRO  C         112.10   125.43   -13.33  2.50e+00  2.84e+01   5.3*sigma
   A 114  PRO  N
   A 114  PRO  CD
   A 114  PRO  CG        103.20   110.65    -7.45  1.50e+00  2.47e+01   5.0*sigma
   A 134  HIS  ND1
   A 134  HIS  CG
   A 134  HIS  CD2       106.10   110.82    -4.72  1.00e+00  2.23e+01   4.7*sigma
   A 113  LYS  C
   A 113  LYS  CA
   A 113  LYS  CB        110.10   118.79    -8.69  1.90e+00  2.09e+01   4.6*sigma
   A 134  HIS  CA
   A 134  HIS  CB
   A 134  HIS  CG        113.80   118.22    -4.42  1.00e+00  1.95e+01   4.4*sigma
   A  30  ILE  CA
   A  30  ILE  CB
   A  30  ILE  CG2       110.50   102.99     7.51  1.70e+00  1.95e+01   4.4*sigma
   A 136  HIS  CB
   A 136  HIS  CG
   A 136  HIS  ND1       122.70   116.34     6.36  1.50e+00  1.80e+01   4.2*sigma
   A 135  HIS  ND1
   A 135  HIS  CE1
   A 135  HIS  NE2       108.40   112.63    -4.23  1.00e+00  1.79e+01   4.2*sigma
   A 134  HIS  ND1
   A 134  HIS  CE1
   A 134  HIS  NE2       108.40   112.61    -4.21  1.00e+00  1.77e+01   4.2*sigma
   A  97  SER  C
   A  98  SER  N
   A  98  SER  CA        121.70   129.14    -7.44  1.80e+00  1.71e+01   4.1*sigma
   A 114  PRO  CA
   A 114  PRO  N
   A 114  PRO  CD        112.00   106.21     5.79  1.40e+00  1.71e+01   4.1*sigma
   A  21  ARG  CA
   A  21  ARG  C
   A  22  PRO  N         116.90   123.09    -6.19  1.50e+00  1.70e+01   4.1*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.22    -4.12  1.00e+00  1.70e+01   4.1*sigma
   A   2  LEU  CB
   A   2  LEU  CG
   A   2  LEU  CD1       110.70   122.99   -12.29  3.00e+00  1.68e+01   4.1*sigma
   A  14  VAL  CA
   A  14  VAL  CB
   A  14  VAL  CG1       110.40   117.34    -6.94  1.70e+00  1.67e+01   4.1*sigma
   A 138  HIS  ND1
   A 138  HIS  CG
   A 138  HIS  CD2       106.10   110.14    -4.04  1.00e+00  1.63e+01   4.0*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.14    -4.04  1.00e+00  1.63e+01   4.0*sigma
   A 138  HIS  ND1
   A 138  HIS  CE1
   A 138  HIS  NE2       108.40   112.40    -4.00  1.00e+00  1.60e+01   4.0*sigma

  Min. delta:    0.001 (Z=  0.001)
  Max. delta:   13.326 (Z=  7.312)
  Mean delta:    2.253 (Z=  1.233)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  91  TYR  CA
   A  91  TYR  C
   A  92  THR  N
   A  92  THR  CA        180.00   150.02    29.98  5.00e+00  3.60e+01   6.0*sigma
   A  87  GLY  CA
   A  87  GLY  C
   A  88  ASP  N
   A  88  ASP  CA        180.00   154.77    25.23  5.00e+00  2.55e+01   5.0*sigma
   A 117  PRO  CA
   A 117  PRO  C
   A 118  ASP  N
   A 118  ASP  CA        180.00   157.71    22.29  5.00e+00  1.99e+01   4.5*sigma
   A  92  THR  CA
   A  92  THR  C
   A  93  LEU  N
   A  93  LEU  CA        180.00   158.44    21.56  5.00e+00  1.86e+01   4.3*sigma

  Min. delta:    0.005
  Max. delta:   78.308
  Mean delta:    9.704

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.002
  Max. delta:    0.469
  Mean delta:    0.112

                       ----------Planar groups----------                       

  atoms                 rms_deltas   delta_max    residual   deviation
   A  50  TYR  CB
   A  50  TYR  CG
   A  50  TYR  CD1
   A  50  TYR  CD2
   A  50  TYR  CE1
   A  50  TYR  CE2
   A  50  TYR  CZ
   A  50  TYR  OH            0.045       0.085       41.34   4.3*sigma

  Min. delta:    0.000
  Max. delta:    0.096
  Mean delta:    0.013

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

                       ----------Angle outliers----------                      

   A 114  PRO  HA , Angle CB-CA-HA, observed: 121.751, delta from target: -12.751
   A 114  PRO  HA , Angle C-CA-HA, observed: 95.972, delta from target: 13.028
   A  30  ILE  HB , Angle CG1-CB-HB, observed: 95.678, delta from target: 13.322

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.012   0.057   2241  Z= 0.651
    Angle     :  2.043  13.326   4077  Z= 0.908
    Chirality :  0.112   0.469    176
    Planarity :  0.011   0.096    326
    Dihedral  :  8.481  78.308    768
    Min Nonbonded Distance : 1.722
  
  Molprobity Statistics.
    All-atom Clashscore : 7.67
    Ramachandran Plot:
      Outliers :  3.65 %
      Allowed  : 14.60 %
      Favored  : 81.75 %
    Rotamer:
      Outliers :  0.81 %
      Allowed  :  2.42 %
      Favored  : 96.77 %
    Cbeta Deviations :  1.52 %
    Peptide Plane:
      Cis-proline     : 14.29 %
      Cis-general     : 0.00 %
      Twisted Proline : 0.00 %
      Twisted General : 0.00 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole:  0.08 (0.71), residues: 137
    helix:  1.60 (0.56), residues: 65
    sheet:  None (None), residues: 0
    loop : -1.50 (0.77), residues: 72
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.002   0.001   HIS A  43 
   PHE   0.079   0.024   PHE A  15 
   TYR   0.101   0.022   TYR A  50 
   ARG   0.020   0.004   ARG A  58 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.002   0.001   HIS A  43 
   PHE   0.029   0.012   PHE A  15 
   TYR   0.085   0.021   TYR A  50 
   ARG   0.009   0.002   ARG A  58 

                     ----------Asn/Gln/His flips----------                     

  No backwards Asn/Gln/His sidechains found.

=================================== Summary ===================================

  Ramachandran outliers =   3.65 %
                favored =  89.05 %
  Rotamer outliers      =   0.00 %
  C-beta deviations     =     1
  Clashscore            =   3.16
  RMS(bonds)            =   0.0112
  RMS(angles)           =   1.98
  MolProbity score      =   1.68

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py
  Ramachandran outliers =   2.92 %
                favored =  94.16 %
  Rotamer outliers      =   0.81 %
  C-beta deviations     =     1
  Clashscore            =   5.41
  RMS(bonds)            =   0.0112
  RMS(angles)           =   1.98
  MolProbity score      =   1.69

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py
  Ramachandran outliers =   1.46 %
                favored =  83.21 %
  Rotamer outliers      =   0.81 %
  C-beta deviations     =     4
  Clashscore            =   9.92
  RMS(bonds)            =   0.0123
  RMS(angles)           =   2.14
  MolProbity score      =   2.21

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py
  Ramachandran outliers =   2.19 %
                favored =  86.86 %
  Rotamer outliers      =   0.00 %
  C-beta deviations     =     1
  Clashscore            =   2.26
  RMS(bonds)            =   0.0113
  RMS(angles)           =   2.02
  MolProbity score      =   1.63

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py

End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000 (Z=  0.000)
  Max. delta:    0.048 (Z=  3.550)
  Mean delta:    0.016 (Z=  0.848)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 135  HIS  C
   A 136  HIS  N
   A 136  HIS  CA        121.70   133.15   -11.45  1.80e+00  4.04e+01   6.4*sigma
   A  13  SER  C
   A  14  VAL  N
   A  14  VAL  CA        121.70   132.70   -11.00  1.80e+00  3.73e+01   6.1*sigma
   A 135  HIS  O
   A 135  HIS  C
   A 136  HIS  N         123.00   113.54     9.46  1.60e+00  3.49e+01   5.9*sigma
   A 139  HIS  N
   A 139  HIS  CA
   A 139  HIS  CB        110.50   119.41    -8.91  1.70e+00  2.75e+01   5.2*sigma
   A 130  SER  C
   A 131  ILE  N
   A 131  ILE  CA        121.70   130.16    -8.46  1.80e+00  2.21e+01   4.7*sigma
   A 135  HIS  CA
   A 135  HIS  CB
   A 135  HIS  CG        113.80   118.42    -4.62  1.00e+00  2.13e+01   4.6*sigma
   A 136  HIS  ND1
   A 136  HIS  CG
   A 136  HIS  CD2       106.10   110.70    -4.60  1.00e+00  2.12e+01   4.6*sigma
   A 130  SER  C
   A 130  SER  CA
   A 130  SER  CB        110.10   118.55    -8.45  1.90e+00  1.98e+01   4.4*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.49    -4.39  1.00e+00  1.92e+01   4.4*sigma
   A 130  SER  O
   A 130  SER  C
   A 131  ILE  N         123.00   116.02     6.98  1.60e+00  1.91e+01   4.4*sigma
   A 135  HIS  CA
   A 135  HIS  C
   A 136  HIS  N         116.20   124.93    -8.73  2.00e+00  1.90e+01   4.4*sigma
   A  13  SER  N
   A  13  SER  CA
   A  13  SER  C         111.00   123.11   -12.11  2.80e+00  1.87e+01   4.3*sigma
   A  45  PHE  CA
   A  45  PHE  CB
   A  45  PHE  CG        113.80   109.55     4.25  1.00e+00  1.81e+01   4.3*sigma
   A 116  ASP  CA
   A 116  ASP  C
   A 117  PRO  N         116.90   123.23    -6.33  1.50e+00  1.78e+01   4.2*sigma
   A 131  ILE  CA
   A 131  ILE  CB
   A 131  ILE  CG2       110.50   117.67    -7.17  1.70e+00  1.78e+01   4.2*sigma
   A 138  HIS  CA
   A 138  HIS  CB
   A 138  HIS  CG        113.80   117.97    -4.17  1.00e+00  1.74e+01   4.2*sigma
   A  14  VAL  C
   A  15  PHE  N
   A  15  PHE  CA        121.70   129.15    -7.45  1.80e+00  1.72e+01   4.1*sigma
   A  30  ILE  CA
   A  30  ILE  CB
   A  30  ILE  CG1       110.40   117.42    -7.02  1.70e+00  1.70e+01   4.1*sigma
   A 138  HIS  ND1
   A 138  HIS  CG
   A 138  HIS  CD2       106.10   110.23    -4.13  1.00e+00  1.70e+01   4.1*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   110.19    -4.09  1.00e+00  1.67e+01   4.1*sigma
   A 133  GLU  N
   A 133  GLU  CA
   A 133  GLU  CB        110.50   117.37    -6.87  1.70e+00  1.64e+01   4.0*sigma
   A  61  LEU  CD1
   A  61  LEU  CG
   A  61  LEU  CD2       110.80   101.97     8.83  2.20e+00  1.61e+01   4.0*sigma

  Min. delta:    0.007 (Z=  0.002)
  Max. delta:   12.108 (Z=  6.359)
  Mean delta:    2.423 (Z=  1.330)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 135  HIS  CA
   A 135  HIS  C
   A 136  HIS  N
   A 136  HIS  CA        180.00    47.12   132.88  5.00e+00  7.06e+02  26.6*sigma
   A 130  SER  CA
   A 130  SER  C
   A 131  ILE  N
   A 131  ILE  CA        180.00    69.66   110.34  5.00e+00  4.87e+02  22.1*sigma
   A 138  HIS  CA
   A 138  HIS  C
   A 139  HIS  N
   A 139  HIS  CA        180.00   123.81    56.19  5.00e+00  1.26e+02  11.2*sigma
   A 128  MET  CA
   A 128  MET  C
   A 129  ARG  N
   A 129  ARG  CA        180.00   126.36    53.64  5.00e+00  1.15e+02  10.7*sigma
   A  95  ASP  CA
   A  95  ASP  C
   A  96  GLY  N
   A  96  GLY  CA        180.00   133.10    46.90  5.00e+00  8.80e+01   9.4*sigma
   A 114  PRO  CA
   A 114  PRO  C
   A 115  ALA  N
   A 115  ALA  CA        180.00   138.53    41.47  5.00e+00  6.88e+01   8.3*sigma
   A 131  ILE  CA
   A 131  ILE  C
   A 132  LEU  N
   A 132  LEU  CA        180.00   141.41    38.59  5.00e+00  5.96e+01   7.7*sigma
   A 127  ARG  CA
   A 127  ARG  C
   A 128  MET  N
   A 128  MET  CA        180.00   146.56    33.44  5.00e+00  4.47e+01   6.7*sigma
   A 132  LEU  CA
   A 132  LEU  C
   A 133  GLU  N
   A 133  GLU  CA        180.00   151.34    28.66  5.00e+00  3.29e+01   5.7*sigma
   A 119  LEU  CA
   A 119  LEU  C
   A 120  GLU  N
   A 120  GLU  CA        180.00   151.66    28.34  5.00e+00  3.21e+01   5.7*sigma
   A  81  TYR  CA
   A  81  TYR  C
   A  82  THR  N
   A  82  THR  CA        180.00   153.35    26.65  5.00e+00  2.84e+01   5.3*sigma
   A 129  ARG  CA
   A 129  ARG  C
   A 130  SER  N
   A 130  SER  CA        180.00   155.65    24.35  5.00e+00  2.37e+01   4.9*sigma
   A  94  GLY  CA
   A  94  GLY  C
   A  95  ASP  N
   A  95  ASP  CA        180.00   156.44    23.56  5.00e+00  2.22e+01   4.7*sigma
   A  21  ARG  CA
   A  21  ARG  C
   A  22  PRO  N
   A  22  PRO  CA        180.00   157.33    22.67  5.00e+00  2.06e+01   4.5*sigma
   A  88  ASP  CA
   A  88  ASP  C
   A  89  TYR  N
   A  89  TYR  CA        180.00   158.41    21.59  5.00e+00  1.86e+01   4.3*sigma
   A  84  GLU  CA
   A  84  GLU  C
   A  85  LYS  N
   A  85  LYS  CA        180.00   159.84    20.16  5.00e+00  1.63e+01   4.0*sigma
   A 133  GLU  CA
   A 133  GLU  C
   A 134  HIS  N
   A 134  HIS  CA        180.00   159.99    20.01  5.00e+00  1.60e+01   4.0*sigma

  Min. delta:    0.012
  Max. delta:  132.878
  Mean delta:   14.338

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.630
  Mean delta:    0.126

                       ----------Planar groups----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.094
  Mean delta:    0.015

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.011   0.048   2241  Z= 0.604
    Angle     :  2.167  12.108   4077  Z= 0.971
    Chirality :  0.126   0.630    176
    Planarity :  0.011   0.070    326
    Dihedral  : 11.448 132.878    768
    Min Nonbonded Distance : 1.589
  
  Molprobity Statistics.
    All-atom Clashscore : 5.41
    Ramachandran Plot:
      Outliers : 12.41 %
      Allowed  : 10.95 %
      Favored  : 76.64 %
    Rotamer:
      Outliers :  0.00 %
      Allowed  :  0.81 %
      Favored  : 99.19 %
    Cbeta Deviations :  1.52 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.00 %
      Twisted Proline : 0.00 %
      Twisted General : 6.11 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -1.32 (0.75), residues: 137
    helix:  1.91 (0.65), residues: 56
    sheet:  None (None), residues: 0
    loop : -3.20 (0.70), residues: 81
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.007   0.002   HIS A 138 
   PHE   0.105   0.027   PHE A  67 
   TYR   0.120   0.020   TYR A  12 
   ARG   0.072   0.011   ARG A  58 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.007   0.002   HIS A 138 
   PHE   0.061   0.027   PHE A  67 
   TYR   0.072   0.016   TYR A  12 
   ARG   0.012   0.003   ARG A  58 

                     ----------Asn/Gln/His flips----------                     

   A 139  HIS

=================================== Summary ===================================

  Ramachandran outliers =   3.65 %
                favored =  83.94 %
  Rotamer outliers      =   0.81 %
  C-beta deviations     =     1
  Clashscore            =   6.77
  RMS(bonds)            =   0.0118
  RMS(angles)           =   2.05
  MolProbity score      =   2.05

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py

End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000 (Z=  0.001)
  Max. delta:    0.049 (Z=  3.508)
  Mean delta:    0.016 (Z=  0.860)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  53  LEU  CD1
   A  53  LEU  CG
   A  53  LEU  CD2       110.80   127.67   -16.87  2.20e+00  5.88e+01   7.7*sigma
   A 124  ALA  C
   A 124  ALA  CA
   A 124  ALA  CB        110.50   101.49     9.01  1.50e+00  3.61e+01   6.0*sigma
   A  86  ILE  C
   A  86  ILE  CA
   A  86  ILE  CB        111.60   123.58   -11.98  2.00e+00  3.59e+01   6.0*sigma
   A  82  THR  N
   A  82  THR  CA
   A  82  THR  CB        111.50   120.90    -9.40  1.70e+00  3.06e+01   5.5*sigma
   A  58  ARG  NE
   A  58  ARG  CZ
   A  58  ARG  NH2       119.20   123.76    -4.56  9.00e-01  2.56e+01   5.1*sigma
   A 126  VAL  CA
   A 126  VAL  CB
   A 126  VAL  CG1       110.40   118.67    -8.27  1.70e+00  2.37e+01   4.9*sigma
   A  30  ILE  CA
   A  30  ILE  CB
   A  30  ILE  CG1       110.40   118.50    -8.10  1.70e+00  2.27e+01   4.8*sigma
   A  53  LEU  CA
   A  53  LEU  C
   A  54  PRO  N         116.90   124.05    -7.15  1.50e+00  2.27e+01   4.8*sigma
   A   2  LEU  CB
   A   2  LEU  CG
   A   2  LEU  CD1       110.70   124.53   -13.83  3.00e+00  2.12e+01   4.6*sigma
   A  78  ILE  CA
   A  78  ILE  CB
   A  78  ILE  CG1       110.40   118.13    -7.73  1.70e+00  2.07e+01   4.5*sigma
   A  43  HIS  ND1
   A  43  HIS  CG
   A  43  HIS  CD2       106.10   110.59    -4.49  1.00e+00  2.01e+01   4.5*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.58    -4.48  1.00e+00  2.01e+01   4.5*sigma
   A 113  LYS  CA
   A 113  LYS  C
   A 114  PRO  N         116.90   123.58    -6.68  1.50e+00  1.98e+01   4.5*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.53    -4.43  1.00e+00  1.96e+01   4.4*sigma
   A 134  HIS  ND1
   A 134  HIS  CG
   A 134  HIS  CD2       106.10   110.49    -4.39  1.00e+00  1.92e+01   4.4*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   110.42    -4.32  1.00e+00  1.86e+01   4.3*sigma
   A  17  SER  C
   A  17  SER  CA
   A  17  SER  CB        110.10   101.91     8.19  1.90e+00  1.86e+01   4.3*sigma
   A  21  ARG  CA
   A  21  ARG  C
   A  22  PRO  N         116.90   123.31    -6.41  1.50e+00  1.83e+01   4.3*sigma
   A 138  HIS  ND1
   A 138  HIS  CG
   A 138  HIS  CD2       106.10   110.33    -4.23  1.00e+00  1.79e+01   4.2*sigma
   A 136  HIS  ND1
   A 136  HIS  CG
   A 136  HIS  CD2       106.10   110.16    -4.06  1.00e+00  1.65e+01   4.1*sigma
   A 101  LYS  CA
   A 101  LYS  C
   A 102  PRO  N         116.90   122.94    -6.04  1.50e+00  1.62e+01   4.0*sigma
   A 139  HIS  ND1
   A 139  HIS  CE1
   A 139  HIS  NE2       108.40   112.42    -4.02  1.00e+00  1.62e+01   4.0*sigma

  Min. delta:    0.005 (Z=  0.001)
  Max. delta:   16.870 (Z=  7.668)
  Mean delta:    2.317 (Z=  1.279)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  86  ILE  CA
   A  86  ILE  C
   A  87  GLY  N
   A  87  GLY  CA        180.00   151.01    28.99  5.00e+00  3.36e+01   5.8*sigma
   A  45  PHE  CA
   A  45  PHE  C
   A  46  SER  N
   A  46  SER  CA        180.00   155.95    24.05  5.00e+00  2.31e+01   4.8*sigma
   A  43  HIS  CA
   A  43  HIS  C
   A  44  ASP  N
   A  44  ASP  CA        180.00   158.79    21.21  5.00e+00  1.80e+01   4.2*sigma

  Min. delta:    0.008
  Max. delta:   67.914
  Mean delta:   11.913

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.001
  Max. delta:    0.581
  Mean delta:    0.117

                       ----------Planar groups----------                       

  atoms                 rms_deltas   delta_max    residual   deviation
   A  91  TYR  CB
   A  91  TYR  CG
   A  91  TYR  CD1
   A  91  TYR  CD2
   A  91  TYR  CE1
   A  91  TYR  CE2
   A  91  TYR  CZ
   A  91  TYR  OH            0.081       0.139      132.53   6.9*sigma
   A  43  HIS  CB
   A  43  HIS  CG
   A  43  HIS  ND1
   A  43  HIS  CD2
   A  43  HIS  CE1
   A  43  HIS  NE2           0.058       0.089       51.04   4.4*sigma

  Min. delta:    0.000
  Max. delta:    0.081
  Mean delta:    0.014

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

                       ----------Angle outliers----------                      

   A  53  LEU  HG , Angle CD1-CG-HG, observed: 95.869, delta from target: 12.131
   A  45  PHE  HA , Angle N-CA-HA, observed: 95.144, delta from target: 14.856
   A  53  LEU  HG , Angle CB-CG-HG, observed: 124.990, delta from target: -15.990

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.011   0.049   2241  Z= 0.612
    Angle     :  2.095  16.870   4077  Z= 0.938
    Chirality :  0.117   0.581    176
    Planarity :  0.012   0.101    326
    Dihedral  : 10.780  67.914    768
    Min Nonbonded Distance : 1.734
  
  Molprobity Statistics.
    All-atom Clashscore : 7.22
    Ramachandran Plot:
      Outliers :  3.65 %
      Allowed  : 11.68 %
      Favored  : 84.67 %
    Rotamer:
      Outliers :  2.42 %
      Allowed  :  1.61 %
      Favored  : 95.97 %
    Cbeta Deviations :  2.27 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.00 %
      Twisted Proline : 0.00 %
      Twisted General : 0.00 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -0.48 (0.71), residues: 137
    helix:  1.81 (0.62), residues: 64
    sheet:  None (None), residues: 0
    loop : -2.48 (0.68), residues: 73
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.005   0.001   HIS A 139 
   PHE   0.185   0.048   PHE A  15 
   TYR   0.206   0.028   TYR A  91 
   ARG   0.021   0.007   ARG A  58 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.005   0.001   HIS A 139 
   PHE   0.060   0.030   PHE A  15 
   TYR   0.139   0.028   TYR A  91 
   ARG   0.011   0.004   ARG A  21 

                     ----------Asn/Gln/His flips----------                     

  No backwards Asn/Gln/His sidechains found.

=================================== Summary ===================================

  Ramachandran outliers =   9.49 %
                favored =  81.02 %
  Rotamer outliers      =   0.81 %
  C-beta deviations     =     8
  Clashscore            =   5.86
  RMS(bonds)            =   0.0117
  RMS(angles)           =   2.29
  MolProbity score      =   2.04

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py
  Ramachandran outliers =   3.65 %
                favored =  86.13 %
  Rotamer outliers      =   0.00 %
  C-beta deviations     =     3
  Clashscore            =   1.35
  RMS(bonds)            =   0.0115
  RMS(angles)           =   2.00
  MolProbity score      =   1.50

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py
  Ramachandran outliers =   3.65 %
                favored =  86.13 %
  Rotamer outliers      =   0.81 %
  C-beta deviations     =     6
  Clashscore            =   1.35
  RMS(bonds)            =   0.0114
  RMS(angles)           =   2.09
  MolProbity score      =   1.50

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py
  Ramachandran outliers =   2.92 %
                favored =  83.21 %
  Rotamer outliers      =   0.81 %
  C-beta deviations     =     1
  Clashscore            =   4.51
  RMS(bonds)            =   0.0114
  RMS(angles)           =   2.10
  MolProbity score      =   1.92

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py
  Ramachandran outliers =  12.41 %
                favored =  76.64 %
  Rotamer outliers      =   0.00 %
  C-beta deviations     =     2
  Clashscore            =   5.41
  RMS(bonds)            =   0.0113
  RMS(angles)           =   2.17
  MolProbity score      =   2.07

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py
  Ramachandran outliers =   3.65 %
                favored =  84.67 %
  Rotamer outliers      =   2.42 %
  C-beta deviations     =     3
  Clashscore            =   7.22
  RMS(bonds)            =   0.0114
  RMS(angles)           =   2.09
  MolProbity score      =   2.35

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py
  Ramachandran outliers =   3.65 %
                favored =  81.75 %
  Rotamer outliers      =   0.81 %
  C-beta deviations     =     2
  Clashscore            =   7.67
  RMS(bonds)            =   0.0120
  RMS(angles)           =   2.04
  MolProbity score      =   2.13

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py

============================== Collecting inputs ==============================


============================== Collecting inputs ==============================


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============================== Collecting inputs ==============================

Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  


============================== Collecting inputs ==============================

Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  


============================== Collecting inputs ==============================

Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  


============================== Collecting inputs ==============================


============================== Collecting inputs ==============================

Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  


============================== Collecting inputs ==============================

Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  

Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  


============================== Collecting inputs ==============================


============================== Collecting inputs ==============================


============================== Collecting inputs ==============================


============================== Collecting inputs ==============================


============================== Collecting inputs ==============================


============================== Collecting inputs ==============================


============================== Collecting inputs ==============================


============================== Collecting inputs ==============================


============================== Collecting inputs ==============================


============================== Collecting inputs ==============================


============================== Collecting inputs ==============================


============================== Collecting inputs ==============================


============================== Collecting inputs ==============================


============================== Collecting inputs ==============================


============================== Collecting inputs ==============================


============================== Collecting inputs ==============================


============================== Collecting inputs ==============================


============================== Collecting inputs ==============================


============================== Collecting inputs ==============================

Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  

Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  

Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  


============================== Collecting inputs ==============================


  Symmetric amino acids flipped
    Residue "A GLU    8": "OE1" <-> "OE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A PHE   45": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU   49": "OE1" <-> "OE2"
    Residue "A TYR   50": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A TYR   68": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR   89": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR   91": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU  123": "OE1" <-> "OE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU  133": "OE1" <-> "OE2"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""
Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  

Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  


============================== Collecting inputs ==============================


  Symmetric amino acids flipped
    Residue "A GLU    8": "OE1" <-> "OE2"
    Residue "A TYR   12": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   24": "OE1" <-> "OE2"
    Residue "A ASP   44": "OD1" <-> "OD2"
    Residue "A GLU   55": "OE1" <-> "OE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A TYR   68": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU   84": "OE1" <-> "OE2"
    Residue "A TYR   91": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ASP   95": "OD1" <-> "OD2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ASP  116": "OD1" <-> "OD2"
    Residue "A ASP  118": "OD1" <-> "OD2"
    Residue "A GLU  123": "OE1" <-> "OE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""
Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  

Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  

Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  


  Symmetric amino acids flipped
    Residue "A TYR   12": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A PHE   15": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A TYR   50": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   84": "OE1" <-> "OE2"
    Residue "A TYR   89": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR   91": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU  133": "OE1" <-> "OE2"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""
Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  

Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  


  Symmetric amino acids flipped
    Residue "A GLU    8": "OE1" <-> "OE2"
    Residue "A PHE   15": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   24": "OE1" <-> "OE2"
    Residue "A TYR   50": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A TYR   68": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU   75": "OE1" <-> "OE2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU  120": "OE1" <-> "OE2"
    Residue "A GLU  123": "OE1" <-> "OE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""
Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  

Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  

Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  

Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  

        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'PTRANS': 7, 'TRANS': 131}
Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  

Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  

Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  

Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  

Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  

Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  

Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  

Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  

Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  

        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'PTRANS': 7, 'TRANS': 131}
Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  

Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  

  Time building chain proxies: 0.66, per 1000 atoms: 0.30
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (107.484, 46.977, 39.545, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.
Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  

Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  

Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  


  Symmetric amino acids flipped
    Residue "A GLU    8": "OE1" <-> "OE2"
    Residue "A PHE   15": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   24": "OE1" <-> "OE2"
    Residue "A TYR   50": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU   55": "OE1" <-> "OE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A TYR   81": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU   84": "OE1" <-> "OE2"
    Residue "A TYR   89": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR   91": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""
Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  

  Time building chain proxies: 0.69, per 1000 atoms: 0.31
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (66.921, 45.03, 50.164, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.
Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  


  Symmetric amino acids flipped
    Residue "A GLU    8": "OE1" <-> "OE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   24": "OE1" <-> "OE2"
    Residue "A GLU   32": "OE1" <-> "OE2"
    Residue "A GLU   49": "OE1" <-> "OE2"
    Residue "A GLU   55": "OE1" <-> "OE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A PHE   67": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR   68": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ASP   74": "OD1" <-> "OD2"
    Residue "A GLU   84": "OE1" <-> "OE2"
    Residue "A TYR  111": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ASP  118": "OD1" <-> "OD2"
    Residue "A GLU  120": "OE1" <-> "OE2"
    Residue "A GLU  123": "OE1" <-> "OE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU  133": "OE1" <-> "OE2"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'PTRANS': 7, 'TRANS': 131}

  Symmetric amino acids flipped
    Residue "A GLU    8": "OE1" <-> "OE2"
    Residue "A GLU   16": "OE1" <-> "OE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ASP   36": "OD1" <-> "OD2"
    Residue "A ASP   47": "OD1" <-> "OD2"
    Residue "A TYR   50": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A PHE   67": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR   89": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR   91": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU  120": "OE1" <-> "OE2"
    Residue "A GLU  123": "OE1" <-> "OE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU  133": "OE1" <-> "OE2"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'PCIS': 1, 'PTRANS': 6, 'TRANS': 131}
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'PTRANS': 7, 'TRANS': 131}

  Symmetric amino acids flipped
    Residue "A PHE   15": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   24": "OE1" <-> "OE2"
    Residue "A GLU   32": "OE1" <-> "OE2"
    Residue "A GLU   49": "OE1" <-> "OE2"
    Residue "A TYR   50": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU   55": "OE1" <-> "OE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A TYR   68": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR   89": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU  120": "OE1" <-> "OE2"
    Residue "A GLU  123": "OE1" <-> "OE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU  133": "OE1" <-> "OE2"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""

  Symmetric amino acids flipped
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ASP   44": "OD1" <-> "OD2"
    Residue "A GLU   49": "OE1" <-> "OE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ASP   88": "OD1" <-> "OD2"
    Residue "A TYR   89": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU  120": "OE1" <-> "OE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""
  Time building chain proxies: 0.73, per 1000 atoms: 0.33
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (79.318, 65.622, 71.474, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.

  Symmetric amino acids flipped
    Residue "A GLU    8": "OE1" <-> "OE2"
    Residue "A TYR   12": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU   16": "OE1" <-> "OE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   24": "OE1" <-> "OE2"
    Residue "A GLU   32": "OE1" <-> "OE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A TYR   68": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU   75": "OE1" <-> "OE2"
    Residue "A TYR   91": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU  133": "OE1" <-> "OE2"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""

  Symmetric amino acids flipped
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   24": "OE1" <-> "OE2"
    Residue "A GLU   32": "OE1" <-> "OE2"
    Residue "A ASP   36": "OD1" <-> "OD2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A PHE   67": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU   84": "OE1" <-> "OE2"
    Residue "A TYR   91": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU  120": "OE1" <-> "OE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU  133": "OE1" <-> "OE2"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""

  Symmetric amino acids flipped
    Residue "A GLU    8": "OE1" <-> "OE2"
    Residue "A GLU   16": "OE1" <-> "OE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   24": "OE1" <-> "OE2"
    Residue "A ASP   36": "OD1" <-> "OD2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A PHE   67": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ASP   74": "OD1" <-> "OD2"
    Residue "A GLU   75": "OE1" <-> "OE2"
    Residue "A TYR   81": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR   89": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ASP   95": "OD1" <-> "OD2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ASP  118": "OD1" <-> "OD2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU  133": "OE1" <-> "OE2"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""
  Time building chain proxies: 1.03, per 1000 atoms: 0.46
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (82.275, 45.767, 67.466, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.

  Symmetric amino acids flipped
    Residue "A GLU    8": "OE1" <-> "OE2"
    Residue "A GLU   16": "OE1" <-> "OE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   24": "OE1" <-> "OE2"
    Residue "A GLU   32": "OE1" <-> "OE2"
    Residue "A GLU   49": "OE1" <-> "OE2"
    Residue "A GLU   55": "OE1" <-> "OE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A TYR   68": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ASP   74": "OD1" <-> "OD2"
    Residue "A TYR   89": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR   91": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""
  Time building chain proxies: 0.62, per 1000 atoms: 0.28
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (69.557, 38.168, 55.252, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'CIS': 1, 'PTRANS': 7, 'TRANS': 130}

  Symmetric amino acids flipped
    Residue "A GLU    8": "OE1" <-> "OE2"
    Residue "A TYR   12": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU   16": "OE1" <-> "OE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ASP   36": "OD1" <-> "OD2"
    Residue "A ASP   47": "OD1" <-> "OD2"
    Residue "A GLU   55": "OE1" <-> "OE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   75": "OE1" <-> "OE2"
    Residue "A TYR   91": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU  120": "OE1" <-> "OE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU  133": "OE1" <-> "OE2"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""

  Symmetric amino acids flipped
    Residue "A GLU    8": "OE1" <-> "OE2"
    Residue "A GLU   16": "OE1" <-> "OE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   24": "OE1" <-> "OE2"
    Residue "A PHE   45": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR   50": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   84": "OE1" <-> "OE2"
    Residue "A TYR   89": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR   91": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""
  Time building chain proxies: 0.59, per 1000 atoms: 0.27
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (68.218, 64.609, 64.299, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.

  Symmetric amino acids flipped
    Residue "A GLU    8": "OE1" <-> "OE2"
    Residue "A TYR   12": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A PHE   15": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   24": "OE1" <-> "OE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A PHE   67": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU   75": "OE1" <-> "OE2"
    Residue "A GLU   84": "OE1" <-> "OE2"
    Residue "A TYR   91": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ASP  118": "OD1" <-> "OD2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""

  Symmetric amino acids flipped
    Residue "A GLU    8": "OE1" <-> "OE2"
    Residue "A GLU   16": "OE1" <-> "OE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   24": "OE1" <-> "OE2"
    Residue "A TYR   50": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A PHE   67": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR   89": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR   91": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ASP   95": "OD1" <-> "OD2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU  120": "OE1" <-> "OE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU  133": "OE1" <-> "OE2"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""

  Symmetric amino acids flipped
    Residue "A GLU    8": "OE1" <-> "OE2"
    Residue "A GLU   16": "OE1" <-> "OE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A TYR   50": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU   55": "OE1" <-> "OE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   75": "OE1" <-> "OE2"
    Residue "A GLU   84": "OE1" <-> "OE2"
    Residue "A TYR   91": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ASP  116": "OD1" <-> "OD2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""

  Symmetric amino acids flipped
    Residue "A GLU    8": "OE1" <-> "OE2"
    Residue "A GLU   16": "OE1" <-> "OE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   24": "OE1" <-> "OE2"
    Residue "A GLU   32": "OE1" <-> "OE2"
    Residue "A GLU   49": "OE1" <-> "OE2"
    Residue "A GLU   55": "OE1" <-> "OE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A TYR   68": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ASP   74": "OD1" <-> "OD2"
    Residue "A TYR   89": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR   91": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""

  Symmetric amino acids flipped
    Residue "A GLU    8": "OE1" <-> "OE2"
    Residue "A GLU   16": "OE1" <-> "OE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ASP   44": "OD1" <-> "OD2"
    Residue "A PHE   45": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR   50": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A PHE   67": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR   68": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU   84": "OE1" <-> "OE2"
    Residue "A TYR   91": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ASP  116": "OD1" <-> "OD2"
    Residue "A GLU  120": "OE1" <-> "OE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'CIS': 3, 'PTRANS': 7, 'TRANS': 128}

  Symmetric amino acids flipped
    Residue "A TYR   12": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A PHE   15": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   24": "OE1" <-> "OE2"
    Residue "A GLU   32": "OE1" <-> "OE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A TYR   68": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ASP   95": "OD1" <-> "OD2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU  123": "OE1" <-> "OE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU  133": "OE1" <-> "OE2"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""

  Symmetric amino acids flipped
    Residue "A GLU    8": "OE1" <-> "OE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   24": "OE1" <-> "OE2"
    Residue "A GLU   32": "OE1" <-> "OE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A PHE   67": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR   81": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR  111": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU  120": "OE1" <-> "OE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU  133": "OE1" <-> "OE2"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""

  Symmetric amino acids flipped
    Residue "A GLU    8": "OE1" <-> "OE2"
    Residue "A PHE   15": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   24": "OE1" <-> "OE2"
    Residue "A GLU   49": "OE1" <-> "OE2"
    Residue "A GLU   55": "OE1" <-> "OE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A TYR   68": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR  111": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU  120": "OE1" <-> "OE2"
    Residue "A GLU  123": "OE1" <-> "OE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""

  Symmetric amino acids flipped
    Residue "A GLU    8": "OE1" <-> "OE2"
    Residue "A TYR   12": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A PHE   15": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU   16": "OE1" <-> "OE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   24": "OE1" <-> "OE2"
    Residue "A GLU   32": "OE1" <-> "OE2"
    Residue "A PHE   45": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A TYR   68": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU   75": "OE1" <-> "OE2"
    Residue "A TYR   89": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR   91": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU  123": "OE1" <-> "OE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU  133": "OE1" <-> "OE2"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""

  Symmetric amino acids flipped
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   24": "OE1" <-> "OE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A PHE   67": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR   68": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU   75": "OE1" <-> "OE2"
    Residue "A GLU   84": "OE1" <-> "OE2"
    Residue "A TYR   89": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR   91": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU  120": "OE1" <-> "OE2"
    Residue "A GLU  123": "OE1" <-> "OE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU  133": "OE1" <-> "OE2"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""

  Symmetric amino acids flipped
    Residue "A GLU    8": "OE1" <-> "OE2"
    Residue "A TYR   12": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU   16": "OE1" <-> "OE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   24": "OE1" <-> "OE2"
    Residue "A GLU   32": "OE1" <-> "OE2"
    Residue "A ASP   44": "OD1" <-> "OD2"
    Residue "A GLU   55": "OE1" <-> "OE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A TYR   91": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR  111": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU  120": "OE1" <-> "OE2"
    Residue "A GLU  123": "OE1" <-> "OE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU  133": "OE1" <-> "OE2"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""

  Symmetric amino acids flipped
    Residue "A TYR   12": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU   16": "OE1" <-> "OE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   32": "OE1" <-> "OE2"
    Residue "A PHE   45": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A TYR   68": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR   89": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR   91": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ASP  118": "OD1" <-> "OD2"
    Residue "A GLU  123": "OE1" <-> "OE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""

  Symmetric amino acids flipped
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ASP   36": "OD1" <-> "OD2"
    Residue "A TYR   50": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A PHE   67": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU   84": "OE1" <-> "OE2"
    Residue "A TYR   89": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ASP  118": "OD1" <-> "OD2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU  133": "OE1" <-> "OE2"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""

  Symmetric amino acids flipped
    Residue "A GLU    8": "OE1" <-> "OE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   24": "OE1" <-> "OE2"
    Residue "A GLU   32": "OE1" <-> "OE2"
    Residue "A GLU   49": "OE1" <-> "OE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A PHE   67": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR   68": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU  123": "OE1" <-> "OE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU  133": "OE1" <-> "OE2"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""

  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 0.61
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 0.69 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.


  Symmetric amino acids flipped
    Residue "A GLU    8": "OE1" <-> "OE2"
    Residue "A TYR   12": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU   16": "OE1" <-> "OE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ASP   36": "OD1" <-> "OD2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A PHE   67": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU   75": "OE1" <-> "OE2"
    Residue "A GLU   84": "OE1" <-> "OE2"
    Residue "A TYR   89": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR   91": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ASP  103": "OD1" <-> "OD2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU  120": "OE1" <-> "OE2"
    Residue "A GLU  123": "OE1" <-> "OE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""

  Symmetric amino acids flipped
    Residue "A TYR   12": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A PHE   15": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ASP   36": "OD1" <-> "OD2"
    Residue "A TYR   50": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU   55": "OE1" <-> "OE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A PHE   67": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU   75": "OE1" <-> "OE2"
    Residue "A TYR   81": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU   84": "OE1" <-> "OE2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU  120": "OE1" <-> "OE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""

  Symmetric amino acids flipped
    Residue "A GLU    8": "OE1" <-> "OE2"
    Residue "A TYR   12": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   24": "OE1" <-> "OE2"
    Residue "A TYR   50": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A PHE   67": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR   91": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""
  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 135
        1.23 -     1.43: 332
        1.43 -     1.63: 664
        1.63 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" C   PRO A  52 "
       model="   1" pdb=" N   LEU A  53 "
    ideal  model  delta    sigma   weight residual
    1.329  1.381 -0.052 1.40e-02 5.10e+03 1.38e+01
  bond model="   1" pdb=" CE1 HIS A 138 "
       model="   1" pdb=" NE2 HIS A 138 "
    ideal  model  delta    sigma   weight residual
    1.321  1.356 -0.035 1.00e-02 1.00e+04 1.24e+01
  bond model="   1" pdb=" CE1 HIS A 134 "
       model="   1" pdb=" NE2 HIS A 134 "
    ideal  model  delta    sigma   weight residual
    1.321  1.356 -0.035 1.00e-02 1.00e+04 1.21e+01
  bond model="   1" pdb=" CE1 HIS A 137 "
       model="   1" pdb=" NE2 HIS A 137 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.19e+01
  bond model="   1" pdb=" CE1 HIS A 139 "
       model="   1" pdb=" NE2 HIS A 139 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.15e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       96.54 -   103.53: 29
      103.53 -   110.53: 2208
      110.53 -   117.53: 858
      117.53 -   124.53: 904
      124.53 -   131.53: 78
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" N   GLU A  55 "
        model="   1" pdb=" CA  GLU A  55 "
        model="   1" pdb=" CB  GLU A  55 "
      ideal   model   delta    sigma   weight residual
     110.50  120.11   -9.61 1.70e+00 3.46e-01 3.20e+01
  angle model="   1" pdb=" N   ALA A 124 "
        model="   1" pdb=" CA  ALA A 124 "
        model="   1" pdb=" CB  ALA A 124 "
      ideal   model   delta    sigma   weight residual
     110.40  117.94   -7.54 1.50e+00 4.44e-01 2.53e+01
  angle model="   1" pdb=" CA  THR A  92 "
        model="   1" pdb=" CB  THR A  92 "
        model="   1" pdb=" CG2 THR A  92 "
      ideal   model   delta    sigma   weight residual
     110.50  118.54   -8.04 1.70e+00 3.46e-01 2.24e+01
  angle model="   1" pdb=" ND1 HIS A 138 "
        model="   1" pdb=" CG  HIS A 138 "
        model="   1" pdb=" CD2 HIS A 138 "
      ideal   model   delta    sigma   weight residual
     106.10  110.64   -4.54 1.00e+00 1.00e+00 2.06e+01
  angle model="   1" pdb=" ND1 HIS A 135 "
        model="   1" pdb=" CG  HIS A 135 "
        model="   1" pdb=" CD2 HIS A 135 "
      ideal   model   delta    sigma   weight residual
     106.10  110.56   -4.46 1.00e+00 1.00e+00 1.99e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    14.62: 963
       14.62 -    29.25: 46
       29.25 -    43.87: 10
       43.87 -    58.49: 8
       58.49 -    73.12: 5
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" CA  ILE A 122 "
           model="   1" pdb=" C   ILE A 122 "
           model="   1" pdb=" N   GLU A 123 "
           model="   1" pdb=" CA  GLU A 123 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  152.53   27.47     0      5.00e+00 4.00e-02 3.02e+01
  dihedral model="   1" pdb=" CA  GLY A 121 "
           model="   1" pdb=" C   GLY A 121 "
           model="   1" pdb=" N   ILE A 122 "
           model="   1" pdb=" CA  ILE A 122 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  152.81   27.19     0      5.00e+00 4.00e-02 2.96e+01
  dihedral model="   1" pdb=" N   LYS A 125 "
           model="   1" pdb=" C   LYS A 125 "
           model="   1" pdb=" CA  LYS A 125 "
           model="   1" pdb=" CB  LYS A 125 "
      ideal   model   delta  harmonic     sigma   weight residual
     122.80  133.94  -11.14     0      2.50e+00 1.60e-01 1.99e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.001 -    0.087: 119
       0.087 -    0.174: 45
       0.174 -    0.260: 5
       0.260 -    0.347: 3
       0.347 -    0.433: 4
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  THR A  83 "
            model="   1" pdb=" N   THR A  83 "
            model="   1" pdb=" C   THR A  83 "
            model="   1" pdb=" CB  THR A  83 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.53    2.09    0.43 2.00e-01 2.50e+01 4.69e+00
  chirality model="   1" pdb=" CA  LYS A 125 "
            model="   1" pdb=" N   LYS A 125 "
            model="   1" pdb=" C   LYS A 125 "
            model="   1" pdb=" CB  LYS A 125 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.08    0.43 2.00e-01 2.50e+01 4.61e+00
  chirality model="   1" pdb=" CA  THR A  92 "
            model="   1" pdb=" N   THR A  92 "
            model="   1" pdb=" C   THR A  92 "
            model="   1" pdb=" CB  THR A  92 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.53    2.17    0.36 2.00e-01 2.50e+01 3.20e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  68 "    0.010 2.00e-02 2.50e+03   5.51e-02 9.11e+01
        model="   1" pdb=" CG  TYR A  68 "    0.028 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  68 "    0.024 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  68 "   -0.012 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  68 "   -0.046 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  68 "   -0.009 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  68 "   -0.005 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  68 "    0.109 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  68 "    0.069 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  68 "   -0.040 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  68 "   -0.120 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  68 "   -0.009 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  PHE A  45 "   -0.094 2.00e-02 2.50e+03   3.61e-02 3.90e+01
        model="   1" pdb=" CG  PHE A  45 "    0.029 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 PHE A  45 "    0.027 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 PHE A  45 "    0.023 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 PHE A  45 "   -0.004 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 PHE A  45 "    0.000 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  PHE A  45 "   -0.011 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 PHE A  45 "    0.048 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 PHE A  45 "    0.035 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 PHE A  45 "   -0.022 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 PHE A  45 "   -0.008 2.00e-02 2.50e+03
        model="   1" pdb=" HZ  PHE A  45 "   -0.023 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A 105 "    0.071 2.00e-02 2.50e+03   3.57e-02 3.82e+01
        model="   1" pdb=" CG  TYR A 105 "   -0.025 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A 105 "   -0.025 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A 105 "   -0.018 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A 105 "    0.019 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A 105 "    0.011 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A 105 "    0.036 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A 105 "   -0.033 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A 105 "   -0.056 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A 105 "   -0.033 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A 105 "    0.038 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A 105 "    0.014 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.76 -     2.33: 462
        2.33 -     2.90: 5049
        2.90 -     3.46: 5157
        3.46 -     4.03: 6605
        4.03 -     4.60: 9756
  Nonbonded interactions: 27029
  Sorted by model distance:
  nonbonded model="   1" pdb="HE21 GLN A  28 "
            model="   1" pdb=" OE2 GLU A  32 "
     model   vdw
     1.761 1.850
  nonbonded model="   1" pdb="HD22 LEU A  99 "
            model="   1" pdb=" HB3 GLU A 120 "
     model   vdw
     1.850 2.440
  nonbonded model="   1" pdb=" HZ1 LYS A  40 "
            model="   1" pdb=" OD1 ASP A 118 "
     model   vdw
     1.856 1.850
  nonbonded model="   1" pdb=" O   LEU A  53 "
            model="   1" pdb=" HE  ARG A  58 "
     model   vdw
     1.873 1.850
  nonbonded model="   1" pdb=" HB2 GLU A  55 "
            model="   1" pdb=" H   THR A  56 "
     model   vdw
     1.897 2.270
  ... (remaining 27024 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Symmetric amino acids flipped
    Residue "A GLU    8": "OE1" <-> "OE2"
    Residue "A TYR   12": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A PHE   15": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   24": "OE1" <-> "OE2"
    Residue "A GLU   32": "OE1" <-> "OE2"
    Residue "A ASP   36": "OD1" <-> "OD2"
    Residue "A ASP   47": "OD1" <-> "OD2"
    Residue "A GLU   55": "OE1" <-> "OE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ASP   74": "OD1" <-> "OD2"
    Residue "A TYR   89": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU  123": "OE1" <-> "OE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""

  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 0.60
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 0.68 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.


  Symmetric amino acids flipped
    Residue "A GLU    8": "OE1" <-> "OE2"
    Residue "A GLU   16": "OE1" <-> "OE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   55": "OE1" <-> "OE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A TYR   68": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR   81": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU  133": "OE1" <-> "OE2"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""

  Symmetric amino acids flipped
    Residue "A GLU    8": "OE1" <-> "OE2"
    Residue "A TYR   12": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   24": "OE1" <-> "OE2"
    Residue "A GLU   32": "OE1" <-> "OE2"
    Residue "A GLU   55": "OE1" <-> "OE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A TYR   89": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR   91": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU  120": "OE1" <-> "OE2"
    Residue "A GLU  123": "OE1" <-> "OE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'PTRANS': 7, 'TRANS': 131}
  Time building chain proxies: 1.12, per 1000 atoms: 0.51
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (75.363, 47.806, 69.592, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'PTRANS': 7, 'TRANS': 131}
  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 123
        1.23 -     1.43: 351
        1.43 -     1.62: 657
        1.62 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" C   SER A  97 "
       model="   1" pdb=" N   SER A  98 "
    ideal  model  delta    sigma   weight residual
    1.329  1.392 -0.063 1.40e-02 5.10e+03 2.05e+01
  bond model="   1" pdb=" C   LEU A  99 "
       model="   1" pdb=" N   GLN A 100 "
    ideal  model  delta    sigma   weight residual
    1.329  1.392 -0.063 1.40e-02 5.10e+03 2.05e+01
  bond model="   1" pdb=" CD  ARG A  21 "
       model="   1" pdb=" NE  ARG A  21 "
    ideal  model  delta    sigma   weight residual
    1.458  1.514 -0.056 1.40e-02 5.10e+03 1.62e+01
  bond model="   1" pdb=" CA  GLY A  80 "
       model="   1" pdb=" C   GLY A  80 "
    ideal  model  delta    sigma   weight residual
    1.516  1.447  0.069 1.80e-02 3.09e+03 1.47e+01
  bond model="   1" pdb=" C   SER A  98 "
       model="   1" pdb=" N   LEU A  99 "
    ideal  model  delta    sigma   weight residual
    1.329  1.381 -0.052 1.40e-02 5.10e+03 1.41e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       96.54 -   103.75: 43
      103.75 -   110.97: 2277
      110.97 -   118.18: 829
      118.18 -   125.40: 875
      125.40 -   132.62: 53
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" CA  ILE A  78 "
        model="   1" pdb=" CB  ILE A  78 "
        model="   1" pdb=" CG2 ILE A  78 "
      ideal   model   delta    sigma   weight residual
     110.50   96.54   13.96 1.70e+00 3.46e-01 6.75e+01
  angle model="   1" pdb=" C   SER A  97 "
        model="   1" pdb=" N   SER A  98 "
        model="   1" pdb=" CA  SER A  98 "
      ideal   model   delta    sigma   weight residual
     121.70  132.41  -10.71 1.80e+00 3.09e-01 3.54e+01
  angle model="   1" pdb=" CA  LYS A 113 "
        model="   1" pdb=" C   LYS A 113 "
        model="   1" pdb=" N   PRO A 114 "
      ideal   model   delta    sigma   weight residual
     116.90  125.73   -8.83 1.50e+00 4.44e-01 3.46e+01
  angle model="   1" pdb=" CA  ILE A  78 "
        model="   1" pdb=" CB  ILE A  78 "
        model="   1" pdb=" CG1 ILE A  78 "
      ideal   model   delta    sigma   weight residual
     110.40  120.29   -9.89 1.70e+00 3.46e-01 3.38e+01
  angle model="   1" pdb=" C   SER A  98 "
        model="   1" pdb=" CA  SER A  98 "
        model="   1" pdb=" CB  SER A  98 "
      ideal   model   delta    sigma   weight residual
     110.10   99.12   10.98 1.90e+00 2.77e-01 3.34e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    15.34: 971
       15.34 -    30.67: 47
       30.67 -    46.01: 10
       46.01 -    61.34: 3
       61.34 -    76.68: 1
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" CA  ILE A 122 "
           model="   1" pdb=" C   ILE A 122 "
           model="   1" pdb=" N   GLU A 123 "
           model="   1" pdb=" CA  GLU A 123 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  144.86   35.14     0      5.00e+00 4.00e-02 4.94e+01
  dihedral model="   1" pdb=" CA  GLY A 121 "
           model="   1" pdb=" C   GLY A 121 "
           model="   1" pdb=" N   ILE A 122 "
           model="   1" pdb=" CA  ILE A 122 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  148.77   31.23     0      5.00e+00 4.00e-02 3.90e+01
  dihedral model="   1" pdb=" C   ILE A  51 "
           model="   1" pdb=" N   ILE A  51 "
           model="   1" pdb=" CA  ILE A  51 "
           model="   1" pdb=" CB  ILE A  51 "
      ideal   model   delta  harmonic     sigma   weight residual
    -122.00 -135.12   13.12     0      2.50e+00 1.60e-01 2.75e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.002 -    0.113: 131
       0.113 -    0.225: 33
       0.225 -    0.336: 6
       0.336 -    0.447: 4
       0.447 -    0.558: 2
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CB  ILE A  51 "
            model="   1" pdb=" CA  ILE A  51 "
            model="   1" pdb=" CG1 ILE A  51 "
            model="   1" pdb=" CG2 ILE A  51 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.64    2.09    0.56 2.00e-01 2.50e+01 7.78e+00
  chirality model="   1" pdb=" CG  LEU A   2 "
            model="   1" pdb=" CB  LEU A   2 "
            model="   1" pdb=" CD1 LEU A   2 "
            model="   1" pdb=" CD2 LEU A   2 "
    both_signs  ideal   model   delta    sigma   weight residual
      False     -2.59   -2.11   -0.48 2.00e-01 2.50e+01 5.68e+00
  chirality model="   1" pdb=" CA  ILE A  51 "
            model="   1" pdb=" N   ILE A  51 "
            model="   1" pdb=" C   ILE A  51 "
            model="   1" pdb=" CB  ILE A  51 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.43    1.99    0.45 2.00e-01 2.50e+01 4.95e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  12 "    0.069 2.00e-02 2.50e+03   3.38e-02 3.43e+01
        model="   1" pdb=" CG  TYR A  12 "    0.023 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  12 "   -0.008 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  12 "   -0.018 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  12 "   -0.013 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  12 "   -0.003 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  12 "    0.008 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  12 "    0.056 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  12 "   -0.026 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  12 "   -0.055 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  12 "   -0.031 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  12 "   -0.001 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A 105 "    0.073 2.00e-02 2.50e+03   3.14e-02 2.96e+01
        model="   1" pdb=" CG  TYR A 105 "   -0.035 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A 105 "   -0.012 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A 105 "   -0.023 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A 105 "   -0.015 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A 105 "   -0.003 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A 105 "   -0.007 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A 105 "    0.054 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A 105 "    0.007 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A 105 "   -0.028 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A 105 "   -0.024 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A 105 "    0.013 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A 111 "    0.053 2.00e-02 2.50e+03   3.09e-02 2.86e+01
        model="   1" pdb=" CG  TYR A 111 "    0.009 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A 111 "   -0.011 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A 111 "   -0.006 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A 111 "   -0.011 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A 111 "   -0.017 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A 111 "    0.008 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A 111 "    0.071 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A 111 "   -0.025 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A 111 "   -0.008 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A 111 "   -0.024 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A 111 "   -0.040 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.76 -     2.33: 527
        2.33 -     2.90: 5085
        2.90 -     3.47: 5149
        3.47 -     4.03: 6619
        4.03 -     4.60: 9905
  Nonbonded interactions: 27285
  Sorted by model distance:
  nonbonded model="   1" pdb=" OE1 GLU A  55 "
            model="   1" pdb=" HE  ARG A  58 "
     model   vdw
     1.765 1.850
  nonbonded model="   1" pdb="HD11 ILE A  78 "
            model="   1" pdb="HD13 LEU A  93 "
     model   vdw
     1.783 2.440
  nonbonded model="   1" pdb=" HZ2 LYS A  79 "
            model="   1" pdb=" OD1 ASP A  95 "
     model   vdw
     1.829 1.850
  nonbonded model="   1" pdb=" OE2 GLU A  55 "
            model="   1" pdb="HH21 ARG A  58 "
     model   vdw
     1.831 1.850
  nonbonded model="   1" pdb=" HZ1 LYS A  10 "
            model="   1" pdb=" OD1 ASP A  23 "
     model   vdw
     1.850 1.850
  ... (remaining 27280 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Symmetric amino acids flipped
    Residue "A TYR   12": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A PHE   15": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   24": "OE1" <-> "OE2"
    Residue "A GLU   32": "OE1" <-> "OE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A PHE   67": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR   68": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR   81": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ASP  116": "OD1" <-> "OD2"
    Residue "A GLU  120": "OE1" <-> "OE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'CIS': 1, 'PTRANS': 7, 'TRANS': 130}
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'PTRANS': 7, 'TRANS': 131}
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'PTRANS': 7, 'TRANS': 131}
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'CIS': 3, 'PTRANS': 7, 'TRANS': 128}

  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 0.71
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 0.79 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 101
        1.23 -     1.43: 366
        1.43 -     1.63: 664
        1.63 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" CD  ARG A  58 "
       model="   1" pdb=" NE  ARG A  58 "
    ideal  model  delta    sigma   weight residual
    1.458  1.511 -0.053 1.40e-02 5.10e+03 1.41e+01
  bond model="   1" pdb=" CE1 HIS A  43 "
       model="   1" pdb=" NE2 HIS A  43 "
    ideal  model  delta    sigma   weight residual
    1.321  1.358 -0.037 1.00e-02 1.00e+04 1.34e+01
  bond model="   1" pdb=" CE1 HIS A 134 "
       model="   1" pdb=" NE2 HIS A 134 "
    ideal  model  delta    sigma   weight residual
    1.321  1.357 -0.036 1.00e-02 1.00e+04 1.30e+01
  bond model="   1" pdb=" C   ILE A  51 "
       model="   1" pdb=" O   ILE A  51 "
    ideal  model  delta    sigma   weight residual
    1.231  1.303 -0.072 2.00e-02 2.50e+03 1.29e+01
  bond model="   1" pdb=" CE1 HIS A 137 "
       model="   1" pdb=" NE2 HIS A 137 "
    ideal  model  delta    sigma   weight residual
    1.321  1.357 -0.036 1.00e-02 1.00e+04 1.27e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       96.05 -   103.37: 28
      103.37 -   110.70: 2223
      110.70 -   118.03: 868
      118.03 -   125.35: 906
      125.35 -   132.68: 52
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" CA  ILE A  51 "
        model="   1" pdb=" C   ILE A  51 "
        model="   1" pdb=" N   PRO A  52 "
      ideal   model   delta    sigma   weight residual
     116.90  126.94  -10.04 1.50e+00 4.44e-01 4.48e+01
  angle model="   1" pdb=" CA  LYS A 113 "
        model="   1" pdb=" C   LYS A 113 "
        model="   1" pdb=" N   PRO A 114 "
      ideal   model   delta    sigma   weight residual
     116.90  124.52   -7.62 1.50e+00 4.44e-01 2.58e+01
  angle model="   1" pdb=" N   HIS A 139 "
        model="   1" pdb=" CA  HIS A 139 "
        model="   1" pdb=" CB  HIS A 139 "
      ideal   model   delta    sigma   weight residual
     110.50  118.57   -8.07 1.70e+00 3.46e-01 2.25e+01
  angle model="   1" pdb=" N   HIS A 138 "
        model="   1" pdb=" CA  HIS A 138 "
        model="   1" pdb=" HA  HIS A 138 "
      ideal   model   delta    sigma   weight residual
     110.00   96.05   13.95 3.00e+00 1.11e-01 2.16e+01
  angle model="   1" pdb=" ND1 HIS A 135 "
        model="   1" pdb=" CG  HIS A 135 "
        model="   1" pdb=" CD2 HIS A 135 "
      ideal   model   delta    sigma   weight residual
     106.10  110.65   -4.55 1.00e+00 1.00e+00 2.07e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    14.07: 965
       14.07 -    28.14: 45
       28.14 -    42.22: 13
       42.22 -    56.29: 6
       56.29 -    70.36: 3
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" CA  HIS A 138 "
           model="   1" pdb=" C   HIS A 138 "
           model="   1" pdb=" N   HIS A 139 "
           model="   1" pdb=" CA  HIS A 139 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  140.65   39.35     0      5.00e+00 4.00e-02 6.19e+01
  dihedral model="   1" pdb=" CA  HIS A 137 "
           model="   1" pdb=" C   HIS A 137 "
           model="   1" pdb=" N   HIS A 138 "
           model="   1" pdb=" CA  HIS A 138 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  151.37   28.63     0      5.00e+00 4.00e-02 3.28e+01
  dihedral model="   1" pdb=" N   HIS A 138 "
           model="   1" pdb=" C   HIS A 138 "
           model="   1" pdb=" CA  HIS A 138 "
           model="   1" pdb=" CB  HIS A 138 "
      ideal   model   delta  harmonic     sigma   weight residual
     122.80  136.39  -13.59     0      2.50e+00 1.60e-01 2.96e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.000 -    0.105: 126
       0.105 -    0.210: 35
       0.210 -    0.315: 13
       0.315 -    0.420: 1
       0.420 -    0.525: 1
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  HIS A 138 "
            model="   1" pdb=" N   HIS A 138 "
            model="   1" pdb=" C   HIS A 138 "
            model="   1" pdb=" CB  HIS A 138 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    1.99    0.52 2.00e-01 2.50e+01 6.88e+00
  chirality model="   1" pdb=" CA  TYR A  50 "
            model="   1" pdb=" N   TYR A  50 "
            model="   1" pdb=" C   TYR A  50 "
            model="   1" pdb=" CB  TYR A  50 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.14    0.37 2.00e-01 2.50e+01 3.45e+00
  chirality model="   1" pdb=" CA  LYS A  79 "
            model="   1" pdb=" N   LYS A  79 "
            model="   1" pdb=" C   LYS A  79 "
            model="   1" pdb=" CB  LYS A  79 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.22    0.29 2.00e-01 2.50e+01 2.10e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  50 "    0.369 2.00e-02 2.50e+03   1.63e-01 7.97e+02
        model="   1" pdb=" CG  TYR A  50 "    0.026 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  50 "   -0.062 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  50 "   -0.085 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  50 "   -0.055 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  50 "   -0.045 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  50 "    0.024 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  50 "    0.313 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  50 "   -0.125 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  50 "   -0.191 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  50 "   -0.104 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  50 "   -0.064 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A 105 "    0.119 2.00e-02 2.50e+03   4.86e-02 7.08e+01
        model="   1" pdb=" CG  TYR A 105 "   -0.001 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A 105 "   -0.022 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A 105 "   -0.032 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A 105 "   -0.010 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A 105 "    0.000 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A 105 "    0.029 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A 105 "    0.061 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A 105 "   -0.043 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A 105 "   -0.073 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A 105 "   -0.029 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A 105 "    0.001 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  68 "   -0.104 2.00e-02 2.50e+03   4.27e-02 5.48e+01
        model="   1" pdb=" CG  TYR A  68 "    0.011 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  68 "    0.019 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  68 "    0.026 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  68 "    0.013 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  68 "    0.006 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  68 "   -0.020 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  68 "   -0.071 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  68 "    0.029 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  68 "    0.049 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  68 "    0.031 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  68 "    0.011 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.83 -     2.38: 824
        2.38 -     2.94: 4937
        2.94 -     3.49: 5024
        3.49 -     4.05: 6291
        4.05 -     4.60: 9211
  Nonbonded interactions: 26287
  Sorted by model distance:
  nonbonded model="   1" pdb=" O   ASP A  47 "
            model="   1" pdb=" H   TYR A  50 "
     model   vdw
     1.829 1.850
  nonbonded model="   1" pdb=" H   LEU A   2 "
            model="   1" pdb=" HG  LEU A   2 "
     model   vdw
     1.875 2.270
  nonbonded model="   1" pdb=" HB3 SER A  13 "
            model="   1" pdb="HE22 GLN A  66 "
     model   vdw
     1.935 2.270
  nonbonded model="   1" pdb=" O   GLU A  55 "
            model="   1" pdb=" H   LEU A  59 "
     model   vdw
     1.940 1.850
  nonbonded model="   1" pdb=" H   THR A   5 "
            model="   1" pdb=" OE1 GLU A   8 "
     model   vdw
     1.941 1.850
  ... (remaining 26282 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.
  Time building chain proxies: 1.13, per 1000 atoms: 0.51
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (76.186, 31.597, 73.66, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.
  Time building chain proxies: 1.13, per 1000 atoms: 0.51
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (61.091, 39.198, 47.669, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'CIS': 1, 'PTRANS': 7, 'TRANS': 130}
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'PTRANS': 7, 'TRANS': 131}
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'PTRANS': 7, 'TRANS': 131}
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'PTRANS': 7, 'TRANS': 131}
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'PTRANS': 7, 'TRANS': 131}
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'PTRANS': 7, 'TRANS': 131}
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'CIS': 3, 'PTRANS': 7, 'TRANS': 128}
  Time building chain proxies: 1.14, per 1000 atoms: 0.51
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (83.275, 48.651, 69.114, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'PTRANS': 7, 'TRANS': 131}
  Time building chain proxies: 1.13, per 1000 atoms: 0.51
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (95.865, 53.517, 56.866, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.
  Time building chain proxies: 0.61, per 1000 atoms: 0.28
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (89.792, 57.748, 81.627, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'PCIS': 1, 'PTRANS': 6, 'TRANS': 131}

  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 0.51
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 0.57 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'CIS': 1, 'PTRANS': 7, 'TRANS': 130}
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'PTRANS': 7, 'TRANS': 131}
  Time building chain proxies: 1.13, per 1000 atoms: 0.51
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (74.401, 34.627, 86.534, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.
  Time building chain proxies: 1.14, per 1000 atoms: 0.51
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (61.025, 48.815, 86.36, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'PTRANS': 7, 'TRANS': 131}
  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 126
        1.23 -     1.43: 343
        1.43 -     1.63: 662
        1.63 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" CE1 HIS A 134 "
       model="   1" pdb=" NE2 HIS A 134 "
    ideal  model  delta    sigma   weight residual
    1.321  1.357 -0.036 1.00e-02 1.00e+04 1.31e+01
  bond model="   1" pdb=" CE1 HIS A 138 "
       model="   1" pdb=" NE2 HIS A 138 "
    ideal  model  delta    sigma   weight residual
    1.321  1.356 -0.035 1.00e-02 1.00e+04 1.20e+01
  bond model="   1" pdb=" CE1 HIS A 139 "
       model="   1" pdb=" NE2 HIS A 139 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.18e+01
  bond model="   1" pdb=" CE1 HIS A 137 "
       model="   1" pdb=" NE2 HIS A 137 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.17e+01
  bond model="   1" pdb=" CE1 HIS A 136 "
       model="   1" pdb=" NE2 HIS A 136 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.16e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       95.50 -   103.36: 22
      103.36 -   111.22: 2349
      111.22 -   119.08: 837
      119.08 -   126.95: 840
      126.95 -   134.81: 29
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" CA  ASP A 116 "
        model="   1" pdb=" C   ASP A 116 "
        model="   1" pdb=" N   PRO A 117 "
      ideal   model   delta    sigma   weight residual
     116.90  128.18  -11.28 1.50e+00 4.44e-01 5.65e+01
  angle model="   1" pdb=" C   LEU A 132 "
        model="   1" pdb=" N   GLU A 133 "
        model="   1" pdb=" CA  GLU A 133 "
      ideal   model   delta    sigma   weight residual
     121.70  134.81  -13.11 1.80e+00 3.09e-01 5.30e+01
  angle model="   1" pdb=" CA  ASP A  29 "
        model="   1" pdb=" CB  ASP A  29 "
        model="   1" pdb=" CG  ASP A  29 "
      ideal   model   delta    sigma   weight residual
     112.60  118.23   -5.63 1.00e+00 1.00e+00 3.17e+01
  angle model="   1" pdb=" CA  LEU A 132 "
        model="   1" pdb=" C   LEU A 132 "
        model="   1" pdb=" N   GLU A 133 "
      ideal   model   delta    sigma   weight residual
     116.20  126.56  -10.36 2.00e+00 2.50e-01 2.69e+01
  angle model="   1" pdb=" ND1 HIS A 134 "
        model="   1" pdb=" CG  HIS A 134 "
        model="   1" pdb=" CD2 HIS A 134 "
      ideal   model   delta    sigma   weight residual
     106.10  111.07   -4.97 1.00e+00 1.00e+00 2.47e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    13.80: 951
       13.80 -    27.60: 60
       27.60 -    41.40: 11
       41.40 -    55.20: 6
       55.20 -    69.00: 4
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" CA  HIS A 137 "
           model="   1" pdb=" C   HIS A 137 "
           model="   1" pdb=" N   HIS A 138 "
           model="   1" pdb=" CA  HIS A 138 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  111.00   69.00     0      5.00e+00 4.00e-02 1.90e+02
  dihedral model="   1" pdb=" CA  HIS A 138 "
           model="   1" pdb=" C   HIS A 138 "
           model="   1" pdb=" N   HIS A 139 "
           model="   1" pdb=" CA  HIS A 139 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  125.25   54.75     0      5.00e+00 4.00e-02 1.20e+02
  dihedral model="   1" pdb=" CA  GLY A  87 "
           model="   1" pdb=" C   GLY A  87 "
           model="   1" pdb=" N   ASP A  88 "
           model="   1" pdb=" CA  ASP A  88 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  144.28   35.72     0      5.00e+00 4.00e-02 5.10e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.001 -    0.085: 123
       0.085 -    0.170: 38
       0.170 -    0.254: 11
       0.254 -    0.338: 3
       0.338 -    0.422: 1
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  ASP A  88 "
            model="   1" pdb=" N   ASP A  88 "
            model="   1" pdb=" C   ASP A  88 "
            model="   1" pdb=" CB  ASP A  88 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.09    0.42 2.00e-01 2.50e+01 4.46e+00
  chirality model="   1" pdb=" CA  PRO A  22 "
            model="   1" pdb=" N   PRO A  22 "
            model="   1" pdb=" C   PRO A  22 "
            model="   1" pdb=" CB  PRO A  22 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.72    2.45    0.27 2.00e-01 2.50e+01 1.76e+00
  chirality model="   1" pdb=" CA  GLU A 133 "
            model="   1" pdb=" N   GLU A 133 "
            model="   1" pdb=" C   GLU A 133 "
            model="   1" pdb=" CB  GLU A 133 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.25    0.26 2.00e-01 2.50e+01 1.74e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  68 "    0.057 2.00e-02 2.50e+03   8.05e-02 1.94e+02
        model="   1" pdb=" CG  TYR A  68 "    0.031 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  68 "    0.000 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  68 "    0.002 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  68 "   -0.048 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  68 "   -0.052 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  68 "   -0.015 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  68 "    0.211 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  68 "    0.011 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  68 "    0.019 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  68 "   -0.103 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  68 "   -0.113 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  PHE A  15 "   -0.125 2.00e-02 2.50e+03   5.71e-02 9.79e+01
        model="   1" pdb=" CG  PHE A  15 "   -0.008 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 PHE A  15 "    0.028 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 PHE A  15 "    0.027 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 PHE A  15 "    0.010 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 PHE A  15 "    0.014 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  PHE A  15 "   -0.037 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 PHE A  15 "    0.064 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 PHE A  15 "    0.059 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 PHE A  15 "    0.030 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 PHE A  15 "    0.040 2.00e-02 2.50e+03
        model="   1" pdb=" HZ  PHE A  15 "   -0.102 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A 111 "   -0.096 2.00e-02 2.50e+03   3.64e-02 3.96e+01
        model="   1" pdb=" CG  TYR A 111 "    0.018 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A 111 "    0.022 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A 111 "    0.023 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A 111 "    0.007 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A 111 "    0.005 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A 111 "   -0.001 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A 111 "   -0.050 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A 111 "    0.035 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A 111 "    0.039 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A 111 "    0.001 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A 111 "   -0.003 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.74 -     2.31: 365
        2.31 -     2.88: 5070
        2.88 -     3.45: 5115
        3.45 -     4.03: 6524
        4.03 -     4.60: 10106
  Nonbonded interactions: 27180
  Sorted by model distance:
  nonbonded model="   1" pdb=" HZ1 LYS A  10 "
            model="   1" pdb=" OD1 ASP A  23 "
     model   vdw
     1.736 1.850
  nonbonded model="   1" pdb="HG23 VAL A  41 "
            model="   1" pdb=" H   HIS A  43 "
     model   vdw
     1.743 2.270
  nonbonded model="   1" pdb=" OD1 ASP A  44 "
            model="   1" pdb=" H   SER A  46 "
     model   vdw
     1.763 1.850
  nonbonded model="   1" pdb="HE21 GLN A  28 "
            model="   1" pdb=" OE2 GLU A  32 "
     model   vdw
     1.865 1.850
  nonbonded model="   1" pdb=" OD1 ASP A  47 "
            model="   1" pdb=" H   TYR A  50 "
     model   vdw
     1.884 1.850
  ... (remaining 27175 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'PTRANS': 7, 'TRANS': 131}
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'PTRANS': 7, 'TRANS': 131}
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'PCIS': 1, 'PTRANS': 6, 'TRANS': 131}
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'CIS': 1, 'PTRANS': 7, 'TRANS': 130}
  Time building chain proxies: 0.97, per 1000 atoms: 0.44
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (62.575, 37.878, 77.177, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'PTRANS': 7, 'TRANS': 131}
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'PTRANS': 7, 'TRANS': 131}
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'PTRANS': 7, 'TRANS': 131}
  Time building chain proxies: 1.15, per 1000 atoms: 0.52
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (83.331, 49.799, 79.095, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'PTRANS': 7, 'TRANS': 131}
  Time building chain proxies: 1.05, per 1000 atoms: 0.47
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (85.076, 51.019, 73.629, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.
  Time building chain proxies: 1.13, per 1000 atoms: 0.51
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (59.821, 43.216, 86.359, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'PCIS': 1, 'PTRANS': 6, 'TRANS': 131}
  Time building chain proxies: 1.12, per 1000 atoms: 0.51
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (98.542, 69.732, 66.106, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.
  Time building chain proxies: 1.14, per 1000 atoms: 0.51
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (85.899, 51.556, 63.294, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.
  Time building chain proxies: 1.11, per 1000 atoms: 0.50
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (74.401, 34.627, 86.534, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.
  Time building chain proxies: 1.16, per 1000 atoms: 0.52
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (55.239, 69.984, 66.652, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'PTRANS': 7, 'TRANS': 131}
  Time building chain proxies: 1.14, per 1000 atoms: 0.51
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (73.106, 47.2, 79.546, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.
  Time building chain proxies: 1.12, per 1000 atoms: 0.51
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (56.206, 31.784, 83.675, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.
  Time building chain proxies: 1.14, per 1000 atoms: 0.51
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (100.963, 59.215, 63.046, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.
  Time building chain proxies: 1.13, per 1000 atoms: 0.51
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (81.419, 63.905, 70.937, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.
  Time building chain proxies: 1.13, per 1000 atoms: 0.51
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (71.918, 39.128, 78.635, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.

  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 0.98
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 1.07 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Time building chain proxies: 1.13, per 1000 atoms: 0.51
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (105.983, 38.298, 54.467, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.
  Time building chain proxies: 1.14, per 1000 atoms: 0.51
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (59.78, 49.993, 50.323, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'PTRANS': 7, 'TRANS': 131}
  Time building chain proxies: 1.13, per 1000 atoms: 0.51
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (61.659, 77.239, 97.189, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.
  Time building chain proxies: 1.14, per 1000 atoms: 0.51
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (61.556, 55.248, 76.038, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.
  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 105
        1.23 -     1.43: 356
        1.43 -     1.62: 670
        1.62 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" C   ALA A 115 "
       model="   1" pdb=" O   ALA A 115 "
    ideal  model  delta    sigma   weight residual
    1.231  1.154  0.077 2.00e-02 2.50e+03 1.48e+01
  bond model="   1" pdb=" CE1 HIS A 138 "
       model="   1" pdb=" NE2 HIS A 138 "
    ideal  model  delta    sigma   weight residual
    1.321  1.356 -0.035 1.00e-02 1.00e+04 1.24e+01
  bond model="   1" pdb=" CE1 HIS A 136 "
       model="   1" pdb=" NE2 HIS A 136 "
    ideal  model  delta    sigma   weight residual
    1.321  1.356 -0.035 1.00e-02 1.00e+04 1.24e+01
  bond model="   1" pdb=" CE1 HIS A 139 "
       model="   1" pdb=" NE2 HIS A 139 "
    ideal  model  delta    sigma   weight residual
    1.321  1.356 -0.035 1.00e-02 1.00e+04 1.23e+01
  bond model="   1" pdb=" CE1 HIS A  43 "
       model="   1" pdb=" NE2 HIS A  43 "
    ideal  model  delta    sigma   weight residual
    1.321  1.356 -0.035 1.00e-02 1.00e+04 1.22e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       92.21 -   102.01: 6
      102.01 -   111.82: 2513
      111.82 -   121.62: 1153
      121.62 -   131.42: 400
      131.42 -   141.23: 5
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" CA  ASP A 116 "
        model="   1" pdb=" C   ASP A 116 "
        model="   1" pdb=" N   PRO A 117 "
      ideal   model   delta    sigma   weight residual
     116.90  141.23  -24.33 1.50e+00 4.44e-01 2.63e+02
  angle model="   1" pdb=" O   ASP A 116 "
        model="   1" pdb=" C   ASP A 116 "
        model="   1" pdb=" N   PRO A 117 "
      ideal   model   delta    sigma   weight residual
     123.00  107.57   15.43 1.60e+00 3.91e-01 9.30e+01
  angle model="   1" pdb=" N   PRO A 117 "
        model="   1" pdb=" CA  PRO A 117 "
        model="   1" pdb=" C   PRO A 117 "
      ideal   model   delta    sigma   weight residual
     112.10  132.52  -20.42 2.50e+00 1.60e-01 6.67e+01
  angle model="   1" pdb=" CB  PRO A 117 "
        model="   1" pdb=" CA  PRO A 117 "
        model="   1" pdb=" HA  PRO A 117 "
      ideal   model   delta    sigma   weight residual
     109.00  130.59  -21.59 3.00e+00 1.11e-01 5.18e+01
  angle model="   1" pdb=" N   PRO A 117 "
        model="   1" pdb=" CA  PRO A 117 "
        model="   1" pdb=" CB  PRO A 117 "
      ideal   model   delta    sigma   weight residual
     103.00   96.49    6.51 1.10e+00 8.26e-01 3.50e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    13.05: 960
       13.05 -    26.10: 54
       26.10 -    39.15: 11
       39.15 -    52.21: 5
       52.21 -    65.26: 2
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" CA  ASP A 116 "
           model="   1" pdb=" C   ASP A 116 "
           model="   1" pdb=" N   PRO A 117 "
           model="   1" pdb=" CA  PRO A 117 "
      ideal   model   delta  harmonic     sigma   weight residual
       0.00  -37.06   37.06     0      5.00e+00 4.00e-02 5.49e+01
  dihedral model="   1" pdb=" CA  ALA A 115 "
           model="   1" pdb=" C   ALA A 115 "
           model="   1" pdb=" N   ASP A 116 "
           model="   1" pdb=" CA  ASP A 116 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  154.72   25.28     0      5.00e+00 4.00e-02 2.56e+01
  dihedral model="   1" pdb=" CA  ARG A  21 "
           model="   1" pdb=" C   ARG A  21 "
           model="   1" pdb=" N   PRO A  22 "
           model="   1" pdb=" CA  PRO A  22 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  156.14   23.86     0      5.00e+00 4.00e-02 2.28e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.001 -    0.104: 134
       0.104 -    0.206: 34
       0.206 -    0.309: 4
       0.309 -    0.411: 2
       0.411 -    0.514: 2
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  PRO A 117 "
            model="   1" pdb=" N   PRO A 117 "
            model="   1" pdb=" C   PRO A 117 "
            model="   1" pdb=" CB  PRO A 117 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.72    2.20    0.51 2.00e-01 2.50e+01 6.60e+00
  chirality model="   1" pdb=" CA  ASP A 116 "
            model="   1" pdb=" N   ASP A 116 "
            model="   1" pdb=" C   ASP A 116 "
            model="   1" pdb=" CB  ASP A 116 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.96   -0.45 2.00e-01 2.50e+01 5.06e+00
  chirality model="   1" pdb=" CA  ASP A 118 "
            model="   1" pdb=" N   ASP A 118 "
            model="   1" pdb=" C   ASP A 118 "
            model="   1" pdb=" CB  ASP A 118 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.15    0.36 2.00e-01 2.50e+01 3.17e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  PHE A  67 "    0.120 2.00e-02 2.50e+03   4.90e-02 7.21e+01
        model="   1" pdb=" CG  PHE A  67 "   -0.000 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 PHE A  67 "   -0.027 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 PHE A  67 "   -0.030 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 PHE A  67 "   -0.004 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 PHE A  67 "   -0.003 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  PHE A  67 "    0.024 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 PHE A  67 "   -0.062 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 PHE A  67 "   -0.068 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 PHE A  67 "   -0.006 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 PHE A  67 "   -0.004 2.00e-02 2.50e+03
        model="   1" pdb=" HZ  PHE A  67 "    0.061 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  81 "   -0.116 2.00e-02 2.50e+03   4.45e-02 5.95e+01
        model="   1" pdb=" CG  TYR A  81 "    0.024 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  81 "    0.025 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  81 "    0.029 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  81 "    0.007 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  81 "    0.007 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  81 "   -0.018 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  81 "   -0.063 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  81 "    0.039 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  81 "    0.047 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  81 "    0.012 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  81 "    0.007 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  50 "    0.094 2.00e-02 2.50e+03   4.22e-02 5.34e+01
        model="   1" pdb=" CG  TYR A  50 "   -0.007 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  50 "   -0.033 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  50 "   -0.010 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  50 "    0.006 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  50 "   -0.018 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  50 "    0.006 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  50 "    0.052 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  50 "   -0.076 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  50 "   -0.007 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  50 "    0.031 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  50 "   -0.038 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.76 -     2.33: 421
        2.33 -     2.90: 5056
        2.90 -     3.46: 4874
        3.46 -     4.03: 6472
        4.03 -     4.60: 9488
  Nonbonded interactions: 26311
  Sorted by model distance:
  nonbonded model="   1" pdb=" OD2 ASP A  36 "
            model="   1" pdb=" HH  TYR A  68 "
     model   vdw
     1.760 1.850
  nonbonded model="   1" pdb=" OE1 GLU A  55 "
            model="   1" pdb=" HE  ARG A  58 "
     model   vdw
     1.789 1.850
  nonbonded model="   1" pdb=" OD1 ASP A   7 "
            model="   1" pdb=" HZ2 LYS A  10 "
     model   vdw
     1.799 1.850
  nonbonded model="   1" pdb=" OE2 GLU A  55 "
            model="   1" pdb="HH21 ARG A  58 "
     model   vdw
     1.802 1.850
  nonbonded model="   1" pdb="HE21 GLN A  28 "
            model="   1" pdb=" OE2 GLU A  32 "
     model   vdw
     1.838 1.850
  ... (remaining 26306 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.
  Time building chain proxies: 1.13, per 1000 atoms: 0.51
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (96.65, 52.746, 57.979, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.

  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 1.00
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 1.12 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Time building chain proxies: 1.22, per 1000 atoms: 0.55
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (56.894, 45.211, 76.658, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.
  Time building chain proxies: 1.17, per 1000 atoms: 0.53
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (67.07, 53.026, 52.748, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.
  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 117
        1.23 -     1.43: 359
        1.43 -     1.63: 655
        1.63 -     1.83: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" CD  ARG A 127 "
       model="   1" pdb=" NE  ARG A 127 "
    ideal  model  delta    sigma   weight residual
    1.458  1.512 -0.054 1.40e-02 5.10e+03 1.50e+01
  bond model="   1" pdb=" CE1 HIS A 136 "
       model="   1" pdb=" NE2 HIS A 136 "
    ideal  model  delta    sigma   weight residual
    1.321  1.356 -0.035 1.00e-02 1.00e+04 1.23e+01
  bond model="   1" pdb=" CD  ARG A 129 "
       model="   1" pdb=" NE  ARG A 129 "
    ideal  model  delta    sigma   weight residual
    1.458  1.507 -0.049 1.40e-02 5.10e+03 1.22e+01
  bond model="   1" pdb=" CE1 HIS A 137 "
       model="   1" pdb=" NE2 HIS A 137 "
    ideal  model  delta    sigma   weight residual
    1.321  1.356 -0.035 1.00e-02 1.00e+04 1.20e+01
  bond model="   1" pdb=" CE1 HIS A 138 "
       model="   1" pdb=" NE2 HIS A 138 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.14e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       93.49 -   101.02: 13
      101.02 -   108.55: 767
      108.55 -   116.08: 2199
      116.08 -   123.61: 925
      123.61 -   131.14: 173
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" CA  LYS A 101 "
        model="   1" pdb=" C   LYS A 101 "
        model="   1" pdb=" N   PRO A 102 "
      ideal   model   delta    sigma   weight residual
     116.90  128.77  -11.87 1.50e+00 4.44e-01 6.26e+01
  angle model="   1" pdb=" CD1 LEU A   2 "
        model="   1" pdb=" CG  LEU A   2 "
        model="   1" pdb=" CD2 LEU A   2 "
      ideal   model   delta    sigma   weight residual
     110.80   97.40   13.40 2.20e+00 2.07e-01 3.71e+01
  angle model="   1" pdb=" CA  ASP A 116 "
        model="   1" pdb=" C   ASP A 116 "
        model="   1" pdb=" N   PRO A 117 "
      ideal   model   delta    sigma   weight residual
     116.90  125.95   -9.05 1.50e+00 4.44e-01 3.64e+01
  angle model="   1" pdb=" CA  ILE A  30 "
        model="   1" pdb=" CB  ILE A  30 "
        model="   1" pdb=" CG1 ILE A  30 "
      ideal   model   delta    sigma   weight residual
     110.40  120.02   -9.62 1.70e+00 3.46e-01 3.20e+01
  angle model="   1" pdb=" CB  LEU A   2 "
        model="   1" pdb=" CG  LEU A   2 "
        model="   1" pdb=" HG  LEU A   2 "
      ideal   model   delta    sigma   weight residual
     109.00   93.49   15.51 3.00e+00 1.11e-01 2.67e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    12.00: 922
       12.00 -    24.00: 82
       24.00 -    35.99: 19
       35.99 -    47.99: 5
       47.99 -    59.99: 4
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" CA  ILE A  51 "
           model="   1" pdb=" C   ILE A  51 "
           model="   1" pdb=" N   PRO A  52 "
           model="   1" pdb=" CA  PRO A  52 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  149.97   30.03     0      5.00e+00 4.00e-02 3.61e+01
  dihedral model="   1" pdb=" N   ASP A 116 "
           model="   1" pdb=" C   ASP A 116 "
           model="   1" pdb=" CA  ASP A 116 "
           model="   1" pdb=" CB  ASP A 116 "
      ideal   model   delta  harmonic     sigma   weight residual
     122.80  137.19  -14.39     0      2.50e+00 1.60e-01 3.31e+01
  dihedral model="   1" pdb=" C   ASP A 116 "
           model="   1" pdb=" N   ASP A 116 "
           model="   1" pdb=" CA  ASP A 116 "
           model="   1" pdb=" CB  ASP A 116 "
      ideal   model   delta  harmonic     sigma   weight residual
    -122.60 -136.97   14.37     0      2.50e+00 1.60e-01 3.31e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.000 -    0.117: 130
       0.117 -    0.234: 31
       0.234 -    0.351: 11
       0.351 -    0.467: 3
       0.467 -    0.584: 1
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  ASP A 116 "
            model="   1" pdb=" N   ASP A 116 "
            model="   1" pdb=" C   ASP A 116 "
            model="   1" pdb=" CB  ASP A 116 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    1.93    0.58 2.00e-01 2.50e+01 8.54e+00
  chirality model="   1" pdb=" CA  ARG A 127 "
            model="   1" pdb=" N   ARG A 127 "
            model="   1" pdb=" C   ARG A 127 "
            model="   1" pdb=" CB  ARG A 127 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.87   -0.36 2.00e-01 2.50e+01 3.22e+00
  chirality model="   1" pdb=" CB  ILE A  71 "
            model="   1" pdb=" CA  ILE A  71 "
            model="   1" pdb=" CG1 ILE A  71 "
            model="   1" pdb=" CG2 ILE A  71 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.64    2.29    0.36 2.00e-01 2.50e+01 3.17e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A 111 "   -0.015 2.00e-02 2.50e+03   8.93e-02 2.39e+02
        model="   1" pdb=" CG  TYR A 111 "    0.035 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A 111 "    0.050 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A 111 "   -0.017 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A 111 "   -0.074 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A 111 "   -0.008 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A 111 "   -0.009 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A 111 "    0.152 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A 111 "    0.142 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A 111 "   -0.057 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A 111 "   -0.198 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A 111 "   -0.001 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  PHE A  45 "    0.118 2.00e-02 2.50e+03   5.74e-02 9.90e+01
        model="   1" pdb=" CG  PHE A  45 "   -0.014 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 PHE A  45 "   -0.047 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 PHE A  45 "   -0.011 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 PHE A  45 "    0.014 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 PHE A  45 "   -0.022 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  PHE A  45 "    0.024 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 PHE A  45 "   -0.110 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 PHE A  45 "   -0.002 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 PHE A  45 "    0.048 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 PHE A  45 "   -0.060 2.00e-02 2.50e+03
        model="   1" pdb=" HZ  PHE A  45 "    0.062 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A 105 "   -0.026 2.00e-02 2.50e+03   5.67e-02 9.64e+01
        model="   1" pdb=" CG  TYR A 105 "    0.031 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A 105 "   -0.022 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A 105 "    0.038 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A 105 "    0.028 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A 105 "   -0.033 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A 105 "   -0.000 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A 105 "    0.004 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A 105 "   -0.090 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A 105 "    0.091 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A 105 "    0.080 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A 105 "   -0.102 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.61 -     2.20: 148
        2.20 -     2.80: 4445
        2.80 -     3.40: 5710
        3.40 -     4.00: 7150
        4.00 -     4.60: 10590
  Nonbonded interactions: 28043
  Sorted by model distance:
  nonbonded model="   1" pdb=" HB2 LYS A 109 "
            model="   1" pdb="HD13 LEU A 119 "
     model   vdw
     1.606 2.440
  nonbonded model="   1" pdb=" OE1 GLU A  55 "
            model="   1" pdb=" HE  ARG A  58 "
     model   vdw
     1.723 1.850
  nonbonded model="   1" pdb=" HZ2 LYS A 109 "
            model="   1" pdb=" OD1 ASP A 110 "
     model   vdw
     1.738 1.850
  nonbonded model="   1" pdb=" OE2 GLU A 120 "
            model="   1" pdb="HH21 ARG A 127 "
     model   vdw
     1.743 1.850
  nonbonded model="   1" pdb=" OE2 GLU A  55 "
            model="   1" pdb="HH21 ARG A  58 "
     model   vdw
     1.749 1.850
  ... (remaining 28038 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.
  Time building chain proxies: 1.14, per 1000 atoms: 0.51
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (97.178, 54.705, 59.633, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.
  Time building chain proxies: 1.25, per 1000 atoms: 0.56
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (103.019, 60.104, 59.609, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.

  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 0.53
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 0.61 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 131
        1.23 -     1.43: 333
        1.43 -     1.63: 667
        1.63 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" CD  ARG A  21 "
       model="   1" pdb=" NE  ARG A  21 "
    ideal  model  delta    sigma   weight residual
    1.458  1.510 -0.052 1.40e-02 5.10e+03 1.40e+01
  bond model="   1" pdb=" CE1 HIS A 135 "
       model="   1" pdb=" NE2 HIS A 135 "
    ideal  model  delta    sigma   weight residual
    1.321  1.356 -0.035 1.00e-02 1.00e+04 1.23e+01
  bond model="   1" pdb=" CE1 HIS A 139 "
       model="   1" pdb=" NE2 HIS A 139 "
    ideal  model  delta    sigma   weight residual
    1.321  1.356 -0.035 1.00e-02 1.00e+04 1.22e+01
  bond model="   1" pdb=" CE1 HIS A 138 "
       model="   1" pdb=" NE2 HIS A 138 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.17e+01
  bond model="   1" pdb=" CE1 HIS A 134 "
       model="   1" pdb=" NE2 HIS A 134 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.17e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       95.79 -   103.06: 37
      103.06 -   110.34: 2151
      110.34 -   117.62: 897
      117.62 -   124.89: 916
      124.89 -   132.17: 76
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" CA  ASP A 116 "
        model="   1" pdb=" C   ASP A 116 "
        model="   1" pdb=" N   PRO A 117 "
      ideal   model   delta    sigma   weight residual
     116.90  128.90  -12.00 1.50e+00 4.44e-01 6.40e+01
  angle model="   1" pdb=" CA  LYS A 113 "
        model="   1" pdb=" C   LYS A 113 "
        model="   1" pdb=" N   PRO A 114 "
      ideal   model   delta    sigma   weight residual
     116.90  128.88  -11.98 1.50e+00 4.44e-01 6.38e+01
  angle model="   1" pdb=" N   SER A 130 "
        model="   1" pdb=" CA  SER A 130 "
        model="   1" pdb=" CB  SER A 130 "
      ideal   model   delta    sigma   weight residual
     110.50  122.48  -11.98 1.70e+00 3.46e-01 4.97e+01
  angle model="   1" pdb=" N   HIS A 136 "
        model="   1" pdb=" CA  HIS A 136 "
        model="   1" pdb=" CB  HIS A 136 "
      ideal   model   delta    sigma   weight residual
     110.50  121.58  -11.08 1.70e+00 3.46e-01 4.25e+01
  angle model="   1" pdb=" C   ARG A 129 "
        model="   1" pdb=" N   SER A 130 "
        model="   1" pdb=" CA  SER A 130 "
      ideal   model   delta    sigma   weight residual
     121.70  132.17  -10.47 1.80e+00 3.09e-01 3.38e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    24.27: 989
       24.27 -    48.55: 31
       48.55 -    72.82: 8
       72.82 -    97.09: 2
       97.09 -   121.36: 2
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" CA  ARG A 127 "
           model="   1" pdb=" C   ARG A 127 "
           model="   1" pdb=" N   MET A 128 "
           model="   1" pdb=" CA  MET A 128 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00   58.64  121.36     0      5.00e+00 4.00e-02 5.89e+02
  dihedral model="   1" pdb=" CA  HIS A 136 "
           model="   1" pdb=" C   HIS A 136 "
           model="   1" pdb=" N   HIS A 137 "
           model="   1" pdb=" CA  HIS A 137 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00   62.89  117.11     0      5.00e+00 4.00e-02 5.49e+02
  dihedral model="   1" pdb=" CA  LEU A 132 "
           model="   1" pdb=" C   LEU A 132 "
           model="   1" pdb=" N   GLU A 133 "
           model="   1" pdb=" CA  GLU A 133 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  101.43   78.57     0      5.00e+00 4.00e-02 2.47e+02
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.002 -    0.150: 147
       0.150 -    0.299: 17
       0.299 -    0.448: 8
       0.448 -    0.596: 2
       0.596 -    0.745: 2
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  ARG A 129 "
            model="   1" pdb=" N   ARG A 129 "
            model="   1" pdb=" C   ARG A 129 "
            model="   1" pdb=" CB  ARG A 129 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    1.77    0.74 2.00e-01 2.50e+01 1.39e+01
  chirality model="   1" pdb=" CA  HIS A 136 "
            model="   1" pdb=" N   HIS A 136 "
            model="   1" pdb=" C   HIS A 136 "
            model="   1" pdb=" CB  HIS A 136 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    1.83    0.68 2.00e-01 2.50e+01 1.15e+01
  chirality model="   1" pdb=" CA  ILE A 131 "
            model="   1" pdb=" N   ILE A 131 "
            model="   1" pdb=" C   ILE A 131 "
            model="   1" pdb=" CB  ILE A 131 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.43    1.84    0.59 2.00e-01 2.50e+01 8.82e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  81 "    0.124 2.00e-02 2.50e+03   6.36e-02 1.21e+02
        model="   1" pdb=" CG  TYR A  81 "   -0.026 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  81 "   -0.051 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  81 "   -0.006 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  81 "    0.011 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  81 "   -0.035 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  81 "   -0.006 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  81 "    0.081 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  81 "   -0.108 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  81 "    0.028 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  81 "    0.063 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  81 "   -0.073 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  HIS A 134 "    0.096 2.00e-02 2.50e+03   5.70e-02 6.51e+01
        model="   1" pdb=" CG  HIS A 134 "   -0.088 2.00e-02 2.50e+03
        model="   1" pdb=" ND1 HIS A 134 "   -0.071 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 HIS A 134 "   -0.017 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 HIS A 134 "    0.009 2.00e-02 2.50e+03
        model="   1" pdb=" NE2 HIS A 134 "    0.046 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 HIS A 134 "   -0.013 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 HIS A 134 "    0.037 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  50 "   -0.038 2.00e-02 2.50e+03   4.43e-02 5.88e+01
        model="   1" pdb=" CG  TYR A  50 "    0.023 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  50 "    0.034 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  50 "   -0.009 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  50 "   -0.027 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  50 "    0.016 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  50 "    0.011 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  50 "    0.013 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  50 "    0.082 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  50 "   -0.047 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  50 "   -0.094 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  50 "    0.036 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.68 -     2.26: 228
        2.26 -     2.85: 4763
        2.85 -     3.43: 5412
        3.43 -     4.02: 6586
        4.02 -     4.60: 9811
  Nonbonded interactions: 26800
  Sorted by model distance:
  nonbonded model="   1" pdb="HH22 ARG A  21 "
            model="   1" pdb=" OE2 GLU A  75 "
     model   vdw
     1.675 1.850
  nonbonded model="   1" pdb=" OE2 GLU A  55 "
            model="   1" pdb="HH21 ARG A  58 "
     model   vdw
     1.734 1.850
  nonbonded model="   1" pdb=" HG3 LYS A  40 "
            model="   1" pdb="HE22 GLN A 100 "
     model   vdw
     1.737 2.270
  nonbonded model="   1" pdb="HG13 VAL A  18 "
            model="   1" pdb=" HE  ARG A  21 "
     model   vdw
     1.772 2.270
  nonbonded model="   1" pdb=" OE1 GLU A  55 "
            model="   1" pdb=" HE  ARG A  58 "
     model   vdw
     1.782 1.850
  ... (remaining 26795 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 0.97
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 1.10 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 123
        1.23 -     1.43: 349
        1.43 -     1.63: 659
        1.63 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" C   PRO A 117 "
       model="   1" pdb=" N   ASP A 118 "
    ideal  model  delta    sigma   weight residual
    1.329  1.383 -0.054 1.40e-02 5.10e+03 1.51e+01
  bond model="   1" pdb=" CE1 HIS A 139 "
       model="   1" pdb=" NE2 HIS A 139 "
    ideal  model  delta    sigma   weight residual
    1.321  1.356 -0.035 1.00e-02 1.00e+04 1.26e+01
  bond model="   1" pdb=" CE1 HIS A 135 "
       model="   1" pdb=" NE2 HIS A 135 "
    ideal  model  delta    sigma   weight residual
    1.321  1.356 -0.035 1.00e-02 1.00e+04 1.22e+01
  bond model="   1" pdb=" C   ASP A 118 "
       model="   1" pdb=" N   LEU A 119 "
    ideal  model  delta    sigma   weight residual
    1.329  1.378 -0.049 1.40e-02 5.10e+03 1.22e+01
  bond model="   1" pdb=" N   ASP A 118 "
       model="   1" pdb=" CA  ASP A 118 "
    ideal  model  delta    sigma   weight residual
    1.458  1.523 -0.065 1.90e-02 2.77e+03 1.18e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       92.00 -   100.75: 18
      100.75 -   109.50: 1700
      109.50 -   118.25: 1394
      118.25 -   126.99: 934
      126.99 -   135.74: 31
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" CA  PRO A 117 "
        model="   1" pdb=" C   PRO A 117 "
        model="   1" pdb=" N   ASP A 118 "
      ideal   model   delta    sigma   weight residual
     116.20  135.74  -19.54 2.00e+00 2.50e-01 9.54e+01
  angle model="   1" pdb=" N   PRO A 117 "
        model="   1" pdb=" CA  PRO A 117 "
        model="   1" pdb=" C   PRO A 117 "
      ideal   model   delta    sigma   weight residual
     112.10  134.85  -22.75 2.50e+00 1.60e-01 8.28e+01
  angle model="   1" pdb=" CB  PRO A 117 "
        model="   1" pdb=" CA  PRO A 117 "
        model="   1" pdb=" HA  PRO A 117 "
      ideal   model   delta    sigma   weight residual
     109.00  132.15  -23.15 3.00e+00 1.11e-01 5.96e+01
  angle model="   1" pdb=" N   SER A 130 "
        model="   1" pdb=" CA  SER A 130 "
        model="   1" pdb=" CB  SER A 130 "
      ideal   model   delta    sigma   weight residual
     110.50  123.17  -12.67 1.70e+00 3.46e-01 5.56e+01
  angle model="   1" pdb=" CA  HIS A 135 "
        model="   1" pdb=" CB  HIS A 135 "
        model="   1" pdb=" CG  HIS A 135 "
      ideal   model   delta    sigma   weight residual
     113.80  121.05   -7.25 1.00e+00 1.00e+00 5.26e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    14.65: 952
       14.65 -    29.29: 50
       29.29 -    43.94: 16
       43.94 -    58.58: 8
       58.58 -    73.23: 6
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" CA  ASP A 116 "
           model="   1" pdb=" C   ASP A 116 "
           model="   1" pdb=" N   PRO A 117 "
           model="   1" pdb=" CA  PRO A 117 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00 -106.77  -73.23     0      5.00e+00 4.00e-02 2.15e+02
  dihedral model="   1" pdb=" CA  LEU A 132 "
           model="   1" pdb=" C   LEU A 132 "
           model="   1" pdb=" N   GLU A 133 "
           model="   1" pdb=" CA  GLU A 133 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  113.57   66.43     0      5.00e+00 4.00e-02 1.77e+02
  dihedral model="   1" pdb=" CA  HIS A 136 "
           model="   1" pdb=" C   HIS A 136 "
           model="   1" pdb=" N   HIS A 137 "
           model="   1" pdb=" CA  HIS A 137 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  118.99   61.01     0      5.00e+00 4.00e-02 1.49e+02
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.000 -    0.124: 137
       0.124 -    0.248: 25
       0.248 -    0.371: 7
       0.371 -    0.495: 6
       0.495 -    0.619: 1
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  PRO A 117 "
            model="   1" pdb=" N   PRO A 117 "
            model="   1" pdb=" C   PRO A 117 "
            model="   1" pdb=" CB  PRO A 117 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.72    2.10    0.62 2.00e-01 2.50e+01 9.57e+00
  chirality model="   1" pdb=" CA  HIS A 136 "
            model="   1" pdb=" N   HIS A 136 "
            model="   1" pdb=" C   HIS A 136 "
            model="   1" pdb=" CB  HIS A 136 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.05    0.46 2.00e-01 2.50e+01 5.23e+00
  chirality model="   1" pdb=" CA  GLU A 133 "
            model="   1" pdb=" N   GLU A 133 "
            model="   1" pdb=" C   GLU A 133 "
            model="   1" pdb=" CB  GLU A 133 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.07    0.44 2.00e-01 2.50e+01 4.79e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A 105 "   -0.200 2.00e-02 2.50e+03   8.24e-02 2.04e+02
        model="   1" pdb=" CG  TYR A 105 "    0.017 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A 105 "    0.040 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A 105 "    0.044 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A 105 "    0.026 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A 105 "    0.021 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A 105 "   -0.020 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A 105 "   -0.151 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A 105 "    0.066 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A 105 "    0.079 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A 105 "    0.046 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A 105 "    0.032 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  50 "   -0.147 2.00e-02 2.50e+03   6.57e-02 1.30e+02
        model="   1" pdb=" CG  TYR A  50 "   -0.020 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  50 "    0.025 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  50 "    0.034 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  50 "    0.017 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  50 "    0.010 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  50 "   -0.043 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  50 "   -0.105 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  50 "    0.060 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  50 "    0.088 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  50 "    0.053 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  50 "    0.028 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  HIS A 135 "   -0.125 2.00e-02 2.50e+03   7.46e-02 1.11e+02
        model="   1" pdb=" CG  HIS A 135 "    0.111 2.00e-02 2.50e+03
        model="   1" pdb=" ND1 HIS A 135 "    0.097 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 HIS A 135 "    0.022 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 HIS A 135 "   -0.012 2.00e-02 2.50e+03
        model="   1" pdb=" NE2 HIS A 135 "   -0.062 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 HIS A 135 "    0.018 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 HIS A 135 "   -0.049 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.72 -     2.29: 325
        2.29 -     2.87: 4911
        2.87 -     3.45: 5085
        3.45 -     4.02: 6563
        4.02 -     4.60: 9798
  Nonbonded interactions: 26682
  Sorted by model distance:
  nonbonded model="   1" pdb=" H   ASP A 116 "
            model="   1" pdb=" HB2 ASP A 116 "
     model   vdw
     1.717 2.270
  nonbonded model="   1" pdb=" H3  MET A   1 "
            model="   1" pdb=" OD1 ASP A  47 "
     model   vdw
     1.717 1.850
  nonbonded model="   1" pdb="HD22 LEU A   3 "
            model="   1" pdb="HD22 LEU A  53 "
     model   vdw
     1.807 2.440
  nonbonded model="   1" pdb=" OE2 GLU A  55 "
            model="   1" pdb="HH11 ARG A  58 "
     model   vdw
     1.820 1.850
  nonbonded model="   1" pdb=" OE2 GLU A  16 "
            model="   1" pdb=" HZ1 LYS A  19 "
     model   vdw
     1.823 1.850
  ... (remaining 26677 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 0.88
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 0.99 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.


  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 0.97
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 1.11 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 115
        1.23 -     1.43: 351
        1.43 -     1.62: 664
        1.62 -     1.82: 5
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" C   ASP A 116 "
       model="   1" pdb=" N   PRO A 117 "
    ideal  model  delta    sigma   weight residual
    1.341  1.451 -0.110 1.60e-02 3.91e+03 4.73e+01
  bond model="   1" pdb=" CA  ASP A 116 "
       model="   1" pdb=" CB  ASP A 116 "
    ideal  model  delta    sigma   weight residual
    1.530  1.652 -0.122 2.00e-02 2.50e+03 3.71e+01
  bond model="   1" pdb=" N   PRO A 117 "
       model="   1" pdb=" CA  PRO A 117 "
    ideal  model  delta    sigma   weight residual
    1.466  1.544 -0.078 1.50e-02 4.44e+03 2.69e+01
  bond model="   1" pdb=" CA  ASP A 116 "
       model="   1" pdb=" C   ASP A 116 "
    ideal  model  delta    sigma   weight residual
    1.525  1.617 -0.092 2.10e-02 2.27e+03 1.93e+01
  bond model="   1" pdb=" N   PRO A 117 "
       model="   1" pdb=" CD  PRO A 117 "
    ideal  model  delta    sigma   weight residual
    1.473  1.525 -0.052 1.40e-02 5.10e+03 1.38e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       96.44 -   104.80: 67
      104.80 -   113.16: 2665
      113.16 -   121.52: 900
      121.52 -   129.88: 437
      129.88 -   138.24: 8
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" CA  ASP A 116 "
        model="   1" pdb=" C   ASP A 116 "
        model="   1" pdb=" N   PRO A 117 "
      ideal   model   delta    sigma   weight residual
     116.90  138.24  -21.34 1.50e+00 4.44e-01 2.02e+02
  angle model="   1" pdb=" CA  ASP A 116 "
        model="   1" pdb=" C   ASP A 116 "
        model="   1" pdb=" O   ASP A 116 "
      ideal   model   delta    sigma   weight residual
     120.80  106.35   14.45 1.70e+00 3.46e-01 7.23e+01
  angle model="   1" pdb=" C   PRO A 117 "
        model="   1" pdb=" N   ASP A 118 "
        model="   1" pdb=" CA  ASP A 118 "
      ideal   model   delta    sigma   weight residual
     121.70  133.25  -11.55 1.80e+00 3.09e-01 4.11e+01
  angle model="   1" pdb=" C   ASP A 116 "
        model="   1" pdb=" N   PRO A 117 "
        model="   1" pdb=" CD  PRO A 117 "
      ideal   model   delta    sigma   weight residual
     125.00  101.21   23.79 4.10e+00 5.95e-02 3.37e+01
  angle model="   1" pdb=" O   ASP A 116 "
        model="   1" pdb=" C   ASP A 116 "
        model="   1" pdb=" N   PRO A 117 "
      ideal   model   delta    sigma   weight residual
     123.00  114.31    8.69 1.60e+00 3.91e-01 2.95e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    21.66: 981
       21.66 -    43.31: 39
       43.31 -    64.97: 9
       64.97 -    86.63: 2
       86.63 -   108.29: 1
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" CA  ASP A  47 "
           model="   1" pdb=" C   ASP A  47 "
           model="   1" pdb=" N   ALA A  48 "
           model="   1" pdb=" CA  ALA A  48 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00   71.71  108.29     0      5.00e+00 4.00e-02 4.69e+02
  dihedral model="   1" pdb=" CA  ASP A 116 "
           model="   1" pdb=" C   ASP A 116 "
           model="   1" pdb=" N   PRO A 117 "
           model="   1" pdb=" CA  PRO A 117 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  100.00   80.00     0      5.00e+00 4.00e-02 2.56e+02
  dihedral model="   1" pdb=" CA  LEU A 119 "
           model="   1" pdb=" C   LEU A 119 "
           model="   1" pdb=" N   GLU A 120 "
           model="   1" pdb=" CA  GLU A 120 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  124.45   55.55     0      5.00e+00 4.00e-02 1.23e+02
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.000 -    0.142: 157
       0.142 -    0.283: 10
       0.283 -    0.425: 8
       0.425 -    0.567: 0
       0.567 -    0.708: 1
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  ASP A 116 "
            model="   1" pdb=" N   ASP A 116 "
            model="   1" pdb=" C   ASP A 116 "
            model="   1" pdb=" CB  ASP A 116 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    3.22   -0.71 2.00e-01 2.50e+01 1.25e+01
  chirality model="   1" pdb=" CA  PRO A 117 "
            model="   1" pdb=" N   PRO A 117 "
            model="   1" pdb=" C   PRO A 117 "
            model="   1" pdb=" CB  PRO A 117 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.72    3.14   -0.42 2.00e-01 2.50e+01 4.42e+00
  chirality model="   1" pdb=" CA  ASP A  74 "
            model="   1" pdb=" N   ASP A  74 "
            model="   1" pdb=" C   ASP A  74 "
            model="   1" pdb=" CB  ASP A  74 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.19    0.32 2.00e-01 2.50e+01 2.50e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  91 "   -0.206 2.00e-02 2.50e+03   1.10e-01 3.62e+02
        model="   1" pdb=" CG  TYR A  91 "   -0.025 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  91 "    0.036 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  91 "    0.035 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  91 "    0.050 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  91 "    0.052 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  91 "    0.008 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  91 "   -0.263 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  91 "    0.067 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  91 "    0.064 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  91 "    0.088 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  91 "    0.094 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  68 "   -0.097 2.00e-02 2.50e+03   4.42e-02 5.85e+01
        model="   1" pdb=" CG  TYR A  68 "   -0.005 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  68 "    0.016 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  68 "    0.024 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  68 "    0.015 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  68 "    0.005 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  68 "   -0.033 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  68 "   -0.072 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  68 "    0.029 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  68 "    0.057 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  68 "    0.046 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  68 "    0.017 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" C   ASP A 116 "    0.116 5.00e-02 4.00e+02   1.77e-01 5.02e+01
        model="   1" pdb=" N   PRO A 117 "   -0.306 5.00e-02 4.00e+02
        model="   1" pdb=" CA  PRO A 117 "    0.113 5.00e-02 4.00e+02
        model="   1" pdb=" CD  PRO A 117 "    0.076 5.00e-02 4.00e+02
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.65 -     2.24: 199
        2.24 -     2.83: 4647
        2.83 -     3.42: 5482
        3.42 -     4.01: 6689
        4.01 -     4.60: 10029
  Nonbonded interactions: 27046
  Sorted by model distance:
  nonbonded model="   1" pdb="HG23 VAL A  41 "
            model="   1" pdb=" H   HIS A  43 "
     model   vdw
     1.653 2.270
  nonbonded model="   1" pdb=" OE2 GLU A  24 "
            model="   1" pdb=" HZ2 LYS A  27 "
     model   vdw
     1.854 1.850
  nonbonded model="   1" pdb="HD23 LEU A  99 "
            model="   1" pdb="HG11 VAL A 104 "
     model   vdw
     1.867 2.440
  nonbonded model="   1" pdb=" HD2 PHE A  45 "
            model="   1" pdb=" HH  TYR A 111 "
     model   vdw
     1.882 2.100
  nonbonded model="   1" pdb=" HB3 GLU A  84 "
            model="   1" pdb=" H   LYS A  85 "
     model   vdw
     1.893 2.270
  ... (remaining 27041 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 1.02
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 1.15 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.


  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 0.94
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 1.06 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.


  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 0.93
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 1.05 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 116
        1.23 -     1.43: 354
        1.43 -     1.63: 661
        1.63 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" CD  ARG A 127 "
       model="   1" pdb=" NE  ARG A 127 "
    ideal  model  delta    sigma   weight residual
    1.458  1.508 -0.050 1.40e-02 5.10e+03 1.30e+01
  bond model="   1" pdb=" CE1 HIS A  43 "
       model="   1" pdb=" NE2 HIS A  43 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.13e+01
  bond model="   1" pdb=" CD  ARG A  21 "
       model="   1" pdb=" NE  ARG A  21 "
    ideal  model  delta    sigma   weight residual
    1.458  1.505 -0.047 1.40e-02 5.10e+03 1.12e+01
  bond model="   1" pdb=" CD  ARG A  58 "
       model="   1" pdb=" NE  ARG A  58 "
    ideal  model  delta    sigma   weight residual
    1.458  1.505 -0.047 1.40e-02 5.10e+03 1.11e+01
  bond model="   1" pdb=" C   PRO A 117 "
       model="   1" pdb=" N   ASP A 118 "
    ideal  model  delta    sigma   weight residual
    1.329  1.375 -0.046 1.40e-02 5.10e+03 1.06e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       96.75 -   103.62: 24
      103.62 -   110.48: 2216
      110.48 -   117.35: 845
      117.35 -   124.22: 879
      124.22 -   131.09: 113
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" CA  ILE A  51 "
        model="   1" pdb=" C   ILE A  51 "
        model="   1" pdb=" N   PRO A  52 "
      ideal   model   delta    sigma   weight residual
     116.90  126.33   -9.43 1.50e+00 4.44e-01 3.95e+01
  angle model="   1" pdb=" N   PRO A 117 "
        model="   1" pdb=" CA  PRO A 117 "
        model="   1" pdb=" CB  PRO A 117 "
      ideal   model   delta    sigma   weight residual
     103.00   96.75    6.25 1.10e+00 8.26e-01 3.23e+01
  angle model="   1" pdb=" C   ASP A 116 "
        model="   1" pdb=" CA  ASP A 116 "
        model="   1" pdb=" CB  ASP A 116 "
      ideal   model   delta    sigma   weight residual
     110.10  120.58  -10.48 1.90e+00 2.77e-01 3.04e+01
  angle model="   1" pdb=" CB  PRO A 117 "
        model="   1" pdb=" CA  PRO A 117 "
        model="   1" pdb=" HA  PRO A 117 "
      ideal   model   delta    sigma   weight residual
     109.00  124.84  -15.84 3.00e+00 1.11e-01 2.79e+01
  angle model="   1" pdb=" N   PRO A 117 "
        model="   1" pdb=" CA  PRO A 117 "
        model="   1" pdb=" C   PRO A 117 "
      ideal   model   delta    sigma   weight residual
     112.10  124.70  -12.60 2.50e+00 1.60e-01 2.54e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    13.86: 961
       13.86 -    27.72: 45
       27.72 -    41.57: 16
       41.57 -    55.43: 7
       55.43 -    69.29: 3
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" CA  ASP A 116 "
           model="   1" pdb=" C   ASP A 116 "
           model="   1" pdb=" N   PRO A 117 "
           model="   1" pdb=" CA  PRO A 117 "
      ideal   model   delta  harmonic     sigma   weight residual
    -180.00 -141.36  -38.64     0      5.00e+00 4.00e-02 5.97e+01
  dihedral model="   1" pdb=" N   ASP A 118 "
           model="   1" pdb=" C   ASP A 118 "
           model="   1" pdb=" CA  ASP A 118 "
           model="   1" pdb=" CB  ASP A 118 "
      ideal   model   delta  harmonic     sigma   weight residual
     122.80  135.09  -12.29     0      2.50e+00 1.60e-01 2.42e+01
  dihedral model="   1" pdb=" CA  GLN A 100 "
           model="   1" pdb=" C   GLN A 100 "
           model="   1" pdb=" N   LYS A 101 "
           model="   1" pdb=" CA  LYS A 101 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  155.43   24.57     0      5.00e+00 4.00e-02 2.42e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.000 -    0.085: 113
       0.085 -    0.169: 46
       0.169 -    0.253: 14
       0.253 -    0.338: 1
       0.338 -    0.422: 2
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  ASP A  74 "
            model="   1" pdb=" N   ASP A  74 "
            model="   1" pdb=" C   ASP A  74 "
            model="   1" pdb=" CB  ASP A  74 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.09    0.42 2.00e-01 2.50e+01 4.45e+00
  chirality model="   1" pdb=" CA  ASP A 118 "
            model="   1" pdb=" N   ASP A 118 "
            model="   1" pdb=" C   ASP A 118 "
            model="   1" pdb=" CB  ASP A 118 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.17    0.34 2.00e-01 2.50e+01 2.93e+00
  chirality model="   1" pdb=" CA  GLU A  84 "
            model="   1" pdb=" N   GLU A  84 "
            model="   1" pdb=" C   GLU A  84 "
            model="   1" pdb=" CB  GLU A  84 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.23    0.28 2.00e-01 2.50e+01 1.98e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  PHE A  45 "   -0.147 2.00e-02 2.50e+03   9.05e-02 2.46e+02
        model="   1" pdb=" CG  PHE A  45 "    0.008 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 PHE A  45 "    0.075 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 PHE A  45 "    0.002 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 PHE A  45 "   -0.045 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 PHE A  45 "    0.028 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  PHE A  45 "   -0.013 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 PHE A  45 "    0.202 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 PHE A  45 "   -0.019 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 PHE A  45 "   -0.146 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 PHE A  45 "    0.073 2.00e-02 2.50e+03
        model="   1" pdb=" HZ  PHE A  45 "   -0.019 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A 105 "    0.092 2.00e-02 2.50e+03   4.12e-02 5.10e+01
        model="   1" pdb=" CG  TYR A 105 "   -0.032 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A 105 "   -0.015 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A 105 "   -0.035 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A 105 "   -0.001 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A 105 "    0.019 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A 105 "    0.034 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A 105 "   -0.003 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A 105 "   -0.014 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A 105 "   -0.074 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A 105 "   -0.016 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A 105 "    0.045 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  12 "    0.012 2.00e-02 2.50e+03   3.80e-02 4.33e+01
        model="   1" pdb=" CG  TYR A  12 "    0.083 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  12 "    0.009 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  12 "    0.000 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  12 "   -0.015 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  12 "   -0.006 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  12 "    0.018 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  12 "    0.055 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  12 "   -0.024 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  12 "   -0.051 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  12 "   -0.053 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  12 "   -0.027 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.78 -     2.34: 477
        2.34 -     2.91: 5092
        2.91 -     3.47: 4926
        3.47 -     4.04: 6297
        4.04 -     4.60: 9674
  Nonbonded interactions: 26466
  Sorted by model distance:
  nonbonded model="   1" pdb="HG23 VAL A  41 "
            model="   1" pdb=" H   HIS A  43 "
     model   vdw
     1.779 2.270
  nonbonded model="   1" pdb=" OE1 GLU A  16 "
            model="   1" pdb=" HZ2 LYS A  19 "
     model   vdw
     1.827 1.850
  nonbonded model="   1" pdb=" HH  TYR A 105 "
            model="   1" pdb=" O   ILE A 122 "
     model   vdw
     1.833 1.850
  nonbonded model="   1" pdb=" OE2 GLU A  24 "
            model="   1" pdb=" HZ2 LYS A  27 "
     model   vdw
     1.847 1.850
  nonbonded model="   1" pdb=" HZ1 LYS A  10 "
            model="   1" pdb=" OD1 ASP A  23 "
     model   vdw
     1.865 1.850
  ... (remaining 26461 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.
  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 93
        1.23 -     1.43: 373
        1.43 -     1.63: 665
        1.63 -     1.83: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" CD  ARG A  21 "
       model="   1" pdb=" NE  ARG A  21 "
    ideal  model  delta    sigma   weight residual
    1.458  1.508 -0.050 1.40e-02 5.10e+03 1.29e+01
  bond model="   1" pdb=" CE1 HIS A 135 "
       model="   1" pdb=" NE2 HIS A 135 "
    ideal  model  delta    sigma   weight residual
    1.321  1.356 -0.035 1.00e-02 1.00e+04 1.21e+01
  bond model="   1" pdb=" CE1 HIS A 139 "
       model="   1" pdb=" NE2 HIS A 139 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.19e+01
  bond model="   1" pdb=" CE1 HIS A  43 "
       model="   1" pdb=" NE2 HIS A  43 "
    ideal  model  delta    sigma   weight residual
    1.321  1.354 -0.033 1.00e-02 1.00e+04 1.12e+01
  bond model="   1" pdb=" CE1 HIS A 138 "
       model="   1" pdb=" NE2 HIS A 138 "
    ideal  model  delta    sigma   weight residual
    1.321  1.354 -0.033 1.00e-02 1.00e+04 1.12e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       97.23 -   104.41: 50
      104.41 -   111.59: 2431
      111.59 -   118.76: 707
      118.76 -   125.94: 858
      125.94 -   133.12: 31
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" CA  LYS A 101 "
        model="   1" pdb=" C   LYS A 101 "
        model="   1" pdb=" N   PRO A 102 "
      ideal   model   delta    sigma   weight residual
     116.90  124.95   -8.05 1.50e+00 4.44e-01 2.88e+01
  angle model="   1" pdb=" ND1 HIS A 134 "
        model="   1" pdb=" CG  HIS A 134 "
        model="   1" pdb=" CD2 HIS A 134 "
      ideal   model   delta    sigma   weight residual
     106.10  111.06   -4.96 1.00e+00 1.00e+00 2.46e+01
  angle model="   1" pdb=" N   ALA A 115 "
        model="   1" pdb=" CA  ALA A 115 "
        model="   1" pdb=" CB  ALA A 115 "
      ideal   model   delta    sigma   weight residual
     110.40  102.96    7.44 1.50e+00 4.44e-01 2.46e+01
  angle model="   1" pdb=" CA  LYS A 113 "
        model="   1" pdb=" C   LYS A 113 "
        model="   1" pdb=" N   PRO A 114 "
      ideal   model   delta    sigma   weight residual
     116.90  123.90   -7.00 1.50e+00 4.44e-01 2.18e+01
  angle model="   1" pdb=" C   SER A  98 "
        model="   1" pdb=" CA  SER A  98 "
        model="   1" pdb=" CB  SER A  98 "
      ideal   model   delta    sigma   weight residual
     110.10  101.56    8.54 1.90e+00 2.77e-01 2.02e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    11.80: 910
       11.80 -    23.59: 84
       23.59 -    35.39: 21
       35.39 -    47.18: 9
       47.18 -    58.98: 8
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" CA  LEU A  53 "
           model="   1" pdb=" C   LEU A  53 "
           model="   1" pdb=" N   PRO A  54 "
           model="   1" pdb=" CA  PRO A  54 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  156.19   23.81     0      5.00e+00 4.00e-02 2.27e+01
  dihedral model="   1" pdb=" N   VAL A  14 "
           model="   1" pdb=" C   VAL A  14 "
           model="   1" pdb=" CA  VAL A  14 "
           model="   1" pdb=" CB  VAL A  14 "
      ideal   model   delta  harmonic     sigma   weight residual
     123.40  133.69  -10.29     0      2.50e+00 1.60e-01 1.70e+01
  dihedral model="   1" pdb=" CA  ALA A  48 "
           model="   1" pdb=" C   ALA A  48 "
           model="   1" pdb=" N   GLU A  49 "
           model="   1" pdb=" CA  GLU A  49 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  160.48   19.52     0      5.00e+00 4.00e-02 1.52e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.000 -    0.060: 82
       0.060 -    0.119: 51
       0.119 -    0.179: 26
       0.179 -    0.239: 13
       0.239 -    0.298: 4
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  LYS A 101 "
            model="   1" pdb=" N   LYS A 101 "
            model="   1" pdb=" C   LYS A 101 "
            model="   1" pdb=" CB  LYS A 101 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.21    0.30 2.00e-01 2.50e+01 2.22e+00
  chirality model="   1" pdb=" CA  VAL A  14 "
            model="   1" pdb=" N   VAL A  14 "
            model="   1" pdb=" C   VAL A  14 "
            model="   1" pdb=" CB  VAL A  14 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.44    2.15    0.29 2.00e-01 2.50e+01 2.05e+00
  chirality model="   1" pdb=" CG  LEU A   3 "
            model="   1" pdb=" CB  LEU A   3 "
            model="   1" pdb=" CD1 LEU A   3 "
            model="   1" pdb=" CD2 LEU A   3 "
    both_signs  ideal   model   delta    sigma   weight residual
      False     -2.59   -2.86    0.27 2.00e-01 2.50e+01 1.88e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  91 "    0.103 2.00e-02 2.50e+03   1.04e-01 3.23e+02
        model="   1" pdb=" CG  TYR A  91 "    0.014 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  91 "   -0.063 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  91 "    0.030 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  91 "    0.022 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  91 "   -0.072 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  91 "    0.027 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  91 "    0.133 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  91 "   -0.172 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  91 "    0.109 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  91 "    0.075 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  91 "   -0.206 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A 111 "   -0.161 2.00e-02 2.50e+03   6.79e-02 1.38e+02
        model="   1" pdb=" CG  TYR A 111 "   -0.001 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A 111 "    0.032 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A 111 "    0.034 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A 111 "    0.018 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A 111 "    0.017 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A 111 "   -0.025 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A 111 "   -0.120 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A 111 "    0.065 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A 111 "    0.069 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A 111 "    0.037 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A 111 "    0.035 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  50 "   -0.038 2.00e-02 2.50e+03   3.50e-02 3.68e+01
        model="   1" pdb=" CG  TYR A  50 "    0.005 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  50 "    0.019 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  50 "   -0.007 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  50 "    0.001 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  50 "    0.027 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  50 "   -0.003 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  50 "   -0.064 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  50 "    0.039 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  50 "   -0.038 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  50 "   -0.009 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  50 "    0.070 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.71 -     2.28: 304
        2.28 -     2.86: 5069
        2.86 -     3.44: 5431
        3.44 -     4.02: 6948
        4.02 -     4.60: 10628
  Nonbonded interactions: 28380
  Sorted by model distance:
  nonbonded model="   1" pdb=" OD2 ASP A  36 "
            model="   1" pdb=" HH  TYR A  68 "
     model   vdw
     1.706 1.850
  nonbonded model="   1" pdb=" HB2 GLU A 123 "
            model="   1" pdb="HD11 LEU A 132 "
     model   vdw
     1.717 2.440
  nonbonded model="   1" pdb=" OD1 ASP A  88 "
            model="   1" pdb=" HZ2 LYS A 101 "
     model   vdw
     1.726 1.850
  nonbonded model="   1" pdb=" OD1 ASP A   7 "
            model="   1" pdb=" HZ2 LYS A  10 "
     model   vdw
     1.752 1.850
  nonbonded model="   1" pdb="HG12 VAL A 126 "
            model="   1" pdb=" H   MET A 128 "
     model   vdw
     1.790 2.270
  ... (remaining 28375 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 0.99
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 1.11 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.


  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 0.99
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 1.12 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.


  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 0.72
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 0.86 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 129
        1.23 -     1.43: 338
        1.43 -     1.63: 664
        1.63 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" CE1 HIS A 134 "
       model="   1" pdb=" NE2 HIS A 134 "
    ideal  model  delta    sigma   weight residual
    1.321  1.357 -0.036 1.00e-02 1.00e+04 1.27e+01
  bond model="   1" pdb=" CE1 HIS A 136 "
       model="   1" pdb=" NE2 HIS A 136 "
    ideal  model  delta    sigma   weight residual
    1.321  1.356 -0.035 1.00e-02 1.00e+04 1.25e+01
  bond model="   1" pdb=" CD  ARG A  21 "
       model="   1" pdb=" NE  ARG A  21 "
    ideal  model  delta    sigma   weight residual
    1.458  1.506 -0.048 1.40e-02 5.10e+03 1.17e+01
  bond model="   1" pdb=" CE1 HIS A 135 "
       model="   1" pdb=" NE2 HIS A 135 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.17e+01
  bond model="   1" pdb=" CE1 HIS A 137 "
       model="   1" pdb=" NE2 HIS A 137 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.15e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       95.37 -   102.74: 18
      102.74 -   110.12: 2134
      110.12 -   117.49: 930
      117.49 -   124.87: 923
      124.87 -   132.24: 72
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" CA  ILE A  51 "
        model="   1" pdb=" C   ILE A  51 "
        model="   1" pdb=" N   PRO A  52 "
      ideal   model   delta    sigma   weight residual
     116.90  126.79   -9.89 1.50e+00 4.44e-01 4.35e+01
  angle model="   1" pdb=" O   ILE A  51 "
        model="   1" pdb=" C   ILE A  51 "
        model="   1" pdb=" N   PRO A  52 "
      ideal   model   delta    sigma   weight residual
     123.00  114.10    8.90 1.60e+00 3.91e-01 3.10e+01
  angle model="   1" pdb=" CA  ASP A 118 "
        model="   1" pdb=" CB  ASP A 118 "
        model="   1" pdb=" CG  ASP A 118 "
      ideal   model   delta    sigma   weight residual
     112.60  117.37   -4.77 1.00e+00 1.00e+00 2.28e+01
  angle model="   1" pdb=" N   PRO A  52 "
        model="   1" pdb=" CD  PRO A  52 "
        model="   1" pdb=" CG  PRO A  52 "
      ideal   model   delta    sigma   weight residual
     103.20  110.18   -6.98 1.50e+00 4.44e-01 2.17e+01
  angle model="   1" pdb=" ND1 HIS A 134 "
        model="   1" pdb=" CG  HIS A 134 "
        model="   1" pdb=" CD2 HIS A 134 "
      ideal   model   delta    sigma   weight residual
     106.10  110.68   -4.58 1.00e+00 1.00e+00 2.09e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    14.32: 973
       14.32 -    28.64: 43
       28.64 -    42.96: 11
       42.96 -    57.28: 4
       57.28 -    71.60: 1
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" CA  ASP A 118 "
           model="   1" pdb=" C   ASP A 118 "
           model="   1" pdb=" N   LEU A 119 "
           model="   1" pdb=" CA  LEU A 119 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  138.32   41.68     0      5.00e+00 4.00e-02 6.95e+01
  dihedral model="   1" pdb=" C   ILE A  51 "
           model="   1" pdb=" N   ILE A  51 "
           model="   1" pdb=" CA  ILE A  51 "
           model="   1" pdb=" CB  ILE A  51 "
      ideal   model   delta  harmonic     sigma   weight residual
    -122.00 -142.27   20.27     0      2.50e+00 1.60e-01 6.57e+01
  dihedral model="   1" pdb=" CA  ASP A 116 "
           model="   1" pdb=" C   ASP A 116 "
           model="   1" pdb=" N   PRO A 117 "
           model="   1" pdb=" CA  PRO A 117 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  144.99   35.01     0      5.00e+00 4.00e-02 4.90e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.000 -    0.120: 150
       0.120 -    0.239: 17
       0.239 -    0.359: 4
       0.359 -    0.478: 2
       0.478 -    0.597: 3
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  PHE A  15 "
            model="   1" pdb=" N   PHE A  15 "
            model="   1" pdb=" C   PHE A  15 "
            model="   1" pdb=" CB  PHE A  15 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    1.91    0.60 2.00e-01 2.50e+01 8.92e+00
  chirality model="   1" pdb=" CA  ILE A  51 "
            model="   1" pdb=" N   ILE A  51 "
            model="   1" pdb=" C   ILE A  51 "
            model="   1" pdb=" CB  ILE A  51 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.43    1.86    0.57 2.00e-01 2.50e+01 8.15e+00
  chirality model="   1" pdb=" CA  GLU A  75 "
            model="   1" pdb=" N   GLU A  75 "
            model="   1" pdb=" C   GLU A  75 "
            model="   1" pdb=" CB  GLU A  75 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    1.99    0.52 2.00e-01 2.50e+01 6.78e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  12 "    0.037 2.00e-02 2.50e+03   3.38e-02 3.42e+01
        model="   1" pdb=" CG  TYR A  12 "    0.014 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  12 "    0.009 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  12 "   -0.023 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  12 "   -0.018 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  12 "    0.013 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  12 "    0.016 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  12 "    0.025 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  12 "    0.023 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  12 "   -0.071 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  12 "   -0.059 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  12 "    0.034 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  89 "    0.059 2.00e-02 2.50e+03   2.41e-02 1.74e+01
        model="   1" pdb=" CG  TYR A  89 "   -0.005 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  89 "   -0.018 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  89 "   -0.011 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  89 "    0.004 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  89 "   -0.003 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  89 "    0.002 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  89 "    0.017 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  89 "   -0.042 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  89 "   -0.021 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  89 "    0.020 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  89 "   -0.001 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  PHE A  45 "    0.047 2.00e-02 2.50e+03   2.35e-02 1.65e+01
        model="   1" pdb=" CG  PHE A  45 "   -0.004 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 PHE A  45 "   -0.013 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 PHE A  45 "   -0.007 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 PHE A  45 "   -0.004 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 PHE A  45 "   -0.010 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  PHE A  45 "    0.016 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 PHE A  45 "   -0.025 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 PHE A  45 "   -0.008 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 PHE A  45 "   -0.011 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 PHE A  45 "   -0.028 2.00e-02 2.50e+03
        model="   1" pdb=" HZ  PHE A  45 "    0.047 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.62 -     2.22: 136
        2.22 -     2.81: 444
  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 0.93
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 1.06 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

0
        2.81 -     3.41: 5390
        3.41 -     4.00: 6417
        4.00 -     4.60: 9834
  Nonbonded interactions: 26217
  Sorted by model distance:
  nonbonded model="   1" pdb=" OE2 GLU A  16 "
            model="   1" pdb=" HZ2 LYS A  19 "
     model   vdw
     1.619 1.850
  nonbonded model="   1" pdb=" HZ1 LYS A  10 "
            model="   1" pdb=" OD1 ASP A  23 "
     model   vdw
     1.686 1.850
  nonbonded model="   1" pdb=" OE2 GLU A  55 "
            model="   1" pdb="HH21 ARG A  58 "
     model   vdw
     1.710 1.850
  nonbonded model="   1" pdb=" OE1 GLU A  55 "
            model="   1" pdb=" HE  ARG A  58 "
     model   vdw
     1.777 1.850
  nonbonded model="   1" pdb="HD12 ILE A   4 "
            model="   1" pdb="HD23 LEU A  62 "
     model   vdw
     1.839 2.440
  ... (remaining 26212 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.
  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 133
        1.23 -     1.43: 335
        1.43 -     1.63: 663
        1.63 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" CD  ARG A  21 "
       model="   1" pdb=" NE  ARG A  21 "
    ideal  model  delta    sigma   weight residual
    1.458  1.505 -0.047 1.40e-02 5.10e+03 1.12e+01
  bond model="   1" pdb=" CE1 HIS A 139 "
       model="   1" pdb=" NE2 HIS A 139 "
    ideal  model  delta    sigma   weight residual
    1.321  1.354 -0.033 1.00e-02 1.00e+04 1.09e+01
  bond model="   1" pdb=" CE1 HIS A 134 "
       model="   1" pdb=" NE2 HIS A 134 "
    ideal  model  delta    sigma   weight residual
    1.321  1.354 -0.033 1.00e-02 1.00e+04 1.06e+01
  bond model="   1" pdb=" CE1 HIS A 136 "
       model="   1" pdb=" NE2 HIS A 136 "
    ideal  model  delta    sigma   weight residual
    1.321  1.353 -0.032 1.00e-02 1.00e+04 1.03e+01
  bond model="   1" pdb=" CE1 HIS A 135 "
       model="   1" pdb=" NE2 HIS A 135 "
    ideal  model  delta    sigma   weight residual
    1.321  1.353 -0.032 1.00e-02 1.00e+04 1.01e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       95.73 -   102.99: 28
      102.99 -   110.25: 2132
      110.25 -   117.51: 931
      117.51 -   124.77: 916
      124.77 -   132.03: 70
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" CA  ASP A  36 "
        model="   1" pdb=" CB  ASP A  36 "
        model="   1" pdb=" CG  ASP A  36 "
      ideal   model   delta    sigma   weight residual
     112.60  106.56    6.04 1.00e+00 1.00e+00 3.65e+01
  angle model="   1" pdb=" C   GLY A  87 "
        model="   1" pdb=" N   ASP A  88 "
        model="   1" pdb=" CA  ASP A  88 "
      ideal   model   delta    sigma   weight residual
     121.70  131.15   -9.45 1.80e+00 3.09e-01 2.76e+01
  angle model="   1" pdb=" CA  LEU A  53 "
        model="   1" pdb=" C   LEU A  53 "
        model="   1" pdb=" N   PRO A  54 "
      ideal   model   delta    sigma   weight residual
     116.90  124.60   -7.70 1.50e+00 4.44e-01 2.63e+01
  angle model="   1" pdb=" CA  ASP A  47 "
        model="   1" pdb=" CB  ASP A  47 "
        model="   1" pdb=" CG  ASP A  47 "
      ideal   model   delta    sigma   weight residual
     112.60  107.53    5.07 1.00e+00 1.00e+00 2.57e+01
  angle model="   1" pdb=" CD1 LEU A  61 "
        model="   1" pdb=" CG  LEU A  61 "
        model="   1" pdb=" CD2 LEU A  61 "
      ideal   model   delta    sigma   weight residual
     110.80  100.11   10.69 2.20e+00 2.07e-01 2.36e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    14.88: 966
       14.88 -    29.75: 42
       29.75 -    44.63: 17
       44.63 -    59.50: 6
       59.50 -    74.38: 1
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" C   VAL A  14 "
           model="   1" pdb=" N   VAL A  14 "
           model="   1" pdb=" CA  VAL A  14 "
           model="   1" pdb=" CB  VAL A  14 "
      ideal   model   delta  harmonic     sigma   weight residual
    -122.00 -140.94   18.94     0      2.50e+00 1.60e-01 5.74e+01
  dihedral model="   1" pdb=" N   VAL A  14 "
           model="   1" pdb=" C   VAL A  14 "
           model="   1" pdb=" CA  VAL A  14 "
           model="   1" pdb=" CB  VAL A  14 "
      ideal   model   delta  harmonic     sigma   weight residual
     123.40  139.58  -16.18     0      2.50e+00 1.60e-01 4.19e+01
  dihedral model="   1" pdb=" N   ASP A 118 "
           model="   1" pdb=" C   ASP A 118 "
           model="   1" pdb=" CA  ASP A 118 "
           model="   1" pdb=" CB  ASP A 118 "
      ideal   model   delta  harmonic     sigma   weight residual
     122.80  138.47  -15.67     0      2.50e+00 1.60e-01 3.93e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.002 -    0.129: 147
       0.129 -    0.255: 26
       0.255 -    0.382: 0
       0.382 -    0.509: 1
       0.509 -    0.636: 2
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  ASP A 118 "
            model="   1" pdb=" N   ASP A 118 "
            model="   1" pdb=" C   ASP A 118 "
            model="   1" pdb=" CB  ASP A 118 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    1.87    0.64 2.00e-01 2.50e+01 1.01e+01
  chirality model="   1" pdb=" CA  VAL A  14 "
            model="   1" pdb=" N   VAL A  14 "
            model="   1" pdb=" C   VAL A  14 "
            model="   1" pdb=" CB  VAL A  14 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.44    1.85    0.59 2.00e-01 2.50e+01 8.65e+00
  chirality model="   1" pdb=" CA  SER A  98 "
            model="   1" pdb=" N   SER A  98 "
            model="   1" pdb=" C   SER A  98 "
            model="   1" pdb=" CB  SER A  98 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.06    0.45 2.00e-01 2.50e+01 5.10e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  81 "    0.168 2.00e-02 2.50e+03   1.47e-01 6.48e+02
        model="   1" pdb=" CG  TYR A  81 "   -0.022 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  81 "    0.033 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  81 "   -0.109 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  81 "   -0.087 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  81 "    0.058 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  81 "    0.023 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  81 "    0.108 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  81 "    0.153 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  81 "   -0.276 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  81 "   -0.241 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  81 "    0.191 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  68 "   -0.216 2.00e-02 2.50e+03   1.10e-01 3.63e+02
        model="   1" pdb=" CG  TYR A  68 "   -0.045 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  68 "    0.056 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  68 "    0.023 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  68 "    0.020 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  68 "    0.052 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  68 "   -0.035 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  68 "   -0.215 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  68 "    0.147 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  68 "    0.049 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  68 "    0.033 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  68 "    0.130 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  PHE A  15 "    0.139 2.00e-02 2.50e+03   7.15e-02 1.53e+02
        model="   1" pdb=" CG  PHE A  15 "    0.042 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 PHE A  15 "   -0.040 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 PHE A  15 "   -0.019 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 PHE A  15 "   -0.000 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 PHE A  15 "   -0.024 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  PHE A  15 "    0.041 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 PHE A  15 "   -0.122 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 PHE A  15 "   -0.056 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 PHE A  15 "   -0.001 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 PHE A  15 "   -0.072 2.00e-02 2.50e+03
        model="   1" pdb=" HZ  PHE A  15 "    0.112 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.73 -     2.30: 349
        2.30 -     2.88: 5074
        2.88 -     3.45: 5164
        3.45 -     4.03: 6675
        4.03 -     4.60: 9917
  Nonbonded interactions: 27179
  Sorted by model distance:
  nonbonded model="   1" pdb=" OE2 GLU A  55 "
            model="   1" pdb="HH21 ARG A  58 "
     model   vdw
     1.727 1.850
  nonbonded model="   1" pdb="HE21 GLN A 100 "
            model="   1" pdb="HG12 VAL A 104 "
     model   vdw
     1.744 2.270
  nonbonded model="   1" pdb=" OE1 GLU A  55 "
            model="   1" pdb=" HE  ARG A  58 "
     model   vdw
     1.749 1.850
  nonbonded model="   1" pdb="HE22 GLN A 100 "
            model="   1" pdb="HG12 ILE A 108 "
     model   vdw
     1.753 2.270
  nonbonded model="   1" pdb="HG23 VAL A  41 "
            model="   1" pdb=" H   HIS A  43 "
     model   vdw
     1.788 2.270
  ... (remaining 27174 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.
  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 134
        1.23 -     1.43: 334
        1.43 -     1.63: 663
        1.63 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" C   PHE A  15 "
       model="   1" pdb=" N   GLU A  16 "
    ideal  model  delta    sigma   weight residual
    1.329  1.385 -0.056 1.40e-02 5.10e+03 1.60e+01
  bond model="   1" pdb=" CD  ARG A  21 "
       model="   1" pdb=" NE  ARG A  21 "
    ideal  model  delta    sigma   weight residual
    1.458  1.513 -0.055 1.40e-02 5.10e+03 1.52e+01
  bond model="   1" pdb=" C   PHE A  15 "
       model="   1" pdb=" O   PHE A  15 "
    ideal  model  delta    sigma   weight residual
    1.231  1.155  0.076 2.00e-02 2.50e+03 1.46e+01
  bond model="   1" pdb=" CE1 HIS A 134 "
       model="   1" pdb=" NE2 HIS A 134 "
    ideal  model  delta    sigma   weight residual
    1.321  1.357 -0.036 1.00e-02 1.00e+04 1.33e+01
  bond model="   1" pdb=" CE1 HIS A 139 "
       model="   1" pdb=" NE2 HIS A 139 "
    ideal  model  delta    sigma   weight residual
    1.321  1.357 -0.036 1.00e-02 1.00e+04 1.32e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       96.93 -   104.08: 40
      104.08 -   111.22: 2393
      111.22 -   118.37: 728
      118.37 -   125.52: 863
      125.52 -   132.67: 53
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" CB  LYS A  79 "
        model="   1" pdb=" CG  LYS A  79 "
        model="   1" pdb=" CD  LYS A  79 "
      ideal   model   delta    sigma   weight residual
     111.30  129.85  -18.55 2.30e+00 1.89e-01 6.51e+01
  angle model="   1" pdb=" CA  ASP A 116 "
        model="   1" pdb=" C   ASP A 116 "
        model="   1" pdb=" N   PRO A 117 "
      ideal   model   delta    sigma   weight residual
     116.90  128.10  -11.20 1.50e+00 4.44e-01 5.58e+01
  angle model="   1" pdb=" CA  PHE A  15 "
        model="   1" pdb=" CB  PHE A  15 "
        model="   1" pdb=" CG  PHE A  15 "
      ideal   model   delta    sigma   weight residual
     113.80  107.95    5.85 1.00e+00 1.00e+00 3.42e+01
  angle model="   1" pdb=" CA  ASP A  29 "
        model="   1" pdb=" CB  ASP A  29 "
        model="   1" pdb=" CG  ASP A  29 "
      ideal   model   delta    sigma   weight residual
     112.60  118.25   -5.65 1.00e+00 1.00e+00 3.19e+01
  angle model="   1" pdb=" CA  ILE A  51 "
        model="   1" pdb=" C   ILE A  51 "
        model="   1" pdb=" N   PRO A  52 "
      ideal   model   delta    sigma   weight residual
     116.90  124.29   -7.39 1.50e+00 4.44e-01 2.43e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    13.53: 961
       13.53 -    27.05: 50
       27.05 -    40.58: 17
       40.58 -    54.11: 1
       54.11 -    67.63: 3
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" CA  HIS A 138 "
           model="   1" pdb=" C   HIS A 138 "
           model="   1" pdb=" N   HIS A 139 "
           model="   1" pdb=" CA  HIS A 139 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  141.10   38.90     0      5.00e+00 4.00e-02 6.05e+01
  dihedral model="   1" pdb=" CA  ASP A  95 "
           model="   1" pdb=" C   ASP A  95 "
           model="   1" pdb=" N   GLY A  96 "
           model="   1" pdb=" CA  GLY A  96 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  145.24   34.76     0      5.00e+00 4.00e-02 4.83e+01
  dihedral model="   1" pdb=" CA  ILE A 122 "
           model="   1" pdb=" C   ILE A 122 "
           model="   1" pdb=" N   GLU A 123 "
           model="   1" pdb=" CA  GLU A 123 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  150.91   29.09     0      5.00e+00 4.00e-02 3.38e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.001 -    0.073: 108
       0.073 -    0.145: 44
       0.145 -    0.217: 15
       0.217 -    0.289: 6
       0.289 -    0.361: 3
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CB  THR A  56 "
            model="   1" pdb=" CA  THR A  56 "
            model="   1" pdb=" OG1 THR A  56 "
            model="   1" pdb=" CG2 THR A  56 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.55    2.19    0.36 2.00e-01 2.50e+01 3.25e+00
  chirality model="   1" pdb=" CG  LEU A   3 "
            model="   1" pdb=" CB  LEU A   3 "
            model="   1" pdb=" CD1 LEU A   3 "
            model="   1" pdb=" CD2 LEU A   3 "
    both_signs  ideal   model   delta    sigma   weight residual
      False     -2.59   -2.94    0.35 2.00e-01 2.50e+01 3.10e+00
  chirality model="   1" pdb=" CA  ALA A 115 "
            model="   1" pdb=" N   ALA A 115 "
            model="   1" pdb=" C   ALA A 115 "
            model="   1" pdb=" CB  ALA A 115 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.48    2.17    0.31 2.00e-01 2.50e+01 2.43e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A 105 "    0.036 2.00e-02 2.50e+03   5.13e-02 7.91e+01
        model="   1" pdb=" CG  TYR A 105 "   -0.027 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A 105 "    0.018 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A 105 "   -0.033 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A 105 "   -0.036 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A 105 "    0.015 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A 105 "   -0.006 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A 105 "    0.048 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A 105 "    0.085 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A 105 "   -0.069 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A 105 "   -0.092 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A 105 "    0.061 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  PHE A  67 "   -0.073 2.00e-02 2.50e+03   4.17e-02 5.22e+01
        model="   1" pdb=" CG  PHE A  67 "   -0.018 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 PHE A  67 "    0.029 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 PHE A  67 "    0.003 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 PHE A  67 "   -0.009 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 PHE A  67 "    0.018 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  PHE A  67 "   -0.018 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 PHE A  67 "    0.087 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 PHE A  67 "    0.007 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 PHE A  67 "   -0.028 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 PHE A  67 "    0.051 2.00e-02 2.50e+03
        model="   1" pdb=" HZ  PHE A  67 "   -0.049 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  PHE A  45 "   -0.051 2.00e-02 2.50e+03   4.05e-02 4.92e+01
        model="   1" pdb=" CG  PHE A  45 "    0.027 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 PHE A  45 "   -0.002 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 PHE A  45 "    0.033 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 PHE A  45 "    0.009 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 PHE A  45 "   -0.026 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  PHE A  45 "    0.005 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 PHE A  45 "   -0.027 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 PHE A  45 "    0.076 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 PHE A  45 "    0.019 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 PHE A  45 "   -0.085 2.00e-02 2.50e+03
        model="   1" pdb=" HZ  PHE A  45 "    0.023 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.67 -     2.26: 221
        2.26 -     2.84: 4683
        2.84 -     3.43: 5410
        3.43 -     4.01: 6619
        4.01 -     4.60: 10060
  Nonbonded interactions: 26993
  Sorted by model distance:
  nonbonded model="   1" pdb="HG23 VAL A  41 "
            model="   1" pdb=" H   HIS A  43 "
     model   vdw
     1.671 2.270
  nonbonded model="   1" pdb=" OE2 GLU A  55 "
            model="   1" pdb="HH21 ARG A  58 "
     model   vdw
     1.702 1.850
  nonbonded model="   1" pdb=" OE1 GLU A  55 "
            model="   1" pdb=" HE  ARG A  58 "
     model   vdw
     1.736 1.850
  nonbonded model="   1" pdb=" OE2 GLU A  16 "
            model="   1" pdb=" HZ2 LYS A  19 "
     model   vdw
     1.781 1.850
  nonbonded model="   1" pdb=" HZ1 LYS A  63 "
            model="   1" pdb=" OD2 ASP A 103 "
     model   vdw
     1.793 1.850
  ... (remaining 26988 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 1.01
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 1.15 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.


  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 0.98
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 1.11 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 87
        1.23 -     1.43: 378
        1.43 -     1.63: 666
        1.63 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" CE1 HIS A  43 "
       model="   1" pdb=" NE2 HIS A  43 "
    ideal  model  delta    sigma   weight residual
    1.321  1.357 -0.036 1.00e-02 1.00e+04 1.33e+01
  bond model="   1" pdb=" CE1 HIS A 136 "
       model="   1" pdb=" NE2 HIS A 136 "
    ideal  model  delta    sigma   weight residual
    1.321  1.357 -0.036 1.00e-02 1.00e+04 1.31e+01
  bond model="   1" pdb=" CE1 HIS A 135 "
       model="   1" pdb=" NE2 HIS A 135 "
    ideal  model  delta    sigma   weight residual
    1.321  1.357 -0.036 1.00e-02 1.00e+04 1.31e+01
  bond model="   1" pdb=" CE1 HIS A 137 "
       model="   1" pdb=" NE2 HIS A 137 "
    ideal  model  delta    sigma   weight residual
    1.321  1.357 -0.036 1.00e-02 1.00e+04 1.29e+01
  bond model="   1" pdb=" C   LYS A 113 "
       model="   1" pdb=" O   LYS A 113 "
    ideal  model  delta    sigma   weight residual
    1.231  1.160  0.071 2.00e-02 2.50e+03 1.25e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       96.75 -   103.85: 29
      103.85 -   110.94: 2293
      110.94 -   118.03: 813
      118.03 -   125.12: 887
      125.12 -   132.21: 55
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" CA  ASP A 116 "
        model="   1" pdb=" C   ASP A 116 "
        model="   1" pdb=" N   PRO A 117 "
      ideal   model   delta    sigma   weight residual
     116.90  125.76   -8.86 1.50e+00 4.44e-01 3.49e+01
  angle model="   1" pdb=" CA  ASP A 116 "
        model="   1" pdb=" CB  ASP A 116 "
        model="   1" pdb=" CG  ASP A 116 "
      ideal   model   delta    sigma   weight residual
     112.60  117.33   -4.73 1.00e+00 1.00e+00 2.24e+01
  angle model="   1" pdb=" C   ILE A  77 "
        model="   1" pdb=" N   ILE A  78 "
        model="   1" pdb=" CA  ILE A  78 "
      ideal   model   delta    sigma   weight residual
     121.70  130.05   -8.35 1.80e+00 3.09e-01 2.15e+01
  angle model="   1" pdb=" CA  ARG A  21 "
        model="   1" pdb=" C   ARG A  21 "
        model="   1" pdb=" N   PRO A  22 "
      ideal   model   delta    sigma   weight residual
     116.90  123.66   -6.76 1.50e+00 4.44e-01 2.03e+01
  angle model="   1" pdb=" ND1 HIS A 138 "
        model="   1" pdb=" CG  HIS A 138 "
        model="   1" pdb=" CD2 HIS A 138 "
      ideal   model   delta    sigma   weight residual
     106.10  110.54   -4.44 1.00e+00 1.00e+00 1.97e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    12.70: 963
       12.70 -    25.40: 53
       25.40 -    38.10: 8
       38.10 -    50.79: 6
       50.79 -    63.49: 2
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" CA  ILE A 122 "
           model="   1" pdb=" C   ILE A 122 "
           model="   1" pdb=" N   GLU A 123 "
           model="   1" pdb=" CA  GLU A 123 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  154.06   25.94     0      5.00e+00 4.00e-02 2.69e+01
  dihedral model="   1" pdb=" N   LYS A 101 "
           model="   1" pdb=" C   LYS A 101 "
           model="   1" pdb=" CA  LYS A 101 "
           model="   1" pdb=" CB  LYS A 101 "
      ideal   model   delta  harmonic     sigma   weight residual
     122.80  134.43  -11.63     0      2.50e+00 1.60e-01 2.16e+01
  dihedral model="   1" pdb=" CA  GLY A 121 "
           model="   1" pdb=" C   GLY A 121 "
           model="   1" pdb=" N   ILE A 122 "
           model="   1" pdb=" CA  ILE A 122 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  158.13   21.87     0      5.00e+00 4.00e-02 1.91e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.000 -    0.080: 110
       0.080 -    0.160: 45
       0.160 -    0.241: 13
       0.241 -    0.321: 6
       0.321 -    0.401: 2
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  LYS A 101 "
            model="   1" pdb=" N   LYS A 101 "
            model="   1" pdb=" C   LYS A 101 "
            model="   1" pdb=" CB  LYS A 101 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.11    0.40 2.00e-01 2.50e+01 4.02e+00
  chirality model="   1" pdb=" CA  TYR A  50 "
            model="   1" pdb=" N   TYR A  50 "
            model="   1" pdb=" C   TYR A  50 "
            model="   1" pdb=" CB  TYR A  50 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.17    0.34 2.00e-01 2.50e+01 2.91e+00
  chirality model="   1" pdb=" CA  LEU A   9 "
            model="   1" pdb=" N   LEU A   9 "
            model="   1" pdb=" C   LEU A   9 "
            model="   1" pdb=" CB  LEU A   9 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.23    0.28 2.00e-01 2.50e+01 1.97e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  PHE A  45 "    0.010 2.00e-02 2.50e+03   6.13e-02 1.13e+02
        model="   1" pdb=" CG  PHE A  45 "   -0.090 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 PHE A  45 "   -0.022 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 PHE A  45 "   -0.004 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 PHE A  45 "    0.034 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 PHE A  45 "    0.015 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  PHE A  45 "   -0.037 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 PHE A  45 "   -0.013 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 PHE A  45 "    0.042 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 PHE A  45 "    0.118 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 PHE A  45 "    0.063 2.00e-02 2.50e+03
        model="   1" pdb=" HZ  PHE A  45 "   -0.117 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  PHE A  67 "   -0.085 2.00e-02 2.50e+03   4.13e-02 5.13e+01
        model="   1" pdb=" CG  PHE A  67 "    0.022 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 PHE A  67 "    0.011 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 PHE A  67 "    0.028 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 PHE A  67 "    0.018 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 PHE A  67 "    0.002 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  PHE A  67 "   -0.027 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 PHE A  67 "   -0.001 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 PHE A  67 "    0.049 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 PHE A  67 "    0.052 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 PHE A  67 "    0.004 2.00e-02 2.50e+03
        model="   1" pdb=" HZ  PHE A  67 "   -0.075 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A 111 "   -0.091 2.00e-02 2.50e+03   3.98e-02 4.75e+01
        model="   1" pdb=" CG  TYR A 111 "    0.009 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A 111 "    0.032 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A 111 "    0.011 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A 111 "   -0.008 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A 111 "    0.013 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A 111 "   -0.017 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A 111 "   -0.039 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A 111 "    0.073 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A 111 "    0.012 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A 111 "   -0.027 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A 111 "    0.033 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.71 -     2.29: 326
        2.29 -     2.87: 5064
        2.87 -     3.45: 5109
        3.45 -     4.02: 6631
        4.02 -     4.60: 9969
  Nonbonded interactions: 27099
  Sorted by model distance:
  nonbonded model="   1" pdb=" HZ1 LYS A  10 "
            model="   1" pdb=" OD1 ASP A  23 "
     model   vdw
     1.714 1.850
  nonbonded model="   1" pdb="HD12 ILE A   4 "
            model="   1" pdb="HD23 LEU A  62 "
     model   vdw
     1.726 2.440
  nonbonded model="   1" pdb=" HE1 PHE A  45 "
            model="   1" pdb=" HH  TYR A 111 "
     model   vdw
     1.764 2.100
  nonbonded model="   1" pdb="HD22 LEU A   2 "
            model="   1" pdb="HG22 ILE A  30 "
     model   vdw
     1.815 2.440
  nonbonded model="   1" pdb=" HA  LEU A   9 "
            model="   1" pdb="HD22 LEU A  62 "
     model   vdw
     1.818 2.440
  ... (remaining 27094 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.
  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 118
        1.23 -     1.43: 350
        1.43 -     1.63: 663
        1.63 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" CD  ARG A 127 "
       model="   1" pdb=" NE  ARG A 127 "
    ideal  model  delta    sigma   weight residual
    1.458  1.506 -0.048 1.40e-02 5.10e+03 1.17e+01
  bond model="   1" pdb=" CA  MET A   1 "
       model="   1" pdb=" C   MET A   1 "
    ideal  model  delta    sigma   weight residual
    1.525  1.455  0.070 2.10e-02 2.27e+03 1.11e+01
  bond model="   1" pdb=" CE1 HIS A 139 "
       model="   1" pdb=" NE2 HIS A 139 "
    ideal  model  delta    sigma   weight residual
    1.321  1.354 -0.033 1.00e-02 1.00e+04 1.08e+01
  bond model="   1" pdb=" CE1 HIS A 137 "
       model="   1" pdb=" NE2 HIS A 137 "
    ideal  model  delta    sigma   weight residual
    1.321  1.353 -0.032 1.00e-02 1.00e+04 1.05e+01
  bond model="   1" pdb=" CE1 HIS A 135 "
       model="   1" pdb=" NE2 HIS A 135 "
    ideal  model  delta    sigma   weight residual
    1.321  1.353 -0.032 1.00e-02 1.00e+04 1.04e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       94.82 -   102.39: 15
      102.39 -   109.96: 2067
      109.96 -   117.53: 1013
      117.53 -   125.11: 928
      125.11 -   132.68: 54
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" CA  PHE A  45 "
        model="   1" pdb=" CB  PHE A  45 "
        model="   1" pdb=" CG  PHE A  45 "
      ideal   model   delta    sigma   weight residual
     113.80  105.38    8.42 1.00e+00 1.00e+00 7.09e+01
  angle model="   1" pdb=" CA  ASP A 116 "
        model="   1" pdb=" C   ASP A 116 "
        model="   1" pdb=" N   PRO A 117 "
      ideal   model   delta    sigma   weight residual
     116.90  128.04  -11.14 1.50e+00 4.44e-01 5.51e+01
  angle model="   1" pdb=" N   THR A   5 "
        model="   1" pdb=" CA  THR A   5 "
        model="   1" pdb=" CB  THR A   5 "
      ideal   model   delta    sigma   weight residual
     111.50  119.95   -8.45 1.70e+00 3.46e-01 2.47e+01
  angle model="   1" pdb=" CA  ILE A  51 "
        model="   1" pdb=" C   ILE A  51 "
        model="   1" pdb=" N   PRO A  52 "
      ideal   model   delta    sigma   weight residual
     116.90  124.21   -7.31 1.50e+00 4.44e-01 2.37e+01
  angle model="   1" pdb=" CA  LYS A 113 "
        model="   1" pdb=" C   LYS A 113 "
        model="   1" pdb=" N   PRO A 114 "
      ideal   model   delta    sigma   weight residual
     116.90  124.07   -7.17 1.50e+00 4.44e-01 2.29e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    15.44: 979
       15.44 -    30.88: 36
       30.88 -    46.31: 9
       46.31 -    61.75: 6
       61.75 -    77.19: 2
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" CA  ARG A  21 "
           model="   1" pdb=" C   ARG A  21 "
           model="   1" pdb=" N   PRO A  22 "
           model="   1" pdb=" CA  PRO A  22 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  155.32   24.68     0      5.00e+00 4.00e-02 2.44e+01
  dihedral model="   1" pdb=" CA  LYS A  85 "
           model="   1" pdb=" C   LYS A  85 "
           model="   1" pdb=" N   ILE A  86 "
           model="   1" pdb=" CA  ILE A  86 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  159.86   20.14     0      5.00e+00 4.00e-02 1.62e+01
  dihedral model="   1" pdb=" CA  PHE A  45 "
           model="   1" pdb=" C   PHE A  45 "
           model="   1" pdb=" N   SER A  46 "
           model="   1" pdb=" CA  SER A  46 "
      ideal   model   delta  harmonic     sigma   weight residual
    -180.00 -161.37  -18.63     0      5.00e+00 4.00e-02 1.39e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.001 -    0.056: 87
       0.056 -    0.111: 52
       0.111 -    0.165: 18
       0.165 -    0.220: 14
       0.220 -    0.275: 5
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  PHE A  45 "
            model="   1" pdb=" N   PHE A  45 "
            model="   1" pdb=" C   PHE A  45 "
            model="   1" pdb=" CB  PHE A  45 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.24    0.27 2.00e-01 2.50e+01 1.89e+00
  chirality model="   1" pdb=" CA  THR A   5 "
            model="   1" pdb=" N   THR A   5 "
            model="   1" pdb=" C   THR A   5 "
            model="   1" pdb=" CB  THR A   5 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.53    2.25    0.27 2.00e-01 2.50e+01 1.85e+00
  chirality model="   1" pdb=" CA  PRO A  54 "
            model="   1" pdb=" N   PRO A  54 "
            model="   1" pdb=" C   PRO A  54 "
            model="   1" pdb=" CB  PRO A  54 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.72    2.45    0.27 2.00e-01 2.50e+01 1.81e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  81 "   -0.105 2.00e-02 2.50e+03   6.31e-02 1.19e+02
        model="   1" pdb=" CG  TYR A  81 "    0.059 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  81 "    0.016 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  81 "    0.052 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  81 "   -0.001 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  81 "   -0.037 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  81 "   -0.001 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  81 "    0.047 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  81 "   -0.002 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  81 "    0.108 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  81 "   -0.013 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  81 "   -0.122 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A 105 "    0.016 2.00e-02 2.50e+03   4.93e-02 7.30e+01
        model="   1" pdb=" CG  TYR A 105 "    0.045 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A 105 "   -0.026 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A 105 "    0.022 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A 105 "    0.030 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A 105 "   -0.019 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A 105 "    0.026 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A 105 "   -0.008 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A 105 "   -0.111 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A 105 "    0.033 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A 105 "    0.068 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A 105 "   -0.076 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  68 "   -0.048 2.00e-02 2.50e+03   4.21e-02 5.32e+01
        model="   1" pdb=" CG  TYR A  68 "   -0.049 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  68 "    0.011 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  68 "   -0.000 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  68 "    0.005 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  68 "    0.016 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  68 "   -0.047 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  68 "   -0.068 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  68 "    0.053 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  68 "    0.021 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  68 "    0.038 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  68 "    0.068 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.74 -     2.31: 374
        2.31 -     2.88: 5149
        2.88 -     3.46: 5097
        3.46 -     4.03: 6508
        4.03 -     4.60: 9884
  Nonbonded interactions: 27012
  Sorted by model distance:
  nonbonded model="   1" pdb="HH21 ARG A  21 "
            model="   1" pdb=" HB1 ALA A  69 "
     model   vdw
     1.742 2.270
  nonbonded model="   1" pdb=" H3  MET A   1 "
            model="   1" pdb=" O   SER A  46 "
     model   vdw
     1.759 1.850
  nonbonded model="   1" pdb=" OE2 GLU A  16 "
            model="   1" pdb=" HZ2 LYS A  19 "
     model   vdw
     1.766 1.850
  nonbonded model="   1" pdb=" OD2 ASP A  36 "
            model="   1" pdb=" HZ2 LYS A  40 "
     model   vdw
     1.793 1.850
  nonbonded model="   1" pdb=" HZ3 LYS A  85 "
            model="   1" pdb=" OE1 GLN A 100 "
     model   vdw
     1.843 1.850
  ... (remaining 27007 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 1.09
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 1.21 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 135
        1.23 -     1.43: 338
        1.43 -     1.63: 658
        1.63 -     1.83: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" CE1 HIS A 139 "
       model="   1" pdb=" NE2 HIS A 139 "
    ideal  model  delta    sigma   weight residual
    1.321  1.359 -0.038 1.00e-02 1.00e+04 1.42e+01
  bond model="   1" pdb=" CE1 HIS A  43 "
       model="   1" pdb=" NE2 HIS A  43 "
    ideal  model  delta    sigma   weight residual
    1.321  1.357 -0.036 1.00e-02 1.00e+04 1.33e+01
  bond model="   1" pdb=" CE1 HIS A 134 "
       model="   1" pdb=" NE2 HIS A 134 "
    ideal  model  delta    sigma   weight residual
    1.321  1.356 -0.035 1.00e-02 1.00e+04 1.26e+01
  bond model="   1" pdb=" CE1 HIS A 138 "
       model="   1" pdb=" NE2 HIS A 138 "
    ideal  model  delta    sigma   weight residual
    1.321  1.356 -0.035 1.00e-02 1.00e+04 1.24e+01
  bond model="   1" pdb=" CD  ARG A 129 "
       model="   1" pdb=" NE  ARG A 129 "
    ideal  model  delta    sigma   weight residual
    1.458  1.505 -0.047 1.40e-02 5.10e+03 1.13e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       94.32 -   102.84: 31
      102.84 -   111.36: 2407
      111.36 -   119.88: 881
      119.88 -   128.41: 743
      128.41 -   136.93: 15
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" CA  ASP A 116 "
        model="   1" pdb=" C   ASP A 116 "
        model="   1" pdb=" N   PRO A 117 "
      ideal   model   delta    sigma   weight residual
     116.90  130.42  -13.52 1.50e+00 4.44e-01 8.12e+01
  angle model="   1" pdb=" C   HIS A 135 "
        model="   1" pdb=" N   HIS A 136 "
        model="   1" pdb=" CA  HIS A 136 "
      ideal   model   delta    sigma   weight residual
     121.70  136.93  -15.23 1.80e+00 3.09e-01 7.16e+01
  angle model="   1" pdb=" C   GLU A 133 "
        model="   1" pdb=" N   HIS A 134 "
        model="   1" pdb=" CA  HIS A 134 "
      ideal   model   delta    sigma   weight residual
     121.70  135.06  -13.36 1.80e+00 3.09e-01 5.51e+01
  angle model="   1" pdb=" N   PRO A 114 "
        model="   1" pdb=" CA  PRO A 114 "
        model="   1" pdb=" C   PRO A 114 "
      ideal   model   delta    sigma   weight residual
     112.10  129.56  -17.46 2.50e+00 1.60e-01 4.88e+01
  angle model="   1" pdb=" CA  HIS A 138 "
        model="   1" pdb=" CB  HIS A 138 "
        model="   1" pdb=" CG  HIS A 138 "
      ideal   model   delta    sigma   weight residual
     113.80  120.72   -6.92 1.00e+00 1.00e+00 4.79e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    15.66: 974
       15.66 -    31.32: 39
       31.32 -    46.98: 13
       46.98 -    62.64: 4
       62.64 -    78.30: 2
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" N   HIS A 135 "
           model="   1" pdb=" C   HIS A 135 "
           model="   1" pdb=" CA  HIS A 135 "
           model="   1" pdb=" CB  HIS A 135 "
      ideal   model   delta  harmonic     sigma   weight residual
     122.80  138.05  -15.25     0      2.50e+00 1.60e-01 3.72e+01
  dihedral model="   1" pdb=" CA  PRO A 114 "
           model="   1" pdb=" C   PRO A 114 "
           model="   1" pdb=" N   ALA A 115 "
           model="   1" pdb=" CA  ALA A 115 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  149.81   30.19     0      5.00e+00 4.00e-02 3.65e+01
  dihedral model="   1" pdb=" CA  LYS A 113 "
           model="   1" pdb=" C   LYS A 113 "
           model="   1" pdb=" N   PRO A 114 "
           model="   1" pdb=" CA  PRO A 114 "
      ideal   model   delta  harmonic     sigma   weight residual
    -180.00 -150.34  -29.66     0      5.00e+00 4.00e-02 3.52e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.000 -    0.119: 134
       0.119 -    0.237: 30
       0.237 -    0.355: 7
       0.355 -    0.473: 2
      
  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 0.95
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 1.08 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

 0.473 -    0.591: 3
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  PRO A 114 "
            model="   1" pdb=" N   PRO A 114 "
            model="   1" pdb=" C   PRO A 114 "
            model="   1" pdb=" CB  PRO A 114 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.72    2.13    0.59 2.00e-01 2.50e+01 8.75e+00
  chirality model="   1" pdb=" CA  HIS A 135 "
            model="   1" pdb=" N   HIS A 135 "
            model="   1" pdb=" C   HIS A 135 "
            model="   1" pdb=" CB  HIS A 135 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    1.96    0.55 2.00e-01 2.50e+01 7.63e+00
  chirality model="   1" pdb=" CA  HIS A 137 "
            model="   1" pdb=" N   HIS A 137 "
            model="   1" pdb=" C   HIS A 137 "
            model="   1" pdb=" CB  HIS A 137 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.03    0.48 2.00e-01 2.50e+01 5.75e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  HIS A 134 "    0.181 2.00e-02 2.50e+03   1.08e-01 2.32e+02
        model="   1" pdb=" CG  HIS A 134 "   -0.166 2.00e-02 2.50e+03
        model="   1" pdb=" ND1 HIS A 134 "   -0.139 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 HIS A 134 "   -0.030 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 HIS A 134 "    0.015 2.00e-02 2.50e+03
        model="   1" pdb=" NE2 HIS A 134 "    0.082 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 HIS A 134 "   -0.015 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 HIS A 134 "    0.072 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  HIS A 136 "    0.142 2.00e-02 2.50e+03   8.49e-02 1.44e+02
        model="   1" pdb=" CG  HIS A 136 "   -0.134 2.00e-02 2.50e+03
        model="   1" pdb=" ND1 HIS A 136 "   -0.107 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 HIS A 136 "   -0.024 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 HIS A 136 "    0.013 2.00e-02 2.50e+03
        model="   1" pdb=" NE2 HIS A 136 "    0.062 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 HIS A 136 "   -0.010 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 HIS A 136 "    0.059 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  HIS A 138 "    0.135 2.00e-02 2.50e+03   8.01e-02 1.28e+02
        model="   1" pdb=" CG  HIS A 138 "   -0.122 2.00e-02 2.50e+03
        model="   1" pdb=" ND1 HIS A 138 "   -0.104 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 HIS A 138 "   -0.024 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 HIS A 138 "    0.012 2.00e-02 2.50e+03
        model="   1" pdb=" NE2 HIS A 138 "    0.057 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 HIS A 138 "   -0.014 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 HIS A 138 "    0.058 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.63 -     2.22: 175
        2.22 -     2.82: 4548
        2.82 -     3.41: 5580
        3.41 -     4.01: 6785
        4.01 -     4.60: 10269
  Nonbonded interactions: 27357
  Sorted by model distance:
  nonbonded model="   1" pdb=" HB3 SER A  13 "
            model="   1" pdb=" H   PHE A  15 "
     model   vdw
     1.627 2.270
  nonbonded model="   1" pdb=" HH  TYR A  68 "
            model="   1" pdb=" OE2 GLU A  75 "
     model   vdw
     1.798 1.850
  nonbonded model="   1" pdb=" HZ  PHE A  15 "
            model="   1" pdb=" HB1 ALA A  69 "
     model   vdw
     1.857 2.270
  nonbonded model="   1" pdb=" HB3 LEU A   3 "
            model="   1" pdb="HD23 LEU A  53 "
     model   vdw
     1.886 2.440
  nonbonded model="   1" pdb=" HA  HIS A 137 "
            model="   1" pdb=" HB2 HIS A 138 "
     model   vdw
     1.905 2.440
  ... (remaining 27352 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 0.97
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 1.10 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.


  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 0.92
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 1.05 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 107
        1.23 -     1.43: 358
        1.43 -     1.63: 666
        1.63 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" CE1 HIS A  43 "
       model="   1" pdb=" NE2 HIS A  43 "
    ideal  model  delta    sigma   weight residual
    1.321  1.357 -0.036 1.00e-02 1.00e+04 1.29e+01
  bond model="   1" pdb=" CE1 HIS A 138 "
       model="   1" pdb=" NE2 HIS A 138 "
    ideal  model  delta    sigma   weight residual
    1.321  1.356 -0.035 1.00e-02 1.00e+04 1.23e+01
  bond model="   1" pdb=" CE1 HIS A 139 "
       model="   1" pdb=" NE2 HIS A 139 "
    ideal  model  delta    sigma   weight residual
    1.321  1.356 -0.035 1.00e-02 1.00e+04 1.23e+01
  bond model="   1" pdb=" CE1 HIS A 135 "
       model="   1" pdb=" NE2 HIS A 135 "
    ideal  model  delta    sigma   weight residual
    1.321  1.356 -0.035 1.00e-02 1.00e+04 1.20e+01
  bond model="   1" pdb=" CD  ARG A  21 "
       model="   1" pdb=" NE  ARG A  21 "
    ideal  model  delta    sigma   weight residual
    1.458  1.504 -0.046 1.40e-02 5.10e+03 1.09e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       95.94 -   104.41: 84
      104.41 -   112.88: 2564
      112.88 -   121.34: 956
      121.34 -   129.81: 471
      129.81 -   138.27: 2
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" C   HIS A 137 "
        model="   1" pdb=" N   HIS A 138 "
        model="   1" pdb=" CA  HIS A 138 "
      ideal   model   delta    sigma   weight residual
     121.70  138.27  -16.57 1.80e+00 3.09e-01 8.48e+01
  angle model="   1" pdb=" CA  ILE A  51 "
        model="   1" pdb=" C   ILE A  51 "
        model="   1" pdb=" N   PRO A  52 "
      ideal   model   delta    sigma   weight residual
     116.90  128.47  -11.57 1.50e+00 4.44e-01 5.95e+01
  angle model="   1" pdb=" N   HIS A 137 "
        model="   1" pdb=" CA  HIS A 137 "
        model="   1" pdb=" CB  HIS A 137 "
      ideal   model   delta    sigma   weight residual
     110.50  119.85   -9.35 1.70e+00 3.46e-01 3.02e+01
  angle model="   1" pdb=" C   SER A  90 "
        model="   1" pdb=" CA  SER A  90 "
        model="   1" pdb=" CB  SER A  90 "
      ideal   model   delta    sigma   weight residual
     110.10  100.00   10.10 1.90e+00 2.77e-01 2.83e+01
  angle model="   1" pdb=" CA  HIS A 137 "
        model="   1" pdb=" CB  HIS A 137 "
        model="   1" pdb=" CG  HIS A 137 "
      ideal   model   delta    sigma   weight residual
     113.80  119.01   -5.21 1.00e+00 1.00e+00 2.71e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    12.32: 926
       12.32 -    24.64: 78
       24.64 -    36.96: 15
       36.96 -    49.28: 9
       49.28 -    61.60: 4
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" CA  VAL A 126 "
           model="   1" pdb=" C   VAL A 126 "
           model="   1" pdb=" N   ARG A 127 "
           model="   1" pdb=" CA  ARG A 127 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  138.62   41.38     0      5.00e+00 4.00e-02 6.85e+01
  dihedral model="   1" pdb=" CA  ILE A 131 "
           model="   1" pdb=" C   ILE A 131 "
           model="   1" pdb=" N   LEU A 132 "
           model="   1" pdb=" CA  LEU A 132 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  139.08   40.92     0      5.00e+00 4.00e-02 6.70e+01
  dihedral model="   1" pdb=" CA  LEU A  53 "
           model="   1" pdb=" C   LEU A  53 "
           model="   1" pdb=" N   PRO A  54 "
           model="   1" pdb=" CA  PRO A  54 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  140.03   39.97     0      5.00e+00 4.00e-02 6.39e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.000 -    0.091: 117
       0.091 -    0.181: 38
       0.181 -    0.272: 11
       0.272 -    0.363: 6
       0.363 -    0.453: 4
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  VAL A  14 "
            model="   1" pdb=" N   VAL A  14 "
            model="   1" pdb=" C   VAL A  14 "
            model="   1" pdb=" CB  VAL A  14 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.44    1.99    0.45 2.00e-01 2.50e+01 5.14e+00
  chirality model="   1" pdb=" CA  SER A  76 "
            model="   1" pdb=" N   SER A  76 "
            model="   1" pdb=" C   SER A  76 "
            model="   1" pdb=" CB  SER A  76 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.11    0.40 2.00e-01 2.50e+01 4.09e+00
  chirality model="   1" pdb=" CA  THR A  82 "
            model="   1" pdb=" N   THR A  82 "
            model="   1" pdb=" C   THR A  82 "
            model="   1" pdb=" CB  THR A  82 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.53    2.13    0.39 2.00e-01 2.50e+01 3.86e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  91 "   -0.381 2.00e-02 2.50e+03   1.65e-01 8.12e+02
        model="   1" pdb=" CG  TYR A  91 "    0.018 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  91 "    0.056 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  91 "    0.102 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  91 "    0.072 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  91 "    0.026 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  91 "   -0.016 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  91 "   -0.302 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  91 "    0.072 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  91 "    0.209 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  91 "    0.140 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  91 "    0.003 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A 111 "   -0.264 2.00e-02 2.50e+03   1.17e-01 4.14e+02
        model="   1" pdb=" CG  TYR A 111 "    0.076 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A 111 "    0.104 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A 111 "    0.040 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A 111 "   -0.044 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A 111 "    0.014 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A 111 "   -0.031 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A 111 "   -0.019 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A 111 "    0.219 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A 111 "    0.034 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A 111 "   -0.156 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A 111 "    0.027 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  12 "    0.142 2.00e-02 2.50e+03   7.77e-02 1.81e+02
        model="   1" pdb=" CG  TYR A  12 "    0.015 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  12 "   -0.009 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  12 "   -0.042 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  12 "   -0.044 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  12 "   -0.009 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  12 "    0.029 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  12 "    0.152 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  12 "   -0.002 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  12 "   -0.102 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  12 "   -0.116 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  12 "   -0.013 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.67 -     2.26: 248
        2.26 -     2.84: 4771
        2.84 -     3.43: 5565
        3.43 -     4.01: 6895
        4.01 -     4.60: 10374
  Nonbonded interactions: 27853
  Sorted by model distance:
  nonbonded model="   1" pdb="HG23 VAL A  41 "
            model="   1" pdb=" H   HIS A  43 "
     model   vdw
     1.672 2.270
  nonbonded model="   1" pdb=" OD2 ASP A  36 "
            model="   1" pdb=" HH  TYR A  68 "
     model   vdw
     1.691 1.850
  nonbonded model="   1" pdb=" OE1 GLU A 123 "
            model="   1" pdb=" HZ2 LYS A 125 "
     model   vdw
     1.691 1.850
  nonbonded model="   1" pdb=" HG3 LYS A  63 "
            model="   1" pdb="HD23 LEU A 107 "
     model   vdw
     1.738 2.440
  nonbonded model="   1" pdb=" HD2 LYS A  63 "
            model="   1" pdb="HG22 VAL A 104 "
     model   vdw
     1.745 2.440
  ... (remaining 27848 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 0.96
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 1.09 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 135
        1.23 -     1.43: 338
        1.43 -     1.63: 658
        1.63 -     1.83: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" CE1 HIS A 139 "
       model="   1" pdb=" NE2 HIS A 139 "
    ideal  model  delta    sigma   weight residual
    1.321  1.359 -0.038 1.00e-02 1.00e+04 1.42e+01
  bond model="   1" pdb=" CE1 HIS A  43 "
       model="   1" pdb=" NE2 HIS A  43 "
    ideal  model  delta    sigma   weight residual
    1.321  1.357 -0.036 1.00e-02 1.00e+04 1.33e+01
  bond model="   1" pdb=" CE1 HIS A 134 "
       model="   1" pdb=" NE2 HIS A 134 "
    ideal  model  delta    sigma   weight residual
    1.321  1.356 -0.035 1.00e-02 1.00e+04 1.26e+01
  bond model="   1" pdb=" CE1 HIS A 138 "
       model="   1" pdb=" NE2 HIS A 138 "
    ideal  model  delta    sigma   weight residual
    1.321  1.356 -0.035 1.00e-02 1.00e+04 1.24e+01
  bond model="   1" pdb=" CD  ARG A 129 "
       model="   1" pdb=" NE  ARG A 129 "
    ideal  model  delta    sigma   weight residual
    1.458  1.505 -0.047 1.40e-02 5.10e+03 1.13e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       94.32 -   102.84: 31
      102.84 -   111.36: 2407
      111.36 -   119.88: 881
      119.88 -   128.41: 743
      128.41 -   136.93: 15
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" CA  ASP A 116 "
        model="   1" pdb=" C   ASP A 116 "
        model="   1" pdb=" N   PRO A 117 "
      ideal   model   delta    sigma   weight residual
     116.90  130.42  -13.52 1.50e+00 4.44e-01 8.12e+01
  angle model="   1" pdb=" C   HIS A 135 "
        model="   1" pdb=" N   HIS A 136 "
        model="   1" pdb=" CA  HIS A 136 "
      ideal   model   delta    sigma   weight residual
     121.70  136.93  -15.23 1.80e+00 3.09e-01 7.16e+01
  angle model="   1" pdb=" C   GLU A 133 "
        model="   1" pdb=" N   HIS A 134 "
        model="   1" pdb=" CA  HIS A 134 "
      ideal   model   delta    sigma   weight residual
     121.70  135.06  -13.36 1.80e+00 3.09e-01 5.51e+01
  angle model="   1" pdb=" N   PRO A 114 "
        model="   1" pdb=" CA  PRO A 114 "
        model="   1" pdb=" C   PRO A 114 "
      ideal   model   delta    sigma   weight residual
     112.10  129.56  -17.46 2.50e+00 1.60e-01 4.88e+01
  angle model="   1" pdb=" CA  HIS A 138 "
        model="   1" pdb=" CB  HIS A 138 "
        model="   1" pdb=" CG  HIS A 138 "
      ideal   model   delta    sigma   weight residual
     113.80  120.72   -6.92 1.00e+00 1.00e+00 4.79e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    15.66: 974
       15.66 -    31.32: 39
       31.32 -    46.98: 13
       46.98 -    62.64: 4
       62.64 -    78.30: 2
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" N   HIS A 135 "
           model="   1" pdb=" C   HIS A 135 "
           model="   1" pdb=" CA  HIS A 135 "
           model="   1" pdb=" CB  HIS A 135 "
      ideal   model   delta  harmonic     sigma   weight residual
     122.80  138.05  -15.25     0      2.50e+00 1.60e-01 3.72e+01
  dihedral model="   1" pdb=" CA  PRO A 114 "
           model="   1" pdb=" C   PRO A 114 "
           model="   1" pdb=" N   ALA A 115 "
           model="   1" pdb=" CA  ALA A 115 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  149.81   30.19     0      5.00e+00 4.00e-02 3.65e+01
  dihedral model="   1" pdb=" CA  LYS A 113 "
           model="   1" pdb=" C   LYS A 113 "
           model="   1" pdb=" N   PRO A 114 "
           model="   1" pdb=" CA  PRO A 114 "
      ideal   model   delta  harmonic     sigma   weight residual
    -180.00 -150.34  -29.66     0      5.00e+00 4.00e-02 3.52e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.000 -    0.119: 134
       0.119 -    0.237: 30
       0.237 -    0.355: 7
       0.355 -    0.473: 2
       0.473 -    0.591: 3
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  PRO A 114 "
            model="   1" pdb=" N   PRO A 114 "
            model="   1" pdb=" C   PRO A 114 "
            model="   1" pdb=" CB  PRO A 114 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.72    2.13    0.59 2.00e-01 2.50e+01 8.75e+00
  chirality model="   1" pdb=" CA  HIS A 135 "
            model="   1" pdb=" N   HIS A 135 "
            model="   1" pdb=" C   HIS A 135 "
            model="   1" pdb=" CB  HIS A 135 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    1.96    0.55 2.00e-01 2.50e+01 7.63e+00
  chirality model="   1" pdb=" CA  HIS A 137 "
            model="   1" pdb=" N   HIS A 137 "
            model="   1" pdb=" C   HIS A 137 "
            model="   1" pdb=" CB  HIS A 137 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.03    0.48 2.00e-01 2.50e+01 5.75e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  HIS A 134 "    0.181 2.00e-02 2.50e+03   1.08e-01 2.32e+02
        model="   1" pdb=" CG  HIS A 134 "   -0.166 2.00e-02 2.50e+03
        model="   1" pdb=" ND1 HIS A 134 "   -0.139 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 HIS A 134 "   -0.030 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 HIS A 134 "    0.015 2.00e-02 2.50e+03
        model="   1" pdb=" NE2 HIS A 134 "    0.082 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 HIS A 134 "   -0.015 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 HIS A 134 "    0.072 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  HIS A 136 "    0.142 2.00e-02 2.50e+03   8.49e-02 1.44e+02
        model="   1" pdb=" CG  HIS A 136 "   -0.134 2.00e-02 2.50e+03
        model="   1" pdb=" ND1 HIS A 136 "   -0.107 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 HIS A 136 "   -0.024 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 HIS A 136 "    0.013 2.00e-02 2.50e+03
        model="   1" pdb=" NE2 HIS A 136 "    0.062 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 HIS A 136 "   -0.010 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 HIS A 136 "    0.059 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  HIS A 138 "    0.135 2.00e-02 2.50e+03   8.01e-02 1.28e+02
        model="   1" pdb=" CG  HIS A 138 "   -0.122 2.00e-02 2.50e+03
        model="   1" pdb=" ND1 HIS A 138 "   -0.104 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 HIS A 138 "   -0.024 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 HIS A 138 "    0.012 2.00e-02 2.50e+03
        model="   1" pdb=" NE2 HIS A 138 "    0.057 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 HIS A 138 "   -0.014 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 HIS A 138 "    0.058 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.63 -     2.22: 175
        2.22 -     2.82: 4548
        2.82 -     3.41: 5580
        3.41 -     4.01: 6785
        4.01 -     4.60: 10269
  Nonbonded interactions: 27357
  Sorted by model distance:
  nonbonded model="   1" pdb=" HB3 SER A  13 "
            model="   1" pdb=" H   PHE A  15 "
     model   vdw
     1.627 2.270
  nonbonded model="   1" pdb=" HH  TYR A  68 "
            model="   1" pdb=" OE2 GLU A  75 "
     model   vdw
     1.798 1.850
  nonbonded model="   1" pdb=" HZ  PHE A  15 "
            model="   1" pdb=" HB1 ALA A  69 "
     model   vdw
     1.857 2.270
  nonbonded model="   1" pdb=" HB3 LEU A   3 "
            model="   1" pdb="HD23 LEU A  53 "
     model   vdw
     1.886 2.440
  nonbonded model="   1" pdb=" HA  HIS A 137 "
            model="   1" pdb=" HB2 HIS A 138 "
     model   vdw
     1.905 2.440
  ... (remaining 27352 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.
  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 125
        1.23 -     1.43: 346
        1.43 -     1.63: 660
        1.63 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" CE1 HIS A 139 "
       model="   1" pdb=" NE2 HIS A 139 "
    ideal  model  delta    sigma   weight residual
    1.321  1.358 -0.037 1.00e-02 1.00e+04 1.38e+01
  bond model="   1" pdb=" CE1 HIS A  43 "
       model="   1" pdb=" NE2 HIS A  43 "
    ideal  model  delta    sigma   weight residual
    1.321  1.358 -0.037 1.00e-02 1.00e+04 1.37e+01
  bond model="   1" pdb=" CE1 HIS A 134 "
       model="   1" pdb=" NE2 HIS A 134 "
    ideal  model  delta    sigma   weight residual
    1.321  1.358 -0.037 1.00e-02 1.00e+04 1.34e+01
  bond model="   1" pdb=" CE1 HIS A 137 "
       model="   1" pdb=" NE2 HIS A 137 "
    ideal  model  delta    sigma   weight residual
    1.321  1.358 -0.037 1.00e-02 1.00e+04 1.34e+01
  bond model="   1" pdb=" CE1 HIS A 136 "
       model="   1" pdb=" NE2 HIS A 136 "
    ideal  model  delta    sigma   weight residual
    1.321  1.357 -0.036 1.00e-02 1.00e+04 1.31e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       92.15 -   100.13: 9
      100.13 -   108.11: 591
      108.11 -   116.09: 2407
      116.09 -   124.07: 944
      124.07 -   132.05: 126
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" CA  LYS A 101 "
        model="   1" pdb=" C   LYS A 101 "
        model="   1" pdb=" N   PRO A 102 "
      ideal   model   delta    sigma   weight residual
     116.90  127.26  -10.36 1.50e+00 4.44e-01 4.77e+01
  angle model="   1" pdb=" C   SER A  98 "
        model="   1" pdb=" CA  SER A  98 "
        model="   1" pdb=" CB  SER A  98 "
      ideal   model   delta    sigma   weight residual
     110.10   97.64   12.46 1.90e+00 2.77e-01 4.30e+01
  angle model="   1" pdb=" N   SER A  98 "
        model="   1" pdb=" CA  SER A  98 "
        model="   1" pdb=" HA  SER A  98 "
      ideal   model   delta    sigma   weight residual
     110.00   92.15   17.85 3.00e+00 1.11e-01 3.54e+01
  angle model="   1" pdb=" N   LEU A  99 "
        model="   1" pdb=" CA  LEU A  99 "
        model="   1" pdb=" HA  LEU A  99 "
      ideal   model   delta    sigma   weight residual
     110.00   92.30   17.70 3.00e+00 1.11e-01 3.48e+01
  angle model="   1" pdb=" CA  LYS A 113 "
        model="   1" pdb=" C   LYS A 113 "
        model="   1" pdb=" N   PRO A 114 "
      ideal   model   delta    sigma   weight residual
     116.90  125.62   -8.72 1.50e+00 4.44e-01 3.38e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    14.23: 959
       14.23 -    28.45: 50
       28.45 -    42.68: 14
       42.68 -    56.90: 6
       56.90 -    71.13: 3
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" CA  TYR A  89 "
           model="   1" pdb=" C   TYR A  89 "
           model="   1" pdb=" N   SER A  90 "
           model="   1" pdb=" CA  SER A  90 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  145.70   34.30     0      5.00e+00 4.00e-02 4.71e+01
  dihedral model="   1" pdb=" C   VAL A  14 "
           model="   1" pdb=" N   VAL A  14 "
           model="   1" pdb=" CA  VAL A  14 "
           model="   1" pdb=" CB  VAL A  14 "
      ideal   model   delta  harmonic     sigma   weight residual
    -122.00 -138.38   16.38     0      2.50e+00 1.60e-01 4.29e+01
  dihedral model="   1" pdb=" N   VAL A  14 "
           model="   1" pdb=" C   VAL A  14 "
           model="   1" pdb=" CA  VAL A  14 "
           model="   1" pdb=" CB  VAL A  14 "
      ideal   model   delta  harmonic     sigma   weight residual
     123.40  138.23  -14.83     0      2.50e+00 1.60e-01 3.52e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.000 -    0.111: 130
       0.111 -    0.222: 36
       0.222 -    0.333: 6
       0.333 -    0.443: 2
       0.443 -    0.554: 2
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  LEU A  99 "
            model="   1" pdb=" N   LEU A  99 "
            model="   1" pdb=" C   LEU A  99 "
            model="   1" pdb=" CB  LEU A  99 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    1.96    0.55 2.00e-01 2.50e+01 7.68e+00
  chirality model="   1" pdb=" CA  VAL A  14 "
            model="   1" pdb=" N   VAL A  14 "
            model="   1" pdb=" C   VAL A  14 "
            model="   1" pdb=" CB  VAL A  14 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.44    1.93    0.51 2.00e-01 2.50e+01 6.60e+00
  chirality model="   1" pdb=" CA  TYR A  89 "
            model="   1" pdb=" N   TYR A  89 "
            model="   1" pdb=" C   TYR A  89 "
            model="   1" pdb=" CB  TYR A  89 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.09    0.42 2.00e-01 2.50e+01 4.48e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  PHE A  45 "    0.008 2.00e-02 2.50e+03   6.06e-02 1.10e+02
        model="   1" pdb=" CG  PHE A  45 "    0.009 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 PHE A  45 "   -0.031 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 PHE A  45 "    0.032 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 PHE A  45 "    0.023 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 PHE A  45 "   -0.040 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  PHE A  45 "    0.013 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 PHE A  45 "   -0.094 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 PHE A  45 "    0.096 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 PHE A  45 "    0.066 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 PHE A  45 "   -0.124 2.00e-02 2.50e+03
        model="   1" pdb=" HZ  PHE A  45 "    0.042 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A 111 "   -0.130 2.00e-02 2.50e+03   5.96e-02 1.07e+02
        model="   1" pdb=" CG  TYR A 111 "    0.016 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A 111 "    0.050 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A 111 "    0.013 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A 111 "   -0.018 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A 111 "    0.019 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A 111 "   -0.016 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A 111 "   -0.043 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A 111 "    0.118 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A 111 "    0.009 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A 111 "   -0.064 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A 111 "    0.046 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  50 "    0.013 2.00e-02 2.50e+03   5.69e-02 9.72e+01
        model="   1" pdb=" CG  TYR A  50 "   -0.044 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  50 "    0.012 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  50 "   -0.034 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  50 "   -0.000 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  50 "    0.047 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  50 "    0.015 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  50 "   -0.086 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  50 "    0.058 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  50 "   -0.084 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  50 "   -0.019 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  50 "    0.122 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.73 -     2.30: 325
        2.30 -     2.88: 5030
        2.88 -     3.45: 5062
        3.45 -     4.03: 6416
        4.03 -     4.60: 9691
  Nonbonded interactions: 26524
  Sorted by model distance:
  nonbonded model="   1" pdb="HD23 LEU A  53 "
            model="   1" pdb=" HE  ARG A  58 "
     model   vdw
     1.726 2.270
  nonbonded model="   1" pdb=" H   LEU A   2 "
            model="   1" pdb=" HG  LEU A   2 "
     model   vdw
     1.774 2.270
  nonbonded model="   1" pdb=" OE2 GLU A  24 "
            model="   1" pdb=" HZ2 LYS A  27 "
     model   vdw
     1.781 1.850
  nonbonded model="   1" pdb=" OE2 GLU A  16 "
            model="   1" pdb=" HZ2 LYS A  19 "
     model   vdw
     1.789 1.850
  nonbonded model="   1" pdb=" OD1 ASP A  36 "
            model="   1" pdb=" HZ1 LYS A 101 "
     model   vdw
     1.795 1.850
  ... (remaining 26519 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.
  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 132
        1.23 -     1.43: 338
        1.43 -     1.63: 661
        1.63 -     1.83: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" CD  ARG A 127 "
       model="   1" pdb=" NE  ARG A 127 "
    ideal  model  delta    sigma   weight residual
    1.458  1.516 -0.058 1.40e-02 5.10e+03 1.72e+01
  bond model="   1" pdb=" CE1 HIS A 134 "
       model="   1" pdb=" NE2 HIS A 134 "
    ideal  model  delta    sigma   weight residual
    1.321  1.359 -0.038 1.00e-02 1.00e+04 1.44e+01
  bond model="   1" pdb=" CE1 HIS A 135 "
       model="   1" pdb=" NE2 HIS A 135 "
    ideal  model  delta    sigma   weight residual
    1.321  1.359 -0.038 1.00e-02 1.00e+04 1.42e+01
  bond model="   1" pdb=" CE1 HIS A 139 "
       model="   1" pdb=" NE2 HIS A 139 "
    ideal  model  delta    sigma   weight residual
    1.321  1.359 -0.038 1.00e-02 1.00e+04 1.41e+01
  bond model="   1" pdb=" CE1 HIS A 136 "
       model="   1" pdb=" NE2 HIS A 136 "
    ideal  model  delta    sigma   weight residual
    1.321  1.357 -0.036 1.00e-02 1.00e+04 1.33e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       96.69 -   103.61: 28
      103.61 -   110.52: 2228
      110.52 -   117.44: 819
      117.44 -   124.36: 894
      124.36 -   131.27: 108
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" CA  ILE A  51 "
        model="   1" pdb=" C   ILE A  51 "
        model="   1" pdb=" N   PRO A  52 "
      ideal   model   delta    sigma   weight residual
     116.90  130.08  -13.18 1.50e+00 4.44e-01 7.72e+01
  angle model="   1" pdb=" CA  ASP A 116 "
        model="   1" pdb=" C   ASP A 116 "
        model="   1" pdb=" N   PRO A 117 "
      ideal   model   delta    sigma   weight residual
     116.90  128.81  -11.91 1.50e+00 4.44e-01 6.30e+01
  angle model="   1" pdb=" CA  LYS A 101 "
        model="   1" pdb=" C   LYS A 101 "
        model="   1" pdb=" N   PRO A 102 "
      ideal   model   delta    sigma   weight residual
     116.90  127.51  -10.61 1.50e+00 4.44e-01 5.01e+01
  angle model="   1" pdb=" O   ILE A  51 "
        model="   1" pdb=" C   ILE A  51 "
        model="   1" pdb=" N   PRO A  52 "
      ideal   model   delta    sigma   weight residual
     123.00  113.89    9.11 1.60e+00 3.91e-01 3.24e+01
  angle model="   1" pdb=" N   GLU A 133 "
        model="   1" pdb=" CA  GLU A 133 "
        model="   1" pdb=" CB  GLU A 133 "
      ideal   model   delta    sigma   weight residual
     110.50  119.16   -8.66 1.70e+00 3.46e-01 2.59e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    12.11: 937
       12.11 -    24.21: 68
       24.21 -    36.32: 15
       36.32 -    48.43: 5
       48.43 -    60.53: 7
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" CA  PRO A 117 "
           model="   1" pdb=" C   PRO A 117 "
           model="   1" pdb=" N   ASP A 118 "
           model="   1" pdb=" CA  ASP A 118 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  139.31   40.69     0      5.00e+00 4.00e-02 6.62e+01
  dihedral model="   1" pdb=" C   ILE A  51 "
           model="   1" pdb=" N   ILE A  51 "
           model="   1" pdb=" CA  ILE A  51 "
           model="   1" pdb=" CB  ILE A  51 "
      ideal   model   delta  harmonic     sigma   weight residual
    -122.00 -141.07   19.07     0      2.50e+00 1.60e-01 5.82e+01
  dihedral model="   1" pdb=" N   ASP A 116 "
           model="   1" pdb=" C   ASP A 116 "
           model="   1" pdb=" CA  ASP A 116 "
           model="   1" pdb=" CB  ASP A 116 "
      ideal   model   delta  harmonic     sigma   weight residual
     122.80  141.83  -19.03     0      2.50e+00 1.60e-01 5.80e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.000 -    0.157: 157
       0.157 -    0.313: 15
       0.313 -    0.470: 2
       0.470 -    0.626: 1
       0.626 -    0.782: 1
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  ASP A 116 "
            model="   1" pdb=" N   ASP A 116 "
            model="   1" pdb=" C   ASP A 116 "
            model="   1" pdb=" CB  ASP A 116 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    1.73    0.78 2.00e-01 2.50e+01 1.53e+01
  chirality model="   1" pdb=" CA  ILE A  51 "
            model="   1" pdb=" N   ILE A  51 "
            model="   1" pdb=" C   ILE A  51 "
            model="   1" pdb=" CB  ILE A  51 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.43    1.90    0.53 2.00e-01 2.50e+01 6.99e+00
  chirality model="   1" pdb=" CA  ASP A 118 "
            model="   1" pdb=" N   ASP A 118 "
            model="   1" pdb=" C   ASP A 118 "
            model="   1" pdb=" CB  ASP A 118 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.11    0.40 2.00e-01 2.50e+01 3.97e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A 111 "    0.104 2.00e-02 2.50e+03   6.24e-02 1.17e+02
        model="   1" pdb=" CG  TYR A 111 "    0.023 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A 111 "   -0.021 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A 111 "   -0.011 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A 111 "   -0.021 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A 111 "   -0.034 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A 111 "    0.022 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A 111 "    0.142 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A 111 "   -0.049 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A 111 "   -0.019 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A 111 "   -0.049 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A 111 "   -0.086 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  91 "   -0.047 2.00e-02 2.50e+03   3.76e-02 4.24e+01
        model="   1" pdb=" CG  TYR A  91 "   -0.021 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  91 "    0.004 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  91 "    0.006 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  91 "    0.021 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  91 "    0.019 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  91 "   -0.007 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  91 "   -0.093 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  91 "    0.009 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  91 "    0.016 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  91 "    0.051 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  91 "    0.044 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A 105 "   -0.076 2.00e-02 2.50e+03   3.32e-02 3.31e+01
        model="   1" pdb=" CG  TYR A 105 "    0.005 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A 105 "    0.012 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A 105 "    0.019 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A 105 "    0.012 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A 105 "    0.005 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A 105 "   -0.020 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A 105 "   -0.058 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A 105 "    0.018 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A 105 "    0.038 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A 105 "    0.033 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A 105 "    0.012 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.65 -     2.24: 159
        2.24 -     2.83: 45
  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 1.00
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 1.14 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

17
        2.83 -     3.42: 5349
        3.42 -     4.01: 6259
        4.01 -     4.60: 9466
  Nonbonded interactions: 25750
  Sorted by model distance:
  nonbonded model="   1" pdb="HG23 VAL A  41 "
            model="   1" pdb=" H   HIS A  43 "
     model   vdw
     1.649 2.270
  nonbonded model="   1" pdb=" HZ3 LYS A  10 "
            model="   1" pdb=" OD1 ASP A  23 "
     model   vdw
     1.825 1.850
  nonbonded model="   1" pdb=" HB3 SER A  13 "
            model="   1" pdb="HE21 GLN A  66 "
     model   vdw
     1.887 2.270
  nonbonded model="   1" pdb="HD22 LEU A   3 "
            model="   1" pdb="HD22 LEU A  53 "
     model   vdw
     1.887 2.440
  nonbonded model="   1" pdb=" H   ASP A 116 "
            model="   1" pdb=" HA  ASP A 116 "
     model   vdw
     1.942 1.816
  ... (remaining 25745 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.
  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 138
        1.23 -     1.43: 329
        1.43 -     1.63: 664
        1.63 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" CE1 HIS A 134 "
       model="   1" pdb=" NE2 HIS A 134 "
    ideal  model  delta    sigma   weight residual
    1.321  1.356 -0.035 1.00e-02 1.00e+04 1.22e+01
  bond model="   1" pdb=" CE1 HIS A 137 "
       model="   1" pdb=" NE2 HIS A 137 "
    ideal  model  delta    sigma   weight residual
    1.321  1.356 -0.035 1.00e-02 1.00e+04 1.21e+01
  bond model="   1" pdb=" CE1 HIS A 136 "
       model="   1" pdb=" NE2 HIS A 136 "
    ideal  model  delta    sigma   weight residual
    1.321  1.356 -0.035 1.00e-02 1.00e+04 1.20e+01
  bond model="   1" pdb=" CE1 HIS A 135 "
       model="   1" pdb=" NE2 HIS A 135 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.18e+01
  bond model="   1" pdb=" CE1 HIS A 139 "
       model="   1" pdb=" NE2 HIS A 139 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.16e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       93.95 -   101.42: 9
      101.42 -   108.89: 913
      108.89 -   116.35: 2093
      116.35 -   123.82: 911
      123.82 -   131.28: 151
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" N   PRO A 114 "
        model="   1" pdb=" CA  PRO A 114 "
        model="   1" pdb=" C   PRO A 114 "
      ideal   model   delta    sigma   weight residual
     112.10  127.86  -15.76 2.50e+00 1.60e-01 3.98e+01
  angle model="   1" pdb=" CA  ILE A  77 "
        model="   1" pdb=" CB  ILE A  77 "
        model="   1" pdb=" CG1 ILE A  77 "
      ideal   model   delta    sigma   weight residual
     110.40  120.52  -10.12 1.70e+00 3.46e-01 3.54e+01
  angle model="   1" pdb=" CA  ILE A  30 "
        model="   1" pdb=" CB  ILE A  30 "
        model="   1" pdb=" CG1 ILE A  30 "
      ideal   model   delta    sigma   weight residual
     110.40  120.21   -9.81 1.70e+00 3.46e-01 3.33e+01
  angle model="   1" pdb=" CA  LYS A 101 "
        model="   1" pdb=" C   LYS A 101 "
        model="   1" pdb=" N   PRO A 102 "
      ideal   model   delta    sigma   weight residual
     116.90  125.43   -8.53 1.50e+00 4.44e-01 3.23e+01
  angle model="   1" pdb=" N   ASP A  74 "
        model="   1" pdb=" CA  ASP A  74 "
        model="   1" pdb=" C   ASP A  74 "
      ideal   model   delta    sigma   weight residual
     111.00   95.46   15.54 2.80e+00 1.28e-01 3.08e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    17.42: 986
       17.42 -    34.84: 37
       34.84 -    52.26: 5
       52.26 -    69.68: 3
       69.68 -    87.10: 1
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" CA  GLU A 120 "
           model="   1" pdb=" C   GLU A 120 "
           model="   1" pdb=" N   GLY A 121 "
           model="   1" pdb=" CA  GLY A 121 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  144.17   35.83     0      5.00e+00 4.00e-02 5.14e+01
  dihedral model="   1" pdb=" N   SER A  97 "
           model="   1" pdb=" C   SER A  97 "
           model="   1" pdb=" CA  SER A  97 "
           model="   1" pdb=" CB  SER A  97 "
      ideal   model   delta  harmonic     sigma   weight residual
     122.80  138.93  -16.13     0      2.50e+00 1.60e-01 4.16e+01
  dihedral model="   1" pdb=" C   SER A  97 "
           model="   1" pdb=" N   SER A  97 "
           model="   1" pdb=" CA  SER A  97 "
           model="   1" pdb=" CB  SER A  97 "
      ideal   model   delta  harmonic     sigma   weight residual
    -122.60 -137.31   14.71     0      2.50e+00 1.60e-01 3.46e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.001 -    0.120: 138
       0.120 -    0.239: 32
       0.239 -    0.358: 2
       0.358 -    0.477: 2
       0.477 -    0.596: 2
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  SER A  97 "
            model="   1" pdb=" N   SER A  97 "
            model="   1" pdb=" C   SER A  97 "
            model="   1" pdb=" CB  SER A  97 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    1.91    0.60 2.00e-01 2.50e+01 8.87e+00
  chirality model="   1" pdb=" CA  PRO A 114 "
            model="   1" pdb=" N   PRO A 114 "
            model="   1" pdb=" C   PRO A 114 "
            model="   1" pdb=" CB  PRO A 114 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.72    2.15    0.57 2.00e-01 2.50e+01 8.11e+00
  chirality model="   1" pdb=" CG  LEU A   2 "
            model="   1" pdb=" CB  LEU A   2 "
            model="   1" pdb=" CD1 LEU A   2 "
            model="   1" pdb=" CD2 LEU A   2 "
    both_signs  ideal   model   delta    sigma   weight residual
      False     -2.59   -2.16   -0.43 2.00e-01 2.50e+01 4.55e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  68 "   -0.152 2.00e-02 2.50e+03   7.71e-02 1.78e+02
        model="   1" pdb=" CG  TYR A  68 "   -0.031 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  68 "    0.028 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  68 "    0.027 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  68 "    0.027 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  68 "    0.031 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  68 "   -0.022 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  68 "   -0.164 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  68 "    0.067 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  68 "    0.062 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  68 "    0.058 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  68 "    0.069 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A 105 "    0.001 2.00e-02 2.50e+03   4.49e-02 6.04e+01
        model="   1" pdb=" CG  TYR A 105 "   -0.022 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A 105 "    0.023 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A 105 "   -0.019 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A 105 "   -0.035 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A 105 "    0.009 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A 105 "   -0.010 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A 105 "    0.046 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A 105 "    0.093 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A 105 "   -0.035 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A 105 "   -0.089 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A 105 "    0.039 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  81 "    0.008 2.00e-02 2.50e+03   3.67e-02 4.04e+01
        model="   1" pdb=" CG  TYR A  81 "    0.024 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  81 "   -0.016 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  81 "    0.019 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  81 "    0.008 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  81 "   -0.028 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  81 "   -0.007 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  81 "    0.041 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  81 "   -0.059 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  81 "    0.049 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  81 "    0.035 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  81 "   -0.073 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.68 -     2.26: 242
        2.26 -     2.85: 4837
        2.85 -     3.43: 5242
        3.43 -     4.02: 6524
        4.02 -     4.60: 9935
  Nonbonded interactions: 26780
  Sorted by model distance:
  nonbonded model="   1" pdb=" H3  MET A   1 "
            model="   1" pdb=" OD2 ASP A  47 "
     model   vdw
     1.679 1.850
  nonbonded model="   1" pdb=" OD1 ASP A   7 "
            model="   1" pdb=" HZ2 LYS A  10 "
     model   vdw
     1.726 1.850
  nonbonded model="   1" pdb=" OE1 GLU A  55 "
            model="   1" pdb=" HE  ARG A  58 "
     model   vdw
     1.794 1.850
  nonbonded model="   1" pdb=" OE2 GLU A  55 "
            model="   1" pdb="HH21 ARG A  58 "
     model   vdw
     1.801 1.850
  nonbonded model="   1" pdb=" HB3 LYS A 113 "
            model="   1" pdb=" HD2 PRO A 114 "
     model   vdw
     1.827 2.440
  ... (remaining 26775 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.
  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 127
        1.23 -     1.43: 340
        1.43 -     1.63: 664
        1.63 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" C   THR A  83 "
       model="   1" pdb=" N   GLU A  84 "
    ideal  model  delta    sigma   weight residual
    1.329  1.431 -0.102 1.40e-02 5.10e+03 5.27e+01
  bond model="   1" pdb=" C   GLU A  84 "
       model="   1" pdb=" N   LYS A  85 "
    ideal  model  delta    sigma   weight residual
    1.329  1.419 -0.090 1.40e-02 5.10e+03 4.17e+01
  bond model="   1" pdb=" N   GLU A  84 "
       model="   1" pdb=" CA  GLU A  84 "
    ideal  model  delta    sigma   weight residual
    1.458  1.574 -0.116 1.90e-02 2.77e+03 3.71e+01
  bond model="   1" pdb=" C   ASP A  95 "
       model="   1" pdb=" N   GLY A  96 "
    ideal  model  delta    sigma   weight residual
    1.329  1.388 -0.059 1.40e-02 5.10e+03 1.78e+01
  bond model="   1" pdb=" CA  GLU A  84 "
       model="   1" pdb=" C   GLU A  84 "
    ideal  model  delta    sigma   weight residual
    1.525  1.608 -0.083 2.10e-02 2.27e+03 1.56e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       88.56 -    97.81: 4
       97.81 -   107.06: 449
      107.06 -   116.32: 2551
      116.32 -   125.57: 1025
      125.57 -   134.83: 48
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" CA  ASP A  95 "
        model="   1" pdb=" CB  ASP A  95 "
        model="   1" pdb=" CG  ASP A  95 "
      ideal   model   delta    sigma   weight residual
     112.60  129.45  -16.85 1.00e+00 1.00e+00 2.84e+02
  angle model="   1" pdb=" C   ASP A  95 "
        model="   1" pdb=" CA  ASP A  95 "
        model="   1" pdb=" CB  ASP A  95 "
      ideal   model   delta    sigma   weight residual
     110.10  126.88  -16.78 1.90e+00 2.77e-01 7.80e+01
  angle model="   1" pdb=" CA  ILE A  51 "
        model="   1" pdb=" C   ILE A  51 "
        model="   1" pdb=" N   PRO A  52 "
      ideal   model   delta    sigma   weight residual
     116.90  128.43  -11.53 1.50e+00 4.44e-01 5.91e+01
  angle model="   1" pdb=" C   THR A  83 "
        model="   1" pdb=" N   GLU A  84 "
        model="   1" pdb=" CA  GLU A  84 "
      ideal   model   delta    sigma   weight residual
     121.70  134.83  -13.13 1.80e+00 3.09e-01 5.32e+01
  angle model="   1" pdb=" N   SER A  97 "
        model="   1" pdb=" CA  SER A  97 "
        model="   1" pdb=" HA  SER A  97 "
      ideal   model   delta    sigma   weight residual
     110.00   88.56   21.44 3.00e+00 1.11e-01 5.11e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    15.61: 965
       15.61 -    31.21: 41
       31.21 -    46.82: 18
       46.82 -    62.42: 5
       62.42 -    78.03: 3
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" CA  GLU A  75 "
           model="   1" pdb=" C   GLU A  75 "
           model="   1" pdb=" N   SER A  76 "
           model="   1" pdb=" CA  SER A  76 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  136.03   43.97     0      5.00e+00 4.00e-02 7.73e+01
  dihedral model="   1" pdb=" CA  THR A  83 "
           model="   1" pdb=" C   THR A  83 "
           model="   1" pdb=" N   GLU A  84 "
           model="   1" pdb=" CA  GLU A  84 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  138.94   41.06     0      5.00e+00 4.00e-02 6.74e+01
  dihedral model="   1" pdb=" C   ASP A  95 "
           model="   1" pdb=" N   ASP A  95 "
           model="   1" pdb=" CA  ASP A  95 "
           model="   1" pdb=" CB  ASP A  95 "
      ideal   model   delta  harmonic     sigma   weight residual
    -122.60 -137.53   14.93     0      2.50e+00 1.60e-01 3.57e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.000 -    0.090: 114
       0.090 -    0.181: 49
       0.181 -    0.271: 10
       0.271 -    0.362: 0
     
  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 0.97
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 1.11 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  0.362 -    0.452: 3
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  THR A  82 "
            model="   1" pdb=" N   THR A  82 "
            model="   1" pdb=" C   THR A  82 "
            model="   1" pdb=" CB  THR A  82 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.53    2.07    0.45 2.00e-01 2.50e+01 5.11e+00
  chirality model="   1" pdb=" CA  SER A  97 "
            model="   1" pdb=" N   SER A  97 "
            model="   1" pdb=" C   SER A  97 "
            model="   1" pdb=" CB  SER A  97 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.09    0.42 2.00e-01 2.50e+01 4.42e+00
  chirality model="   1" pdb=" CA  SER A  76 "
            model="   1" pdb=" N   SER A  76 "
            model="   1" pdb=" C   SER A  76 "
            model="   1" pdb=" CB  SER A  76 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.14    0.37 2.00e-01 2.50e+01 3.40e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  81 "    0.114 2.00e-02 2.50e+03   4.68e-02 6.56e+01
        model="   1" pdb=" CG  TYR A  81 "   -0.043 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  81 "   -0.025 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  81 "   -0.027 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  81 "   -0.016 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  81 "   -0.013 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  81 "    0.002 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  81 "    0.089 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  81 "   -0.018 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  81 "   -0.025 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  81 "   -0.023 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  81 "   -0.014 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  HIS A  43 "   -0.081 2.00e-02 2.50e+03   4.78e-02 4.56e+01
        model="   1" pdb=" CG  HIS A  43 "    0.072 2.00e-02 2.50e+03
        model="   1" pdb=" ND1 HIS A  43 "    0.062 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 HIS A  43 "    0.014 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 HIS A  43 "   -0.007 2.00e-02 2.50e+03
        model="   1" pdb=" NE2 HIS A  43 "   -0.036 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 HIS A  43 "    0.010 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 HIS A  43 "   -0.034 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  50 "    0.058 2.00e-02 2.50e+03   3.66e-02 4.02e+01
        model="   1" pdb=" CG  TYR A  50 "   -0.029 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  50 "   -0.023 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  50 "   -0.001 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  50 "   -0.001 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  50 "   -0.025 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  50 "    0.004 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  50 "    0.066 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  50 "   -0.034 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  50 "    0.035 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  50 "    0.010 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  50 "   -0.061 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.61 -     2.21: 145
        2.21 -     2.80: 4370
        2.80 -     3.40: 5599
        3.40 -     4.00: 6786
        4.00 -     4.60: 10154
  Nonbonded interactions: 27054
  Sorted by model distance:
  nonbonded model="   1" pdb=" HB  THR A  83 "
            model="   1" pdb=" HA  ASP A  95 "
     model   vdw
     1.607 2.440
  nonbonded model="   1" pdb="HH22 ARG A  21 "
            model="   1" pdb="HD22 ASN A  72 "
     model   vdw
     1.777 2.100
  nonbonded model="   1" pdb=" H   ASP A  95 "
            model="   1" pdb=" HB2 ASP A  95 "
     model   vdw
     1.804 2.270
  nonbonded model="   1" pdb="HE21 GLN A  28 "
            model="   1" pdb=" OE2 GLU A  32 "
     model   vdw
     1.815 1.850
  nonbonded model="   1" pdb=" OE1 GLU A  55 "
            model="   1" pdb="HH21 ARG A  58 "
     model   vdw
     1.841 1.850
  ... (remaining 27049 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 0.91
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 1.04 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 130
        1.23 -     1.43: 336
        1.43 -     1.63: 665
        1.63 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" CE1 HIS A 139 "
       model="   1" pdb=" NE2 HIS A 139 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.17e+01
  bond model="   1" pdb=" CE1 HIS A 138 "
       model="   1" pdb=" NE2 HIS A 138 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.16e+01
  bond model="   1" pdb=" CE1 HIS A 135 "
       model="   1" pdb=" NE2 HIS A 135 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.16e+01
  bond model="   1" pdb=" CE1 HIS A 136 "
       model="   1" pdb=" NE2 HIS A 136 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.15e+01
  bond model="   1" pdb=" CE1 HIS A 134 "
       model="   1" pdb=" NE2 HIS A 134 "
    ideal  model  delta    sigma   weight residual
    1.321  1.354 -0.033 1.00e-02 1.00e+04 1.12e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       96.56 -   103.84: 31
      103.84 -   111.12: 2359
      111.12 -   118.40: 766
      118.40 -   125.68: 892
      125.68 -   132.97: 29
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" CA  LYS A 101 "
        model="   1" pdb=" C   LYS A 101 "
        model="   1" pdb=" N   PRO A 102 "
      ideal   model   delta    sigma   weight residual
     116.90  126.45   -9.55 1.50e+00 4.44e-01 4.05e+01
  angle model="   1" pdb=" C   HIS A 138 "
        model="   1" pdb=" N   HIS A 139 "
        model="   1" pdb=" CA  HIS A 139 "
      ideal   model   delta    sigma   weight residual
     121.70  132.97  -11.27 1.80e+00 3.09e-01 3.92e+01
  angle model="   1" pdb=" CA  ILE A  51 "
        model="   1" pdb=" C   ILE A  51 "
        model="   1" pdb=" N   PRO A  52 "
      ideal   model   delta    sigma   weight residual
     116.90  124.87   -7.97 1.50e+00 4.44e-01 2.82e+01
  angle model="   1" pdb=" CA  ASP A  29 "
        model="   1" pdb=" CB  ASP A  29 "
        model="   1" pdb=" CG  ASP A  29 "
      ideal   model   delta    sigma   weight residual
     112.60  117.86   -5.26 1.00e+00 1.00e+00 2.77e+01
  angle model="   1" pdb=" CA  ASP A  88 "
        model="   1" pdb=" CB  ASP A  88 "
        model="   1" pdb=" CG  ASP A  88 "
      ideal   model   delta    sigma   weight residual
     112.60  107.43    5.17 1.00e+00 1.00e+00 2.67e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    16.69: 978
       16.69 -    33.38: 38
       33.38 -    50.07: 10
       50.07 -    66.75: 5
       66.75 -    83.44: 1
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" CA  ASP A 116 "
           model="   1" pdb=" C   ASP A 116 "
           model="   1" pdb=" N   PRO A 117 "
           model="   1" pdb=" CA  PRO A 117 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  142.49   37.51     0      5.00e+00 4.00e-02 5.63e+01
  dihedral model="   1" pdb=" CA  ASP A  88 "
           model="   1" pdb=" C   ASP A  88 "
           model="   1" pdb=" N   TYR A  89 "
           model="   1" pdb=" CA  TYR A  89 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  145.75   34.25     0      5.00e+00 4.00e-02 4.69e+01
  dihedral model="   1" pdb=" CA  ALA A 115 "
           model="   1" pdb=" C   ALA A 115 "
           model="   1" pdb=" N   ASP A 116 "
           model="   1" pdb=" CA  ASP A 116 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  156.02   23.98     0      5.00e+00 4.00e-02 2.30e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.001 -    0.082: 125
       0.082 -    0.162: 37
       0.162 -    0.243: 7
       0.243 -    0.324: 5
       0.324 -    0.405: 2
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  TYR A  89 "
            model="   1" pdb=" N   TYR A  89 "
            model="   1" pdb=" C   TYR A  89 "
            model="   1" pdb=" CB  TYR A  89 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.11    0.41 2.00e-01 2.50e+01 4.10e+00
  chirality model="   1" pdb=" CA  THR A  34 "
            model="   1" pdb=" N   THR A  34 "
            model="   1" pdb=" C   THR A  34 "
            model="   1" pdb=" CB  THR A  34 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.53    2.16    0.37 2.00e-01 2.50e+01 3.33e+00
  chirality model="   1" pdb=" CA  PRO A 102 "
            model="   1" pdb=" N   PRO A 102 "
            model="   1" pdb=" C   PRO A 102 "
            model="   1" pdb=" CB  PRO A 102 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.72    2.41    0.31 2.00e-01 2.50e+01 2.45e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  PHE A  15 "    0.169 2.00e-02 2.50e+03   7.51e-02 1.69e+02
        model="   1" pdb=" CG  PHE A  15 "   -0.025 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 PHE A  15 "   -0.048 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 PHE A  15 "   -0.030 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 PHE A  15 "   -0.007 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 PHE A  15 "   -0.025 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  PHE A  15 "    0.047 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 PHE A  15 "   -0.091 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 PHE A  15 "   -0.036 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 PHE A  15 "   -0.017 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 PHE A  15 "   -0.070 2.00e-02 2.50e+03
        model="   1" pdb=" HZ  PHE A  15 "    0.133 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  68 "   -0.049 2.00e-02 2.50e+03   4.48e-02 6.01e+01
        model="   1" pdb=" CG  TYR A  68 "    0.034 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  68 "    0.021 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  68 "    0.019 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  68 "   -0.029 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  68 "   -0.026 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  68 "   -0.036 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  68 "    0.087 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  68 "    0.046 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  68 "    0.039 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  68 "   -0.057 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  68 "   -0.048 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" C   ASP A 116 "    0.116 5.00e-02 4.00e+02   1.75e-01 4.90e+01
        model="   1" pdb=" N   PRO A 117 "   -0.303 5.00e-02 4.00e+02
        model="   1" pdb=" CA  PRO A 117 "    0.096 5.00e-02 4.00e+02
        model="   1" pdb=" CD  PRO A 117 "    0.091 5.00e-02 4.00e+02
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.71 -     2.29: 301
        2.29 -     2.87: 4975
        2.87 -     3.44: 4952
        3.44 -     4.02: 6374
        4.02 -     4.60: 9400
  Nonbonded interactions: 26002
  Sorted by model distance:
  nonbonded model="   1" pdb=" OE2 GLU A  24 "
            model="   1" pdb=" HZ2 LYS A  27 "
     model   vdw
     1.712 1.850
  nonbonded model="   1" pdb=" HZ3 LYS A  10 "
            model="   1" pdb=" OD1 ASP A  23 "
     model   vdw
     1.745 1.850
  nonbonded model="   1" pdb=" OE2 GLU A  55 "
            model="   1" pdb="HH21 ARG A  58 "
     model   vdw
     1.784 1.850
  nonbonded model="   1" pdb="HE21 GLN A  28 "
            model="   1" pdb=" OE2 GLU A  32 "
     model   vdw
     1.812 1.850
  nonbonded model="   1" pdb=" OE1 GLU A  55 "
            model="   1" pdb=" HE  ARG A  58 "
     model   vdw
     1.889 1.850
  ... (remaining 25997 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 0.95
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 1.08 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.


  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 0.99
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 1.12 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.


  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 0.97
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 1.10 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.


  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 0.97
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 1.11 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 110
        1.23 -     1.43: 361
        1.43 -     1.63: 660
        1.63 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" CE1 HIS A 134 "
       model="   1" pdb=" NE2 HIS A 134 "
    ideal  model  delta    sigma   weight residual
    1.321  1.363 -0.042 1.00e-02 1.00e+04 1.79e+01
  bond model="   1" pdb=" CE1 HIS A 137 "
       model="   1" pdb=" NE2 HIS A 137 "
    ideal  model  delta    sigma   weight residual
    1.321  1.361 -0.040 1.00e-02 1.00e+04 1.63e+01
  bond model="   1" pdb=" CE1 HIS A 138 "
       model="   1" pdb=" NE2 HIS A 138 "
    ideal  model  delta    sigma   weight residual
    1.321  1.361 -0.040 1.00e-02 1.00e+04 1.62e+01
  bond model="   1" pdb=" CE1 HIS A 136 "
       model="   1" pdb=" NE2 HIS A 136 "
    ideal  model  delta    sigma   weight residual
    1.321  1.359 -0.038 1.00e-02 1.00e+04 1.46e+01
  bond model="   1" pdb=" CE1 HIS A 139 "
       model="   1" pdb=" NE2 HIS A 139 "
    ideal  model  delta    sigma   weight residual
    1.321  1.359 -0.038 1.00e-02 1.00e+04 1.44e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       95.68 -   103.28: 26
      103.28 -   110.87: 2274
      110.87 -   118.47: 861
      118.47 -   126.07: 884
      126.07 -   133.67: 32
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" CA  ILE A  30 "
        model="   1" pdb=" CB  ILE A  30 "
        model="   1" pdb=" CG1 ILE A  30 "
      ideal   model   delta    sigma   weight residual
     110.40  122.83  -12.43 1.70e+00 3.46e-01 5.35e+01
  angle model="   1" pdb=" N   PRO A 114 "
        model="   1" pdb=" CA  PRO A 114 "
        model="   1" pdb=" C   PRO A 114 "
      ideal   model   delta    sigma   weight residual
     112.10  125.43  -13.33 2.50e+00 1.60e-01 2.84e+01
  angle model="   1" pdb=" N   PRO A 114 "
        model="   1" pdb=" CD  PRO A 114 "
        model="   1" pdb=" CG  PRO A 114 "
      ideal   model   delta    sigma   weight residual
     103.20  110.65   -7.45 1.50e+00 4.44e-01 2.47e+01
  angle model="   1" pdb=" ND1 HIS A 134 "
        model="   1" pdb=" CG  HIS A 134 "
        model="   1" pdb=" CD2 HIS A 134 "
      ideal   model   delta    sigma   weight residual
     106.10  110.82   -4.72 1.00e+00 1.00e+00 2.23e+01
  angle model="   1" pdb=" C   LYS A 113 "
        model="   1" pdb=" CA  LYS A 113 "
        model="   1" pdb=" CB  LYS A 113 "
      ideal   model   delta    sigma   weight residual
     110.10  118.79   -8.69 1.90e+00 2.77e-01 2.09e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    15.66: 989
       15.66 -    31.32: 37
       31.32 -    46.98: 3
       46.98 -    62.65: 2
       62.65 -    78.31: 1
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" CA  TYR A  91 "
           model="   1" pdb=" C   TYR A  91 "
           model="   1" pdb=" N   THR A  92 "
           model="   1" pdb=" CA  THR A  92 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  150.02   29.98     0      5.00e+00 4.00e-02 3.60e+01
  dihedral model="   1" pdb=" CA  GLY A  87 "
           model="   1" pdb=" C   GLY A  87 "
           model="   1" pdb=" N   ASP A  88 "
           model="   1" pdb=" CA  ASP A  88 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  154.77   25.23     0      5.00e+00 4.00e-02 2.55e+01
  dihedral model="   1" pdb=" N   LYS A  85 "
           model="   1" pdb=" C   LYS A  85 "
           model="   1" pdb=" CA  LYS A  85 "
           model="   1" pdb=" CB  LYS A  85 "
      ideal   model   delta  harmonic     sigma   weight residual
     122.80  135.20  -12.40     0      2.50e+00 1.60e-01 2.46e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.002 -    0.095: 119
       0.095 -    0.189: 43
       0.189 -    0.282: 9
       0.282 -    0.375: 3
       0.375 -    0.469: 2
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  LYS A  85 "
            model="   1" pdb=" N   LYS A  85 "
            model="   1" pdb=" C   LYS A  85 "
            model="   1" pdb=" CB  LYS A  85 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.04    0.47 2.00e-01 2.50e+01 5.50e+00
  chirality model="   1" pdb=" CA  PRO A 114 "
            model="   1" pdb=" N   PRO A 114 "
            model="   1" pdb=" C   PRO A 114 "
            model="   1" pdb=" CB  PRO A 114 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.72    2.28    0.44 2.00e-01 2.50e+01 4.83e+00
  chirality model="   1" pdb=" CA  TYR A  91 "
            model="   1" pdb=" N   TYR A  91 "
            model="   1" pdb=" C   TYR A  91 "
            model="   1" pdb=" CB  TYR A  91 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.17    0.34 2.00e-01 2.50e+01 2.85e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  50 "    0.072 2.00e-02 2.50e+03   5.06e-02 7.68e+01
        model="   1" pdb=" CG  TYR A  50 "    0.018 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  50 "   -0.027 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  50 "    0.005 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  50 "   -0.004 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  50 "   -0.037 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  50 "   -0.016 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  50 "    0.101 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  50 "   -0.074 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  50 "    0.023 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  50 "    0.019 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  50 "   -0.079 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  12 "   -0.092 2.00e-02 2.50e+03   4.85e-02 7.05e+01
        model="   1" pdb=" CG  TYR A  12 "   -0.008 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  12 "    0.005 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  12 "    0.030 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  12 "    0.027 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  12 "    0.001 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  12 "   -0.014 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  12 "   -0.085 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  12 "   -0.001 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  12 "    0.076 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  12 "    0.069 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  12 "   -0.009 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  PHE A  15 "    0.002 2.00e-02 2.50e+03   4.15e-02 5.17e+01
        model="   1" pdb=" CG  PHE A  15 "    0.012 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 PHE A  15 "   -0.019 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 PHE A  15 "    0.023 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 PHE A  15 "    0.013 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 PHE A  15 "   -0.029 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  PHE A  15 "    0.012 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 PHE A  15 "   -0.061 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 PHE A  15 "    0.064 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 PHE A  15 "    0.035 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 PHE A  15 "   -0.090 2.00e-02 2.50e+03
        model="   1" pdb=" HZ  PHE A  15 "    0.038 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.72 -     2.30: 367
        2.30 -     2.87: 5031
        2.87 -     3.45: 5212
        3.45 -     4.02: 6448
        4.02 -     4.60: 9890
  Nonbonded interactions: 26948
  Sorted by model distance:
  nonbonded model="   1" pdb=" OE2 GLU A  75 "
            model="   1" pdb=" HZ1 LYS A  79 "
     model   vdw
     1.722 1.850
  nonbonded model="   1" pdb=" OD2 ASP A  95 "
            model="   1" pdb=" HZ3 LYS A 101 "
     model   vdw
     1.727 1.850
  nonbonded model="   1" pdb="HD13 ILE A  37 "
            model="   1" pdb="HE21 GLN A 100 "
     model   vdw
     1.729 2.270
  nonbonded model="   1" pdb=" HB3 LYS A 113 "
            model="   1" pdb=" HD2 PRO A 114 "
     model   vdw
     1.736 2.440
  nonbonded model="   1" pdb="HD12 ILE A   4 "
            model="   1" pdb="HD23 LEU A  62 "
     model   vdw
     1.776 2.440
  ... (remaining 26943 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.
  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 133
        1.23 -     1.43: 332
        1.43 -     1.63: 666
        1.63 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" CE1 HIS A 134 "
       model="   1" pdb=" NE2 HIS A 134 "
    ideal  model  delta    sigma   weight residual
    1.321  1.354 -0.033 1.00e-02 1.00e+04 1.12e+01
  bond model="   1" pdb=" CE1 HIS A 135 "
       model="   1" pdb=" NE2 HIS A 135 "
    ideal  model  delta    sigma   weight residual
    1.321  1.354 -0.033 1.00e-02 1.00e+04 1.09e+01
  bond model="   1" pdb=" CE1 HIS A 136 "
       model="   1" pdb=" NE2 HIS A 136 "
    ideal  model  delta    sigma   weight residual
    1.321  1.354 -0.033 1.00e-02 1.00e+04 1.09e+01
  bond model="   1" pdb=" CE1 HIS A 139 "
       model="   1" pdb=" NE2 HIS A 139 "
    ideal  model  delta    sigma   weight residual
    1.321  1.354 -0.033 1.00e-02 1.00e+04 1.09e+01
  bond model="   1" pdb=" CE1 HIS A 138 "
       model="   1" pdb=" NE2 HIS A 138 "
    ideal  model  delta    sigma   weight residual
    1.321  1.354 -0.033 1.00e-02 1.00e+04 1.08e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       95.86 -   103.10: 25
      103.10 -   110.33: 2164
      110.33 -   117.56: 898
      117.56 -   124.80: 916
      124.80 -   132.03: 74
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" C   SER A  97 "
        model="   1" pdb=" CA  SER A  97 "
        model="   1" pdb=" CB  SER A  97 "
      ideal   model   delta    sigma   weight residual
     110.10  121.24  -11.14 1.90e+00 2.77e-01 3.44e+01
  angle model="   1" pdb=" C   GLU A  75 "
        model="   1" pdb=" N   SER A  76 "
        model="   1" pdb=" CA  SER A  76 "
      ideal   model   delta    sigma   weight residual
     121.70  132.03  -10.33 1.80e+00 3.09e-01 3.29e+01
  angle model="   1" pdb=" CA  ASP A 116 "
        model="   1" pdb=" C   ASP A 116 "
        model="   1" pdb=" N   PRO A 117 "
      ideal   model   delta    sigma   weight residual
     116.90  124.36   -7.46 1.50e+00 4.44e-01 2.48e+01
  angle model="   1" pdb=" C   LEU A  93 "
        model="   1" pdb=" CA  LEU A  93 "
        model="   1" pdb=" CB  LEU A  93 "
      ideal   model   delta    sigma   weight residual
     110.10  119.17   -9.07 1.90e+00 2.77e-01 2.28e+01
  angle model="   1" pdb=" ND1 HIS A  43 "
        model="   1" pdb=" CG  HIS A  43 "
        model="   1" pdb=" CD2 HIS A  43 "
      ideal   model   delta    sigma   weight residual
     106.10  110.85   -4.75 1.00e+00 1.00e+00 2.26e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    17.45: 987
       17.45 -    34.90: 31
       34.90 -    52.35: 8
       52.35 -    69.80: 5
       69.80 -    87.25: 1
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" C   SER A  97 "
           model="   1" pdb=" N   SER A  97 "
           model="   1" pdb=" CA  SER A  97 "
           model="   1" pdb=" CB  SER A  97 "
      ideal   model   delta  harmonic     sigma   weight residual
    -122.60 -145.63   23.03     0      2.50e+00 1.60e-01 8.49e+01
  dihedral model="   1" pdb=" N   SER A  97 "
           model="   1" pdb=" C   SER A  97 "
           model="   1" pdb=" CA  SER A  97 "
           model="   1" pdb=" CB  SER A  97 "
      ideal   model   delta  harmonic     sigma   weight residual
     122.80  143.26  -20.46     0      2.50e+00 1.60e-01 6.70e+01
  dihedral model="   1" pdb=" CA  PRO A 117 "
           model="   1" pdb=" C   PRO A 117 "
           model="   1" pdb=" N   ASP A 118 "
           model="   1" pdb=" CA  ASP A 118 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  149.10   30.90     0      5.00e+00 4.00e-02 3.82e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.000 -    0.184: 164
       0.184 -    0.367: 10
       0.367 -    0.551: 1
       0.551 -    0.734: 0
       0.734 -    0.918: 1
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  SER A  97 "
            model="   1" pdb=" N   SER A  97 "
            model="   1" pdb=" C   SER A  97 "
            model="   1" pdb=" CB  SER A  97 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    1.59    0.92 2.00e-01 2.50e+01 2.10e+01
  chirality model="   1" pdb=" CA  LYS A  79 "
            model="   1" pdb=" N   LYS A  79 "
            model="   1" pdb=" C   LYS A  79 "
            model="   1" pdb=" CB  LYS A  79 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    1.99    0.52 2.00e-01 2.50e+01 6.72e+00
  chirality model="   1" pdb=" CA  LEU A   9 "
            model="   1" pdb=" N   LEU A   9 "
            model="   1" pdb=" C   LEU A   9 "
            model="   1" pdb=" CB  LEU A   9 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.21    0.30 2.00e-01 2.50e+01 2.23e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  81 "   -0.262 2.00e-02 2.50e+03   2.17e-01 1.41e+03
        model="   1" pdb=" CG  TYR A  81 "    0.118 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  81 "    0.041 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  81 "    0.154 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  81 "   -0.036 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  81 "   -0.159 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  81 "   -0.066 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  81 "    0.296 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  81 "    0.043 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  81 "    0.375 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  81 "   -0.069 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  81 "   -0.435 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  12 "    0.187 2.00e-02 2.50e+03   8.69e-02 2.27e+02
        model="   1" pdb=" CG  TYR A  12 "   -0.017 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  12 "   -0.058 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  12 "   -0.021 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  12 "   -0.008 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  12 "   -0.049 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  12 "   -0.026 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  12 "    0.160 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  12 "   -0.120 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  12 "   -0.005 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  12 "    0.039 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  12 "   -0.083 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  50 "    0.032 2.00e-02 2.50e+03   6.26e-02 1.18e+02
        model="   1" pdb=" CG  TYR A  50 "   -0.004 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  50 "   -0.043 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  50 "    0.021 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  50 "    0.042 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  50 "   -0.021 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  50 "   -0.004 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  50 "   -0.031 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  50 "   -0.126 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  50 "    0.065 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  50 "    0.130 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  50 "   -0.061 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.75 -     2.32: 387
        2.32 -     2.89: 5133
        2.89 -     3.46: 5056
        3.46 -     4.03: 6498
        4.03 -     4.60: 9746
  Nonbonded interactions: 26820
  Sorted by model distance:
  nonbonded model="   1" pdb="HG22 ILE A  78 "
            model="   1" pdb=" HG2 LYS A  79 "
     model   vdw
     1.750 2.440
  nonbonded model="   1" pdb=" OE2 GLU A  55 "
            model="   1" pdb="HH21 ARG A  58 "
     model   vdw
     1.753 1.850
  nonbonded model="   1" pdb=" OE1 GLU A  55 "
            model="   1" pdb=" HE  ARG A  58 "
     model   vdw
     1.774 1.850
  nonbonded model="   1" pdb=" HZ1 LYS A  79 "
            model="   1" pdb=" O   SER A  98 "
     model   vdw
     1.775 1.850
  nonbonded model="   1" pdb="HE22 GLN A 100 "
            model="   1" pdb="HG13 ILE A 108 "
     model   vdw
     1.837 2.270
  ... (remaining 26815 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 0.99
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 1.13 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 115
        1.23 -     1.43: 349
        1.43 -     1.62: 667
        1.62 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" CE1 HIS A 139 "
       model="   1" pdb=" NE2 HIS A 139 "
    ideal  model  delta    sigma   weight residual
    1.321  1.354 -0.033 1.00e-02 1.00e+04 1.09e+01
  bond model="   1" pdb=" C   ILE A  77 "
       model="   1" pdb=" N   ILE A  78 "
    ideal  model  delta    sigma   weight residual
    1.329  1.375 -0.046 1.40e-02 5.10e+03 1.08e+01
  bond model="   1" pdb=" CE1 HIS A 137 "
       model="   1" pdb=" NE2 HIS A 137 "
    ideal  model  delta    sigma   weight residual
    1.321  1.353 -0.032 1.00e-02 1.00e+04 1.05e+01
  bond model="   1" pdb=" CE1 HIS A  43 "
       model="   1" pdb=" NE2 HIS A  43 "
    ideal  model  delta    sigma   weight residual
    1.321  1.353 -0.032 1.00e-02 1.00e+04 1.05e+01
  bond model="   1" pdb=" CE1 HIS A 135 "
       model="   1" pdb=" NE2 HIS A 135 "
    ideal  model  delta    sigma   weight residual
    1.321  1.353 -0.032 1.00e-02 1.00e+04 1.03e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       95.94 -   103.06: 27
      103.06 -   110.19: 2135
      110.19 -   117.31: 897
      117.31 -   124.43: 932
      124.43 -   131.56: 86
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" CA  LYS A 101 "
        model="   1" pdb=" C   LYS A 101 "
        model="   1" pdb=" N   PRO A 102 "
      ideal   model   delta    sigma   weight residual
     116.90  126.22   -9.32 1.50e+00 4.44e-01 3.86e+01
  angle model="   1" pdb=" CA  LYS A 113 "
        model="   1" pdb=" C   LYS A 113 "
        model="   1" pdb=" N   PRO A 114 "
      ideal   model   delta    sigma   weight residual
     116.90  126.09   -9.19 1.50e+00 4.44e-01 3.76e+01
  angle model="   1" pdb=" C   ILE A  77 "
        model="   1" pdb=" N   ILE A  78 "
        model="   1" pdb=" CA  ILE A  78 "
      ideal   model   delta    sigma   weight residual
     121.70  130.99   -9.29 1.80e+00 3.09e-01 2.66e+01
  angle model="   1" pdb=" N   SER A  97 "
        model="   1" pdb=" CA  SER A  97 "
        model="   1" pdb=" CB  SER A  97 "
      ideal   model   delta    sigma   weight residual
     110.50  119.12   -8.62 1.70e+00 3.46e-01 2.57e+01
  angle model="   1" pdb=" CA  TYR A  50 "
        model="   1" pdb=" C   TYR A  50 "
        model="   1" pdb=" O   TYR A  50 "
      ideal   model   delta    sigma   weight residual
     120.80  112.23    8.57 1.70e+00 3.46e-01 2.54e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    16.78: 989
       16.78 -    33.57: 30
       33.57 -    50.35: 11
       50.35 -    67.14: 0
       67.14 -    83.92: 2
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" CA  SER A  97 "
           model="   1" pdb=" C   SER A  97 "
           model="   1" pdb=" N   SER A  98 "
           model="   1" pdb=" CA  SER A  98 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  147.47   32.53     0      5.00e+00 4.00e-02 4.23e+01
  dihedral model="   1" pdb=" C   SER A  46 "
           model="   1" pdb=" N   SER A  46 "
           model="   1" pdb=" CA  SER A  46 "
           model="   1" pdb=" CB  SER A  46 "
      ideal   model   delta  harmonic     sigma   weight residual
    -122.60 -135.69   13.09     0      2.50e+00 1.60e-01 2.74e+01
  dihedral model="   1" pdb=" N   SER A  46 "
           model="   1" pdb=" C   SER A  46 "
           model="   1" pdb=" CA  SER A  46 "
           model="   1" pdb=" CB  SER A  46 "
      ideal   model   delta  harmonic     sigma   weight residual
     122.80  135.40  -12.60     0      2.50e+00 1.60e-01 2.54e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.000 -    0.103: 129
       0.103 -    0.205: 33
       0.205 -    0.307: 12
       0.307 -    0.409: 0
       0.409 -    0.512: 2
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  SER A  46 "
            model="   1" pdb=" N   SER A  46 "
            model="   1" pdb=" C   SER A  46 "
            model="   1" pdb=" CB  SER A  46 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.00    0.51 2.00e-01 2.50e+01 6.54e+00
  chirality model="   1" pdb=" CB  ILE A  51 "
            model="   1" pdb=" CA  ILE A  51 "
            model="   1" pdb=" CG1 ILE A  51 "
            model="   1" pdb=" CG2 ILE A  51 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.64    2.19    0.45 2.00e-01 2.50e+01 5.16e+00
  chirality model="   1" pdb=" CA  ILE A  78 "
            model="   1" pdb=" N   ILE A  78 "
            model="   1" pdb=" C   ILE A  78 "
            model="   1" pdb=" CB  ILE A  78 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.43    2.14    0.29 2.00e-01 2.50e+01 2.12e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  PHE A  15 "    0.158 2.00e-02 2.50e+03   8.40e-02 2.12e+02
        model="   1" pdb=" CG  PHE A  15 "    0.034 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 PHE A  15 "   -0.051 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 PHE A  15 "   -0.016 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 PHE A  15 "    0.002 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 PHE A  15 "   -0.035 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  PHE A  15 "    0.049 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 PHE A  15 "   -0.145 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 PHE A  15 "   -0.036 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 PHE A  15 "    0.006 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 PHE A  15 "   -0.103 2.00e-02 2.50e+03
        model="   1" pdb=" HZ  PHE A  15 "    0.138 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  81 "    0.045 2.00e-02 2.50e+03   7.46e-02 1.67e+02
        model="   1" pdb=" CG  TYR A  81 "    0.015 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  81 "    0.030 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  81 "   -0.040 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  81 "   -0.059 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  81 "    0.013 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  81 "   -0.019 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  81 "    0.098 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  81 "    0.101 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  81 "   -0.111 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  81 "   -0.145 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  81 "    0.071 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  89 "    0.109 2.00e-02 2.50e+03   7.10e-02 1.51e+02
        model="   1" pdb=" CG  TYR A  89 "    0.036 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  89 "   -0.008 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  89 "   -0.022 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  89 "   -0.043 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  89 "   -0.028 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  89 "   -0.007 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  89 "    0.173 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  89 "   -0.015 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  89 "   -0.058 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  89 "   -0.092 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  89 "   -0.045 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.61 -     2.21: 146
        2.21 -     2.81: 4401
        2.81 -     3.41: 5491
        3.41 -     4.00: 6843
        4.00 -     4.60: 9985
  Nonbonded interactions: 26866
  Sorted by model distance:
  nonbonded model="   1" pdb="HG23 ILE A  30 "
            model="   1" pdb="HD21 LEU A  61 "
     model   vdw
     1.614 2.440
  nonbonded model="   1" pdb=" HZ1 LYS A  10 "
            model="   1" pdb=" OD1 ASP A  23 "
     model   vdw
     1.738 1.850
  nonbonded model="   1" pdb=" HH  TYR A  81 "
            model="   1" pdb=" OE2 GLU A  84 "
     model   vdw
     1.755 1.850
  nonbonded model="   1" pdb=" HG  LEU A   2 "
            model="   1" pdb="HG22 ILE A  30 "
     model   vdw
     1.766 2.440
  nonbonded model="   1" pdb=" OD1 ASP A  44 "
            model="   1" pdb=" H   SER A  46 "
     model   vdw
     1.815 1.850
  ... (remaining 26861 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 0.96
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 1.10 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 106
        1.23 -     1.43: 361
        1.43 -     1.63: 664
        1.63 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" CE1 HIS A 135 "
       model="   1" pdb=" NE2 HIS A 135 "
    ideal  model  delta    sigma   weight residual
    1.321  1.352 -0.031 1.00e-02 1.00e+04 9.76e+00
  bond model="   1" pdb=" CE1 HIS A 137 "
       model="   1" pdb=" NE2 HIS A 137 "
    ideal  model  delta    sigma   weight residual
    1.321  1.352 -0.031 1.00e-02 1.00e+04 9.60e+00
  bond model="   1" pdb=" CE1 HIS A 138 "
       model="   1" pdb=" NE2 HIS A 138 "
    ideal  model  delta    sigma   weight residual
    1.321  1.352 -0.031 1.00e-02 1.00e+04 9.60e+00
  bond model="   1" pdb=" CD  ARG A 127 "
       model="   1" pdb=" NE  ARG A 127 "
    ideal  model  delta    sigma   weight residual
    1.458  1.501 -0.043 1.40e-02 5.10e+03 9.43e+00
  bond model="   1" pdb=" CE1 HIS A 139 "
       model="   1" pdb=" NE2 HIS A 139 "
    ideal  model  delta    sigma   weight residual
    1.321  1.350 -0.029 1.00e-02 1.00e+04 8.55e+00
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       89.83 -    98.57: 5
       98.57 -   107.31: 480
      107.31 -   116.06: 2515
      116.06 -   124.80: 1003
      124.80 -   133.54: 74
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" N   TYR A  81 "
        model="   1" pdb=" CA  TYR A  81 "
        model="   1" pdb=" HA  TYR A  81 "
      ideal   model   delta    sigma   weight residual
     110.00   89.83   20.17 3.00e+00 1.11e-01 4.52e+01
  angle model="   1" pdb=" C   HIS A 136 "
        model="   1" pdb=" N   HIS A 137 "
        model="   1" pdb=" CA  HIS A 137 "
      ideal   model   delta    sigma   weight residual
     121.70  133.54  -11.84 1.80e+00 3.09e-01 4.33e+01
  angle model="   1" pdb=" N   PRO A 114 "
        model="   1" pdb=" CA  PRO A 114 "
        model="   1" pdb=" C   PRO A 114 "
      ideal   model   delta    sigma   weight residual
     112.10  127.97  -15.87 2.50e+00 1.60e-01 4.03e+01
  angle model="   1" pdb=" CA  PRO A 114 "
        model="   1" pdb=" C   PRO A 114 "
        model="   1" pdb=" N   ALA A 115 "
      ideal   model   delta    sigma   weight residual
     116.20  128.26  -12.06 2.00e+00 2.50e-01 3.64e+01
  angle model="   1" pdb=" CA  HIS A 136 "
        model="   1" pdb=" CB  HIS A 136 "
        model="   1" pdb=" CG  HIS A 136 "
      ideal   model   delta    sigma   weight residual
     113.80  119.79   -5.99 1.00e+00 1.00e+00 3.58e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    26.83: 1004
       26.83 -    53.66: 22
       53.66 -    80.49: 4
       80.49 -   107.32: 1
      107.32 -   134.15: 1
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" CA  HIS A 134 "
           model="   1" pdb=" C   HIS A 134 "
           model="   1" pdb=" N   HIS A 135 "
           model="   1" pdb=" CA  HIS A 135 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00   45.85  134.15     0      5.00e+00 4.00e-02 7.20e+02
  dihedral model="   1" pdb=" CA  PRO A 117 "
           model="   1" pdb=" C   PRO A 117 "
           model="   1" pdb=" N   ASP A 118 "
           model="   1" pdb=" CA  ASP A 118 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  135.52   44.48     0      5.00e+00 4.00e-02 7.91e+01
  dihedral model="   1" pdb=" N   TYR A  81 "
           model="   1" pdb=" C   TYR A  81 "
           model="   1" pdb=" CA  TYR A  81 "
           model="   1" pdb=" CB  TYR A  81 "
      ideal   model   delta  harmonic     sigma   weight residual
     122.80  143.18  -20.38     0      2.50e+00 1.60e-01 6.64e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.000 -    0.182: 161
       0.182 -    0.364: 10
       0.364 -    0.546: 2
       0.546 -    0.728: 2
        Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 69
        1.23 -     1.43: 394
        1.43 -     1.63: 668
        1.63 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" CE1 HIS A 139 "
       model="   1" pdb=" NE2 HIS A 139 "
    ideal  model  delta    sigma   weight residual
    1.321  1.353 -0.032 1.00e-02 1.00e+04 9.97e+00
  bond model="   1" pdb=" CE1 HIS A 137 "
       model="   1" pdb=" NE2 HIS A 137 "
    ideal  model  delta    sigma   weight residual
    1.321  1.353 -0.032 1.00e-02 1.00e+04 9.95e+00
  bond model="   1" pdb=" CE1 HIS A 135 "
       model="   1" pdb=" NE2 HIS A 135 "
    ideal  model  delta    sigma   weight residual
    1.321  1.352 -0.031 1.00e-02 1.00e+04 9.76e+00
  bond model="   1" pdb=" CD  ARG A  21 "
       model="   1" pdb=" NE  ARG A  21 "
    ideal  model  delta    sigma   weight residual
    1.458  1.501 -0.043 1.40e-02 5.10e+03 9.64e+00
  bond model="   1" pdb=" CD  ARG A 127 "
       model="   1" pdb=" NE  ARG A 127 "
    ideal  model  delta    sigma   weight residual
    1.458  1.501 -0.043 1.40e-02 5.10e+03 9.52e+00
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       96.45 -   103.52: 23
      103.52 -   110.58: 2221
      110.58 -   117.64: 862
      117.64 -   124.71: 886
      124.71 -   131.77: 85
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" CA  ILE A  51 "
        model="   1" pdb=" C   ILE A  51 "
        model="   1" pdb=" N   PRO A  52 "
      ideal   model   delta    sigma   weight residual
     116.90  127.00  -10.10 1.50e+00 4.44e-01 4.54e+01
  angle model="   1" pdb=" CA  ILE A  78 "
        model="   1" pdb=" CB  ILE A  78 "
        model="   1" pdb=" CG1 ILE A  78 "
      ideal   model   delta    sigma   weight residual
     110.40  119.66   -9.26 1.70e+00 3.46e-01 2.96e+01
  angle model="   1" pdb=" CA  LYS A 113 "
        model="   1" pdb=" C   LYS A 113 "
        model="   1" pdb=" N   PRO A 114 "
      ideal   model   delta    sigma   weight residual
     116.90  124.77   -7.87 1.50e+00 4.44e-01 2.75e+01
  angle model="   1" pdb=" CA  ASP A  95 "
        model="   1" pdb=" CB  ASP A  95 "
        model="   1" pdb=" CG  ASP A  95 "
      ideal   model   delta    sigma   weight residual
     112.60  117.82   -5.22 1.00e+00 1.00e+00 2.72e+01
  angle model="   1" pdb=" CA  ASP A  88 "
        model="   1" pdb=" CB  ASP A  88 "
        model="   1" pdb=" CG  ASP A  88 "
      ideal   model   delta    sigma   weight residual
     112.60  107.47    5.13 1.00e+00 1.00e+00 2.63e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    13.35: 966
       13.35 -    26.70: 48
       26.70 -    40.06: 12
       40.06 -    53.41: 4
       53.41 -    66.76: 2
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" C   ASP A  88 "
           model="   1" pdb=" N   ASP A  88 "
           model="   1" pdb=" CA  ASP A  88 "
           model="   1" pdb=" CB  ASP A  88 "
      ideal   model   delta  harmonic     sigma   weight residual
    -122.60 -147.53   24.93     0      2.50e+00 1.60e-01 9.94e+01
  dihedral model="   1" pdb=" N   ASP A  88 "
           model="   1" pdb=" C   ASP A  88 "
           model="   1" pdb=" CA  ASP A  88 "
           model="   1" pdb=" CB  ASP A  88 "
      ideal   model   delta  harmonic     sigma   weight residual
     122.80  146.21  -23.41     0      2.50e+00 1.60e-01 8.76e+01
  dihedral model="   1" pdb=" N   GLU A  49 "
           model="   1" pdb=" C   GLU A  49 "
           model="   1" pdb=" CA  GLU A  49 "
           model="   1" pdb=" CB  GLU A  49 "
      ideal   model   delta  harmonic     sigma   weight residual
     122.80  138.56  -15.76     0      2.50e+00 1.60e-01 3.98e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.000 -    0.213: 170
       0.213 -    0.426: 3
       0.426 -    0.639: 2
       0.639 -    0.852: 0
       0.852 -    1.065: 1
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  ASP A  88 "
            model="   1" pdb=" N   ASP A  88 "
            model="   1" pdb=" C   ASP A  88 "
            model="   1" pdb=" CB  ASP A  88 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    1.45    1.07 2.00e-01 2.50e+01 2.84e+01
  chirality model="   1" pdb=" CA  GLU A  49 "
            model="   1" pdb=" N   GLU A  49 "
            model="   1" pdb=" C   GLU A  49 "
            model="   1" pdb=" CB  GLU A  49 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    1.88    0.63 2.00e-01 2.50e+01 9.80e+00
  chirality model="   1" pdb=" CA  ASP A  95 "
            model="   1" pdb=" N   ASP A  95 "
            model="   1" pdb=" C   ASP A  95 "
            model="   1" pdb=" CB  ASP A  95 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.06    0.45 2.00e-01 2.50e+01 4.98e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A 105 "    0.093 2.00e-02 2.50e+03   4.39e-02 5.77e+01
        model="   1" pdb=" CG  TYR A 105 "   -0.001 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A 105 "   -0.012 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A 105 "   -0.024 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A 105 "   -0.022 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A 105 "   -0.008 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A 105 "    0.012 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A 105 "    0.087 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A 105 "   -0.013 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A 105 "   -0.052 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A 105 "   -0.051 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A 105 "   -0.010 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  81 "   -0.095 2.00e-02 2.50e+03   4.24e-02 5.40e+01
        model="   1" pdb=" CG  TYR A  81 "    0.001 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  81 "    0.022 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  81 "    0.016 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  81 "    0.013 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  81 "    0.017 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  81 "   -0.006 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  81 "   -0.087 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  81 "    0.042 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  81 "    0.025 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  81 "    0.019 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  81 "    0.033 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  PHE A  45 "    0.006 2.00e-02 2.50e+03   2.72e-02 2.22e+01
        model="   1" pdb=" CG  PHE A  45 "   -0.051 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 PHE A  45 "   -0.014 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 PHE A  45 "    0.004 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 PHE A  45 "    0.015 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 PHE A  45 "   -0.002 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  PHE A  45 "   -0.010 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 PHE A  45 "   -0.008 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 PHE A  45 "    0.044 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 PHE A  45 "    0.051 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 PHE A  45 "   -0.001 2.00e-02 2.50e+03
        model="   1" pdb=" HZ  PHE A  45 "   -0.032 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.66 -     2.25: 183
        2.25 -     2.83: 4605
 0.728 -    0.910: 1
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  TYR A  81 "
            model="   1" pdb=" N   TYR A  81 "
            model="   1" pdb=" C   TYR A  81 "
            model="   1" pdb=" CB  TYR A  81 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    1.60    0.91 2.00e-01 2.50e+01 2.07e+01
  chirality model="   1" pdb=" CA  HIS A 138 "
            model="   1" pdb=" N   HIS A 138 "
            model="   1" pdb=" C   HIS A 138 "
            model="   1" pdb=" CB  HIS A 138 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    1.88    0.63 2.00e-01 2.50e+01 1.00e+01
  chirality model="   1" pdb=" CA  PRO A 114 "
            model="   1" pdb=" N   PRO A 114 "
            model="   1" pdb=" C   PRO A 114 "
            model="   1" pdb=" CB  PRO A 114 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.72    2.15    0.57 2.00e-01 2.50e+01 8.16e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  HIS A 135 "    0.112 2.00e-02 2.50e+03   6.65e-02 8.83e+01
        model="   1" pdb=" CG  HIS A 135 "   -0.097 2.00e-02 2.50e+03
        model="   1" pdb=" ND1 HIS A 135 "   -0.089 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 HIS A 135 "   -0.019 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 HIS A 135 "    0.010 2.00e-02 2.50e+03
        model="   1" pdb=" NE2 HIS A 135 "    0.050 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 HIS A 135 "   -0.014 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 HIS A 135 "    0.047 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  50 "   -0.059 2.00e-02 2.50e+03   5.42e-02 8.81e+01
        model="   1" pdb=" CG  TYR A  50 "    0.055 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  50 "   -0.002 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  50 "    0.043 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  50 "    0.013 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  50 "   -0.032 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  50 "    0.026 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  50 "    0.028 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  50 "   -0.049 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  50 "    0.085 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  50 "    0.014 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  50 "   -0.121 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  HIS A 137 "    0.106 2.00e-02 2.50e+03   6.30e-02 7.95e+01
        model="   1" pdb=" CG  HIS A 137 "   -0.093 2.00e-02 2.50e+03
        model="   1" pdb=" ND1 HIS A 137 "   -0.084 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 HIS A 137 "   -0.018 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 HIS A 137 "    0.009 2.00e-02 2.50e+03
        model="   1" pdb=" NE2 HIS A 137 "    0.047 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 HIS A 137 "   -0.013 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 HIS A 137 "    0.045 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.50 -     2.12: 62
        2.12 -     2.74: 3750
        2.74 -     3.36: 5675
        3.36 -     3.98: 6580
        3.98 -     4.60: 9898
  Nonbonded interactions: 25965
  Sorted by model distance:
  nonbonded model="   1" pdb="HG22 ILE A  86 "
            model="   1" pdb=" H   GLY A  87 "
     model   vdw
     1.503 2.270
  nonbonded model="   1" pdb="HG23 ILE A  38 "
            model="   1" pdb=" HB2 HIS A  43 "
     model   vdw
     1.845 2.440
  nonbonded model="   1" pdb=" OE1 GLU A  16 "
            model="   1" pdb=" HZ2 LYS A  19 "
     model   vdw
     1.852 1.850
  nonbonded model="   1" pdb=" HZ1 LYS A  10 "
            model="   1" pdb=" OD1 ASP A  23 "
     model   vdw
     1.863 1.850
  nonbonded model="   1" pdb=" H   TYR A  81 "
            model="   1" pdb=" HA  TYR A  81 "
     model   vdw
     1.880 1.816
  ... (remaining 25960 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.
        2.83 -     3.42: 5371
        3.42 -     4.01: 6642
        4.01 -     4.60: 9892
  Nonbonded interactions: 26693
  Sorted by model distance:
  nonbonded model="   1" pdb=" OE2 GLU A 123 "
            model="   1" pdb="HH21 ARG A 127 "
     model   vdw
     1.658 1.850
  nonbonded model="   1" pdb=" OE2 GLU A  55 "
            model="   1" pdb="HH21 ARG A  58 "
     model   vdw
     1.728 1.850
  nonbonded model="   1" pdb=" HB2 LEU A   3 "
            model="   1" pdb="HD22 LEU A  61 "
     model   vdw
     1.731 2.440
  nonbonded model="   1" pdb=" OE2 GLU A  16 "
            model="   1" pdb=" HZ2 LYS A  19 "
     model   vdw
     1.735 1.850
  nonbonded model="   1" pdb=" HB2 LYS A  40 "
            model="   1" pdb="HE22 GLN A 100 "
     model   vdw
     1.736 2.270
  ... (remaining 26688 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.
  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 128
        1.23 -     1.43: 345
        1.43 -     1.63: 658
        1.63 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" CA  ASP A 116 "
       model="   1" pdb=" C   ASP A 116 "
    ideal  model  delta    sigma   weight residual
    1.525  1.602 -0.077 2.10e-02 2.27e+03 1.35e+01
  bond model="   1" pdb=" CE1 HIS A 136 "
       model="   1" pdb=" NE2 HIS A 136 "
    ideal  model  delta    sigma   weight residual
    1.321  1.356 -0.035 1.00e-02 1.00e+04 1.24e+01
  bond model="   1" pdb=" CE1 HIS A 135 "
       model="   1" pdb=" NE2 HIS A 135 "
    ideal  model  delta    sigma   weight residual
    1.321  1.356 -0.035 1.00e-02 1.00e+04 1.22e+01
  bond model="   1" pdb=" CE1 HIS A 134 "
       model="   1" pdb=" NE2 HIS A 134 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.19e+01
  bond model="   1" pdb=" CE1 HIS A 139 "
       model="   1" pdb=" NE2 HIS A 139 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.18e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       91.51 -    99.82: 6
       99.82 -   108.14: 621
      108.14 -   116.46: 2393
      116.46 -   124.78: 979
      124.78 -   133.10: 78
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" N   PRO A 117 "
        model="   1" pdb=" CA  PRO A 117 "
        model="   1" pdb=" C   PRO A 117 "
      ideal   model   delta    sigma   weight residual
     112.10  130.01  -17.91 2.50e+00 1.60e-01 5.13e+01
  angle model="   1" pdb=" C   HIS A 137 "
        model="   1" pdb=" N   HIS A 138 "
        model="   1" pdb=" CA  HIS A 138 "
      ideal   model   delta    sigma   weight residual
     121.70  133.10  -11.40 1.80e+00 3.09e-01 4.01e+01
  angle model="   1" pdb=" C   PRO A 117 "
        model="   1" pdb=" CA  PRO A 117 "
        model="   1" pdb=" HA  PRO A 117 "
      ideal   model   delta    sigma   weight residual
     109.00   91.51   17.49 3.00e+00 1.11e-01 3.40e+01
  angle model="   1" pdb=" O   ASP A 116 "
        model="   1" pdb=" C   ASP A 116 "
        model="   1" pdb=" N   PRO A 117 "
      ideal   model   delta    sigma   weight residual
     123.00  114.24    8.76 1.60e+00 3.91e-01 3.00e+01
  angle model="   1" pdb=" CA  ASP A 116 "
        model="   1" pdb=" CB  ASP A 116 "
        model="   1" pdb=" CG  ASP A 116 "
      ideal   model   delta    sigma   weight residual
     112.60  117.92   -5.32 1.00e+00 1.00e+00 2.83e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    26.63: 1005
       26.63 -    53.25: 23
       53.25 -    79.88: 1
       79.88 -   106.51: 1
      106.51 -   133.14: 2
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" CA  HIS A 137 "
           model="   1" pdb=" C   HIS A 137 "
           model="   1" pdb=" N   HIS A 138 "
           model="   1" pdb=" CA  HIS A 138 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00   46.86  133.14     0      5.00e+00 4.00e-02 7.09e+02
  dihedral model="   1" pdb=" CA  HIS A 135 "
           model="   1" pdb=" C   HIS A 135 "
           model="   1" pdb=" N   HIS A 136 "
           model="   1" pdb=" CA  HIS A 136 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00   60.18  119.82     0      5.00e+00 4.00e-02 5.74e+02
  dihedral model="   1" pdb=" CA  HIS A 138 "
           model="   1" pdb=" C   HIS A 138 "
           model="   1" pdb=" N   HIS A 139 "
           model="   1" pdb=" CA  HIS A 139 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  138.05   41.95     0      5.00e+00 4.00e-02 7.04e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.001 -    0.141: 156
       0.141 -    0.282: 18
       0.282 -    0.422: 0
       0.422 -    0.563: 1
       0.563 -    0.704: 1
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  PRO A 117 "
            model="   1" pdb=" N   PRO A 117 "
            model="   1" pdb=" C   PRO A 117 "
            model="   1" pdb=" CB  PRO A 117 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.72    2.01    0.70 2.00e-01 2.50e+01 1.24e+01
  chirality model="   1" pdb=" CA  TYR A  81 "
            model="   1" pdb=" N   TYR A  81 "
            model="   1" pdb=" C   TYR A  81 "
            model="   1" pdb=" CB  TYR A  81 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.02    0.49 2.00e-01 2.50e+01 5.91e+00
  chirality model="   1" pdb=" CA  SER A  97 "
            model="   1" pdb=" N   SER A  97 "
            model="   1" pdb=" C   SER A  97 "
            model="   1" pdb=" CB  SER A  97 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.25    0.26 2.00e-01 2.50e+01 1.66e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  PHE A  15 "    0.345 2.00e-02 2.50e+03   1.73e-01 9.00e+02
        model="   1" pdb=" CG  PHE A  15 "    0.014 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 PHE A  15 "   -0.030 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 PHE A  15 "   -0.128 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 PHE A  15 "   -0.071 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 PHE A  15 "    0.020 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  PHE A  15 "    0.089 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 PHE A  15 "   -0.031 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 PHE A  15 "   -0.322 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 PHE A  15 "   -0.203 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 PHE A  15 "    0.073 2.00e-02 2.50e+03
        model="   1" pdb=" HZ  PHE A  15 "    0.244 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  12 "   -0.079 2.00e-02 2.50e+03   6.17e-02 1.14e+02
        model="   1" pdb=" CG  TYR A  12 "    0.000 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  12 "    0.041 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  12 "   -0.011 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  12 "   -0.014 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  12 "    0.040 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  12 "   -0.024 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  12 "   -0.077 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  12 "    0.105 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  12 "   -0.054 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  12 "   -0.044 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  12 "    0.116 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  HIS A 136 "    0.091 2.00e-02 2.50e+03   5.43e-02 5.90e+01
        model="   1" pdb=" CG  HIS A 136 "   -0.077 2.00e-02 2.50e+03
        model="   1" pdb=" ND1 HIS A 136 "   -0.074 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 HIS A 136 "   -0.016 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 HIS A 136 "    0.008 2.00e-02 2.50e+03
        model="   1" pdb=" NE2 HIS A 136 "    0.044 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 HIS A 136 "   -0.015 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 HIS A 136 "    0.037 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.66 -     2.25: 182
        2.25 -     2.84: 4674
        2.84 -     3.42: 5466
        3.42 -     4.01: 6439
        4.01 -     4.60: 9854
  Nonbonded interactions: 26615
  Sorted by model distance:
  nonbonded model="   1" pdb=" OD2 ASP A  47 "
            model="   1" pdb=" HZ1 LYS A 113 "
     model   vdw
     1.659 1.850
  nonbonded model="   1" pdb=" OD1 ASP A   7 "
            model="   1" pdb=" HZ2 LYS A  10 "
     model   vdw
     1.719 1.850
  nonbonded model="   1" pdb=" HB3 ASP A  36 "
            model="   1" pdb="HD21 LEU A  64 "
     model   vdw
     1.831 2.440
  nonbonded model="   1" pdb="HH11 ARG A  21 "
            model="   1" pdb=" OD1 ASN A  72 "
     model   vdw
     1.871 1.850
  nonbonded model="   1" pdb=" O   GLU A  55 "
            model="   1" pdb=" H   LEU A  59 "
     model   vdw
     1.888 1.850
  ... (remaining 26610 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.
  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 133
        1.23 -     1.43: 340
        1.43 -     1.63: 658
        1.63 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" CA  GLY A  96 "
       model="   1" pdb=" C   GLY A  96 "
    ideal  model  delta    sigma   weight residual
    1.516  1.444  0.072 1.80e-02 3.09e+03 1.60e+01
  bond model="   1" pdb=" CE1 HIS A  43 "
       model="   1" pdb=" NE2 HIS A  43 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.18e+01
  bond model="   1" pdb=" CE1 HIS A 134 "
       model="   1" pdb=" NE2 HIS A 134 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.14e+01
  bond model="   1" pdb=" CE1 HIS A 136 "
       model="   1" pdb=" NE2 HIS A 136 "
    ideal  model  delta    sigma   weight residual
    1.321  1.354 -0.033 1.00e-02 1.00e+04 1.10e+01
  bond model="   1" pdb=" CD  ARG A  58 "
       model="   1" pdb=" NE  ARG A  58 "
    ideal  model  delta    sigma   weight residual
    1.458  1.504 -0.046 1.40e-02 5.10e+03 1.10e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       95.91 -   102.95: 19
      102.95 -   109.99: 2098
      109.99 -   117.03: 946
      117.03 -   124.07: 881
      124.07 -   131.11: 133
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" CA  LYS A 113 "
        model="   1" pdb=" C   LYS A 113 "
        model="   1" pdb=" N   PRO A 114 "
      ideal   model   delta    sigma   weight residual
     116.90  124.86   -7.96 1.50e+00 4.44e-01 2.81e+01
  angle model="   1" pdb=" CA  ASP A  95 "
        model="   1" pdb=" CB  ASP A  95 "
        model="   1" pdb=" CG  ASP A  95 "
      ideal   model   delta    sigma   weight residual
     112.60  117.87   -5.27 1.00e+00 1.00e+00 2.78e+01
  angle model="   1" pdb=" CA  ASP A 116 "
        model="   1" pdb=" C   ASP A 116 "
        model="   1" pdb=" N   PRO A 117 "
      ideal   model   delta    sigma   weight residual
     116.90  124.60   -7.70 1.50e+00 4.44e-01 2.63e+01
  angle model="   1" pdb=" CA  LEU A  53 "
        model="   1" pdb=" C   LEU A  53 "
        model="   1" pdb=" N   PRO A  54 "
      ideal   model   delta    sigma   weight residual
     116.90  124.54   -7.64 1.50e+00 4.44e-01 2.59e+01
  angle model="   1" pdb=" N   SER A  97 "
        model="   1" pdb=" CA  SER A  97 "
        model="   1" pdb=" HA  SER A  97 "
      ideal   model   delta    sigma   weight residual
     110.00   95.91   14.09 3.00e+00 1.11e-01 2.21e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    14.84: 972
       14.84 -    29.69: 42
       29.69 -    44.53: 13
       44.53 -    59.37: 2
       59.37 -    74.22: 3
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" CA  HIS A 136 "
           model="   1" pdb=" C   HIS A 136 "
           model="   1" pdb=" N   HIS A 137 "
           model="   1" pdb=" CA  HIS A 137 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  116.16   63.84     0      5.00e+00 4.00e-02 1.63e+02
  dihedral model="   1" pdb=" CA  HIS A 135 "
           model="   1" pdb=" C   HIS A 135 "
           model="   1" pdb=" N   HIS A 136 "
           model="   1" pdb=" CA  HIS A 136 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  149.44   30.56     0      5.00e+00 4.00e-02 3.74e+01
  dihedral model="   1" pdb=" CA  ILE A 122 "
           model="   1" pdb=" C   ILE A 122 "
           model="   1" pdb=" N   GLU A 123 "
           model="   1" pdb=" CA  GLU A 123 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  151.12   28.88     0      5.00e+00 4.00e-02 3.34e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.000 -    0.113: 138
       0.113 -    0.226: 32
       0.226 -    0.339: 4
       0.339 -    0.451: 1
       0.451 -    0.564: 1
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  SER A  97 "
            model="   1" pdb=" N   SER A  97 "
            model="   1" pdb=" C   SER A  97 "
            model="   1" pdb=" CB  SER A  97 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    1.95    0.56 2.00e-01 2.50e+01 7.96e+00
  chirality model="   1" pdb=" CA  HIS A 136 "
            model="   1" pdb=" N   HIS A 136 "
            model="   1" pdb=" C   HIS A 136 "
            model="   1" pdb=" CB  HIS A 136 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.13    0.38 2.00e-01 2.50e+01 3.60e+00
  chirality model="   1" pdb=" CB  ILE A  78 "
            model="   1" pdb=" CA  ILE A  78 "
            model="   1" pdb=" CG1 ILE A  78 "
            model="   1" pdb=" CG2 ILE A  78 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.64    2.37    0.28 2.00e-01 2.50e+01 1.95e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  68 "   -0.213 2.00e-02 2.50e+03   1.20e-01 4.35e+02
        model="   1" pdb=" CG  TYR A  68 "    0.002 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  68 "    0.099 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  68 "    0.008 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  68 "   -0.059 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  68 "    0.031 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  68 "   -0.068 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  68 "   -0.023 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  68 "    0.270 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  68 "   -0.003 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  68 "   -0.155 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  68 "    0.111 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  91 "   -0.035 2.00e-02 2.50e+03   3.57e-02 3.82e+01
        model="   1" pdb=" CG  TYR A  91 "   -0.001 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  91 "    0.026 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  91 "   -0.009 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  91 "   -0.018 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  91 "    0.018 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  91 "   -0.006 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  91 "   -0.013 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  91 "    0.074 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  91 "   -0.033 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  91 "   -0.055 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  91 "    0.053 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A 111 "    0.028 2.00e-02 2.50e+03   3.04e-02 2.77e+01
        model="   1" pdb=" CG  TYR A 111 "    0.021 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A 111 "   -0.002 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A 111 "   -0.000 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A 111 "   -0.015 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A 111 "   -0.017 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A 111 "    0.012 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A 111 "    0.073 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A 111 "   -0.009 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A 111 "   -0.003 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A 111 "   -0.041 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A 111 "   -0.047 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.55 -     2.16: 89
        2.16 -     2.77: 4167
        2.77 -     3.38: 5725
        3.38 -     3.99: 6912
        3.99 -     4.60: 10588
  Nonbonded interactions: 27481
  Sorted by model distance:
  nonbonded model="   1" pdb=" H   ILE A  77 "
            model="   1" pdb="HG13 ILE A  77 "
     model   vdw
     1.551 2.270
  nonbonded model="   1" pdb=" HZ1 LYS A  10 "
            model="   1" pdb=" OD1 ASP A  23 "
     model   vdw
     1.742 1.850
  nonbonded model="   1" pdb="HE21 GLN A 100 "
            model="   1" pdb="HG12 VAL A 104 "
     model   vdw
     1.805 2.270
  nonbonded model="   1" pdb="HG23 VAL A  41 "
            model="   1" pdb=" H   HIS A  43 "
     model   vdw
     1.862 2.270
  nonbonded model="   1" pdb=" HZ3 LYS A  40 "
            model="   1" pdb=" OD1 ASP A 118 "
     model   vdw
     1.893 1.850
  ... (remaining 27476 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 0.98
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 1.10 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 116
        1.23 -     1.43: 347
        1.43 -     1.62: 668
        1.62 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" CE1 HIS A 136 "
       model="   1" pdb=" NE2 HIS A 136 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.18e+01
  bond model="   1" pdb=" CE1 HIS A 135 "
       model="   1" pdb=" NE2 HIS A 135 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.16e+01
  bond model="   1" pdb=" CE1 HIS A 138 "
       model="   1" pdb=" NE2 HIS A 138 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.15e+01
  bond model="   1" pdb=" CE1 HIS A 134 "
       model="   1" pdb=" NE2 HIS A 134 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.14e+01
  bond model="   1" pdb=" CE1 HIS A 137 "
       model="   1" pdb=" NE2 HIS A 137 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.13e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       92.11 -    99.88: 6
       99.88 -   107.66: 520
      107.66 -   115.44: 2435
      115.44 -   123.21: 901
      123.21 -   130.99: 215
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" N   PRO A 114 "
        model="   1" pdb=" CA  PRO A 114 "
        model="   1" pdb=" C   PRO A 114 "
      ideal   model   delta    sigma   weight residual
     112.10  129.93  -17.83 2.50e+00 1.60e-01 5.09e+01
  angle model="   1" pdb=" CA  ASP A  88 "
        model="   1" pdb=" CB  ASP A  88 "
        model="   1" pdb=" CG  ASP A  88 "
      ideal   model   delta    sigma   weight residual
     112.60  119.55   -6.95 1.00e+00 1.00e+00 4.83e+01
  angle model="   1" pdb=" CA  LYS A 113 "
        model="   1" pdb=" C   LYS A 113 "
        model="   1" pdb=" N   PRO A 114 "
      ideal   model   delta    sigma   weight residual
     116.90  127.26  -10.36 1.50e+00 4.44e-01 4.77e+01
  angle model="   1" pdb=" CA  PHE A  15 "
        model="   1" pdb=" CB  PHE A  15 "
        model="   1" pdb=" CG  PHE A  15 "
      ideal   model   delta    sigma   weight residual
     113.80  108.16    5.64 1.00e+00 1.00e+00 3.18e+01
  angle model="   1" pdb=" C   PRO A 114 "
        model="   1" pdb=" CA  PRO A 114 "
        model="   1" pdb=" HA  PRO A 114 "
      ideal   model   delta    sigma   weight residual
     109.00   92.11   16.89 3.00e+00 1.11e-01 3.17e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    12.76: 954
       12.76 -    25.53: 59
       25.53 -    38.29: 12
       38.29 -    51.05: 3
       51.05 -    63.81: 4
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" N   ASP A  95 "
           model="   1" pdb=" C   ASP A  95 "
           model="   1" pdb=" CA  ASP A  95 "
           model="   1" pdb=" CB  ASP A  95 "
      ideal   model   delta  harmonic     sigma   weight residual
     122.80  136.91  -14.11     0      2.50e+00 1.60e-01 3.19e+01
  dihedral model="   1" pdb=" N   PRO A 114 "
           model="   1" pdb=" C   PRO A 114 "
           model="   1" pdb=" CA  PRO A 114 "
           model="   1" pdb=" CB  PRO A 114 "
      ideal   model   delta  harmonic     sigma   weight residual
     115.10  128.44  -13.34     0      2.50e+00 1.60e-01 2.85e+01
  dihedral model="   1" pdb=" C   ASP A  95 "
           model="   1" pdb=" N   ASP A  95 "
           model="   1" pdb=" CA  ASP A  95 "
           model="   1" pdb=" CB  ASP A  95 "
      ideal   model   delta  harmonic     sigma   weight residual
    -122.60 -134.66   12.06     0      2.50e+00 1.60e-01 2.33e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.000 -    0.138: 147
       0.138 -    0.275: 24
       0.275 -    0.413: 3
       0.413 -    0.550: 1
       0.550 -    0.688: 1
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  PRO A 114 "
            model="   1" pdb=" N   PRO A 114 "
            model="   1" pdb=" C   PRO A 114 "
            model="   1" pdb=" CB  PRO A 114 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.72    2.03    0.69 2.00e-01 2.50e+01 1.18e+01
  chirality model="   1" pdb=" CA  ASP A  95 "
            model="   1" pdb=" N   ASP A  95 "
            model="   1" pdb=" C   ASP A  95 "
            model="   1" pdb=" CB  ASP A  95 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    1.99    0.52 2.00e-01 2.50e+01 6.87e+00
  chirality model="   1" pdb=" CA  ASP A  74 "
            model="   1" pdb=" N   ASP A  74 "
            model="   1" pdb=" C   ASP A  74 "
            model="   1" pdb=" CB  ASP A  74 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.13    0.38 2.00e-01 2.50e+01 3.60e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  PHE A  15 "    0.261 2.00e-02 2.50e+03   1.30e-01 5.09e+02
        model="   1" pdb=" CG  PHE A  15 "    0.033 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 PHE A  15 "   -0.089 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 PHE A  15 "   -0.028 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 PHE A  15 "    0.013 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 PHE A  15 "   -0.052 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  PHE A  15 "    0.067 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 PHE A  15 "   -0.240 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 PHE A  15 "   -0.052 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 PHE A  15 "    0.044 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 PHE A  15 "   -0.145 2.00e-02 2.50e+03
        model="   1" pdb=" HZ  PHE A  15 "    0.187 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A 105 "   -0.076 2.00e-02 2.50e+03   5.30e-02 8.42e+01
        model="   1" pdb=" CG  TYR A 105 "   -0.035 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A 105 "    0.037 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A 105 "   -0.005 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A 105 "   -0.021 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A 105 "    0.020 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A 105 "   -0.026 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A 105 "   -0.028 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A 105 "    0.125 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A 105 "    0.000 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A 105 "   -0.057 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A 105 "    0.066 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  PHE A  45 "    0.057 2.00e-02 2.50e+03   3.51e-02 3.69e+01
        model="   1" pdb=" CG  PHE A  45 "   -0.033 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 PHE A  45 "   -0.005 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 PHE A  45 "   -0.030 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 PHE A  45 "   -0.005 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 PHE A  45 "    0.020 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  PHE A  45 "   -0.003 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 PHE A  45 "    0.014 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 PHE A  45 "   -0.062 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 PHE A  45 "   -0.007 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 PHE A  45 "    0.069 2.00e-02 2.50e+03
        model="   1" pdb=" HZ  PHE A  45 "   -0.017 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.75 -     2.32: 438
        2.32 -     2.89: 5090
        2.89 -     3.46: 5191
        3.46 -     4.03: 6725
        4.03 -     4.60: 9935
  Nonbonded interactions: 27379
  Sorted by model distance:
  nonbonded model="   1" pdb=" OE2 GLU A  55 "
            model="   1" pdb="HH21 ARG A  58 "
     model   vdw
     1.750 1.850
  nonbonded model="   1" pdb=" HB2 LEU A   3 "
            model="   1" pdb="HD22 LEU A  61 "
     model   vdw
     1.767 2.440
  nonbonded model="   1" pdb=" OE1 GLU A  55 "
            model="   1" pdb=" HE  ARG A  58 "
     model   vdw
     1.770 1.850
  nonbonded model="   1" pdb=" OD2 ASP A  88 "
            model="   1" pdb=" HZ3 LYS A 101 "
     model   vdw
     1.815 1.850
  nonbonded model="   1" pdb=" O   LYS A 113 "
            model="   1" pdb=" H   ALA A 115 "
     model   vdw
     1.854 1.850
  ... (remaining 27374 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.
  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 124
        1.23 -     1.43: 343
        1.43 -     1.63: 664
        1.63 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" CE1 HIS A 139 "
       model="   1" pdb=" NE2 HIS A 139 "
    ideal  model  delta    sigma   weight residual
    1.321  1.356 -0.035 1.00e-02 1.00e+04 1.20e+01
  bond model="   1" pdb=" CE1 HIS A 136 "
       model="   1" pdb=" NE2 HIS A 136 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.19e+01
  bond model="   1" pdb=" CZ  ARG A  58 "
       model="   1" pdb=" NH2 ARG A  58 "
    ideal  model  delta    sigma   weight residual
    1.330  1.286  0.044 1.30e-02 5.92e+03 1.17e+01
  bond model="   1" pdb=" CE1 HIS A 135 "
       model="   1" pdb=" NE2 HIS A 135 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.17e+01
  bond model="   1" pdb=" CE1 HIS A 134 "
       model="   1" pdb=" NE2 HIS A 134 "
    ideal  model  delta    sigma   weight residual
    1.321  1.354 -0.033 1.00e-02 1.00e+04 1.11e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       97.05 -   103.94: 47
      103.94 -   110.82: 2226
      110.82 -   117.71: 822
      117.71 -   124.59: 904
      124.59 -   131.48: 78
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" CA  ASP A  23 "
        model="   1" pdb=" CB  ASP A  23 "
        model="   1" pdb=" CG  ASP A  23 "
      ideal   model   delta    sigma   weight residual
     112.60  107.59    5.01 1.00e+00 1.00e+00 2.51e+01
  angle model="   1" pdb=" CA  LYS A 113 "
        model="   1" pdb=" C   LYS A 113 "
        model="   1" pdb=" N   PRO A 114 "
      ideal   model   delta    sigma   weight residual
     116.90  123.89   -6.99 1.50e+00 4.44e-01 2.17e+01
  angle model="   1" pdb=" ND1 HIS A 137 "
        model="   1" pdb=" CG  HIS A 137 "
        model="   1" pdb=" CD2 HIS A 137 "
      ideal   model   delta    sigma   weight residual
     106.10  110.42   -4.32 1.00e+00 1.00e+00 1.87e+01
  angle model="   1" pdb=" N   SER A  98 "
        model="   1" pdb=" CA  SER A  98 "
        model="   1" pdb=" HA  SER A  98 "
      ideal   model   delta    sigma   weight residual
     110.00   97.05   12.95 3.00e+00 1.11e-01 1.86e+01
  angle model="   1" pdb=" ND1 HIS A 139 "
        model="   1" pdb=" CG  HIS A 139 "
        model="   1" pdb=" CD2 HIS A 139 "
      ideal   model   delta    sigma   weight residual
     106.10  110.39   -4.29 1.00e+00 1.00e+00 1.84e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    17.21: 978
       17.21 -    34.41: 38
       34.41 -    51.62: 11
       51.62 -    68.83: 4
       68.83 -    86.03: 1
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" C   ILE A  78 "
           model="   1" pdb=" N   ILE A  78 "
           model="   1" pdb=" CA  ILE A  78 "
           model="   1" pdb=" CB  ILE A  78 "
      ideal   model   delta  harmonic     sigma   weight residual
    -122.00 -133.66   11.66     0      2.50e+00 1.60e-01 2.18e+01
  dihedral model="   1" pdb=" C   ILE A  86 "
           model="   1" pdb=" N   ILE A  86 "
           model="   1" pdb=" CA  ILE A  86 "
           model="   1" pdb=" CB  ILE A  86 "
      ideal   model   delta  harmonic     sigma   weight residual
    -122.00 -133.11   11.11     0      2.50e+00 1.60e-01 1.98e+01
  dihedral model="   1" pdb=" N   ILE A  78 "
           model="   1" pdb=" C   ILE A  78 "
           model="   1" pdb=" CA  ILE A  78 "
           model="   1" pdb=" CB  ILE A  78 "
      ideal   model   delta  harmonic     sigma   weight residual
     123.40  134.12  -10.72     0      2.50e+00 1.60e-01 1.84e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.000 -    0.090: 113
       0.090 -    0.180: 47
       0.180 -    0.269: 7
       0.269 -    0.359: 7
       0.359 -    0.448: 2
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  SER A  98 "
            model="   1" pdb=" N   SER A  98 "
            model="   1" pdb=" C   SER A  98 "
            model="   1" pdb=" CB  SER A  98 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.06    0.45 2.00e-01 2.50e+01 5.02e+00
  chirality model="   1" pdb=" CA  ILE A  78 "
            model="   1" pdb=" N   ILE A  78 "
            model="   1" pdb=" C   ILE A  78 "
            model="   1" pdb=" CB  ILE A  78 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.43    2.00    0.43 2.00e-01 2.50e+01 4.65e+00
  chirality model="   1" pdb=" CA  GLU A  75 "
            model="   1" pdb=" N   GLU A  75 "
            model="   1" pdb=" C   GLU A  75 "
            model="   1" pdb=" CB  GLU A  75 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.15    0.36 2.00e-01 2.50e+01 3.19e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  89 "    0.122 2.00e-02 2.50e+03   1.01e-01 3.07e+02
        model="   1" pdb=" CG  TYR A  89 "    0.062 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  89 "   -0.004 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  89 "   -0.021 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  89 "   -0.064 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  89 "   -0.047 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  89 "   -0.006 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  89 "    0.256 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  89 "   -0.008 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  89 "   -0.058 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  89 "   -0.141 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  89 "   -0.090 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  PHE A  45 "   -0.145 2.00e-02 2.50e+03   5.56e-02 9.27e+01
        model="   1" pdb=" CG  PHE A  45 "    0.038 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 PHE A  45 "    0.038 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 PHE A  45 "    0.036 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 PHE A  45 "    0.001 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 PHE A  45 "    0.005 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  PHE A  45 "   -0.026 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 PHE A  45 "    0.062 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 PHE A  45 "    0.055 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 PHE A  45 "   -0.006 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 PHE A  45 "    0.006 2.00e-02 2.50e+03
        model="   1" pdb=" HZ  PHE A  45 "   -0.064 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A 111 "    0.112 2.00e-02 2.50e+03   5.14e-02 7.93e+01
        model="   1" pdb=" CG  TYR A 111 "   -0.018 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A 111 "   -0.015 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A 111 "   -0.031 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A 111 "   -0.029 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A 111 "   -0.009 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A 111 "   -0.006 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A 111 "    0.105 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A 111 "   -0.003 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A 111 "   -0.055 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A 111 "   -0.052 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A 111 "    0.003 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.76 -     2.33: 521
        2.33 -     2.90: 509
  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 1.10
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 1.23 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

6
        2.90 -     3.47: 5144
        3.47 -     4.03: 6649
        4.03 -     4.60: 9685
  Nonbonded interactions: 27095
  Sorted by model distance:
  nonbonded model="   1" pdb="HD11 LEU A   9 "
            model="   1" pdb="HD13 ILE A  30 "
     model   vdw
     1.764 2.440
  nonbonded model="   1" pdb="HH21 ARG A  58 "
            model="   1" pdb="HD12 LEU A  61 "
     model   vdw
     1.767 2.270
  nonbonded model="   1" pdb=" OE1 GLU A  84 "
            model="   1" pdb=" HH  TYR A  89 "
     model   vdw
     1.771 1.850
  nonbonded model="   1" pdb="HD23 LEU A   2 "
            model="   1" pdb="HG23 ILE A  30 "
     model   vdw
     1.802 2.440
  nonbonded model="   1" pdb="HG22 ILE A  86 "
            model="   1" pdb=" H   GLY A  87 "
     model   vdw
     1.809 2.270
  ... (remaining 27090 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.
  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 133
        1.23 -     1.43: 336
        1.43 -     1.63: 662
        1.63 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" CE1 HIS A  43 "
       model="   1" pdb=" NE2 HIS A  43 "
    ideal  model  delta    sigma   weight residual
    1.321  1.363 -0.042 1.00e-02 1.00e+04 1.75e+01
  bond model="   1" pdb=" CB  HIS A  43 "
       model="   1" pdb=" CG  HIS A  43 "
    ideal  model  delta    sigma   weight residual
    1.497  1.445  0.052 1.40e-02 5.10e+03 1.38e+01
  bond model="   1" pdb=" CD  ARG A 129 "
       model="   1" pdb=" NE  ARG A 129 "
    ideal  model  delta    sigma   weight residual
    1.458  1.507 -0.049 1.40e-02 5.10e+03 1.22e+01
  bond model="   1" pdb=" CE1 HIS A 134 "
       model="   1" pdb=" NE2 HIS A 134 "
    ideal  model  delta    sigma   weight residual
    1.321  1.356 -0.035 1.00e-02 1.00e+04 1.22e+01
  bond model="   1" pdb=" CE1 HIS A 135 "
       model="   1" pdb=" NE2 HIS A 135 "
    ideal  model  delta    sigma   weight residual
    1.321  1.356 -0.035 1.00e-02 1.00e+04 1.20e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       94.81 -   102.10: 21
      102.10 -   109.39: 1154
      109.39 -   116.68: 1857
      116.68 -   123.97: 894
      123.97 -   131.26: 151
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" CA  ILE A  30 "
        model="   1" pdb=" CB  ILE A  30 "
        model="   1" pdb=" CG1 ILE A  30 "
      ideal   model   delta    sigma   weight residual
     110.40  121.25  -10.85 1.70e+00 3.46e-01 4.07e+01
  angle model="   1" pdb=" C   HIS A  43 "
        model="   1" pdb=" CA  HIS A  43 "
        model="   1" pdb=" CB  HIS A  43 "
      ideal   model   delta    sigma   weight residual
     110.10   98.46   11.64 1.90e+00 2.77e-01 3.75e+01
  angle model="   1" pdb=" N   PRO A 114 "
        model="   1" pdb=" CA  PRO A 114 "
        model="   1" pdb=" C   PRO A 114 "
      ideal   model   delta    sigma   weight residual
     112.10  126.93  -14.83 2.50e+00 1.60e-01 3.52e+01
  angle model="   1" pdb=" CA  ASP A  47 "
        model="   1" pdb=" CB  ASP A  47 "
        model="   1" pdb=" CG  ASP A  47 "
      ideal   model   delta    sigma   weight residual
     112.60  106.75    5.85 1.00e+00 1.00e+00 3.42e+01
  angle model="   1" pdb=" ND1 HIS A  43 "
        model="   1" pdb=" CG  HIS A  43 "
        model="   1" pdb=" CD2 HIS A  43 "
      ideal   model   delta    sigma   weight residual
     106.10  111.57   -5.47 1.00e+00 1.00e+00 3.00e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    11.44: 915
       11.44 -    22.88: 80
       22.88 -    34.32: 23
       34.32 -    45.77: 7
       45.77 -    57.21: 7
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" CA  HIS A 137 "
           model="   1" pdb=" C   HIS A 137 "
           model="   1" pdb=" N   HIS A 138 "
           model="   1" pdb=" CA  HIS A 138 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  122.79   57.21     0      5.00e+00 4.00e-02 1.31e+02
  dihedral model="   1" pdb=" CA  LEU A 119 "
           model="   1" pdb=" C   LEU A 119 "
           model="   1" pdb=" N   GLU A 120 "
           model="   1" pdb=" CA  GLU A 120 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  140.45   39.55     0      5.00e+00 4.00e-02 6.26e+01
  dihedral model="   1" pdb=" CA  HIS A 134 "
           model="   1" pdb=" C   HIS A 134 "
           model="   1" pdb=" N   HIS A 135 "
           model="   1" pdb=" CA  HIS A 135 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  150.11   29.89     0      5.00e+00 4.00e-02 3.57e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.001 -    0.145: 147
       0.145 -    0.290: 22
       0.290 -    0.435: 4
       0.435 -    0.580: 2
       0.580 -    0.725: 1
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  PRO A 114 "
            model="   1" pdb=" N   PRO A 114 "
            model="   1" pdb=" C   PRO A 114 "
            model="   1" pdb=" CB  PRO A 114 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.72    1.99    0.72 2.00e-01 2.50e+01 1.31e+01
  chirality model="   1" pdb=" CA  HIS A 135 "
            model="   1" pdb=" N   HIS A 135 "
            model="   1" pdb=" C   HIS A 135 "
            model="   1" pdb=" CB  HIS A 135 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    1.98    0.53 2.00e-01 2.50e+01 7.10e+00
  chirality model="   1" pdb=" CA  HIS A 138 "
            model="   1" pdb=" N   HIS A 138 "
            model="   1" pdb=" C   HIS A 138 "
            model="   1" pdb=" CB  HIS A 138 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.05    0.46 2.00e-01 2.50e+01 5.27e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  HIS A  43 "   -0.176 2.00e-02 2.50e+03   1.02e-01 2.10e+02
        model="   1" pdb=" CG  HIS A  43 "    0.150 2.00e-02 2.50e+03
        model="   1" pdb=" ND1 HIS A  43 "    0.133 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 HIS A  43 "    0.032 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 HIS A  43 "   -0.015 2.00e-02 2.50e+03
        model="   1" pdb=" NE2 HIS A  43 "   -0.076 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 HIS A  43 "    0.024 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 HIS A  43 "   -0.071 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  81 "   -0.062 2.00e-02 2.50e+03   6.57e-02 1.30e+02
        model="   1" pdb=" CG  TYR A  81 "   -0.038 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  81 "    0.036 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  81 "   -0.018 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  81 "   -0.020 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  81 "    0.039 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  81 "   -0.046 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  81 "   -0.065 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  81 "    0.123 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  81 "   -0.044 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  81 "   -0.039 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  81 "    0.134 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  68 "    0.126 2.00e-02 2.50e+03   6.22e-02 1.16e+02
        model="   1" pdb=" CG  TYR A  68 "    0.004 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  68 "   -0.022 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  68 "   -0.024 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  68 "   -0.026 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  68 "   -0.026 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  68 "    0.009 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  68 "    0.140 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  68 "   -0.038 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  68 "   -0.041 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  68 "   -0.051 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  68 "   -0.051 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.75 -     2.32: 425
        2.32 -     2.89: 5080
        2.89 -     3.46: 5157
        3.46 -     4.03: 6728
        4.03 -     4.60: 9783
  Nonbonded interactions: 27173
  Sorted by model distance:
  nonbonded model="   1" pdb=" OD2 ASP A  36 "
            model="   1" pdb=" HH  TYR A  68 "
     model   vdw
     1.749 1.850
  nonbonded model="   1" pdb=" HH  TYR A  12 "
            model="   1" pdb=" OE2 GLU A  55 "
     model   vdw
     1.757 1.850
  nonbonded model="   1" pdb=" HG2 LYS A 113 "
            model="   1" pdb=" HD2 PRO A 114 "
     model   vdw
     1.801 2.440
  nonbonded model="   1" pdb="HG23 ILE A  30 "
            model="   1" pdb="HD21 LEU A  61 "
     model   vdw
     1.819 2.440
  nonbonded model="   1" pdb=" HD2 TYR A  12 "
            model="   1" pdb=" H   VAL A  14 "
     model   vdw
     1.853 2.100
  ... (remaining 27168 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.
  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 115
        1.23 -     1.43: 352
        1.43 -     1.63: 664
        1.63 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" CE1 HIS A 134 "
       model="   1" pdb=" NE2 HIS A 134 "
    ideal  model  delta    sigma   weight residual
    1.321  1.357 -0.036 1.00e-02 1.00e+04 1.32e+01
  bond model="   1" pdb=" CE1 HIS A 139 "
       model="   1" pdb=" NE2 HIS A 139 "
    ideal  model  delta    sigma   weight residual
    1.321  1.357 -0.036 1.00e-02 1.00e+04 1.31e+01
  bond model="   1" pdb=" CE1 HIS A 137 "
       model="   1" pdb=" NE2 HIS A 137 "
    ideal  model  delta    sigma   weight residual
    1.321  1.357 -0.036 1.00e-02 1.00e+04 1.27e+01
  bond model="   1" pdb=" CE1 HIS A 135 "
       model="   1" pdb=" NE2 HIS A 135 "
    ideal  model  delta    sigma   weight residual
    1.321  1.357 -0.036 1.00e-02 1.00e+04 1.27e+01
  bond model="   1" pdb=" CE1 HIS A 138 "
       model="   1" pdb=" NE2 HIS A 138 "
    ideal  model  delta    sigma   weight residual
    1.321  1.357 -0.036 1.00e-02 1.00e+04 1.27e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       96.86 -   103.81: 40
      103.81 -   110.76: 2232
      110.76 -   117.71: 836
      117.71 -   124.66: 891
      124.66 -   131.61: 78
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" CA  ASP A  47 "
        model="   1" pdb=" CB  ASP A  47 "
        model="   1" pdb=" CG  ASP A  47 "
      ideal   model   delta    sigma   weight residual
     112.60  103.04    9.56 1.00e+00 1.00e+00 9.14e+01
  angle model="   1" pdb=" CA  ILE A  51 "
        model="   1" pdb=" C   ILE A  51 "
        model="   1" pdb=" N   PRO A  52 "
      ideal   model   delta    sigma   weight residual
     116.90  126.16   -9.26 1.50e+00 4.44e-01 3.81e+01
  angle model="   1" pdb=" CB  HIS A  43 "
        model="   1" pdb=" CG  HIS A  43 "
        model="   1" pdb=" ND1 HIS A  43 "
      ideal   model   delta    sigma   weight residual
     122.70  113.79    8.91 1.50e+00 4.44e-01 3.52e+01
  angle model="   1" pdb=" CA  ASP A 116 "
        model="   1" pdb=" C   ASP A 116 "
        model="   1" pdb=" N   PRO A 117 "
      ideal   model   delta    sigma   weight residual
     116.90  124.95   -8.05 1.50e+00 4.44e-01 2.88e+01
  angle model="   1" pdb=" ND1 HIS A  43 "
        model="   1" pdb=" CG  HIS A  43 "
        model="   1" pdb=" CD2 HIS A  43 "
      ideal   model   delta    sigma   weight residual
     106.10  111.21   -5.11 1.00e+00 1.00e+00 2.61e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    16.25: 984
       16.25 -    32.51: 34
       32.51 -    48.76: 10
       48.76 -    65.01: 3
       65.01 -    81.27: 1
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" C   ILE A  78 "
           model="   1" pdb=" N   ILE A  78 "
           model="   1" pdb=" CA  ILE A  78 "
           model="   1" pdb=" CB  ILE A  78 "
      ideal   model   delta  harmonic     sigma   weight residual
    -122.00 -140.15   18.15     0      2.50e+00 1.60e-01 5.27e+01
  dihedral model="   1" pdb=" N   ILE A  78 "
           model="   1" pdb=" C   ILE A  78 "
           model="   1" pdb=" CA  ILE A  78 "
           model="   1" pdb=" CB  ILE A  78 "
      ideal   model   delta  harmonic     sigma   weight residual
     123.40  140.86  -17.46     0      2.50e+00 1.60e-01 4.88e+01
  dihedral model="   1" pdb=" CA  LEU A 119 "
           model="   1" pdb=" C   LEU A 119 "
           model="   1" pdb=" N   GLU A 120 "
           model="   1" pdb=" CA  GLU A 120 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  149.99   30.01     0      5.00e+00 4.00e-02 3.60e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.000 -    0.121: 132
       0.121 -    0.243: 33
       0.243 -    0.364: 8
       0.364 -    0.485: 2
       0.485 -    0.606: 1
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  ILE A  78 "
            model="   1" pdb=" N   ILE A  78 "
            model="   1" pdb=" C   ILE A  78 "
            model="   1" pdb=" CB  ILE A  78 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.43    1.83    0.61 2.00e-01 2.50e+01 9.19e+00
  chirality model="   1" pdb=" CA  GLU A  84 "
            model="   1" pdb=" N   GLU A  84 "
            model="   1" pdb=" C   GLU A  84 "
            model="   1" pdb=" CB  GLU A  84 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.04    0.47 2.00e-01 2.50e+01 5.42e+00
  chirality model="   1" pdb=" CA  SER A  97 "
            model="   1" pdb=" N   SER A  97 "
            model="   1" pdb=" C   SER A  97 "
            model="   1" pdb=" CB  SER A  97 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.11    0.40 2.00e-01 2.50e+01 4.05e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  HIS A  43 "   -0.208 2.00e-02 2.50e+03   1.23e-01 3.03e+02
        model="   1" pdb=" CG  HIS A  43 "    0.170 2.00e-02 2.50e+03
        model="   1" pdb=" ND1 HIS A  43 "    0.173 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 HIS A  43 "    0.033 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 HIS A  43 "   -0.016 2.00e-02 2.50e+03
        model="   1" pdb=" NE2 HIS A  43 "   -0.102 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 HIS A  43 "    0.031 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 HIS A  43 "   -0.081 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A 111 "    0.050 2.00e-02 2.50e+03   7.16e-02 1.54e+02
        model="   1" pdb=" CG  TYR A 111 "    0.036 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A 111 "    0.028 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A 111 "   -0.044 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A 111 "   -0.039 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A 111 "    0.030 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A 111 "    0.018 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A 111 "    0.039 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A 111 "    0.067 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A 111 "   -0.151 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A 111 "   -0.125 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A 111 "    0.089 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  91 "    0.128 2.00e-02 2.50e+03   6.80e-02 1.39e+02
        model="   1" pdb=" CG  TYR A  91 "    0.031 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  91 "   -0.007 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  91 "   -0.044 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  91 "   -0.032 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  91 "    0.006 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  91 "    0.028 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  91 "    0.097 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  91 "   -0.015 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  91 "   -0.127 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  91 "   -0.089 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  91 "    0.024 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.73 -     2.30: 362
        2.30 -     2.88: 5040
        2.88 -     3.45: 5099
        3.45 -     4.03: 6413
        4.03 -     4.60: 9857
  Nonbonded interactions: 26771
  Sorted by model distance:
  nonbonded model="   1" pdb=" OE2 GLU A  55 "
            model="   1" pdb="HH21 ARG A  58 "
     model   vdw
     1.731 1.850
  nonbonded model="   1" pdb=" HZ1 LYS A  10 "
            model="   1" pdb=" OD1 ASP A  23 "
     model   vdw
     1.756 1.850
  nonbonded model="   1" pdb=" OE1 GLU A  55 "
            model="   1" pdb=" HE  ARG A  58 "
     model   vdw
     1.757 1.850
  nonbonded model="   1" pdb="HH21 ARG A  21 "
            model="   1" pdb=" OD2 ASP A  74 "
     model   vdw
     1.808 1.850
  nonbonded model="   1" pdb=" H   VAL A  41 "
            model="   1" pdb="HG22 VAL A  41 "
     model   vdw
     1.833 2.270
  ... (remaining 26766 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 1.10
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 1.22 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 130
        1.23 -     1.43: 337
        1.43 -     1.62: 664
        1.62 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" C   TYR A  50 "
       model="   1" pdb=" N   ILE A  51 "
    ideal  model  delta    sigma   weight residual
    1.329  1.383 -0.054 1.40e-02 5.10e+03 1.50e+01
  bond model="   1" pdb=" CE1 HIS A 139 "
       model="   1" pdb=" NE2 HIS A 139 "
    ideal  model  delta    sigma   weight residual
    1.321  1.356 -0.035 1.00e-02 1.00e+04 1.21e+01
  bond model="   1" pdb=" CE1 HIS A 134 "
       model="   1" pdb=" NE2 HIS A 134 "
    ideal  model  delta    sigma   weight residual
    1.321  1.356 -0.035 1.00e-02 1.00e+04 1.19e+01
  bond model="   1" pdb=" CE1 HIS A 138 "
       model="   1" pdb=" NE2 HIS A 138 "
    ideal  model  delta    sigma   weight residual
    1.321  1.354 -0.033 1.00e-02 1.00e+04 1.08e+01
  bond model="   1" pdb=" CE1 HIS A  43 "
       model="   1" pdb=" NE2 HIS A  43 "
    ideal  model  delta    sigma   weight residual
    1.321  1.354 -0.033 1.00e-02 1.00e+04 1.07e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       95.77 -   103.42: 19
      103.42 -   111.07: 2369
      111.07 -   118.72: 800
      118.72 -   126.38: 860
      126.38 -   134.03: 29
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" C   HIS A 138 "
        model="   1" pdb=" N   HIS A 139 "
        model="   1" pdb=" CA  HIS A 139 "
      ideal   model   delta    sigma   weight residual
     121.70  134.03  -12.33 1.80e+00 3.09e-01 4.69e+01
  angle model="   1" pdb=" N   PRO A 114 "
        model="   1" pdb=" CA  PRO A 114 "
        model="   1" pdb=" C   PRO A 114 "
      ideal   model   delta    sigma   weight residual
     112.10  127.76  -15.66 2.50e+00 1.60e-01 3.92e+01
  angle model="   1" pdb=" C   LYS A 113 "
        model="   1" pdb=" N   PRO A 114 "
        model="   1" pdb=" CD  PRO A 114 "
      ideal   model   delta    sigma   weight residual
     125.00  102.41   22.59 4.10e+00 5.95e-02 3.04e+01
  angle model="   1" pdb=" CA  HIS A 139 "
        model="   1" pdb=" CB  HIS A 139 "
        model="   1" pdb=" CG  HIS A 139 "
      ideal   model   delta    sigma   weight residual
     113.80  119.10   -5.30 1.00e+00 1.00e+00 2.81e+01
  angle model="   1" pdb=" CA  PRO A 114 "
        model="   1" pdb=" C   PRO A 114 "
        model="   1" pdb=" N   ALA A 115 "
      ideal   model   delta    sigma   weight residual
     116.20  126.03   -9.83 2.00e+00 2.50e-01 2.42e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    11.83: 940
       11.83 -    23.66: 67
       23.66 -    35.49: 13
       35.49 -    47.31: 7
       47.31 -    59.14: 5
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" CA  MET A 128 "
           model="   1" pdb=" C   MET A 128 "
           model="   1" pdb=" N   ARG A 129 "
           model="   1" pdb=" CA  ARG A 129 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  127.60   52.40     0      5.00e+00 4.00e-02 1.10e+02
  dihedral model="   1" pdb=" CA  ARG A 127 "
           model="   1" pdb=" C   ARG A 127 "
           model="   1" pdb=" N   MET A 128 "
           model="   1" pdb=" CA  MET A 128 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  138.17   41.83     0      5.00e+00 4.00e-02 7.00e+01
  dihedral model="   1" pdb=" CA  GLU A 133 "
           model="   1" pdb=" C   GLU A 133 "
           model="   1" pdb=" N   HIS A 134 "
           model="   1" pdb=" CA  HIS A 134 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  139.31   40.69     0      5.00e+00 4.00e-02 6.62e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.001 -    0.114: 136
       0.114 -    0.228: 30
       0.228 -    0.341: 7
       0.341 -    0.454: 2
       0.454 -    0.567: 1
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  PRO A 114 "
            model="   1" pdb=" N   PRO A 114 "
            model="   1" pdb=" C   PRO A 114 "
            model="   1" pdb=" CB  PRO A 114 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.72    2.15    0.57 2.00e-01 2.50e+01 8.04e+00
  chirality model="   1" pdb=" CA  ILE A  51 "
            model="   1" pdb=" N   ILE A  51 "
            model="   1" pdb=" C   ILE A  51 "
            model="   1" pdb=" CB  ILE A  51 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.43    2.00    0.43 2.00e-01 2.50e+01 4.71e+00
  chirality model="   1" pdb=" CA  MET A 128 "
            model="   1" pdb=" N   MET A 128 "
            model="   1" pdb=" C   MET A 128 "
            model="   1" pdb=" CB  MET A 128 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.16    0.35 2.00e-01 2.50e+01 3.14e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  PHE A  45 "    0.087 2.00e-02 2.50e+03   4.54e-02 6.17e+01
        model="   1" pdb=" CG  PHE A  45 "    0.009 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 PHE A  45 "   -0.019 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 PHE A  45 "   -0.017 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 PHE A  45 "   -0.012 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 PHE A  45 "   -0.014 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  PHE A  45 "    0.032 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 PHE A  45 "   -0.043 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 PHE A  45 "   -0.036 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 PHE A  45 "   -0.037 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 PHE A  45 "   -0.043 2.00e-02 2.50e+03
        model="   1" pdb=" HZ  PHE A  45 "    0.093 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  91 "    0.080 2.00e-02 2.50e+03   4.16e-02 5.20e+01
        model="   1" pdb=" CG  TYR A  91 "    0.027 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  91 "   -0.029 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  91 "   -0.007 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  91 "    0.011 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  91 "   -0.011 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  91 "    0.017 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  91 "    0.031 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  91 "   -0.092 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  91 "   -0.026 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  91 "    0.033 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  91 "   -0.033 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" C   LYS A 113 "   -0.118 5.00e-02 4.00e+02   1.74e-01 4.85e+01
        model="   1" pdb=" N   PRO A 114 "    0.300 5.00e-02 4.00e+02
        model="   1" pdb=" CA  PRO A 114 "   -0.105 5.00e-02 4.00e+02
        model="   1" pdb=" CD  PRO A 114 "   -0.078 5.00e-02 4.00e+02
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.76 -     2.33: 460
        2.33 -     2.90: 5050
        2.90 -     3.47: 5019
        3.47 -     4.03: 6395
        4.03 -     4.60: 9540
  Nonbonded interactions: 26464
  Sorted by model distance:
  nonbonded model="   1" pdb=" OE2 GLU A  55 "
            model="   1" pdb="HH21 ARG A  58 "
     model   vdw
     1.765 1.850
  nonbonded model="   1" pdb=" OE1 GLU A  55 "
            model="   1" pdb=" HE  ARG A  58 "
     model   vdw
     1.784 1.850
  nonbonded model="   1" pdb=" HZ1 LYS A  10 "
            model="   1" pdb=" OD1 ASP A  23 "
     model   vdw
     1.832 1.850
  nonbonded model="   1" pdb=" HE1 HIS A 135 "
            model="   1" pdb=" HB2 HIS A 137 "
     model   vdw
     1.852 2.270
  nonbonded model="   1" pdb=" HG1 THR A  56 "
            model="   1" pdb=" HH  TYR A 111 "
     model   vdw
     1.869 2.100
  ... (remaining 26459 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000 (Z=  0.002)
  Max. delta:    0.052 (Z=  3.714)
  Mean delta:    0.015 (Z=  0.828)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  55  GLU  N
   A  55  GLU  CA
   A  55  GLU  CB        110.50   120.11    -9.61  1.70e+00  3.20e+01   5.7*sigma
   A 124  ALA  N
   A 124  ALA  CA
   A 124  ALA  CB        110.40   117.94    -7.54  1.50e+00  2.53e+01   5.0*sigma
   A  92  THR  CA
   A  92  THR  CB
   A  92  THR  CG2       110.50   118.54    -8.04  1.70e+00  2.24e+01   4.7*sigma
   A 138  HIS  ND1
   A 138  HIS  CG
   A 138  HIS  CD2       106.10   110.64    -4.54  1.00e+00  2.06e+01   4.5*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   110.56    -4.46  1.00e+00  1.99e+01   4.5*sigma
   A 134  HIS  ND1
   A 134  HIS  CG
   A 134  HIS  CD2       106.10   110.55    -4.45  1.00e+00  1.98e+01   4.4*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.49    -4.39  1.00e+00  1.92e+01   4.4*sigma
   A 113  LYS  CA
   A 113  LYS  C
   A 114  PRO  N         116.90   123.44    -6.54  1.50e+00  1.90e+01   4.4*sigma
   A  43  HIS  ND1
   A  43  HIS  CG
   A  43  HIS  CD2       106.10   110.43    -4.33  1.00e+00  1.88e+01   4.3*sigma
   A  43  HIS  C
   A  43  HIS  CA
   A  43  HIS  CB        110.10   101.91     8.19  1.90e+00  1.86e+01   4.3*sigma
   A  55  GLU  C
   A  56  THR  N
   A  56  THR  CA        121.70   129.44    -7.74  1.80e+00  1.85e+01   4.3*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.38    -4.28  1.00e+00  1.84e+01   4.3*sigma
   A  98  SER  N
   A  98  SER  CA
   A  98  SER  CB        110.50   117.76    -7.26  1.70e+00  1.82e+01   4.3*sigma
   A  21  ARG  CA
   A  21  ARG  C
   A  22  PRO  N         116.90   123.28    -6.38  1.50e+00  1.81e+01   4.3*sigma
   A 136  HIS  ND1
   A 136  HIS  CG
   A 136  HIS  CD2       106.10   110.22    -4.12  1.00e+00  1.70e+01   4.1*sigma

  Min. delta:    0.003 (Z=  0.002)
  Max. delta:    9.657 (Z=  5.654)
  Mean delta:    2.133 (Z=  1.200)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 122  ILE  CA
   A 122  ILE  C
   A 123  GLU  N
   A 123  GLU  CA        180.00   152.53    27.47  5.00e+00  3.02e+01   5.5*sigma
   A 121  GLY  CA
   A 121  GLY  C
   A 122  ILE  N
   A 122  ILE  CA        180.00   152.81    27.19  5.00e+00  2.96e+01   5.4*sigma
   A 124  ALA  CA
   A 124  ALA  C
   A 125  LYS  N
   A 125  LYS  CA        180.00   158.72    21.28  5.00e+00  1.81e+01   4.3*sigma
   A  95  ASP  CA
   A  95  ASP  C
   A  96  GLY  N
   A  96  GLY  CA        180.00   159.29    20.71  5.00e+00  1.71e+01   4.1*sigma
   A  21  ARG  CA
   A  21  ARG  C
   A  22  PRO  N
   A  22  PRO  CA        180.00   159.95    20.05  5.00e+00  1.61e+01   4.0*sigma

  Min. delta:    0.061
  Max. delta:   73.116
  Mean delta:   12.233

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.001
  Max. delta:    0.433
  Mean delta:    0.105

                       ----------Planar groups----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.069
  Mean delta:    0.014

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.011   0.052   2241  Z= 0.590
    Angle     :  1.954  10.784   4077  Z= 0.881
    Chirality :  0.105   0.433    176
    Planarity :  0.011   0.067    326
    Dihedral  : 11.028  73.116    768
    Min Nonbonded Distance : 1.761
  
  Molprobity Statistics.
    All-atom Clashscore : 2.71
    Ramachandran Plot:
      Outliers :  5.11 %
      Allowed  :  9.49 %
      Favored  : 85.40 %
    Rotamer:
      Outliers :  0.81 %
      Allowed  :  0.00 %
      Favored  : 99.19 %
    Cbeta Deviations :  3.03 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.00 %
      Twisted Proline : 0.00 %
      Twisted General : 0.00 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole:  0.05 (0.71), residues: 137
    helix:  2.49 (0.53), residues: 64
    sheet:  None (None), residues: 0
    loop : -2.47 (0.73), residues: 73
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.006   0.001   HIS A 139 
   PHE   0.088   0.023   PHE A  45 
   TYR   0.120   0.019   TYR A  68 
   ARG   0.051   0.012   ARG A 129 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.006   0.001   HIS A 139 
   PHE   0.058   0.020   PHE A  45 
   TYR   0.073   0.017   TYR A  68 
   ARG   0.022   0.005   ARG A  58 

                     ----------Asn/Gln/His flips----------                     

  No backwards Asn/Gln/His sidechains found.

=================================== Summary ===================================

  Ramachandran outliers =   5.11 %
                favored =  85.40 %
  Rotamer outliers      =   0.81 %
  C-beta deviations     =     4
  Clashscore            =   2.71
  RMS(bonds)            =   0.0110
  RMS(angles)           =   1.95
  MolProbity score      =   1.71

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py

End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000 (Z=  0.001)
  Max. delta:    0.072 (Z=  3.756)
  Mean delta:    0.017 (Z=  0.871)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  51  ILE  CA
   A  51  ILE  C
   A  52  PRO  N         116.90   126.94   -10.04  1.50e+00  4.48e+01   6.7*sigma
   A 113  LYS  CA
   A 113  LYS  C
   A 114  PRO  N         116.90   124.52    -7.62  1.50e+00  2.58e+01   5.1*sigma
   A 139  HIS  N
   A 139  HIS  CA
   A 139  HIS  CB        110.50   118.57    -8.07  1.70e+00  2.25e+01   4.7*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   110.65    -4.55  1.00e+00  2.07e+01   4.6*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.55    -4.45  1.00e+00  1.98e+01   4.4*sigma
   A 138  HIS  ND1
   A 138  HIS  CG
   A 138  HIS  CD2       106.10   110.46    -4.36  1.00e+00  1.91e+01   4.4*sigma
   A 136  HIS  ND1
   A 136  HIS  CG
   A 136  HIS  CD2       106.10   110.39    -4.29  1.00e+00  1.84e+01   4.3*sigma
   A 117  PRO  C
   A 118  ASP  N
   A 118  ASP  CA        121.70   129.34    -7.64  1.80e+00  1.80e+01   4.2*sigma
   A  52  PRO  CA
   A  52  PRO  C
   A  53  LEU  N         116.20   124.69    -8.49  2.00e+00  1.80e+01   4.2*sigma
   A  44  ASP  C
   A  44  ASP  CA
   A  44  ASP  CB        110.10   118.15    -8.05  1.90e+00  1.80e+01   4.2*sigma
   A  76  SER  C
   A  77  ILE  N
   A  77  ILE  CA        121.70   129.19    -7.49  1.80e+00  1.73e+01   4.2*sigma
   A  21  ARG  CA
   A  21  ARG  C
   A  22  PRO  N         116.90   123.13    -6.23  1.50e+00  1.73e+01   4.2*sigma
   A 134  HIS  ND1
   A 134  HIS  CG
   A 134  HIS  CD2       106.10   110.15    -4.05  1.00e+00  1.64e+01   4.1*sigma
   A  43  HIS  ND1
   A  43  HIS  CG
   A  43  HIS  CD2       106.10   110.15    -4.05  1.00e+00  1.64e+01   4.0*sigma

  Min. delta:    0.002 (Z=  0.001)
  Max. delta:   10.037 (Z=  6.691)
  Mean delta:    2.261 (Z=  1.254)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 138  HIS  CA
   A 138  HIS  C
   A 139  HIS  N
   A 139  HIS  CA        180.00   140.65    39.35  5.00e+00  6.19e+01   7.9*sigma
   A 137  HIS  CA
   A 137  HIS  C
   A 138  HIS  N
   A 138  HIS  CA        180.00   151.37    28.63  5.00e+00  3.28e+01   5.7*sigma
   A 119  LEU  CA
   A 119  LEU  C
   A 120  GLU  N
   A 120  GLU  CA        180.00   153.83    26.17  5.00e+00  2.74e+01   5.2*sigma
   A  93  LEU  CA
   A  93  LEU  C
   A  94  GLY  N
   A  94  GLY  CA        180.00   159.39    20.61  5.00e+00  1.70e+01   4.1*sigma

  Min. delta:    0.019
  Max. delta:   70.359
  Mean delta:   10.568

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.525
  Mean delta:    0.118

                       ----------Planar groups----------                       

  atoms                 rms_deltas   delta_max    residual   deviation
   A  50  TYR  CB
   A  50  TYR  CG
   A  50  TYR  CD1
   A  50  TYR  CD2
   A  50  TYR  CE1
   A  50  TYR  CE2
   A  50  TYR  CZ
   A  50  TYR  OH            0.166       0.159      552.42   7.9*sigma
   A 105  TYR  CB
   A 105  TYR  CG
   A 105  TYR  CD1
   A 105  TYR  CD2
   A 105  TYR  CE1
   A 105  TYR  CE2
   A 105  TYR  CZ
   A 105  TYR  OH            0.046       0.088       43.08   4.4*sigma
   A  68  TYR  CB
   A  68  TYR  CG
   A  68  TYR  CD1
   A  68  TYR  CD2
   A  68  TYR  CE1
   A  68  TYR  CE2
   A  68  TYR  CZ
   A  68  TYR  OH            0.044       0.084       39.43   4.2*sigma

  Min. delta:    0.000
  Max. delta:    0.166
  Mean delta:    0.018

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

                       ----------Angle outliers----------                      

   A 138  HIS  HA , Angle N-CA-HA, observed: 96.049, delta from target: 13.951

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.012   0.072   2241  Z= 0.620
    Angle     :  2.034  13.951   4077  Z= 0.916
    Chirality :  0.118   0.525    176
    Planarity :  0.014   0.163    326
    Dihedral  : 10.004  70.359    768
    Min Nonbonded Distance : 1.829
  
  Molprobity Statistics.
    All-atom Clashscore : 2.26
    Ramachandran Plot:
      Outliers :  3.65 %
      Allowed  : 12.41 %
      Favored  : 83.94 %
    Rotamer:
      Outliers :  0.81 %
      Allowed  :  0.81 %
      Favored  : 98.39 %
    Cbeta Deviations :  2.27 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.00 %
      Twisted Proline : 0.00 %
      Twisted General : 0.76 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -1.57 (0.76), residues: 137
    helix:  1.09 (0.62), residues: 65
    sheet:  None (None), residues: 0
    loop : -3.32 (0.78), residues: 72
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.003   0.001   HIS A  43 
   PHE   0.088   0.017   PHE A  45 
   TYR   0.369   0.035   TYR A  50 
   ARG   0.045   0.007   ARG A  58 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.003   0.001   HIS A  43 
   PHE   0.059   0.017   PHE A  45 
   TYR   0.287   0.038   TYR A  50 
   ARG   0.003   0.001   ARG A 127 

                     ----------Asn/Gln/His flips----------                     

  No backwards Asn/Gln/His sidechains found.

=================================== Summary ===================================

  Ramachandran outliers =   3.65 %
                favored =  83.94 %
  Rotamer outliers      =   0.81 %
  C-beta deviations     =     3
  Clashscore            =   2.26
  RMS(bonds)            =   0.0118
  RMS(angles)           =   2.03
  MolProbity score      =   1.68

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py

End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000 (Z=  0.000)
  Max. delta:    0.064 (Z=  3.872)
  Mean delta:    0.017 (Z=  0.885)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 101  LYS  CA
   A 101  LYS  C
   A 102  PRO  N         116.90   128.77   -11.87  1.50e+00  6.26e+01   7.9*sigma
   A   2  LEU  CD1
   A   2  LEU  CG
   A   2  LEU  CD2       110.80    97.40    13.40  2.20e+00  3.71e+01   6.1*sigma
   A 116  ASP  CA
   A 116  ASP  C
   A 117  PRO  N         116.90   125.95    -9.05  1.50e+00  3.64e+01   6.0*sigma
   A  30  ILE  CA
   A  30  ILE  CB
   A  30  ILE  CG1       110.40   120.02    -9.62  1.70e+00  3.20e+01   5.7*sigma
   A 138  HIS  ND1
   A 138  HIS  CG
   A 138  HIS  CD2       106.10   110.93    -4.83  1.00e+00  2.33e+01   4.8*sigma
   A  58  ARG  NE
   A  58  ARG  CZ
   A  58  ARG  NH2       119.20   123.47    -4.27  9.00e-01  2.25e+01   4.7*sigma
   A   2  LEU  CB
   A   2  LEU  CG
   A   2  LEU  CD1       110.70   124.93   -14.23  3.00e+00  2.25e+01   4.7*sigma
   A 136  HIS  ND1
   A 136  HIS  CG
   A 136  HIS  CD2       106.10   110.71    -4.61  1.00e+00  2.13e+01   4.6*sigma
   A 116  ASP  N
   A 116  ASP  CA
   A 116  ASP  C         111.00   123.68   -12.68  2.80e+00  2.05e+01   4.5*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.56    -4.46  1.00e+00  1.99e+01   4.5*sigma
   A  43  HIS  ND1
   A  43  HIS  CG
   A  43  HIS  CD2       106.10   110.54    -4.44  1.00e+00  1.97e+01   4.4*sigma
   A  47  ASP  CA
   A  47  ASP  CB
   A  47  ASP  CG        112.60   117.02    -4.42  1.00e+00  1.95e+01   4.4*sigma
   A 134  HIS  ND1
   A 134  HIS  CG
   A 134  HIS  CD2       106.10   110.47    -4.37  1.00e+00  1.91e+01   4.4*sigma
   A 116  ASP  O
   A 116  ASP  C
   A 117  PRO  N         123.00   116.03     6.97  1.60e+00  1.90e+01   4.4*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   110.44    -4.34  1.00e+00  1.88e+01   4.3*sigma
   A 113  LYS  CA
   A 113  LYS  C
   A 114  PRO  N         116.90   123.29    -6.39  1.50e+00  1.82e+01   4.3*sigma
   A 118  ASP  CA
   A 118  ASP  CB
   A 118  ASP  CG        112.60   116.84    -4.24  1.00e+00  1.80e+01   4.2*sigma
   A 101  LYS  O
   A 101  LYS  C
   A 102  PRO  N         123.00   116.29     6.71  1.60e+00  1.76e+01   4.2*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.18    -4.08  1.00e+00  1.67e+01   4.1*sigma
   A  95  ASP  C
   A  96  GLY  N
   A  96  GLY  CA        121.70   129.03    -7.33  1.80e+00  1.66e+01   4.1*sigma

  Min. delta:    0.001 (Z=  0.001)
  Max. delta:   14.233 (Z=  7.912)
  Mean delta:    2.498 (Z=  1.344)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  51  ILE  CA
   A  51  ILE  C
   A  52  PRO  N
   A  52  PRO  CA        180.00   149.97    30.03  5.00e+00  3.61e+01   6.0*sigma
   A  73  GLY  CA
   A  73  GLY  C
   A  74  ASP  N
   A  74  ASP  CA        180.00  -154.89   -25.11  5.00e+00  2.52e+01   5.0*sigma
   A 122  ILE  CA
   A 122  ILE  C
   A 123  GLU  N
   A 123  GLU  CA        180.00   158.40    21.60  5.00e+00  1.87e+01   4.3*sigma
   A 123  GLU  CA
   A 123  GLU  C
   A 124  ALA  N
   A 124  ALA  CA        180.00   159.24    20.76  5.00e+00  1.72e+01   4.2*sigma

  Min. delta:    0.014
  Max. delta:   56.249
  Mean delta:   10.551

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.584
  Mean delta:    0.128

                       ----------Planar groups----------                       

  atoms                 rms_deltas   delta_max    residual   deviation
   A 111  TYR  CB
   A 111  TYR  CG
   A 111  TYR  CD1
   A 111  TYR  CD2
   A 111  TYR  CE1
   A 111  TYR  CE2
   A 111  TYR  CZ
   A 111  TYR  OH            0.057       0.096       65.99   4.8*sigma

  Min. delta:    0.000
  Max. delta:    0.057
  Mean delta:    0.013

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

                       ----------Angle outliers----------                      

   A 119  LEU  HG , Angle CD1-CG-HG, observed: 120.698, delta from target: -12.698
   A  30  ILE  HB , Angle CA-CB-HB, observed: 95.944, delta from target: 13.056
   A 116  ASP  HA , Angle N-CA-HA, observed: 96.639, delta from target: 13.361
   A   2  LEU  HG , Angle CD2-CG-HG, observed: 122.743, delta from target: -14.743
   A   2  LEU  HG , Angle CB-CG-HG, observed: 93.486, delta from target: 15.514

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.012   0.064   2241  Z= 0.630
    Angle     :  2.225  15.514   4077  Z= 0.985
    Chirality :  0.128   0.584    176
    Planarity :  0.012   0.089    326
    Dihedral  :  9.670  59.990    768
    Min Nonbonded Distance : 1.606
  
  Molprobity Statistics.
    All-atom Clashscore : 8.57
    Ramachandran Plot:
      Outliers :  2.92 %
      Allowed  :  8.76 %
      Favored  : 88.32 %
    Rotamer:
      Outliers :  1.61 %
      Allowed  :  1.61 %
      Favored  : 96.77 %
    Cbeta Deviations :  2.27 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.00 %
      Twisted Proline : 14.29 %
      Twisted General : 0.00 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -1.96 (0.67), residues: 137
    helix:  0.16 (0.61), residues: 62
    sheet:  None (None), residues: 0
    loop : -2.73 (0.66), residues: 75
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.004   0.001   HIS A 138 
   PHE   0.112   0.029   PHE A  45 
   TYR   0.198   0.026   TYR A 111 
   ARG   0.034   0.010   ARG A  21 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.004   0.001   HIS A 138 
   PHE   0.065   0.025   PHE A  45 
   TYR   0.097   0.021   TYR A 111 
   ARG   0.015   0.004   ARG A  21 

                     ----------Asn/Gln/His flips----------                     

  No backwards Asn/Gln/His sidechains found.

=================================== Summary ===================================


End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000 (Z=  0.000)
  Max. delta:    0.045 (Z=  3.623)
  Mean delta:    0.015 (Z=  0.815)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 116  ASP  CA
   A 116  ASP  C
   A 117  PRO  N         116.90   128.18   -11.28  1.50e+00  5.65e+01   7.5*sigma
   A 132  LEU  C
   A 133  GLU  N
   A 133  GLU  CA        121.70   134.81   -13.11  1.80e+00  5.30e+01   7.3*sigma
   A  29  ASP  CA
   A  29  ASP  CB
   A  29  ASP  CG        112.60   118.23    -5.63  1.00e+00  3.17e+01   5.6*sigma
   A 132  LEU  CA
   A 132  LEU  C
   A 133  GLU  N         116.20   126.56   -10.36  2.00e+00  2.69e+01   5.2*sigma
   A 134  HIS  ND1
   A 134  HIS  CG
   A 134  HIS  CD2       106.10   111.07    -4.97  1.00e+00  2.47e+01   5.0*sigma
   A  88  ASP  CA
   A  88  ASP  CB
   A  88  ASP  CG        112.60   107.64     4.96  1.00e+00  2.46e+01   5.0*sigma
   A 132  LEU  O
   A 132  LEU  C
   A 133  GLU  N         123.00   115.20     7.80  1.60e+00  2.38e+01   4.9*sigma
   A 116  ASP  O
   A 116  ASP  C
   A 117  PRO  N         123.00   115.32     7.68  1.60e+00  2.31e+01   4.8*sigma
   A 133  GLU  N
   A 133  GLU  CA
   A 133  GLU  CB        110.50   118.48    -7.98  1.70e+00  2.20e+01   4.7*sigma
   A 138  HIS  N
   A 138  HIS  CA
   A 138  HIS  C         111.00   123.96   -12.96  2.80e+00  2.14e+01   4.6*sigma
   A  73  GLY  C
   A  74  ASP  N
   A  74  ASP  CA        121.70   129.95    -8.25  1.80e+00  2.10e+01   4.6*sigma
   A 138  HIS  ND1
   A 138  HIS  CG
   A 138  HIS  CD2       106.10   110.56    -4.46  1.00e+00  1.99e+01   4.5*sigma
   A  43  HIS  ND1
   A  43  HIS  CG
   A  43  HIS  CD2       106.10   110.43    -4.33  1.00e+00  1.87e+01   4.3*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.42    -4.32  1.00e+00  1.87e+01   4.3*sigma
   A  51  ILE  CA
   A  51  ILE  C
   A  52  PRO  N         116.90   123.27    -6.37  1.50e+00  1.80e+01   4.2*sigma
   A 136  HIS  ND1
   A 136  HIS  CG
   A 136  HIS  CD2       106.10   110.31    -4.21  1.00e+00  1.77e+01   4.2*sigma
   A  88  ASP  N
   A  88  ASP  CA
   A  88  ASP  C         111.00   122.68   -11.68  2.80e+00  1.74e+01   4.2*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   110.27    -4.17  1.00e+00  1.74e+01   4.2*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.18    -4.08  1.00e+00  1.66e+01   4.1*sigma

  Min. delta:    0.003 (Z=  0.001)
  Max. delta:   13.108 (Z=  7.520)
  Mean delta:    2.207 (Z=  1.232)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 137  HIS  CA
   A 137  HIS  C
   A 138  HIS  N
   A 138  HIS  CA        180.00   111.00    69.00  5.00e+00  1.90e+02  13.8*sigma
   A 138  HIS  CA
   A 138  HIS  C
   A 139  HIS  N
   A 139  HIS  CA        180.00   125.25    54.75  5.00e+00  1.20e+02  10.9*sigma
   A  87  GLY  CA
   A  87  GLY  C
   A  88  ASP  N
   A  88  ASP  CA        180.00   144.28    35.72  5.00e+00  5.10e+01   7.1*sigma
   A  81  TYR  CA
   A  81  TYR  C
   A  82  THR  N
   A  82  THR  CA        180.00   156.33    23.67  5.00e+00  2.24e+01   4.7*sigma
   A 133  GLU  CA
   A 133  GLU  C
   A 134  HIS  N
   A 134  HIS  CA        180.00   157.55    22.45  5.00e+00  2.02e+01   4.5*sigma
   A 134  HIS  CA
   A 134  HIS  C
   A 135  HIS  N
   A 135  HIS  CA        180.00   158.96    21.04  5.00e+00  1.77e+01   4.2*sigma
   A  80  GLY  CA
   A  80  GLY  C
   A  81  TYR  N
   A  81  TYR  CA        180.00  -159.59   -20.41  5.00e+00  1.67e+01   4.1*sigma

  Min. delta:    0.001
  Max. delta:   69.000
  Mean delta:   11.857

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.001
  Max. delta:    0.422
  Mean delta:    0.096

                       ----------Planar groups----------                       

  atoms                 rms_deltas   delta_max    residual   deviation
   A  68  TYR  CB
   A  68  TYR  CG
   A  68  TYR  CD1
   A  68  TYR  CD2
   A  68  TYR  CE1
   A  68  TYR  CE2
   A  68  TYR  CZ
   A  68  TYR  OH            0.076       0.151      114.49   7.6*sigma

  Min. delta:    0.000
  Max. delta:    0.087
  Mean delta:    0.014

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

                       ----------Angle outliers----------                      

   A 138  HIS  HA , Angle N-CA-HA, observed: 96.968, delta from target: 13.032

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.011   0.045   2241  Z= 0.580
    Angle     :  1.980  13.108   4077  Z= 0.897
    Chirality :  0.096   0.422    176
    Planarity :  0.011   0.080    326
    Dihedral  : 10.109  69.000    768
    Min Nonbonded Distance : 1.736
  
  Molprobity Statistics.
    All-atom Clashscore : 4.96
    Ramachandran Plot:
      Outliers :  8.76 %
      Allowed  :  9.49 %
      Favored  : 81.75 %
    Rotamer:
      Outliers :  0.00 %
      Allowed  :  1.61 %
      Favored  : 98.39 %
    Cbeta Deviations :  0.76 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.76 %
      Twisted Proline : 0.00 %
      Twisted General : 2.29 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -1.28 (0.71), residues: 137
    helix:  0.86 (0.65), residues: 50
    sheet:  None (None), residues: 0
    loop : -2.04 (0.69), residues: 87
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.004   0.001   HIS A 134 
   PHE   0.097   0.016   PHE A  15 
   TYR   0.211   0.018   TYR A  68 
   ARG   0.066   0.011   ARG A  21 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.004   0.001   HIS A 134 
   PHE   0.062   0.015   PHE A  15 
   TYR   0.151   0.019   TYR A  68 
   ARG   0.006   0.002   ARG A  21 

                     ----------Asn/Gln/His flips----------                     

  No backwards Asn/Gln/His sidechains found.

=================================== Summary ===================================

  Ramachandran outliers =   2.92 %
                favored =  88.32 %
  Rotamer outliers      =   1.61 %
  C-beta deviations     =     3
  Clashscore            =   8.57
  RMS(bonds)            =   0.0119
  RMS(angles)           =   2.22
  MolProbity score      =   2.21

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py

End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  atoms                 ideal   model   delta   sigma   slack  residual   deviation
   A  97  SER  C
   A  98  SER  N           1.33     1.39    -0.06  1.40e-02  2.05e+01   4.5*sigma
   A  99  LEU  C
   A 100  GLN  N           1.33     1.39    -0.06  1.40e-02  2.05e+01   4.5*sigma
   A  21  ARG  CD
   A  21  ARG  NE          1.46     1.51    -0.06  1.40e-02  1.62e+01   4.0*sigma

  Min. delta:    0.000 (Z=  0.005)
  Max. delta:    0.073 (Z=  4.526)
  Mean delta:    0.017 (Z=  0.924)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  78  ILE  CA
   A  78  ILE  CB
   A  78  ILE  CG2       110.50    96.54    13.96  1.70e+00  6.75e+01   8.2*sigma
   A  97  SER  C
   A  98  SER  N
   A  98  SER  CA        121.70   132.41   -10.71  1.80e+00  3.54e+01   5.9*sigma
   A 113  LYS  CA
   A 113  LYS  C
   A 114  PRO  N         116.90   125.73    -8.83  1.50e+00  3.46e+01   5.9*sigma
   A  78  ILE  CA
   A  78  ILE  CB
   A  78  ILE  CG1       110.40   120.29    -9.89  1.70e+00  3.38e+01   5.8*sigma
   A  98  SER  C
   A  98  SER  CA
   A  98  SER  CB        110.10    99.12    10.98  1.90e+00  3.34e+01   5.8*sigma
   A  98  SER  CA
   A  98  SER  C
   A  99  LEU  N         116.20   126.94   -10.74  2.00e+00  2.89e+01   5.4*sigma
   A  80  GLY  N
   A  80  GLY  CA
   A  80  GLY  C         113.30   128.07   -14.77  2.90e+00  2.60e+01   5.1*sigma
   A  29  ASP  CA
   A  29  ASP  CB
   A  29  ASP  CG        112.60   117.48    -4.88  1.00e+00  2.38e+01   4.9*sigma
   A  99  LEU  N
   A  99  LEU  CA
   A  99  LEU  C         111.00   124.52   -13.52  2.80e+00  2.33e+01   4.8*sigma
   A  46  SER  N
   A  46  SER  CA
   A  46  SER  CB        110.50   118.62    -8.12  1.70e+00  2.28e+01   4.8*sigma
   A  48  ALA  N
   A  48  ALA  CA
   A  48  ALA  CB        110.40   103.48     6.92  1.50e+00  2.13e+01   4.6*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   110.70    -4.60  1.00e+00  2.11e+01   4.6*sigma
   A  36  ASP  CA
   A  36  ASP  CB
   A  36  ASP  CG        112.60   117.18    -4.58  1.00e+00  2.10e+01   4.6*sigma
   A 136  HIS  ND1
   A 136  HIS  CG
   A 136  HIS  CD2       106.10   110.57    -4.47  1.00e+00  2.00e+01   4.5*sigma
   A  51  ILE  CA
   A  51  ILE  CB
   A  51  ILE  CG2       110.50   118.09    -7.59  1.70e+00  1.99e+01   4.5*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.47    -4.37  1.00e+00  1.91e+01   4.4*sigma
   A 134  HIS  ND1
   A 134  HIS  CG
   A 134  HIS  CD2       106.10   110.41    -4.31  1.00e+00  1.86e+01   4.3*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.40    -4.30  1.00e+00  1.85e+01   4.3*sigma
   A  39  LEU  CB
   A  39  LEU  CG
   A  39  LEU  CD1       110.70   123.58   -12.88  3.00e+00  1.84e+01   4.3*sigma
   A  98  SER  CA
   A  98  SER  C
   A  98  SER  O         120.80   113.55     7.25  1.70e+00  1.82e+01   4.3*sigma
   A 138  HIS  ND1
   A 138  HIS  CG
   A 138  HIS  CD2       106.10   110.33    -4.23  1.00e+00  1.79e+01   4.2*sigma
   A  77  ILE  CA
   A  77  ILE  CB
   A  77  ILE  CG1       110.40   117.54    -7.14  1.70e+00  1.76e+01   4.2*sigma
   A  95  ASP  CA
   A  95  ASP  CB
   A  95  ASP  CG        112.60   116.77    -4.17  1.00e+00  1.74e+01   4.2*sigma
   A 121  GLY  C
   A 122  ILE  N
   A 122  ILE  CA        121.70   129.16    -7.46  1.80e+00  1.72e+01   4.1*sigma
   A  39  LEU  N
   A  39  LEU  CA
   A  39  LEU  CB        110.50   103.54     6.96  1.70e+00  1.68e+01   4.1*sigma
   A  76  SER  C
   A  76  SER  CA
   A  76  SER  CB        110.10   102.38     7.72  1.90e+00  1.65e+01   4.1*sigma

  Min. delta:    0.001 (Z=  0.001)
  Max. delta:   14.775 (Z=  8.215)
  Mean delta:    2.460 (Z=  1.335)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 122  ILE  CA
   A 122  ILE  C
   A 123  GLU  N
   A 123  GLU  CA        180.00   144.86    35.14  5.00e+00  4.94e+01   7.0*sigma
   A 121  GLY  CA
   A 121  GLY  C
   A 122  ILE  N
   A 122  ILE  CA        180.00   148.77    31.23  5.00e+00  3.90e+01   6.2*sigma
   A  98  SER  CA
   A  98  SER  C
   A  99  LEU  N
   A  99  LEU  CA        180.00  -153.86   -26.14  5.00e+00  2.73e+01   5.2*sigma
   A 117  PRO  CA
   A 117  PRO  C
   A 118  ASP  N
   A 118  ASP  CA        180.00   154.36    25.64  5.00e+00  2.63e+01   5.1*sigma
   A  52  PRO  CA
   A  52  PRO  C
   A  53  LEU  N
   A  53  LEU  CA        180.00   156.75    23.25  5.00e+00  2.16e+01   4.6*sigma
   A 134  HIS  CA
   A 134  HIS  C
   A 135  HIS  N
   A 135  HIS  CA        180.00  -157.84   -22.16  5.00e+00  1.96e+01   4.4*sigma
   A 136  HIS  CA
   A 136  HIS  C
   A 137  HIS  N
   A 137  HIS  CA        180.00   158.55    21.45  5.00e+00  1.84e+01   4.3*sigma
   A  99  LEU  CA
   A  99  LEU  C
   A 100  GLN  N
   A 100  GLN  CA        180.00  -159.11   -20.89  5.00e+00  1.74e+01   4.2*sigma
   A 125  LYS  CA
   A 125  LYS  C
   A 126  VAL  N
   A 126  VAL  CA        180.00   159.55    20.45  5.00e+00  1.67e+01   4.1*sigma

  Min. delta:    0.022
  Max. delta:   76.676
  Mean delta:   10.986

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.002
  Max. delta:    0.558
  Mean delta:    0.128

                       ----------Planar groups----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.059
  Mean delta:    0.013

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

                       ----------Angle outliers----------                      

   A  51  ILE  HB , Angle CA-CB-HB, observed: 96.576, delta from target: 12.424
   A  78  ILE  HB , Angle CG2-CB-HB, observed: 122.059, delta from target: -13.059
   A  98  SER  HA , Angle N-CA-HA, observed: 96.648, delta from target: 13.352

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.012   0.073   2241  Z= 0.657
    Angle     :  2.178  14.775   4077  Z= 0.973
    Chirality :  0.128   0.558    176
    Planarity :  0.010   0.059    326
    Dihedral  :  9.592  76.676    768
    Min Nonbonded Distance : 1.765
  
  Molprobity Statistics.
    All-atom Clashscore : 6.31
    Ramachandran Plot:
      Outliers :  5.11 %
      Allowed  : 13.14 %
      Favored  : 81.75 %
    Rotamer:
      Outliers :  0.81 %
      Allowed  :  1.61 %
      Favored  : 97.58 %
    Cbeta Deviations :  2.27 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.00 %
      Twisted Proline : 0.00 %
      Twisted General : 1.53 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -0.82 (0.71), residues: 137
    helix:  1.48 (0.66), residues: 56
    sheet:  None (None), residues: 0
    loop : -2.19 (0.67), residues: 81
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.006   0.002   HIS A 138 
   PHE   0.049   0.013   PHE A  67 
   TYR   0.073   0.018   TYR A 105 
   ARG   0.025   0.006   ARG A  21 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.006   0.002   HIS A 138 
   PHE   0.023   0.008   PHE A  67 
   TYR   0.067   0.018   TYR A 105 
   ARG   0.003   0.001   ARG A  58 

                     ----------Asn/Gln/His flips----------                     

  No backwards Asn/Gln/His sidechains found.

=================================== Summary ===================================

  Ramachandran outliers =   8.76 %
                favored =  81.75 %
  Rotamer outliers      =   0.00 %
  C-beta deviations     =     1
  Clashscore            =   4.96
  RMS(bonds)            =   0.0110
  RMS(angles)           =   1.98
  MolProbity score      =   1.97

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py
  Ramachandran outliers =   5.11 %
                favored =  81.75 %
  Rotamer outliers      =   0.81 %
  C-beta deviations     =     3
  Clashscore            =   6.31
  RMS(bonds)            =   0.0122
  RMS(angles)           =   2.18
  MolProbity score      =   2.06

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py

============================== Collecting inputs ==============================


End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000 (Z=  0.000)
  Max. delta:    0.077 (Z=  3.847)
  Mean delta:    0.015 (Z=  0.808)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 116  ASP  CA
   A 116  ASP  C
   A 117  PRO  N         116.90   141.23   -24.33  1.50e+00  2.63e+02  16.2*sigma
   A 116  ASP  O
   A 116  ASP  C
   A 117  PRO  N         123.00   107.57    15.43  1.60e+00  9.30e+01   9.6*sigma
   A 117  PRO  N
   A 117  PRO  CA
   A 117  PRO  C         112.10   132.52   -20.42  2.50e+00  6.67e+01   8.2*sigma
   A 117  PRO  N
   A 117  PRO  CA
   A 117  PRO  CB        103.00    96.49     6.51  1.10e+00  3.50e+01   5.9*sigma
   A   7  ASP  CA
   A   7  ASP  CB
   A   7  ASP  CG        112.60   106.82     5.78  1.00e+00  3.34e+01   5.8*sigma
   A 117  PRO  CA
   A 117  PRO  C
   A 118  ASP  N         116.20   127.70   -11.50  2.00e+00  3.31e+01   5.8*sigma
   A 116  ASP  CA
   A 116  ASP  C
   A 116  ASP  O         120.80   111.04     9.76  1.70e+00  3.30e+01   5.7*sigma
   A 118  ASP  CA
   A 118  ASP  CB
   A 118  ASP  CG        112.60   117.36    -4.76  1.00e+00  2.26e+01   4.8*sigma
   A  43  HIS  ND1
   A  43  HIS  CG
   A  43  HIS  CD2       106.10   110.57    -4.47  1.00e+00  2.00e+01   4.5*sigma
   A 113  LYS  CA
   A 113  LYS  C
   A 114  PRO  N         116.90   123.47    -6.57  1.50e+00  1.92e+01   4.4*sigma
   A 138  HIS  ND1
   A 138  HIS  CG
   A 138  HIS  CD2       106.10   110.46    -4.36  1.00e+00  1.90e+01   4.4*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.37    -4.27  1.00e+00  1.82e+01   4.3*sigma
   A 117  PRO  O
   A 117  PRO  C
   A 118  ASP  N         123.00   116.17     6.83  1.60e+00  1.82e+01   4.3*sigma
   A 136  HIS  ND1
   A 136  HIS  CG
   A 136  HIS  CD2       106.10   110.31    -4.21  1.00e+00  1.77e+01   4.2*sigma
   A 134  HIS  ND1
   A 134  HIS  CG
   A 134  HIS  CD2       106.10   110.23    -4.13  1.00e+00  1.71e+01   4.1*sigma
   A 116  ASP  N
   A 116  ASP  CA
   A 116  ASP  CB        110.50   103.58     6.92  1.70e+00  1.66e+01   4.1*sigma

  Min. delta:    0.001 (Z=  0.001)
  Max. delta:   24.329 (Z= 16.219)
  Mean delta:    2.335 (Z=  1.301)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 116  ASP  CA
   A 116  ASP  C
   A 117  PRO  N
   A 117  PRO  CA          0.00   -37.06    37.06  5.00e+00  5.49e+01   7.4*sigma
   A 115  ALA  CA
   A 115  ALA  C
   A 116  ASP  N
   A 116  ASP  CA        180.00   154.72    25.28  5.00e+00  2.56e+01   5.1*sigma
   A  21  ARG  CA
   A  21  ARG  C
   A  22  PRO  N
   A  22  PRO  CA        180.00   156.14    23.86  5.00e+00  2.28e+01   4.8*sigma
   A 127  ARG  CA
   A 127  ARG  C
   A 128  MET  N
   A 128  MET  CA        180.00   158.98    21.02  5.00e+00  1.77e+01   4.2*sigma

  Min. delta:    0.072
  Max. delta:   65.258
  Mean delta:   10.017

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.001
  Max. delta:    0.514
  Mean delta:    0.108

                       ----------Planar groups----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.098
  Mean delta:    0.015

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

                       ----------Angle outliers----------                      

   A 117  PRO  HA , Angle C-CA-HA, observed: 92.206, delta from target: 16.794
   A 117  PRO  HA , Angle CB-CA-HA, observed: 130.595, delta from target: -21.595

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.011   0.077   2241  Z= 0.575
    Angle     :  2.036  24.329   4077  Z= 0.933
    Chirality :  0.108   0.514    176
    Planarity :  0.012   0.098    326
    Dihedral  :  9.068  65.258    768
    Min Nonbonded Distance : 1.760
  
  Molprobity Statistics.
    All-atom Clashscore : 1.80
    Ramachandran Plot:
      Outliers :  2.92 %
      Allowed  :  5.84 %
      Favored  : 91.24 %
    Rotamer:
      Outliers :  0.81 %
      Allowed  :  0.00 %
      Favored  : 99.19 %
    Cbeta Deviations :  0.76 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.00 %
      Twisted Proline : 14.29 %
      Twisted General : 0.00 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -0.03 (0.71), residues: 137
    helix:  1.22 (0.62), residues: 69
    sheet:  None (None), residues: 0
    loop : -1.39 (0.74), residues: 68
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.004   0.002   HIS A 136 
   PHE   0.103   0.023   PHE A  67 
   TYR   0.116   0.020   TYR A  81 
   ARG   0.029   0.010   ARG A  21 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.004   0.002   HIS A 136 
   PHE   0.062   0.024   PHE A  67 
   TYR   0.094   0.019   TYR A  81 
   ARG   0.013   0.003   ARG A  21 

                     ----------Asn/Gln/His flips----------                     

  No backwards Asn/Gln/His sidechains found.

=================================== Summary ===================================

  Ramachandran outliers =   2.92 %
                favored =  91.24 %
  Rotamer outliers      =   0.81 %
  C-beta deviations     =     1
  Clashscore            =   1.80
  RMS(bonds)            =   0.0108
  RMS(angles)           =   2.04
  MolProbity score      =   1.45

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py

End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000 (Z=  0.000)
  Max. delta:    0.060 (Z=  3.746)
  Mean delta:    0.016 (Z=  0.861)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 116  ASP  CA
   A 116  ASP  C
   A 117  PRO  N         116.90   128.90   -12.00  1.50e+00  6.40e+01   8.0*sigma
   A 113  LYS  CA
   A 113  LYS  C
   A 114  PRO  N         116.90   128.88   -11.98  1.50e+00  6.38e+01   8.0*sigma
   A 130  SER  N
   A 130  SER  CA
   A 130  SER  CB        110.50   122.48   -11.98  1.70e+00  4.97e+01   7.0*sigma
   A 136  HIS  N
   A 136  HIS  CA
   A 136  HIS  CB        110.50   121.58   -11.08  1.70e+00  4.25e+01   6.5*sigma
   A 129  ARG  C
   A 130  SER  N
   A 130  SER  CA        121.70   132.17   -10.47  1.80e+00  3.38e+01   5.8*sigma
   A 131  ILE  CA
   A 131  ILE  CB
   A 131  ILE  CG2       110.50   120.13    -9.63  1.70e+00  3.21e+01   5.7*sigma
   A 127  ARG  O
   A 127  ARG  C
   A 128  MET  N         123.00   114.30     8.70  1.60e+00  2.96e+01   5.4*sigma
   A 134  HIS  N
   A 134  HIS  CA
   A 134  HIS  CB        110.50   119.58    -9.08  1.70e+00  2.85e+01   5.3*sigma
   A 116  ASP  O
   A 116  ASP  C
   A 117  PRO  N         123.00   114.82     8.18  1.60e+00  2.62e+01   5.1*sigma
   A 113  LYS  O
   A 113  LYS  C
   A 114  PRO  N         123.00   114.96     8.04  1.60e+00  2.53e+01   5.0*sigma
   A 137  HIS  N
   A 137  HIS  CA
   A 137  HIS  CB        110.50   118.72    -8.22  1.70e+00  2.34e+01   4.8*sigma
   A 136  HIS  O
   A 136  HIS  C
   A 137  HIS  N         123.00   115.47     7.53  1.60e+00  2.21e+01   4.7*sigma
   A  43  HIS  ND1
   A  43  HIS  CG
   A  43  HIS  CD2       106.10   110.76    -4.66  1.00e+00  2.17e+01   4.7*sigma
   A 129  ARG  O
   A 129  ARG  C
   A 130  SER  N         123.00   115.57     7.43  1.60e+00  2.16e+01   4.6*sigma
   A 128  MET  N
   A 128  MET  CA
   A 128  MET  CB        110.50   118.31    -7.81  1.70e+00  2.11e+01   4.6*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.65    -4.55  1.00e+00  2.07e+01   4.5*sigma
   A  94  GLY  C
   A  95  ASP  N
   A  95  ASP  CA        121.70   129.78    -8.08  1.80e+00  2.02e+01   4.5*sigma
   A 138  HIS  ND1
   A 138  HIS  CG
   A 138  HIS  CD2       106.10   110.59    -4.49  1.00e+00  2.01e+01   4.5*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   110.53    -4.43  1.00e+00  1.97e+01   4.4*sigma
   A  90  SER  N
   A  90  SER  CA
   A  90  SER  C         111.00   123.35   -12.35  2.80e+00  1.94e+01   4.4*sigma
   A  95  ASP  N
   A  95  ASP  CA
   A  95  ASP  CB        110.50   117.96    -7.46  1.70e+00  1.93e+01   4.4*sigma
   A 134  HIS  ND1
   A 134  HIS  CG
   A 134  HIS  CD2       106.10   110.41    -4.31  1.00e+00  1.85e+01   4.3*sigma
   A 137  HIS  CA
   A 137  HIS  CB
   A 137  HIS  CG        113.80   118.05    -4.25  1.00e+00  1.80e+01   4.2*sigma
   A 101  LYS  CA
   A 101  LYS  C
   A 102  PRO  N         116.90   123.25    -6.35  1.50e+00  1.79e+01   4.2*sigma
   A 127  ARG  N
   A 127  ARG  CA
   A 127  ARG  CB        110.50   117.69    -7.19  1.70e+00  1.79e+01   4.2*sigma
   A 129  ARG  N
   A 129  ARG  CA
   A 129  ARG  CB        110.50   117.68    -7.18  1.70e+00  1.78e+01   4.2*sigma
   A  76  SER  C
   A  77  ILE  N
   A  77  ILE  CA        121.70   129.20    -7.50  1.80e+00  1.74e+01   4.2*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.21    -4.11  1.00e+00  1.69e+01   4.1*sigma
   A 120  GLU  O
   A 120  GLU  C
   A 121  GLY  N         123.00   116.48     6.52  1.60e+00  1.66e+01   4.1*sigma

  Min. delta:    0.001 (Z=  0.000)
  Max. delta:   12.346 (Z=  7.999)
  Mean delta:    2.498 (Z=  1.387)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 127  ARG  CA
   A 127  ARG  C
   A 128  MET  N
   A 128  MET  CA        180.00    58.64   121.36  5.00e+00  5.89e+02  24.3*sigma
   A 136  HIS  CA
   A 136  HIS  C
   A 137  HIS  N
   A 137  HIS  CA        180.00    62.89   117.11  5.00e+00  5.49e+02  23.4*sigma
   A 132  LEU  CA
   A 132  LEU  C
   A 133  GLU  N
   A 133  GLU  CA        180.00   101.43    78.57  5.00e+00  2.47e+02  15.7*sigma
   A 137  HIS  CA
   A 137  HIS  C
   A 138  HIS  N
   A 138  HIS  CA        180.00   109.36    70.64  5.00e+00  2.00e+02  14.1*sigma
   A 131  ILE  CA
   A 131  ILE  C
   A 132  LEU  N
   A 132  LEU  CA        180.00   126.93    53.07  5.00e+00  1.13e+02  10.6*sigma
   A 125  LYS  CA
   A 125  LYS  C
   A 126  VAL  N
   A 126  VAL  CA        180.00   128.77    51.23  5.00e+00  1.05e+02  10.2*sigma
   A 134  HIS  CA
   A 134  HIS  C
   A 135  HIS  N
   A 135  HIS  CA        180.00   139.00    41.00  5.00e+00  6.72e+01   8.2*sigma
   A 130  SER  CA
   A 130  SER  C
   A 131  ILE  N
   A 131  ILE  CA        180.00   140.44    39.56  5.00e+00  6.26e+01   7.9*sigma
   A 129  ARG  CA
   A 129  ARG  C
   A 130  SER  N
   A 130  SER  CA          0.00    37.33   -37.33  5.00e+00  5.57e+01   7.5*sigma
   A  89  TYR  CA
   A  89  TYR  C
   A  90  SER  N
   A  90  SER  CA        180.00   147.77    32.23  5.00e+00  4.16e+01   6.4*sigma
   A  87  GLY  CA
   A  87  GLY  C
   A  88  ASP  N
   A  88  ASP  CA        180.00   151.73    28.27  5.00e+00  3.20e+01   5.7*sigma
   A 126  VAL  CA
   A 126  VAL  C
   A 127  ARG  N
   A 127  ARG  CA        180.00   152.61    27.39  5.00e+00  3.00e+01   5.5*sigma
   A 135  HIS  CA
   A 135  HIS  C
   A 136  HIS  N
   A 136  HIS  CA        180.00   154.68    25.32  5.00e+00  2.56e+01   5.1*sigma
   A  85  LYS  CA
   A  85  LYS  C
   A  86  ILE  N
   A  86  ILE  CA        180.00   155.65    24.35  5.00e+00  2.37e+01   4.9*sigma
   A  88  ASP  CA
   A  88  ASP  C
   A  89  TYR  N
   A  89  TYR  CA        180.00   156.07    23.93  5.00e+00  2.29e+01   4.8*sigma
   A  78  ILE  CA
   A  78  ILE  C
   A  79  LYS  N
   A  79  LYS  CA        180.00   158.47    21.53  5.00e+00  1.85e+01   4.3*sigma
   A 133  GLU  CA
   A 133  GLU  C
   A 134  HIS  N
   A 134  HIS  CA        180.00   159.05    20.95  5.00e+00  1.76e+01   4.2*sigma

  Min. delta:    0.012
  Max. delta:  121.362
  Mean delta:   16.066

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.002
  Max. delta:    0.745
  Mean delta:    0.151

                       ----------Planar groups----------                       

  atoms                 rms_deltas   delta_max    residual   deviation
   A  81  TYR  CB
   A  81  TYR  CG
   A  81  TYR  CD1
   A  81  TYR  CD2
   A  81  TYR  CE1
   A  81  TYR  CE2
   A  81  TYR  CZ
   A  81  TYR  OH            0.056       0.102       63.31   5.1*sigma
   A 134  HIS  CB
   A 134  HIS  CG
   A 134  HIS  ND1
   A 134  HIS  CD2
   A 134  HIS  CE1
   A 134  HIS  NE2           0.061       0.081       55.01   4.1*sigma

  Min. delta:    0.000
  Max. delta:    0.069
  Mean delta:    0.015

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

                       ----------Angle outliers----------                      

   A 127  ARG  HA , Angle CB-CA-HA, observed: 96.691, delta from target: 12.309
   A 130  SER  HA , Angle C-CA-HA, observed: 122.738, delta from target: -13.738

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.011   0.060   2241  Z= 0.613
    Angle     :  2.234  13.738   4077  Z= 1.009
    Chirality :  0.151   0.745    176
    Planarity :  0.012   0.069    326
    Dihedral  : 13.205 121.362    768
    Min Nonbonded Distance : 1.675
  
  Molprobity Statistics.
    All-atom Clashscore : 8.12
    Ramachandran Plot:
      Outliers : 13.87 %
      Allowed  : 11.68 %
      Favored  : 74.45 %
    Rotamer:
      Outliers :  0.81 %
      Allowed  :  3.23 %
      Favored  : 95.97 %
    Cbeta Deviations :  6.82 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.00 %
      Twisted Proline : 0.00 %
      Twisted General : 7.63 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -1.97 (0.76), residues: 137
    helix:  1.20 (0.61), residues: 69
    sheet:  None (None), residues: 0
    loop : -4.34 (0.74), residues: 68
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.006   0.002   HIS A 137 
   PHE   0.062   0.015   PHE A  15 
   TYR   0.124   0.026   TYR A  81 
   ARG   0.058   0.012   ARG A  21 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.006   0.002   HIS A 137 
   PHE   0.046   0.011   PHE A  15 
   TYR   0.102   0.022   TYR A  81 
   ARG   0.016   0.004   ARG A  58 

                     ----------Asn/Gln/His flips----------                     

   A 100  GLN

=================================== Summary ===================================

  Ramachandran outliers =  13.87 %
                favored =  74.45 %
  Rotamer outliers      =   0.81 %
  C-beta deviations     =     9
  Clashscore            =   8.12
  RMS(bonds)            =   0.0115
  RMS(angles)           =   2.23
  MolProbity score      =   2.24

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py

End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  atoms                 ideal   model   delta   sigma   slack  residual   deviation
   A 116  ASP  C
   A 117  PRO  N           1.34     1.45    -0.11  1.60e-02  4.73e+01   6.9*sigma
   A 116  ASP  CA
   A 116  ASP  CB          1.53     1.65    -0.12  2.00e-02  3.71e+01   6.1*sigma
   A 117  PRO  N
   A 117  PRO  CA          1.47     1.54    -0.08  1.50e-02  2.69e+01   5.2*sigma
   A 116  ASP  CA
   A 116  ASP  C           1.52     1.62    -0.09  2.10e-02  1.93e+01   4.4*sigma

  Min. delta:    0.000 (Z=  0.001)
  Max. delta:    0.122 (Z=  6.877)
  Mean delta:    0.017 (Z=  0.909)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 116  ASP  CA
   A 116  ASP  C
   A 117  PRO  N         116.90   138.24   -21.34  1.50e+00  2.02e+02  14.2*sigma
   A 116  ASP  CA
   A 116  ASP  C
   A 116  ASP  O         120.80   106.35    14.45  1.70e+00  7.23e+01   8.5*sigma
   A 117  PRO  C
   A 118  ASP  N
   A 118  ASP  CA        121.70   133.25   -11.55  1.80e+00  4.11e+01   6.4*sigma
   A 116  ASP  C
   A 117  PRO  N
   A 117  PRO  CD        125.00   101.21    23.79  4.10e+00  3.37e+01   5.8*sigma
   A 116  ASP  O
   A 116  ASP  C
   A 117  PRO  N         123.00   114.31     8.69  1.60e+00  2.95e+01   5.4*sigma
   A 117  PRO  N
   A 117  PRO  CD
   A 117  PRO  CG        103.20   111.02    -7.82  1.50e+00  2.72e+01   5.2*sigma
   A 117  PRO  C
   A 117  PRO  CA
   A 117  PRO  CB        110.10   100.56     9.54  1.90e+00  2.52e+01   5.0*sigma
   A  30  ILE  CA
   A  30  ILE  CB
   A  30  ILE  CG1       110.40   118.28    -7.88  1.70e+00  2.15e+01   4.6*sigma
   A 118  ASP  N
   A 118  ASP  CA
   A 118  ASP  C         111.00   123.87   -12.87  2.80e+00  2.11e+01   4.6*sigma
   A 113  LYS  CA
   A 113  LYS  C
   A 114  PRO  N         116.90   123.72    -6.82  1.50e+00  2.07e+01   4.5*sigma
   A  74  ASP  CA
   A  74  ASP  CB
   A  74  ASP  CG        112.60   108.13     4.47  1.00e+00  1.99e+01   4.5*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.46    -4.36  1.00e+00  1.90e+01   4.4*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.41    -4.31  1.00e+00  1.86e+01   4.3*sigma
   A 136  HIS  ND1
   A 136  HIS  CG
   A 136  HIS  CD2       106.10   110.39    -4.29  1.00e+00  1.84e+01   4.3*sigma
   A  43  HIS  ND1
   A  43  HIS  CG
   A  43  HIS  CD2       106.10   110.39    -4.29  1.00e+00  1.84e+01   4.3*sigma
   A  53  LEU  CA
   A  53  LEU  C
   A  54  PRO  N         116.90   123.26    -6.36  1.50e+00  1.80e+01   4.2*sigma
   A 134  HIS  ND1
   A 134  HIS  CG
   A 134  HIS  CD2       106.10   110.30    -4.20  1.00e+00  1.77e+01   4.2*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   110.29    -4.19  1.00e+00  1.75e+01   4.2*sigma
   A  72  ASN  OD1
   A  72  ASN  CG
   A  72  ASN  ND2       122.60   118.54     4.06  1.00e+00  1.65e+01   4.1*sigma

  Min. delta:    0.000 (Z=  0.000)
  Max. delta:   23.789 (Z= 14.227)
  Mean delta:    2.451 (Z=  1.313)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  47  ASP  CA
   A  47  ASP  C
   A  48  ALA  N
   A  48  ALA  CA        180.00    71.71   108.29  5.00e+00  4.69e+02  21.7*sigma
   A 116  ASP  CA
   A 116  ASP  C
   A 117  PRO  N
   A 117  PRO  CA        180.00   100.00    80.00  5.00e+00  2.56e+02  16.0*sigma
   A 119  LEU  CA
   A 119  LEU  C
   A 120  GLU  N
   A 120  GLU  CA        180.00   124.45    55.55  5.00e+00  1.23e+02  11.1*sigma
   A 117  PRO  CA
   A 117  PRO  C
   A 118  ASP  N
   A 118  ASP  CA        180.00   145.73    34.27  5.00e+00  4.70e+01   6.9*sigma
   A 118  ASP  CA
   A 118  ASP  C
   A 119  LEU  N
   A 119  LEU  CA        180.00   146.06    33.94  5.00e+00  4.61e+01   6.8*sigma
   A  51  ILE  CA
   A  51  ILE  C
   A  52  PRO  N
   A  52  PRO  CA        180.00  -151.66   -28.34  5.00e+00  3.21e+01   5.7*sigma
   A 122  ILE  CA
   A 122  ILE  C
   A 123  GLU  N
   A 123  GLU  CA        180.00   152.18    27.82  5.00e+00  3.10e+01   5.6*sigma
   A  48  ALA  CA
   A  48  ALA  C
   A  49  GLU  N
   A  49  GLU  CA        180.00   153.62    26.38  5.00e+00  2.78e+01   5.3*sigma
   A 132  LEU  CA
   A 132  LEU  C
   A 133  GLU  N
   A 133  GLU  CA        180.00   154.25    25.75  5.00e+00  2.65e+01   5.2*sigma
   A  89  TYR  CA
   A  89  TYR  C
   A  90  SER  N
   A  90  SER  CA        180.00   157.20    22.80  5.00e+00  2.08e+01   4.6*sigma
   A  46  SER  CA
   A  46  SER  C
   A  47  ASP  N
   A  47  ASP  CA        180.00   158.63    21.37  5.00e+00  1.83e+01   4.3*sigma
   A 120  GLU  CA
   A 120  GLU  C
   A 121  GLY  N
   A 121  GLY  CA        180.00   158.80    21.20  5.00e+00  1.80e+01   4.2*sigma
   A 124  ALA  CA
   A 124  ALA  C
   A 125  LYS  N
   A 125  LYS  CA        180.00   159.77    20.23  5.00e+00  1.64e+01   4.0*sigma

  Min. delta:    0.051
  Max. delta:  108.287
  Mean delta:   14.005

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.708
  Mean delta:    0.114

                       ----------Planar groups----------                       

  atoms                 rms_deltas   delta_max    residual   deviation
   A  91  TYR  CB
   A  91  TYR  CG
   A  91  TYR  CD1
   A  91  TYR  CD2
   A  91  TYR  CE1
   A  91  TYR  CE2
   A  91  TYR  CZ
   A  91  TYR  OH            0.116       0.094      268.59   4.7*sigma
   A  51  ILE  C
   A  52  PRO  N
   A  52  PRO  CA
   A  52  PRO  CD            0.136       0.236       29.71   4.7*sigma

  Min. delta:    0.000
  Max. delta:    0.177
  Mean delta:    0.021

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

                       ----------Angle outliers----------                      

   A 119  LEU  HA , Angle N-CA-HA, observed: 97.974, delta from target: 12.026
   A  99  LEU  HG , Angle CD2-CG-HG, observed: 121.060, delta from target: -13.060
   A 117  PRO  HA , Angle CB-CA-HA, observed: 125.223, delta from target: -16.223

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.012   0.122   2241  Z= 0.647
    Angle     :  2.110  23.789   4077  Z= 0.945
    Chirality :  0.114   0.708    176
    Planarity :  0.017   0.177    326
    Dihedral  : 11.975 108.287    768
    Min Nonbonded Distance : 1.653
  
  Molprobity Statistics.
    All-atom Clashscore : 4.51
    Ramachandran Plot:
      Outliers :  6.57 %
      Allowed  : 14.60 %
      Favored  : 78.83 %
    Rotamer:
      Outliers :  0.81 %
      Allowed  :  3.23 %
      Favored  : 95.97 %
    Cbeta Deviations :  0.76 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.00 %
      Twisted Proline : 14.29 %
      Twisted General : 3.05 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -1.41 (0.68), residues: 137
    helix:  1.50 (0.61), residues: 64
    sheet:  None (None), residues: 0
    loop : -3.48 (0.58), residues: 73
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.005   0.001   HIS A 139 
   PHE   0.081   0.019   PHE A  67 
   TYR   0.263   0.029   TYR A  91 
   ARG   0.025   0.005   ARG A  58 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.005   0.001   HIS A 139 
   PHE   0.042   0.014   PHE A  67 
   TYR   0.215   0.031   TYR A  91 
   ARG   0.012   0.002   ARG A  58 

                     ----------Asn/Gln/His flips----------                     

  No backwards Asn/Gln/His sidechains found.

=================================== Summary ===================================


============================== Collecting inputs ==============================

  Ramachandran outliers =   6.57 %
                favored =  78.83 %
  Rotamer outliers      =   0.81 %
  C-beta deviations     =     1
  Clashscore            =   4.51
  RMS(bonds)            =   0.0122
  RMS(angles)           =   2.11
  MolProbity score      =   1.98

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py
Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  


End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000 (Z=  0.001)
  Max. delta:    0.058 (Z=  3.603)
  Mean delta:    0.016 (Z=  0.846)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  51  ILE  CA
   A  51  ILE  C
   A  52  PRO  N         116.90   126.33    -9.43  1.50e+00  3.95e+01   6.3*sigma
   A 117  PRO  N
   A 117  PRO  CA
   A 117  PRO  CB        103.00    96.75     6.25  1.10e+00  3.23e+01   5.7*sigma
   A 116  ASP  C
   A 116  ASP  CA
   A 116  ASP  CB        110.10   120.58   -10.48  1.90e+00  3.04e+01   5.5*sigma
   A 117  PRO  N
   A 117  PRO  CA
   A 117  PRO  C         112.10   124.70   -12.60  2.50e+00  2.54e+01   5.0*sigma
   A 138  HIS  ND1
   A 138  HIS  CG
   A 138  HIS  CD2       106.10   110.65    -4.55  1.00e+00  2.07e+01   4.5*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   110.60    -4.50  1.00e+00  2.03e+01   4.5*sigma
   A 118  ASP  CA
   A 118  ASP  CB
   A 118  ASP  CG        112.60   117.02    -4.42  1.00e+00  1.95e+01   4.4*sigma
   A  43  HIS  ND1
   A  43  HIS  CG
   A  43  HIS  CD2       106.10   110.52    -4.42  1.00e+00  1.95e+01   4.4*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.50    -4.40  1.00e+00  1.94e+01   4.4*sigma
   A 136  HIS  ND1
   A 136  HIS  CG
   A 136  HIS  CD2       106.10   110.43    -4.33  1.00e+00  1.87e+01   4.3*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.33    -4.23  1.00e+00  1.79e+01   4.2*sigma
   A  17  SER  C
   A  18  VAL  N
   A  18  VAL  CA        121.70   129.25    -7.55  1.80e+00  1.76e+01   4.2*sigma
   A 134  HIS  ND1
   A 134  HIS  CG
   A 134  HIS  CD2       106.10   110.29    -4.19  1.00e+00  1.76e+01   4.2*sigma
   A  53  LEU  CA
   A  53  LEU  C
   A  54  PRO  N         116.90   123.10    -6.20  1.50e+00  1.71e+01   4.1*sigma
   A 116  ASP  CA
   A 116  ASP  CB
   A 116  ASP  CG        112.60   116.63    -4.03  1.00e+00  1.62e+01   4.0*sigma

  Min. delta:    0.001 (Z=  0.001)
  Max. delta:   12.603 (Z=  6.286)
  Mean delta:    2.139 (Z=  1.196)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 116  ASP  CA
   A 116  ASP  C
   A 117  PRO  N
   A 117  PRO  CA        180.00  -141.36   -38.64  5.00e+00  5.97e+01   7.7*sigma
   A 100  GLN  CA
   A 100  GLN  C
   A 101  LYS  N
   A 101  LYS  CA        180.00   155.43    24.57  5.00e+00  2.42e+01   4.9*sigma
   A  93  LEU  CA
   A  93  LEU  C
   A  94  GLY  N
   A  94  GLY  CA        180.00   157.87    22.13  5.00e+00  1.96e+01   4.4*sigma
   A  51  ILE  CA
   A  51  ILE  C
   A  52  PRO  N
   A  52  PRO  CA        180.00   158.54    21.46  5.00e+00  1.84e+01   4.3*sigma

  Min. delta:    0.007
  Max. delta:   69.289
  Mean delta:   11.291

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.422
  Mean delta:    0.101

                       ----------Planar groups----------                       

  atoms                 rms_deltas   delta_max    residual   deviation
   A  45  PHE  CB
   A  45  PHE  CG
   A  45  PHE  CD1
   A  45  PHE  CD2
   A  45  PHE  CE1
   A  45  PHE  CE2
   A  45  PHE  CZ            0.057       0.095       56.10   4.7*sigma

  Min. delta:    0.000
  Max. delta:    0.057
  Mean delta:    0.013

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

                       ----------Angle outliers----------                      

   A 117  PRO  HA , Angle CB-CA-HA, observed: 124.840, delta from target: -15.840

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.011   0.058   2241  Z= 0.602
    Angle     :  1.947  15.840   4077  Z= 0.877
    Chirality :  0.101   0.422    176
    Planarity :  0.011   0.090    326
    Dihedral  : 10.391  69.289    768
    Min Nonbonded Distance : 1.779
  
  Molprobity Statistics.
    All-atom Clashscore : 2.26
    Ramachandran Plot:
      Outliers :  2.19 %
      Allowed  : 11.68 %
      Favored  : 86.13 %
    Rotamer:
      Outliers :  0.00 %
      Allowed  :  0.00 %
      Favored  : 100.00 %
    Cbeta Deviations :  2.27 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.00 %
      Twisted Proline : 14.29 %
      Twisted General : 0.00 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -1.16 (0.72), residues: 137
    helix:  1.32 (0.60), residues: 72
    sheet:  None (None), residues: 0
    loop : -3.46 (0.68), residues: 65
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.004   0.001   HIS A 138 
   PHE   0.202   0.025   PHE A  45 
   TYR   0.092   0.016   TYR A 105 
   ARG   0.060   0.014   ARG A  58 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.004   0.001   HIS A 138 
   PHE   0.095   0.018   PHE A  45 
   TYR   0.067   0.015   TYR A 105 
   ARG   0.031   0.007   ARG A  58 

                     ----------Asn/Gln/His flips----------                     

  No backwards Asn/Gln/His sidechains found.

=================================== Summary ===================================


============================== Collecting inputs ==============================

  Ramachandran outliers =   2.19 %
                favored =  86.13 %
  Rotamer outliers      =   0.00 %
  C-beta deviations     =     3
  Clashscore            =   2.26
  RMS(bonds)            =   0.0115
  RMS(angles)           =   1.95
  MolProbity score      =   1.64

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py

============================== Collecting inputs ==============================


============================== Collecting inputs ==============================


End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000 (Z=  0.000)
  Max. delta:    0.049 (Z=  3.308)
  Mean delta:    0.016 (Z=  0.853)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 101  LYS  CA
   A 101  LYS  C
   A 102  PRO  N         116.90   126.22    -9.32  1.50e+00  3.86e+01   6.2*sigma
   A 113  LYS  CA
   A 113  LYS  C
   A 114  PRO  N         116.90   126.09    -9.19  1.50e+00  3.76e+01   6.1*sigma
   A  77  ILE  C
   A  78  ILE  N
   A  78  ILE  CA        121.70   130.99    -9.29  1.80e+00  2.66e+01   5.2*sigma
   A  97  SER  N
   A  97  SER  CA
   A  97  SER  CB        110.50   119.12    -8.62  1.70e+00  2.57e+01   5.1*sigma
   A  50  TYR  CA
   A  50  TYR  C
   A  50  TYR  O         120.80   112.23     8.57  1.70e+00  2.54e+01   5.0*sigma
   A  50  TYR  CA
   A  50  TYR  C
   A  51  ILE  N         116.20   125.44    -9.24  2.00e+00  2.13e+01   4.6*sigma
   A  50  TYR  C
   A  51  ILE  N
   A  51  ILE  CA        121.70   129.88    -8.18  1.80e+00  2.07e+01   4.5*sigma
   A  51  ILE  N
   A  51  ILE  CA
   A  51  ILE  CB        111.50   119.17    -7.67  1.70e+00  2.04e+01   4.5*sigma
   A  15  PHE  CA
   A  15  PHE  CB
   A  15  PHE  CG        113.80   109.37     4.43  1.00e+00  1.96e+01   4.4*sigma
   A  43  HIS  ND1
   A  43  HIS  CG
   A  43  HIS  CD2       106.10   110.52    -4.42  1.00e+00  1.95e+01   4.4*sigma
   A  51  ILE  CA
   A  51  ILE  C
   A  52  PRO  N         116.90   123.46    -6.56  1.50e+00  1.91e+01   4.4*sigma
   A 136  HIS  ND1
   A 136  HIS  CG
   A 136  HIS  CD2       106.10   110.35    -4.25  1.00e+00  1.81e+01   4.2*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   110.34    -4.24  1.00e+00  1.80e+01   4.2*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.30    -4.20  1.00e+00  1.76e+01   4.2*sigma
   A  88  ASP  CA
   A  88  ASP  CB
   A  88  ASP  CG        112.60   108.40     4.20  1.00e+00  1.76e+01   4.2*sigma
   A  53  LEU  CA
   A  53  LEU  C
   A  54  PRO  N         116.90   123.14    -6.24  1.50e+00  1.73e+01   4.2*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.20    -4.10  1.00e+00  1.68e+01   4.1*sigma

  Min. delta:    0.000 (Z=  0.000)
  Max. delta:   10.015 (Z=  6.214)
  Mean delta:    2.197 (Z=  1.226)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  97  SER  CA
   A  97  SER  C
   A  98  SER  N
   A  98  SER  CA        180.00   147.47    32.53  5.00e+00  4.23e+01   6.5*sigma

  Min. delta:    0.021
  Max. delta:   83.923
  Mean delta:   10.917

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.512
  Mean delta:    0.114

                       ----------Planar groups----------                       

  atoms                 rms_deltas   delta_max    residual   deviation
   A  89  TYR  CB
   A  89  TYR  CG
   A  89  TYR  CD1
   A  89  TYR  CD2
   A  89  TYR  CE1
   A  89  TYR  CE2
   A  89  TYR  CZ
   A  89  TYR  OH            0.071       0.137      101.54   6.8*sigma
   A  91  TYR  CB
   A  91  TYR  CG
   A  91  TYR  CD1
   A  91  TYR  CD2
   A  91  TYR  CE1
   A  91  TYR  CE2
   A  91  TYR  CZ
   A  91  TYR  OH            0.063       0.112       78.61   5.6*sigma

  Min. delta:    0.000
  Max. delta:    0.071
  Mean delta:    0.014

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

                       ----------Angle outliers----------                      

   A  97  SER  HA , Angle N-CA-HA, observed: 97.535, delta from target: 12.465
   A  51  ILE  HA , Angle N-CA-HA, observed: 96.162, delta from target: 13.838

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.011   0.049   2241  Z= 0.607
    Angle     :  1.992  13.838   4077  Z= 0.897
    Chirality :  0.114   0.512    176
    Planarity :  0.012   0.084    326
    Dihedral  :  9.303  83.923    768
    Min Nonbonded Distance : 1.614
  
  Molprobity Statistics.
    All-atom Clashscore : 4.06
    Ramachandran Plot:
      Outliers :  5.11 %
      Allowed  :  5.84 %
      Favored  : 89.05 %
    Rotamer:
      Outliers :  0.81 %
      Allowed  :  1.61 %
      Favored  : 97.58 %
    Cbeta Deviations :  3.03 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.00 %
      Twisted Proline : 0.00 %
      Twisted General : 0.76 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -1.64 (0.66), residues: 137
    helix:  1.33 (0.63), residues: 63
    sheet:  None (None), residues: 0
    loop : -3.56 (0.53), residues: 74
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.005   0.002   HIS A 137 
   PHE   0.150   0.027   PHE A  15 
   TYR   0.173   0.034   TYR A  89 
   ARG   0.028   0.007   ARG A  21 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.005   0.002   HIS A 137 
   PHE   0.079   0.023   PHE A  15 
   TYR   0.137   0.034   TYR A  89 
   ARG   0.012   0.003   ARG A  21 

                     ----------Asn/Gln/His flips----------                     

  No backwards Asn/Gln/His sidechains found.

=================================== Summary ===================================


End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000 (Z=  0.000)
  Max. delta:    0.051 (Z=  3.598)
  Mean delta:    0.016 (Z=  0.830)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 137  HIS  C
   A 138  HIS  N
   A 138  HIS  CA        121.70   138.27   -16.57  1.80e+00  8.48e+01   9.2*sigma
   A  51  ILE  CA
   A  51  ILE  C
   A  52  PRO  N         116.90   128.47   -11.57  1.50e+00  5.95e+01   7.7*sigma
   A 137  HIS  N
   A 137  HIS  CA
   A 137  HIS  CB        110.50   119.85    -9.35  1.70e+00  3.02e+01   5.5*sigma
   A  90  SER  C
   A  90  SER  CA
   A  90  SER  CB        110.10   100.00    10.10  1.90e+00  2.83e+01   5.3*sigma
   A 137  HIS  CA
   A 137  HIS  CB
   A 137  HIS  CG        113.80   119.01    -5.21  1.00e+00  2.71e+01   5.2*sigma
   A 137  HIS  O
   A 137  HIS  C
   A 138  HIS  N         123.00   115.07     7.93  1.60e+00  2.46e+01   5.0*sigma
   A 136  HIS  CA
   A 136  HIS  CB
   A 136  HIS  CG        113.80   118.75    -4.95  1.00e+00  2.45e+01   4.9*sigma
   A  85  LYS  CG
   A  85  LYS  CD
   A  85  LYS  CE        111.30   122.53   -11.23  2.30e+00  2.38e+01   4.9*sigma
   A  51  ILE  O
   A  51  ILE  C
   A  52  PRO  N         123.00   115.23     7.77  1.60e+00  2.36e+01   4.9*sigma
   A 111  TYR  O
   A 111  TYR  C
   A 112  VAL  N         123.00   115.34     7.66  1.60e+00  2.29e+01   4.8*sigma
   A 138  HIS  ND1
   A 138  HIS  CG
   A 138  HIS  CD2       106.10   110.86    -4.76  1.00e+00  2.26e+01   4.8*sigma
   A  63  LYS  CB
   A  63  LYS  CG
   A  63  LYS  CD        111.30   121.88   -10.58  2.30e+00  2.12e+01   4.6*sigma
   A  77  ILE  CA
   A  77  ILE  CB
   A  77  ILE  CG2       110.50   118.25    -7.75  1.70e+00  2.08e+01   4.6*sigma
   A  53  LEU  CA
   A  53  LEU  C
   A  54  PRO  N         116.90   123.62    -6.72  1.50e+00  2.01e+01   4.5*sigma
   A 135  HIS  C
   A 136  HIS  N
   A 136  HIS  CA        121.70   129.67    -7.97  1.80e+00  1.96e+01   4.4*sigma
   A  43  HIS  ND1
   A  43  HIS  CG
   A  43  HIS  CD2       106.10   110.51    -4.41  1.00e+00  1.95e+01   4.4*sigma
   A 139  HIS  CA
   A 139  HIS  CB
   A 139  HIS  CG        113.80   118.20    -4.40  1.00e+00  1.94e+01   4.4*sigma
   A  95  ASP  C
   A  96  GLY  N
   A  96  GLY  CA        121.70   129.57    -7.87  1.80e+00  1.91e+01   4.4*sigma
   A  57  VAL  C
   A  57  VAL  CA
   A  57  VAL  CB        111.40   103.10     8.30  1.90e+00  1.91e+01   4.4*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   110.37    -4.27  1.00e+00  1.82e+01   4.3*sigma
   A 137  HIS  CA
   A 137  HIS  C
   A 138  HIS  N         116.20   124.69    -8.49  2.00e+00  1.80e+01   4.2*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.33    -4.23  1.00e+00  1.79e+01   4.2*sigma
   A 112  VAL  CA
   A 112  VAL  CB
   A 112  VAL  CG1       110.40   117.57    -7.17  1.70e+00  1.78e+01   4.2*sigma
   A 138  HIS  CB
   A 138  HIS  CG
   A 138  HIS  ND1       122.70   116.50     6.20  1.50e+00  1.71e+01   4.1*sigma
   A 132  LEU  N
   A 132  LEU  CA
   A 132  LEU  C         111.00   122.56   -11.56  2.80e+00  1.70e+01   4.1*sigma
   A  14  VAL  CA
   A  14  VAL  CB
   A  14  VAL  CG1       110.40   117.41    -7.01  1.70e+00  1.70e+01   4.1*sigma
   A  42  GLY  C
   A  43  HIS  N
   A  43  HIS  CA        121.70   129.08    -7.38  1.80e+00  1.68e+01   4.1*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.14    -4.04  1.00e+00  1.63e+01   4.0*sigma
   A  15  PHE  CA
   A  15  PHE  CB
   A  15  PHE  CG        113.80   109.78     4.02  1.00e+00  1.61e+01   4.0*sigma

  Min. delta:    0.001 (Z=  0.000)
  Max. delta:   16.575 (Z=  9.208)
  Mean delta:    2.536 (Z=  1.393)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 126  VAL  CA
   A 126  VAL  C
   A 127  ARG  N
   A 127  ARG  CA        180.00   138.62    41.38  5.00e+00  6.85e+01   8.3*sigma
   A 131  ILE  CA
   A 131  ILE  C
   A 132  LEU  N
   A 132  LEU  CA        180.00   139.08    40.92  5.00e+00  6.70e+01   8.2*sigma
   A  53  LEU  CA
   A  53  LEU  C
   A  54  PRO  N
   A  54  PRO  CA        180.00   140.03    39.97  5.00e+00  6.39e+01   8.0*sigma
   A 135  HIS  CA
   A 135  HIS  C
   A 136  HIS  N
   A 136  HIS  CA        180.00   153.55    26.45  5.00e+00  2.80e+01   5.3*sigma
   A 134  HIS  CA
   A 134  HIS  C
   A 135  HIS  N
   A 135  HIS  CA        180.00   156.27    23.73  5.00e+00  2.25e+01   4.7*sigma
   A 136  HIS  CA
   A 136  HIS  C
   A 137  HIS  N
   A 137  HIS  CA        180.00   158.60    21.40  5.00e+00  1.83e+01   4.3*sigma
   A 137  HIS  CA
   A 137  HIS  C
   A 138  HIS  N
   A 138  HIS  CA          0.00    20.45   -20.45  5.00e+00  1.67e+01   4.1*sigma

  Min. delta:    0.022
  Max. delta:   61.604
  Mean delta:   10.899

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.453
  Mean delta:    0.123

                       ----------Planar groups----------                       

  atoms                 rms_deltas   delta_max    residual   deviation
   A  91  TYR  CB
   A  91  TYR  CG
   A  91  TYR  CD1
   A  91  TYR  CD2
   A  91  TYR  CE1
   A  91  TYR  CE2
   A  91  TYR  CZ
   A  91  TYR  OH            0.171       0.160      582.43   8.0*sigma
   A 111  TYR  CB
   A 111  TYR  CG
   A 111  TYR  CD1
   A 111  TYR  CD2
   A 111  TYR  CE1
   A 111  TYR  CE2
   A 111  TYR  CZ
   A 111  TYR  OH            0.100       0.135      201.72   6.8*sigma
   A  12  TYR  CB
   A  12  TYR  CG
   A  12  TYR  CD1
   A  12  TYR  CD2
   A  12  TYR  CE1
   A  12  TYR  CE2
   A  12  TYR  CZ
   A  12  TYR  OH            0.072       0.119      103.75   5.9*sigma
   A  15  PHE  CB
   A  15  PHE  CG
   A  15  PHE  CD1
   A  15  PHE  CD2
   A  15  PHE  CE1
   A  15  PHE  CE2
   A  15  PHE  CZ            0.057       0.085       56.59   4.2*sigma

  Min. delta:    0.000
  Max. delta:    0.171
  Mean delta:    0.021

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

                       ----------Angle outliers----------                      

   A  76  SER  HA , Angle N-CA-HA, observed: 97.639, delta from target: 12.361

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.011   0.051   2241  Z= 0.591
    Angle     :  2.233  16.575   4077  Z= 1.008
    Chirality :  0.123   0.453    176
    Planarity :  0.017   0.165    326
    Dihedral  :  9.921  61.604    768
    Min Nonbonded Distance : 1.672
  
  Molprobity Statistics.
    All-atom Clashscore : 7.67
    Ramachandran Plot:
      Outliers :  9.49 %
      Allowed  :  9.49 %
      Favored  : 81.02 %
    Rotamer:
      Outliers :  0.00 %
      Allowed  :  1.61 %
      Favored  : 98.39 %
    Cbeta Deviations :  4.55 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.76 %
      Twisted Proline : 14.29 %
      Twisted General : 1.53 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -1.66 (0.71), residues: 137
    helix:  0.92 (0.58), residues: 58
    sheet: -2.27 (1.83), residues: 10
    loop : -2.86 (0.77), residues: 69
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.008   0.001   HIS A 137 
   PHE   0.135   0.039   PHE A  15 
   TYR   0.381   0.050   TYR A  91 
   ARG   0.019   0.005   ARG A  58 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.008   0.001   HIS A 137 
   PHE   0.085   0.030   PHE A  15 
   TYR   0.308   0.051   TYR A  91 
   ARG   0.010   0.002   ARG A  21 

                     ----------Asn/Gln/His flips----------                     

  No backwards Asn/Gln/His sidechains found.

=================================== Summary ===================================


End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000 (Z=  0.001)
  Max. delta:    0.062 (Z=  3.774)
  Mean delta:    0.017 (Z=  0.899)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 116  ASP  CA
   A 116  ASP  C
   A 117  PRO  N         116.90   130.42   -13.52  1.50e+00  8.12e+01   9.0*sigma
   A 135  HIS  C
   A 136  HIS  N
   A 136  HIS  CA        121.70   136.93   -15.23  1.80e+00  7.16e+01   8.5*sigma
   A 133  GLU  C
   A 134  HIS  N
   A 134  HIS  CA        121.70   135.06   -13.36  1.80e+00  5.51e+01   7.4*sigma
   A 114  PRO  N
   A 114  PRO  CA
   A 114  PRO  C         112.10   129.56   -17.46  2.50e+00  4.88e+01   7.0*sigma
   A 138  HIS  CA
   A 138  HIS  CB
   A 138  HIS  CG        113.80   120.72    -6.92  1.00e+00  4.79e+01   6.9*sigma
   A 136  HIS  CA
   A 136  HIS  CB
   A 136  HIS  CG        113.80   120.71    -6.91  1.00e+00  4.78e+01   6.9*sigma
   A 137  HIS  C
   A 138  HIS  N
   A 138  HIS  CA        121.70   134.07   -12.37  1.80e+00  4.72e+01   6.9*sigma
   A 134  HIS  CA
   A 134  HIS  CB
   A 134  HIS  CG        113.80   120.50    -6.70  1.00e+00  4.48e+01   6.7*sigma
   A 116  ASP  N
   A 116  ASP  CA
   A 116  ASP  CB        110.50   100.49    10.01  1.70e+00  3.47e+01   5.9*sigma
   A 133  GLU  O
   A 133  GLU  C
   A 134  HIS  N         123.00   113.63     9.37  1.60e+00  3.43e+01   5.9*sigma
   A 134  HIS  CB
   A 134  HIS  CG
   A 134  HIS  ND1       122.70   113.94     8.76  1.50e+00  3.41e+01   5.8*sigma
   A 136  HIS  N
   A 136  HIS  CA
   A 136  HIS  CB        110.50   120.41    -9.91  1.70e+00  3.40e+01   5.8*sigma
   A 116  ASP  O
   A 116  ASP  C
   A 117  PRO  N         123.00   113.72     9.28  1.60e+00  3.36e+01   5.8*sigma
   A  98  SER  C
   A  99  LEU  N
   A  99  LEU  CA        121.70   131.70   -10.00  1.80e+00  3.09e+01   5.6*sigma
   A 101  LYS  CA
   A 101  LYS  C
   A 102  PRO  N         116.90   125.12    -8.22  1.50e+00  3.00e+01   5.5*sigma
   A  45  PHE  CA
   A  45  PHE  CB
   A  45  PHE  CG        113.80   108.62     5.18  1.00e+00  2.68e+01   5.2*sigma
   A 134  HIS  N
   A 134  HIS  CA
   A 134  HIS  CB        110.50   119.25    -8.75  1.70e+00  2.65e+01   5.1*sigma
   A 133  GLU  N
   A 133  GLU  CA
   A 133  GLU  CB        110.50   118.91    -8.41  1.70e+00  2.45e+01   4.9*sigma
   A  51  ILE  CA
   A  51  ILE  C
   A  52  PRO  N         116.90   124.32    -7.42  1.50e+00  2.45e+01   4.9*sigma
   A  18  VAL  CA
   A  18  VAL  CB
   A  18  VAL  CG1       110.40   118.71    -8.31  1.70e+00  2.39e+01   4.9*sigma
   A 137  HIS  O
   A 137  HIS  C
   A 138  HIS  N         123.00   115.35     7.65  1.60e+00  2.29e+01   4.8*sigma
   A 135  HIS  CB
   A 135  HIS  CG
   A 135  HIS  ND1       122.70   115.60     7.10  1.50e+00  2.24e+01   4.7*sigma
   A  76  SER  C
   A  77  ILE  N
   A  77  ILE  CA        121.70   130.14    -8.44  1.80e+00  2.20e+01   4.7*sigma
   A  13  SER  C
   A  13  SER  CA
   A  13  SER  CB        110.10   101.28     8.82  1.90e+00  2.16e+01   4.6*sigma
   A 138  HIS  ND1
   A 138  HIS  CG
   A 138  HIS  CD2       106.10   110.68    -4.58  1.00e+00  2.10e+01   4.6*sigma
   A 139  HIS  CA
   A 139  HIS  CB
   A 139  HIS  CG        113.80   118.35    -4.55  1.00e+00  2.07e+01   4.6*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.60    -4.50  1.00e+00  2.02e+01   4.5*sigma
   A  97  SER  C
   A  98  SER  N
   A  98  SER  CA        121.70   129.66    -7.96  1.80e+00  1.95e+01   4.4*sigma
   A 136  HIS  CB
   A 136  HIS  CG
   A 136  HIS  ND1       122.70   116.13     6.57  1.50e+00  1.92e+01   4.4*sigma
   A 133  GLU  CA
   A 133  GLU  C
   A 134  HIS  N         116.20   124.87    -8.67  2.00e+00  1.88e+01   4.3*sigma
   A 138  HIS  C
   A 138  HIS  CA
   A 138  HIS  CB        110.10   101.92     8.18  1.90e+00  1.85e+01   4.3*sigma
   A  43  HIS  ND1
   A  43  HIS  CG
   A  43  HIS  CD2       106.10   110.38    -4.28  1.00e+00  1.83e+01   4.3*sigma
   A 135  HIS  N
   A 135  HIS  CA
   A 135  HIS  CB        110.50   117.77    -7.27  1.70e+00  1.83e+01   4.3*sigma
   A  76  SER  C
   A  76  SER  CA
   A  76  SER  CB        110.10   101.99     8.11  1.90e+00  1.82e+01   4.3*sigma
   A   1  MET  C
   A   1  MET  CA
   A   1  MET  CB        110.10   118.19    -8.09  1.90e+00  1.81e+01   4.3*sigma
   A 135  HIS  O
   A 135  HIS  C
   A 136  HIS  N         123.00   116.34     6.66  1.60e+00  1.73e+01   4.2*sigma
   A  50  TYR  C
   A  51  ILE  N
   A  51  ILE  CA        121.70   129.18    -7.48  1.80e+00  1.73e+01   4.2*sigma
   A 136  HIS  C
   A 136  HIS  CA
   A 136  HIS  CB        110.10   102.28     7.82  1.90e+00  1.69e+01   4.1*sigma
   A  43  HIS  CA
   A  43  HIS  CB
   A  43  HIS  CG        113.80   117.91    -4.11  1.00e+00  1.69e+01   4.1*sigma
   A 139  HIS  CB
   A 139  HIS  CG
   A 139  HIS  CD2       131.20   125.88     5.32  1.30e+00  1.68e+01   4.1*sigma
   A  61  LEU  CD1
   A  61  LEU  CG
   A  61  LEU  CD2       110.80   101.82     8.98  2.20e+00  1.66e+01   4.1*sigma
   A  77  ILE  N
   A  77  ILE  CA
   A  77  ILE  CB        111.50   104.59     6.91  1.70e+00  1.65e+01   4.1*sigma

  Min. delta:    0.001 (Z=  0.001)
  Max. delta:   17.457 (Z=  9.010)
  Mean delta:    2.703 (Z=  1.511)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 114  PRO  CA
   A 114  PRO  C
   A 115  ALA  N
   A 115  ALA  CA        180.00   149.81    30.19  5.00e+00  3.65e+01   6.0*sigma
   A 113  LYS  CA
   A 113  LYS  C
   A 114  PRO  N
   A 114  PRO  CA        180.00  -150.34   -29.66  5.00e+00  3.52e+01   5.9*sigma
   A 137  HIS  CA
   A 137  HIS  C
   A 138  HIS  N
   A 138  HIS  CA          0.00    29.12   -29.12  5.00e+00  3.39e+01   5.8*sigma
   A 133  GLU  CA
   A 133  GLU  C
   A 134  HIS  N
   A 134  HIS  CA          0.00    28.82   -28.82  5.00e+00  3.32e+01   5.8*sigma
   A 136  HIS  CA
   A 136  HIS  C
   A 137  HIS  N
   A 137  HIS  CA        180.00   156.59    23.41  5.00e+00  2.19e+01   4.7*sigma
   A 115  ALA  CA
   A 115  ALA  C
   A 116  ASP  N
   A 116  ASP  CA        180.00   156.89    23.11  5.00e+00  2.14e+01   4.6*sigma
   A  13  SER  CA
   A  13  SER  C
   A  14  VAL  N
   A  14  VAL  CA        180.00   157.72    22.28  5.00e+00  1.99e+01   4.5*sigma
   A 130  SER  CA
   A 130  SER  C
   A 131  ILE  N
   A 131  ILE  CA        180.00   159.90    20.10  5.00e+00  1.62e+01   4.0*sigma

  Min. delta:    0.021
  Max. delta:   78.300
  Mean delta:   11.589

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.591
  Mean delta:    0.131

                       ----------Planar groups----------                       

  atoms                 rms_deltas   delta_max    residual   deviation
   A 134  HIS  CB
   A 134  HIS  CG
   A 134  HIS  ND1
   A 134  HIS  CD2
   A 134  HIS  CE1
   A 134  HIS  NE2           0.115       0.156      199.03   7.8*sigma
   A 136  HIS  CB
   A 136  HIS  CG
   A 136  HIS  ND1
   A 136  HIS  CD2
   A 136  HIS  CE1
   A 136  HIS  NE2           0.090       0.121      122.80   6.1*sigma
   A 138  HIS  CB
   A 138  HIS  CG
   A 138  HIS  ND1
   A 138  HIS  CD2
   A 138  HIS  CE1
   A 138  HIS  NE2           0.084       0.114      106.82   5.7*sigma

  Min. delta:    0.000
  Max. delta:    0.115
  Mean delta:    0.021

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

                       ----------Angle outliers----------                      

   A 136  HIS  HA , Angle C-CA-HA, observed: 121.924, delta from target: -12.924
   A 114  PRO  HA , Angle C-CA-HA, observed: 94.318, delta from target: 14.682
   A 114  PRO  HA , Angle CB-CA-HA, observed: 125.575, delta from target: -16.575

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.012   0.062   2241  Z= 0.640
    Angle     :  2.322  17.457   4077  Z= 1.074
    Chirality :  0.131   0.591    176
    Planarity :  0.016   0.108    326
    Dihedral  : 10.474  78.300    768
    Min Nonbonded Distance : 1.627
  
  Molprobity Statistics.
    All-atom Clashscore : 8.57
    Ramachandran Plot:
      Outliers : 10.95 %
      Allowed  :  7.30 %
      Favored  : 81.75 %
    Rotamer:
      Outliers :  0.81 %
      Allowed  :  2.42 %
      Favored  : 96.77 %
    Cbeta Deviations :  6.06 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 2.29 %
      Twisted Proline : 0.00 %
      Twisted General : 0.76 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -1.20 (0.71), residues: 137
    helix:  1.21 (0.67), residues: 63
    sheet:  None (None), residues: 0
    loop : -2.80 (0.65), residues: 74
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.007   0.002   HIS A  43 
   PHE   0.117   0.024   PHE A  15 
   TYR   0.119   0.017   TYR A 105 
   ARG   0.065   0.012   ARG A  58 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.007   0.002   HIS A  43 
   PHE   0.044   0.015   PHE A  15 
   TYR   0.051   0.014   TYR A 105 
   ARG   0.018   0.004   ARG A  21 

                     ----------Asn/Gln/His flips----------                     

   A 134  HIS
   A 137  HIS

=================================== Summary ===================================

  Ramachandran outliers =   9.49 %
                favored =  81.02 %
  Rotamer outliers      =   0.00 %
  C-beta deviations     =     6
  Clashscore            =   7.67
  RMS(bonds)            =   0.0111
  RMS(angles)           =   2.23
  MolProbity score      =   2.14

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py
  Ramachandran outliers =   5.11 %
                favored =  89.05 %
  Rotamer outliers      =   0.81 %
  C-beta deviations     =     4
  Clashscore            =   4.06
  RMS(bonds)            =   0.0114
  RMS(angles)           =   1.99
  MolProbity score      =   1.77

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py

============================== Collecting inputs ==============================


End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000 (Z=  0.001)
  Max. delta:    0.062 (Z=  3.774)
  Mean delta:    0.017 (Z=  0.899)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 116  ASP  CA
   A 116  ASP  C
   A 117  PRO  N         116.90   130.42   -13.52  1.50e+00  8.12e+01   9.0*sigma
   A 135  HIS  C
   A 136  HIS  N
   A 136  HIS  CA        121.70   136.93   -15.23  1.80e+00  7.16e+01   8.5*sigma
   A 133  GLU  C
   A 134  HIS  N
   A 134  HIS  CA        121.70   135.06   -13.36  1.80e+00  5.51e+01   7.4*sigma
   A 114  PRO  N
   A 114  PRO  CA
   A 114  PRO  C         112.10   129.56   -17.46  2.50e+00  4.88e+01   7.0*sigma
   A 138  HIS  CA
   A 138  HIS  CB
   A 138  HIS  CG        113.80   120.72    -6.92  1.00e+00  4.79e+01   6.9*sigma
   A 136  HIS  CA
   A 136  HIS  CB
   A 136  HIS  CG        113.80   120.71    -6.91  1.00e+00  4.78e+01   6.9*sigma
   A 137  HIS  C
   A 138  HIS  N
   A 138  HIS  CA        121.70   134.07   -12.37  1.80e+00  4.72e+01   6.9*sigma
   A 134  HIS  CA
   A 134  HIS  CB
   A 134  HIS  CG        113.80   120.50    -6.70  1.00e+00  4.48e+01   6.7*sigma
   A 116  ASP  N
   A 116  ASP  CA
   A 116  ASP  CB        110.50   100.49    10.01  1.70e+00  3.47e+01   5.9*sigma
   A 133  GLU  O
   A 133  GLU  C
   A 134  HIS  N         123.00   113.63     9.37  1.60e+00  3.43e+01   5.9*sigma
   A 134  HIS  CB
   A 134  HIS  CG
   A 134  HIS  ND1       122.70   113.94     8.76  1.50e+00  3.41e+01   5.8*sigma
   A 136  HIS  N
   A 136  HIS  CA
   A 136  HIS  CB        110.50   120.41    -9.91  1.70e+00  3.40e+01   5.8*sigma
   A 116  ASP  O
   A 116  ASP  C
   A 117  PRO  N         123.00   113.72     9.28  1.60e+00  3.36e+01   5.8*sigma
   A  98  SER  C
   A  99  LEU  N
   A  99  LEU  CA        121.70   131.70   -10.00  1.80e+00  3.09e+01   5.6*sigma
   A 101  LYS  CA
   A 101  LYS  C
   A 102  PRO  N         116.90   125.12    -8.22  1.50e+00  3.00e+01   5.5*sigma
   A  45  PHE  CA
   A  45  PHE  CB
   A  45  PHE  CG        113.80   108.62     5.18  1.00e+00  2.68e+01   5.2*sigma
   A 134  HIS  N
   A 134  HIS  CA
   A 134  HIS  CB        110.50   119.25    -8.75  1.70e+00  2.65e+01   5.1*sigma
   A 133  GLU  N
   A 133  GLU  CA
   A 133  GLU  CB        110.50   118.91    -8.41  1.70e+00  2.45e+01   4.9*sigma
   A  51  ILE  CA
   A  51  ILE  C
   A  52  PRO  N         116.90   124.32    -7.42  1.50e+00  2.45e+01   4.9*sigma
   A  18  VAL  CA
   A  18  VAL  CB
   A  18  VAL  CG1       110.40   118.71    -8.31  1.70e+00  2.39e+01   4.9*sigma
   A 137  HIS  O
   A 137  HIS  C
   A 138  HIS  N         123.00   115.35     7.65  1.60e+00  2.29e+01   4.8*sigma
   A 135  HIS  CB
   A 135  HIS  CG
   A 135  HIS  ND1       122.70   115.60     7.10  1.50e+00  2.24e+01   4.7*sigma
   A  76  SER  C
   A  77  ILE  N
   A  77  ILE  CA        121.70   130.14    -8.44  1.80e+00  2.20e+01   4.7*sigma
   A  13  SER  C
   A  13  SER  CA
   A  13  SER  CB        110.10   101.28     8.82  1.90e+00  2.16e+01   4.6*sigma
   A 138  HIS  ND1
   A 138  HIS  CG
   A 138  HIS  CD2       106.10   110.68    -4.58  1.00e+00  2.10e+01   4.6*sigma
   A 139  HIS  CA
   A 139  HIS  CB
   A 139  HIS  CG        113.80   118.35    -4.55  1.00e+00  2.07e+01   4.6*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.60    -4.50  1.00e+00  2.02e+01   4.5*sigma
   A  97  SER  C
   A  98  SER  N
   A  98  SER  CA        121.70   129.66    -7.96  1.80e+00  1.95e+01   4.4*sigma
   A 136  HIS  CB
   A 136  HIS  CG
   A 136  HIS  ND1       122.70   116.13     6.57  1.50e+00  1.92e+01   4.4*sigma
   A 133  GLU  CA
   A 133  GLU  C
   A 134  HIS  N         116.20   124.87    -8.67  2.00e+00  1.88e+01   4.3*sigma
   A 138  HIS  C
   A 138  HIS  CA
   A 138  HIS  CB        110.10   101.92     8.18  1.90e+00  1.85e+01   4.3*sigma
   A  43  HIS  ND1
   A  43  HIS  CG
   A  43  HIS  CD2       106.10   110.38    -4.28  1.00e+00  1.83e+01   4.3*sigma
   A 135  HIS  N
   A 135  HIS  CA
   A 135  HIS  CB        110.50   117.77    -7.27  1.70e+00  1.83e+01   4.3*sigma
   A  76  SER  C
   A  76  SER  CA
   A  76  SER  CB        110.10   101.99     8.11  1.90e+00  1.82e+01   4.3*sigma
   A   1  MET  C
   A   1  MET  CA
   A   1  MET  CB        110.10   118.19    -8.09  1.90e+00  1.81e+01   4.3*sigma
   A 135  HIS  O
   A 135  HIS  C
   A 136  HIS  N         123.00   116.34     6.66  1.60e+00  1.73e+01   4.2*sigma
   A  50  TYR  C
   A  51  ILE  N
   A  51  ILE  CA        121.70   129.18    -7.48  1.80e+00  1.73e+01   4.2*sigma
   A 136  HIS  C
   A 136  HIS  CA
   A 136  HIS  CB        110.10   102.28     7.82  1.90e+00  1.69e+01   4.1*sigma
   A  43  HIS  CA
   A  43  HIS  CB
   A  43  HIS  CG        113.80   117.91    -4.11  1.00e+00  1.69e+01   4.1*sigma
   A 139  HIS  CB
   A 139  HIS  CG
   A 139  HIS  CD2       131.20   125.88     5.32  1.30e+00  1.68e+01   4.1*sigma
   A  61  LEU  CD1
   A  61  LEU  CG
   A  61  LEU  CD2       110.80   101.82     8.98  2.20e+00  1.66e+01   4.1*sigma
   A  77  ILE  N
   A  77  ILE  CA
   A  77  ILE  CB        111.50   104.59     6.91  1.70e+00  1.65e+01   4.1*sigma

  Min. delta:    0.001 (Z=  0.001)
  Max. delta:   17.457 (Z=  9.010)
  Mean delta:    2.703 (Z=  1.511)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 114  PRO  CA
   A 114  PRO  C
   A 115  ALA  N
   A 115  ALA  CA        180.00   149.81    30.19  5.00e+00  3.65e+01   6.0*sigma
   A 113  LYS  CA
   A 113  LYS  C
   A 114  PRO  N
   A 114  PRO  CA        180.00  -150.34   -29.66  5.00e+00  3.52e+01   5.9*sigma
   A 137  HIS  CA
   A 137  HIS  C
   A 138  HIS  N
   A 138  HIS  CA          0.00    29.12   -29.12  5.00e+00  3.39e+01   5.8*sigma
   A 133  GLU  CA
   A 133  GLU  C
   A 134  HIS  N
   A 134  HIS  CA          0.00    28.82   -28.82  5.00e+00  3.32e+01   5.8*sigma
   A 136  HIS  CA
   A 136  HIS  C
   A 137  HIS  N
   A 137  HIS  CA        180.00   156.59    23.41  5.00e+00  2.19e+01   4.7*sigma
   A 115  ALA  CA
   A 115  ALA  C
   A 116  ASP  N
   A 116  ASP  CA        180.00   156.89    23.11  5.00e+00  2.14e+01   4.6*sigma
   A  13  SER  CA
   A  13  SER  C
   A  14  VAL  N
   A  14  VAL  CA        180.00   157.72    22.28  5.00e+00  1.99e+01   4.5*sigma
   A 130  SER  CA
   A 130  SER  C
   A 131  ILE  N
   A 131  ILE  CA        180.00   159.90    20.10  5.00e+00  1.62e+01   4.0*sigma

  Min. delta:    0.021
  Max. delta:   78.300
  Mean delta:   11.589

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.591
  Mean delta:    0.131

                       ----------Planar groups----------                       

  atoms                 rms_deltas   delta_max    residual   deviation
   A 134  HIS  CB
   A 134  HIS  CG
   A 134  HIS  ND1
   A 134  HIS  CD2
   A 134  HIS  CE1
   A 134  HIS  NE2           0.115       0.156      199.03   7.8*sigma
   A 136  HIS  CB
   A 136  HIS  CG
   A 136  HIS  ND1
   A 136  HIS  CD2
   A 136  HIS  CE1
   A 136  HIS  NE2           0.090       0.121      122.80   6.1*sigma
   A 138  HIS  CB
   A 138  HIS  CG
   A 138  HIS  ND1
   A 138  HIS  CD2
   A 138  HIS  CE1
   A 138  HIS  NE2           0.084       0.114      106.82   5.7*sigma

  Min. delta:    0.000
  Max. delta:    0.115
  Mean delta:    0.021

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

                       ----------Angle outliers----------                      

   A 136  HIS  HA , Angle C-CA-HA, observed: 121.924, delta from target: -12.924
   A 114  PRO  HA , Angle C-CA-HA, observed: 94.318, delta from target: 14.682
   A 114  PRO  HA , Angle CB-CA-HA, observed: 125.575, delta from target: -16.575

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.012   0.062   2241  Z= 0.640
    Angle     :  2.322  17.457   4077  Z= 1.074
    Chirality :  0.131   0.591    176
    Planarity :  0.016   0.108    326
    Dihedral  : 10.474  78.300    768
    Min Nonbonded Distance : 1.627
  
  Molprobity Statistics.
    All-atom Clashscore : 8.57
    Ramachandran Plot:
      Outliers : 10.95 %
      Allowed  :  7.30 %
      Favored  : 81.75 %
    Rotamer:
      Outliers :  0.81 %
      Allowed  :  2.42 %
      Favored  : 96.77 %
    Cbeta Deviations :  6.06 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 2.29 %
      Twisted Proline : 0.00 %
      Twisted General : 0.76 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -1.20 (0.71), residues: 137
    helix:  1.21 (0.67), residues: 63
    sheet:  None (None), residues: 0
    loop : -2.80 (0.65), residues: 74
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.007   0.002   HIS A  43 
   PHE   0.117   0.024   PHE A  15 
   TYR   0.119   0.017   TYR A 105 
   ARG   0.065   0.012   ARG A  58 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.007   0.002   HIS A  43 
   PHE   0.044   0.015   PHE A  15 
   TYR   0.051   0.014   TYR A 105 
   ARG   0.018   0.004   ARG A  21 

                     ----------Asn/Gln/His flips----------                     

   A 134  HIS
   A 137  HIS

=================================== Summary ===================================

  Ramachandran outliers =  10.95 %
                favored =  81.75 %
  Rotamer outliers      =   0.81 %
  C-beta deviations     =     8
  Clashscore            =   8.57
  RMS(bonds)            =   0.0122
  RMS(angles)           =   2.32
  MolProbity score      =   2.17

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py

End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  atoms                 ideal   model   delta   sigma   slack  residual   deviation
   A 127  ARG  CD
   A 127  ARG  NE          1.46     1.52    -0.06  1.40e-02  1.72e+01   4.1*sigma

  Min. delta:    0.000 (Z=  0.001)
  Max. delta:    0.060 (Z=  4.141)
  Mean delta:    0.017 (Z=  0.931)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  51  ILE  CA
   A  51  ILE  C
   A  52  PRO  N         116.90   130.08   -13.18  1.50e+00  7.72e+01   8.8*sigma
   A 116  ASP  CA
   A 116  ASP  C
   A 117  PRO  N         116.90   128.81   -11.91  1.50e+00  6.30e+01   7.9*sigma
   A 101  LYS  CA
   A 101  LYS  C
   A 102  PRO  N         116.90   127.51   -10.61  1.50e+00  5.01e+01   7.1*sigma
   A  51  ILE  O
   A  51  ILE  C
   A  52  PRO  N         123.00   113.89     9.11  1.60e+00  3.24e+01   5.7*sigma
   A 133  GLU  N
   A 133  GLU  CA
   A 133  GLU  CB        110.50   119.16    -8.66  1.70e+00  2.59e+01   5.1*sigma
   A  53  LEU  CA
   A  53  LEU  C
   A  54  PRO  N         116.90   124.49    -7.59  1.50e+00  2.56e+01   5.1*sigma
   A 116  ASP  O
   A 116  ASP  C
   A 117  PRO  N         123.00   115.04     7.96  1.60e+00  2.47e+01   5.0*sigma
   A  21  ARG  CA
   A  21  ARG  C
   A  22  PRO  N         116.90   123.77    -6.87  1.50e+00  2.10e+01   4.6*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   110.66    -4.56  1.00e+00  2.08e+01   4.6*sigma
   A  52  PRO  N
   A  52  PRO  CD
   A  52  PRO  CG        103.20   109.84    -6.64  1.50e+00  1.96e+01   4.4*sigma
   A 139  HIS  CA
   A 139  HIS  CB
   A 139  HIS  CG        113.80   118.22    -4.42  1.00e+00  1.95e+01   4.4*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.50    -4.40  1.00e+00  1.93e+01   4.4*sigma
   A 127  ARG  NH1
   A 127  ARG  CZ
   A 127  ARG  NH2       119.30   113.59     5.71  1.30e+00  1.93e+01   4.4*sigma
   A 134  HIS  ND1
   A 134  HIS  CG
   A 134  HIS  CD2       106.10   110.48    -4.38  1.00e+00  1.92e+01   4.4*sigma
   A  22  PRO  CA
   A  22  PRO  C
   A  23  ASP  N         116.20   124.91    -8.71  2.00e+00  1.90e+01   4.4*sigma
   A 138  HIS  ND1
   A 138  HIS  CG
   A 138  HIS  CD2       106.10   110.34    -4.24  1.00e+00  1.79e+01   4.2*sigma
   A 113  LYS  CA
   A 113  LYS  C
   A 114  PRO  N         116.90   123.20    -6.30  1.50e+00  1.76e+01   4.2*sigma
   A 136  HIS  ND1
   A 136  HIS  CG
   A 136  HIS  CD2       106.10   110.29    -4.19  1.00e+00  1.75e+01   4.2*sigma
   A   5  THR  CA
   A   5  THR  C
   A   6  PRO  N         116.90   123.14    -6.24  1.50e+00  1.73e+01   4.2*sigma
   A 138  HIS  C
   A 139  HIS  N
   A 139  HIS  CA        121.70   129.05    -7.35  1.80e+00  1.67e+01   4.1*sigma
   A 118  ASP  C
   A 118  ASP  CA
   A 118  ASP  CB        110.10   117.81    -7.71  1.90e+00  1.65e+01   4.1*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.11    -4.01  1.00e+00  1.61e+01   4.0*sigma

  Min. delta:    0.002 (Z=  0.001)
  Max. delta:   13.177 (Z=  8.785)
  Mean delta:    2.311 (Z=  1.315)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 117  PRO  CA
   A 117  PRO  C
   A 118  ASP  N
   A 118  ASP  CA        180.00   139.31    40.69  5.00e+00  6.62e+01   8.1*sigma
   A 133  GLU  CA
   A 133  GLU  C
   A 134  HIS  N
   A 134  HIS  CA        180.00   145.47    34.53  5.00e+00  4.77e+01   6.9*sigma
   A 132  LEU  CA
   A 132  LEU  C
   A 133  GLU  N
   A 133  GLU  CA        180.00   145.69    34.31  5.00e+00  4.71e+01   6.9*sigma
   A 118  ASP  CA
   A 118  ASP  C
   A 119  LEU  N
   A 119  LEU  CA        180.00   146.76    33.24  5.00e+00  4.42e+01   6.6*sigma
   A 137  HIS  CA
   A 137  HIS  C
   A 138  HIS  N
   A 138  HIS  CA        180.00   156.97    23.03  5.00e+00  2.12e+01   4.6*sigma
   A  84  GLU  CA
   A  84  GLU  C
   A  85  LYS  N
   A  85  LYS  CA        180.00   157.98    22.02  5.00e+00  1.94e+01   4.4*sigma
   A 135  HIS  CA
   A 135  HIS  C
   A 136  HIS  N
   A 136  HIS  CA        180.00   158.97    21.03  5.00e+00  1.77e+01   4.2*sigma
   A 114  PRO  CA
   A 114  PRO  C
   A 115  ALA  N
   A 115  ALA  CA        180.00   159.30    20.70  5.00e+00  1.71e+01   4.1*sigma

  Min. delta:    0.025
  Max. delta:   60.534
  Mean delta:   10.388

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.782
  Mean delta:    0.123

                       ----------Planar groups----------                       

  atoms                 rms_deltas   delta_max    residual   deviation
   A 111  TYR  CB
   A 111  TYR  CG
   A 111  TYR  CD1
   A 111  TYR  CD2
   A 111  TYR  CE1
   A 111  TYR  CE2
   A 111  TYR  CZ
   A 111  TYR  OH            0.060       0.106       71.57   5.3*sigma

  Min. delta:    0.000
  Max. delta:    0.062
  Mean delta:    0.014

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

                       ----------Angle outliers----------                      

   A 116  ASP  HA , Angle N-CA-HA, observed: 97.730, delta from target: 12.270
   A 118  ASP  HA , Angle C-CA-HA, observed: 96.691, delta from target: 12.309

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.012   0.060   2241  Z= 0.663
    Angle     :  2.036  13.177   4077  Z= 0.943
    Chirality :  0.123   0.782    176
    Planarity :  0.011   0.062    326
    Dihedral  :  9.873  60.534    768
    Min Nonbonded Distance : 1.649
  
  Molprobity Statistics.
    All-atom Clashscore : 1.80
    Ramachandran Plot:
      Outliers :  5.11 %
      Allowed  :  6.57 %
      Favored  : 88.32 %
    Rotamer:
      Outliers :  0.00 %
      Allowed  :  0.81 %
      Favored  : 99.19 %
    Cbeta Deviations :  3.03 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.00 %
      Twisted Proline : 0.00 %
      Twisted General : 3.05 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -0.88 (0.67), residues: 137
    helix:  1.36 (0.58), residues: 68
    sheet:  None (None), residues: 0
    loop : -2.79 (0.65), residues: 69
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.004   0.001   HIS A 139 
   PHE   0.058   0.012   PHE A  15 
   TYR   0.142   0.022   TYR A 111 
   ARG   0.031   0.009   ARG A  58 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.004   0.001   HIS A 139 
   PHE   0.038   0.013   PHE A  15 
   TYR   0.106   0.022   TYR A 111 
   ARG   0.010   0.003   ARG A  21 

                     ----------Asn/Gln/His flips----------                     

   A 137  HIS

=================================== Summary ===================================

Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  

  Ramachandran outliers =  10.95 %
                favored =  81.75 %
  Rotamer outliers      =   0.81 %
  C-beta deviations     =     8
  Clashscore            =   8.57
  RMS(bonds)            =   0.0122
  RMS(angles)           =   2.32
  MolProbity score      =   2.17

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py

End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000 (Z=  0.000)
  Max. delta:    0.049 (Z=  3.711)
  Mean delta:    0.017 (Z=  0.913)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 101  LYS  CA
   A 101  LYS  C
   A 102  PRO  N         116.90   127.26   -10.36  1.50e+00  4.77e+01   6.9*sigma
   A  98  SER  C
   A  98  SER  CA
   A  98  SER  CB        110.10    97.64    12.46  1.90e+00  4.30e+01   6.6*sigma
   A 113  LYS  CA
   A 113  LYS  C
   A 114  PRO  N         116.90   125.62    -8.72  1.50e+00  3.38e+01   5.8*sigma
   A  76  SER  N
   A  76  SER  CA
   A  76  SER  CB        110.50   119.64    -9.14  1.70e+00  2.89e+01   5.4*sigma
   A  98  SER  N
   A  98  SER  CA
   A  98  SER  C         111.00   125.57   -14.57  2.80e+00  2.71e+01   5.2*sigma
   A  97  SER  N
   A  97  SER  CA
   A  97  SER  CB        110.50   119.26    -8.76  1.70e+00  2.66e+01   5.2*sigma
   A 119  LEU  C
   A 120  GLU  N
   A 120  GLU  CA        121.70   130.53    -8.83  1.80e+00  2.41e+01   4.9*sigma
   A  86  ILE  C
   A  87  GLY  N
   A  87  GLY  CA        121.70   130.51    -8.81  1.80e+00  2.40e+01   4.9*sigma
   A  99  LEU  N
   A  99  LEU  CA
   A  99  LEU  C         111.00   124.09   -13.09  2.80e+00  2.18e+01   4.7*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.51    -4.41  1.00e+00  1.95e+01   4.4*sigma
   A 136  HIS  ND1
   A 136  HIS  CG
   A 136  HIS  CD2       106.10   110.50    -4.40  1.00e+00  1.94e+01   4.4*sigma
   A  43  HIS  ND1
   A  43  HIS  CG
   A  43  HIS  CD2       106.10   110.48    -4.38  1.00e+00  1.92e+01   4.4*sigma
   A 134  HIS  ND1
   A 134  HIS  CG
   A 134  HIS  CD2       106.10   110.42    -4.32  1.00e+00  1.86e+01   4.3*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.30    -4.20  1.00e+00  1.76e+01   4.2*sigma
   A  96  GLY  C
   A  97  SER  N
   A  97  SER  CA        121.70   129.25    -7.55  1.80e+00  1.76e+01   4.2*sigma
   A  43  HIS  C
   A  43  HIS  CA
   A  43  HIS  CB        110.10   102.13     7.97  1.90e+00  1.76e+01   4.2*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   110.26    -4.16  1.00e+00  1.73e+01   4.2*sigma
   A 101  LYS  O
   A 101  LYS  C
   A 102  PRO  N         123.00   116.36     6.64  1.60e+00  1.72e+01   4.1*sigma
   A  75  GLU  C
   A  76  SER  N
   A  76  SER  CA        121.70   129.15    -7.45  1.80e+00  1.71e+01   4.1*sigma
   A  53  LEU  CA
   A  53  LEU  C
   A  54  PRO  N         116.90   123.07    -6.17  1.50e+00  1.69e+01   4.1*sigma
   A 139  HIS  ND1
   A 139  HIS  CE1
   A 139  HIS  NE2       108.40   112.48    -4.08  1.00e+00  1.66e+01   4.1*sigma
   A   2  LEU  N
   A   2  LEU  CA
   A   2  LEU  CB        110.50   103.70     6.80  1.70e+00  1.60e+01   4.0*sigma

  Min. delta:    0.002 (Z=  0.001)
  Max. delta:   14.571 (Z=  6.909)
  Mean delta:    2.359 (Z=  1.293)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  89  TYR  CA
   A  89  TYR  C
   A  90  SER  N
   A  90  SER  CA        180.00   145.70    34.30  5.00e+00  4.71e+01   6.9*sigma
   A 120  GLU  CA
   A 120  GLU  C
   A 121  GLY  N
   A 121  GLY  CA        180.00   154.50    25.50  5.00e+00  2.60e+01   5.1*sigma
   A 121  GLY  CA
   A 121  GLY  C
   A 122  ILE  N
   A 122  ILE  CA        180.00  -159.25   -20.75  5.00e+00  1.72e+01   4.1*sigma
   A  91  TYR  CA
   A  91  TYR  C
   A  92  THR  N
   A  92  THR  CA        180.00   159.65    20.35  5.00e+00  1.66e+01   4.1*sigma
   A 118  ASP  CA
   A 118  ASP  C
   A 119  LEU  N
   A 119  LEU  CA        180.00  -159.90   -20.10  5.00e+00  1.62e+01   4.0*sigma

  Min. delta:    0.045
  Max. delta:   71.126
  Mean delta:   11.590

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.554
  Mean delta:    0.121

                       ----------Planar groups----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.070
  Mean delta:    0.014

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

                       ----------Angle outliers----------                      

   A  97  SER  HA , Angle N-CA-HA, observed: 96.891, delta from target: 13.109
   A  98  SER  HA , Angle CB-CA-HA, observed: 122.594, delta from target: -13.594
   A  99  LEU  HA , Angle N-CA-HA, observed: 92.304, delta from target: 17.696
   A  98  SER  HA , Angle N-CA-HA, observed: 92.154, delta from target: 17.846

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.012   0.049   2241  Z= 0.650
    Angle     :  2.119  17.846   4077  Z= 0.947
    Chirality :  0.121   0.554    176
    Planarity :  0.011   0.070    326
    Dihedral  : 10.312  71.126    768
    Min Nonbonded Distance : 1.726
  
  Molprobity Statistics.
    All-atom Clashscore : 3.61
    Ramachandran Plot:
      Outliers :  6.57 %
      Allowed  : 22.63 %
      Favored  : 70.80 %
    Rotamer:
      Outliers :  0.81 %
      Allowed  :  3.23 %
      Favored  : 95.97 %
    Cbeta Deviations :  3.03 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.00 %
      Twisted Proline : 0.00 %
      Twisted General : 0.76 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -2.99 (0.71), residues: 137
    helix:  1.28 (0.65), residues: 54
    sheet:  None (None), residues: 0
    loop : -4.67 (0.59), residues: 83
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.005   0.001   HIS A 139 
   PHE   0.112   0.028   PHE A  45 
   TYR   0.130   0.023   TYR A 111 
   ARG   0.031   0.008   ARG A  58 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.005   0.001   HIS A 139 
   PHE   0.040   0.017   PHE A  45 
   TYR   0.095   0.022   TYR A 111 
   ARG   0.011   0.003   ARG A  21 

                     ----------Asn/Gln/His flips----------                     

  No backwards Asn/Gln/His sidechains found.

=================================== Summary ===================================


End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000 (Z=  0.001)
  Max. delta:    0.076 (Z=  3.998)
  Mean delta:    0.017 (Z=  0.914)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  79  LYS  CB
   A  79  LYS  CG
   A  79  LYS  CD        111.30   129.85   -18.55  2.30e+00  6.51e+01   8.1*sigma
   A 116  ASP  CA
   A 116  ASP  C
   A 117  PRO  N         116.90   128.10   -11.20  1.50e+00  5.58e+01   7.5*sigma
   A  15  PHE  CA
   A  15  PHE  CB
   A  15  PHE  CG        113.80   107.95     5.85  1.00e+00  3.42e+01   5.8*sigma
   A  29  ASP  CA
   A  29  ASP  CB
   A  29  ASP  CG        112.60   118.25    -5.65  1.00e+00  3.19e+01   5.6*sigma
   A  51  ILE  CA
   A  51  ILE  C
   A  52  PRO  N         116.90   124.29    -7.39  1.50e+00  2.43e+01   4.9*sigma
   A 103  ASP  CA
   A 103  ASP  CB
   A 103  ASP  CG        112.60   117.46    -4.86  1.00e+00  2.37e+01   4.9*sigma
   A  95  ASP  CA
   A  95  ASP  CB
   A  95  ASP  CG        112.60   117.44    -4.84  1.00e+00  2.34e+01   4.8*sigma
   A  94  GLY  C
   A  95  ASP  N
   A  95  ASP  CA        121.70   130.33    -8.63  1.80e+00  2.30e+01   4.8*sigma
   A 113  LYS  CA
   A 113  LYS  C
   A 114  PRO  N         116.90   123.79    -6.89  1.50e+00  2.11e+01   4.6*sigma
   A 116  ASP  O
   A 116  ASP  C
   A 117  PRO  N         123.00   115.67     7.33  1.60e+00  2.10e+01   4.6*sigma
   A  43  HIS  ND1
   A  43  HIS  CG
   A  43  HIS  CD2       106.10   110.63    -4.53  1.00e+00  2.06e+01   4.5*sigma
   A  57  VAL  CA
   A  57  VAL  CB
   A  57  VAL  CG2       110.40   118.04    -7.64  1.70e+00  2.02e+01   4.5*sigma
   A 138  HIS  ND1
   A 138  HIS  CG
   A 138  HIS  CD2       106.10   110.50    -4.40  1.00e+00  1.93e+01   4.4*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.47    -4.37  1.00e+00  1.91e+01   4.4*sigma
   A 134  HIS  ND1
   A 134  HIS  CG
   A 134  HIS  CD2       106.10   110.42    -4.32  1.00e+00  1.86e+01   4.3*sigma
   A  56  THR  CA
   A  56  THR  CB
   A  56  THR  CG2       110.50   117.75    -7.25  1.70e+00  1.82e+01   4.3*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   110.33    -4.23  1.00e+00  1.79e+01   4.2*sigma
   A 136  HIS  ND1
   A 136  HIS  CG
   A 136  HIS  CD2       106.10   110.12    -4.02  1.00e+00  1.62e+01   4.0*sigma

  Min. delta:    0.002 (Z=  0.001)
  Max. delta:   18.553 (Z=  8.067)
  Mean delta:    2.308 (Z=  1.303)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 138  HIS  CA
   A 138  HIS  C
   A 139  HIS  N
   A 139  HIS  CA        180.00   141.10    38.90  5.00e+00  6.05e+01   7.8*sigma
   A  95  ASP  CA
   A  95  ASP  C
   A  96  GLY  N
   A  96  GLY  CA        180.00   145.24    34.76  5.00e+00  4.83e+01   7.0*sigma
   A 122  ILE  CA
   A 122  ILE  C
   A 123  GLU  N
   A 123  GLU  CA        180.00   150.91    29.09  5.00e+00  3.38e+01   5.8*sigma

  Min. delta:    0.032
  Max. delta:   67.634
  Mean delta:   10.487

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.001
  Max. delta:    0.361
  Mean delta:    0.101

                       ----------Planar groups----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.065
  Mean delta:    0.011

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.012   0.076   2241  Z= 0.651
    Angle     :  2.022  18.553   4077  Z= 0.933
    Chirality :  0.101   0.361    176
    Planarity :  0.009   0.051    326
    Dihedral  :  9.274  67.634    768
    Min Nonbonded Distance : 1.671
  
  Molprobity Statistics.
    All-atom Clashscore : 4.06
    Ramachandran Plot:
      Outliers :  2.92 %
      Allowed  : 11.68 %
      Favored  : 85.40 %
    Rotamer:
      Outliers :  0.00 %
      Allowed  :  1.61 %
      Favored  : 98.39 %
    Cbeta Deviations :  1.52 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.00 %
      Twisted Proline : 0.00 %
      Twisted General : 1.53 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -0.55 (0.72), residues: 137
    helix:  0.29 (0.63), residues: 65
    sheet:  None (None), residues: 0
    loop : -0.95 (0.77), residues: 72
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.004   0.002   HIS A  43 
   PHE   0.089   0.024   PHE A  67 
   TYR   0.095   0.021   TYR A  12 
   ARG   0.049   0.012   ARG A 127 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.004   0.002   HIS A  43 
   PHE   0.043   0.015   PHE A  67 
   TYR   0.068   0.016   TYR A  12 
   ARG   0.016   0.005   ARG A  21 

                     ----------Asn/Gln/His flips----------                     

  No backwards Asn/Gln/His sidechains found.

=================================== Summary ===================================

Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  

  Ramachandran outliers =   5.11 %
                favored =  88.32 %
  Rotamer outliers      =   0.00 %
  C-beta deviations     =     4
  Clashscore            =   1.80
  RMS(bonds)            =   0.0124
  RMS(angles)           =   2.04
  MolProbity score      =   1.53

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py

End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000 (Z=  0.002)
  Max. delta:    0.066 (Z=  3.881)
  Mean delta:    0.016 (Z=  0.877)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 117  PRO  CA
   A 117  PRO  C
   A 118  ASP  N         116.20   135.74   -19.54  2.00e+00  9.54e+01   9.8*sigma
   A 117  PRO  N
   A 117  PRO  CA
   A 117  PRO  C         112.10   134.85   -22.75  2.50e+00  8.28e+01   9.1*sigma
   A 130  SER  N
   A 130  SER  CA
   A 130  SER  CB        110.50   123.17   -12.67  1.70e+00  5.56e+01   7.5*sigma
   A 135  HIS  CA
   A 135  HIS  CB
   A 135  HIS  CG        113.80   121.05    -7.25  1.00e+00  5.26e+01   7.3*sigma
   A 129  ARG  C
   A 130  SER  N
   A 130  SER  CA        121.70   134.56   -12.86  1.80e+00  5.10e+01   7.1*sigma
   A 116  ASP  N
   A 116  ASP  CA
   A 116  ASP  CB        110.50    98.36    12.14  1.70e+00  5.10e+01   7.1*sigma
   A 116  ASP  C
   A 116  ASP  CA
   A 116  ASP  CB        110.10   122.45   -12.35  1.90e+00  4.23e+01   6.5*sigma
   A 113  LYS  CA
   A 113  LYS  C
   A 114  PRO  N         116.90   126.58    -9.68  1.50e+00  4.17e+01   6.5*sigma
   A 134  HIS  C
   A 135  HIS  N
   A 135  HIS  CA        121.70   133.29   -11.59  1.80e+00  4.15e+01   6.4*sigma
   A 116  ASP  CA
   A 116  ASP  CB
   A 116  ASP  CG        112.60   119.01    -6.41  1.00e+00  4.10e+01   6.4*sigma
   A 116  ASP  CA
   A 116  ASP  C
   A 117  PRO  N         116.90   108.02     8.88  1.50e+00  3.50e+01   5.9*sigma
   A 117  PRO  O
   A 117  PRO  C
   A 118  ASP  N         123.00   113.89     9.11  1.60e+00  3.24e+01   5.7*sigma
   A 135  HIS  N
   A 135  HIS  CA
   A 135  HIS  CB        110.50   119.93    -9.43  1.70e+00  3.08e+01   5.5*sigma
   A 138  HIS  C
   A 139  HIS  N
   A 139  HIS  CA        121.70   131.59    -9.89  1.80e+00  3.02e+01   5.5*sigma
   A 134  HIS  O
   A 134  HIS  C
   A 135  HIS  N         123.00   114.44     8.56  1.60e+00  2.86e+01   5.3*sigma
   A 133  GLU  CA
   A 133  GLU  CB
   A 133  GLU  CG        114.10   124.04    -9.94  2.00e+00  2.47e+01   5.0*sigma
   A 137  HIS  N
   A 137  HIS  CA
   A 137  HIS  C         111.00   124.63   -13.63  2.80e+00  2.37e+01   4.9*sigma
   A  51  ILE  CA
   A  51  ILE  C
   A  52  PRO  N         116.90   123.58    -6.68  1.50e+00  1.98e+01   4.5*sigma
   A 136  HIS  ND1
   A 136  HIS  CG
   A 136  HIS  CD2       106.10   110.54    -4.44  1.00e+00  1.98e+01   4.4*sigma
   A 131  ILE  CA
   A 131  ILE  CB
   A 131  ILE  CG2       110.50   118.02    -7.52  1.70e+00  1.96e+01   4.4*sigma
   A 129  ARG  O
   A 129  ARG  C
   A 130  SER  N         123.00   116.12     6.88  1.60e+00  1.85e+01   4.3*sigma
   A 116  ASP  CA
   A 116  ASP  C
   A 116  ASP  O         120.80   127.99    -7.19  1.70e+00  1.79e+01   4.2*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.32    -4.22  1.00e+00  1.78e+01   4.2*sigma
   A  43  HIS  ND1
   A  43  HIS  CG
   A  43  HIS  CD2       106.10   110.23    -4.13  1.00e+00  1.71e+01   4.1*sigma
   A 136  HIS  N
   A 136  HIS  CA
   A 136  HIS  CB        110.50   117.32    -6.82  1.70e+00  1.61e+01   4.0*sigma

  Min. delta:    0.000 (Z=  0.000)
  Max. delta:   22.751 (Z=  9.770)
  Mean delta:    2.579 (Z=  1.390)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 116  ASP  CA
   A 116  ASP  C
   A 117  PRO  N
   A 117  PRO  CA        180.00  -106.77   -73.23  5.00e+00  2.15e+02  14.6*sigma
   A 132  LEU  CA
   A 132  LEU  C
   A 133  GLU  N
   A 133  GLU  CA        180.00   113.57    66.43  5.00e+00  1.77e+02  13.3*sigma
   A 136  HIS  CA
   A 136  HIS  C
   A 137  HIS  N
   A 137  HIS  CA        180.00   118.99    61.01  5.00e+00  1.49e+02  12.2*sigma
   A 131  ILE  CA
   A 131  ILE  C
   A 132  LEU  N
   A 132  LEU  CA        180.00   124.11    55.89  5.00e+00  1.25e+02  11.2*sigma
   A 115  ALA  CA
   A 115  ALA  C
   A 116  ASP  N
   A 116  ASP  CA        180.00   131.64    48.36  5.00e+00  9.35e+01   9.7*sigma
   A 130  SER  CA
   A 130  SER  C
   A 131  ILE  N
   A 131  ILE  CA        180.00   141.54    38.46  5.00e+00  5.92e+01   7.7*sigma
   A 134  HIS  CA
   A 134  HIS  C
   A 135  HIS  N
   A 135  HIS  CA          0.00    35.06   -35.06  5.00e+00  4.92e+01   7.0*sigma
   A  87  GLY  CA
   A  87  GLY  C
   A  88  ASP  N
   A  88  ASP  CA        180.00   145.00    35.00  5.00e+00  4.90e+01   7.0*sigma
   A  92  THR  CA
   A  92  THR  C
   A  93  LEU  N
   A  93  LEU  CA        180.00   153.13    26.87  5.00e+00  2.89e+01   5.4*sigma
   A 114  PRO  CA
   A 114  PRO  C
   A 115  ALA  N
   A 115  ALA  CA        180.00   154.27    25.73  5.00e+00  2.65e+01   5.1*sigma
   A  97  SER  CA
   A  97  SER  C
   A  98  SER  N
   A  98  SER  CA        180.00   156.56    23.44  5.00e+00  2.20e+01   4.7*sigma
   A 137  HIS  CA
   A 137  HIS  C
   A 138  HIS  N
   A 138  HIS  CA        180.00   157.62    22.38  5.00e+00  2.00e+01   4.5*sigma
   A 133  GLU  CA
   A 133  GLU  C
   A 134  HIS  N
   A 134  HIS  CA        180.00   158.85    21.15  5.00e+00  1.79e+01   4.2*sigma
   A 135  HIS  CA
   A 135  HIS  C
   A 136  HIS  N
   A 136  HIS  CA        180.00   159.87    20.13  5.00e+00  1.62e+01   4.0*sigma

  Min. delta:    0.095
  Max. delta:   73.231
  Mean delta:   14.034

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.619
  Mean delta:    0.135

                       ----------Planar groups----------                       

  atoms                 rms_deltas   delta_max    residual   deviation
   A 135  HIS  CB
   A 135  HIS  CG
   A 135  HIS  ND1
   A 135  HIS  CD2
   A 135  HIS  CE1
   A 135  HIS  NE2           0.079       0.116       93.37   5.8*sigma

  Min. delta:    0.000
  Max. delta:    0.150
  Mean delta:    0.020

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

                       ----------Angle outliers----------                      

   A  98  SER  HA , Angle N-CA-HA, observed: 97.054, delta from target: 12.946
   A 131  ILE  HA , Angle C-CA-HA, observed: 95.863, delta from target: 13.137
   A 117  PRO  HA , Angle N-CA-HA, observed: 96.491, delta from target: 13.509
   A 117  PRO  HA , Angle C-CA-HA, observed: 95.032, delta from target: 13.968
   A 116  ASP  HA , Angle C-CA-HA, observed: 92.004, delta from target: 16.996
   A 117  PRO  HA , Angle CB-CA-HA, observed: 132.152, delta from target: -23.152

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.012   0.066   2241  Z= 0.624
    Angle     :  2.290  23.152   4077  Z= 1.016
    Chirality :  0.135   0.619    176
    Planarity :  0.015   0.150    326
    Dihedral  : 11.616  73.231    768
    Min Nonbonded Distance : 1.717
  
  Molprobity Statistics.
    All-atom Clashscore : 5.86
    Ramachandran Plot:
      Outliers :  9.49 %
      Allowed  :  9.49 %
      Favored  : 81.02 %
    Rotamer:
      Outliers :  0.81 %
      Allowed  :  3.23 %
      Favored  : 95.97 %
    Cbeta Deviations :  6.06 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 1.53 %
      Twisted Proline : 14.29 %
      Twisted General : 5.34 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -0.95 (0.74), residues: 137
    helix:  1.90 (0.63), residues: 59
    sheet:  None (None), residues: 0
    loop : -2.90 (0.71), residues: 78
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.004   0.002   HIS A  43 
   PHE   0.056   0.013   PHE A  15 
   TYR   0.200   0.024   TYR A 105 
   ARG   0.066   0.013   ARG A  21 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.004   0.002   HIS A  43 
   PHE   0.023   0.011   PHE A  45 
   TYR   0.162   0.027   TYR A 105 
   ARG   0.010   0.002   ARG A  21 

                     ----------Asn/Gln/His flips----------                     

  No backwards Asn/Gln/His sidechains found.

=================================== Summary ===================================

  Ramachandran outliers =   6.57 %
                favored =  70.80 %
  Rotamer outliers      =   0.81 %
  C-beta deviations     =     4
  Clashscore            =   3.61
  RMS(bonds)            =   0.0120
  RMS(angles)           =   2.12
  MolProbity score      =   1.99

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py
  Ramachandran outliers =   2.92 %
                favored =  85.40 %
  Rotamer outliers      =   0.00 %
  C-beta deviations     =     2
  Clashscore            =   4.06
  RMS(bonds)            =   0.0122
  RMS(angles)           =   2.02
  MolProbity score      =   1.84

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py

End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000 (Z=  0.000)
  Max. delta:    0.050 (Z=  3.345)
  Mean delta:    0.016 (Z=  0.856)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  36  ASP  CA
   A  36  ASP  CB
   A  36  ASP  CG        112.60   106.56     6.04  1.00e+00  3.65e+01   6.0*sigma
   A  87  GLY  C
   A  88  ASP  N
   A  88  ASP  CA        121.70   131.15    -9.45  1.80e+00  2.76e+01   5.3*sigma
   A  53  LEU  CA
   A  53  LEU  C
   A  54  PRO  N         116.90   124.60    -7.70  1.50e+00  2.63e+01   5.1*sigma
   A  47  ASP  CA
   A  47  ASP  CB
   A  47  ASP  CG        112.60   107.53     5.07  1.00e+00  2.57e+01   5.1*sigma
   A  61  LEU  CD1
   A  61  LEU  CG
   A  61  LEU  CD2       110.80   100.11    10.69  2.20e+00  2.36e+01   4.9*sigma
   A  43  HIS  ND1
   A  43  HIS  CG
   A  43  HIS  CD2       106.10   110.75    -4.65  1.00e+00  2.16e+01   4.6*sigma
   A  51  ILE  CA
   A  51  ILE  C
   A  52  PRO  N         116.90   123.82    -6.92  1.50e+00  2.13e+01   4.6*sigma
   A  42  GLY  C
   A  43  HIS  N
   A  43  HIS  CA        121.70   129.93    -8.23  1.80e+00  2.09e+01   4.6*sigma
   A  88  ASP  C
   A  89  TYR  N
   A  89  TYR  CA        121.70   129.85    -8.15  1.80e+00  2.05e+01   4.5*sigma
   A 134  HIS  ND1
   A 134  HIS  CG
   A 134  HIS  CD2       106.10   110.56    -4.46  1.00e+00  1.99e+01   4.5*sigma
   A 136  HIS  ND1
   A 136  HIS  CG
   A 136  HIS  CD2       106.10   110.52    -4.42  1.00e+00  1.95e+01   4.4*sigma
   A 100  GLN  CB
   A 100  GLN  CG
   A 100  GLN  CD        112.60   105.09     7.51  1.70e+00  1.95e+01   4.4*sigma
   A 113  LYS  CA
   A 113  LYS  C
   A 114  PRO  N         116.90   123.51    -6.61  1.50e+00  1.94e+01   4.4*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.38    -4.28  1.00e+00  1.83e+01   4.3*sigma
   A 101  LYS  CA
   A 101  LYS  C
   A 102  PRO  N         116.90   123.31    -6.41  1.50e+00  1.83e+01   4.3*sigma
   A  98  SER  N
   A  98  SER  CA
   A  98  SER  CB        110.50   117.54    -7.04  1.70e+00  1.71e+01   4.1*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.22    -4.12  1.00e+00  1.70e+01   4.1*sigma
   A 138  HIS  ND1
   A 138  HIS  CG
   A 138  HIS  CD2       106.10   110.21    -4.11  1.00e+00  1.69e+01   4.1*sigma
   A  52  PRO  N
   A  52  PRO  CD
   A  52  PRO  CG        103.20   109.35    -6.15  1.50e+00  1.68e+01   4.1*sigma
   A  14  VAL  C
   A  14  VAL  CA
   A  14  VAL  CB        111.40   119.14    -7.74  1.90e+00  1.66e+01   4.1*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   110.13    -4.03  1.00e+00  1.62e+01   4.0*sigma

  Min. delta:    0.000 (Z=  0.000)
  Max. delta:   10.687 (Z=  6.038)
  Mean delta:    2.300 (Z=  1.287)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  85  LYS  CA
   A  85  LYS  C
   A  86  ILE  N
   A  86  ILE  CA        180.00   158.63    21.37  5.00e+00  1.83e+01   4.3*sigma
   A 138  HIS  CA
   A 138  HIS  C
   A 139  HIS  N
   A 139  HIS  CA        180.00   159.89    20.11  5.00e+00  1.62e+01   4.0*sigma

  Min. delta:    0.015
  Max. delta:   74.379
  Mean delta:   11.241

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.002
  Max. delta:    0.636
  Mean delta:    0.115

                       ----------Planar groups----------                       

  atoms                 rms_deltas   delta_max    residual   deviation
   A  81  TYR  CB
   A  81  TYR  CG
   A  81  TYR  CD1
   A  81  TYR  CD2
   A  81  TYR  CE1
   A  81  TYR  CE2
   A  81  TYR  CZ
   A  81  TYR  OH            0.087       0.136      152.12   6.8*sigma
   A  68  TYR  CB
   A  68  TYR  CG
   A  68  TYR  CD1
   A  68  TYR  CD2
   A  68  TYR  CE1
   A  68  TYR  CE2
   A  68  TYR  CZ
   A  68  TYR  OH            0.104       0.103      216.78   5.1*sigma

  Min. delta:    0.000
  Max. delta:    0.104
  Mean delta:    0.016

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

                       ----------Angle outliers----------                      

   A  14  VAL  HA , Angle CB-CA-HA, observed: 96.671, delta from target: 12.329

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.011   0.050   2241  Z= 0.610
    Angle     :  2.049  12.329   4077  Z= 0.933
    Chirality :  0.115   0.636    176
    Planarity :  0.014   0.147    326
    Dihedral  : 10.121  74.379    768
    Min Nonbonded Distance : 1.727
  
  Molprobity Statistics.
    All-atom Clashscore : 4.96
    Ramachandran Plot:
      Outliers :  3.65 %
      Allowed  :  7.30 %
      Favored  : 89.05 %
    Rotamer:
      Outliers :  1.61 %
      Allowed  :  0.81 %
      Favored  : 97.58 %
    Cbeta Deviations :  2.27 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.00 %
      Twisted Proline : 0.00 %
      Twisted General : 0.00 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -1.26 (0.72), residues: 137
    helix:  0.66 (0.61), residues: 64
    sheet:  None (None), residues: 0
    loop : -2.36 (0.75), residues: 73
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.005   0.001   HIS A 139 
   PHE   0.126   0.022   PHE A  15 
   TYR   0.276   0.038   TYR A  81 
   ARG   0.023   0.005   ARG A  21 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.005   0.001   HIS A 139 
   PHE   0.067   0.018   PHE A  15 
   TYR   0.174   0.030   TYR A  68 
   ARG   0.003   0.001   ARG A  21 

                     ----------Asn/Gln/His flips----------                     

   A 100  GLN

=================================== Summary ===================================


End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000 (Z=  0.000)
  Max. delta:    0.071 (Z=  3.643)
  Mean delta:    0.015 (Z=  0.805)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 116  ASP  CA
   A 116  ASP  C
   A 117  PRO  N         116.90   125.76    -8.86  1.50e+00  3.49e+01   5.9*sigma
   A 116  ASP  CA
   A 116  ASP  CB
   A 116  ASP  CG        112.60   117.33    -4.73  1.00e+00  2.24e+01   4.7*sigma
   A  77  ILE  C
   A  78  ILE  N
   A  78  ILE  CA        121.70   130.05    -8.35  1.80e+00  2.15e+01   4.6*sigma
   A  21  ARG  CA
   A  21  ARG  C
   A  22  PRO  N         116.90   123.66    -6.76  1.50e+00  2.03e+01   4.5*sigma
   A 138  HIS  ND1
   A 138  HIS  CG
   A 138  HIS  CD2       106.10   110.54    -4.44  1.00e+00  1.97e+01   4.4*sigma
   A 116  ASP  O
   A 116  ASP  C
   A 117  PRO  N         123.00   115.93     7.07  1.60e+00  1.95e+01   4.4*sigma
   A 101  LYS  CA
   A 101  LYS  C
   A 102  PRO  N         116.90   123.51    -6.61  1.50e+00  1.94e+01   4.4*sigma
   A  34  THR  CA
   A  34  THR  CB
   A  34  THR  CG2       110.50   117.97    -7.47  1.70e+00  1.93e+01   4.4*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.45    -4.35  1.00e+00  1.89e+01   4.3*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   110.37    -4.27  1.00e+00  1.82e+01   4.3*sigma
   A  78  ILE  CA
   A  78  ILE  CB
   A  78  ILE  CG2       110.50   117.70    -7.20  1.70e+00  1.80e+01   4.2*sigma
   A 136  HIS  ND1
   A 136  HIS  CG
   A 136  HIS  CD2       106.10   110.32    -4.22  1.00e+00  1.78e+01   4.2*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.20    -4.10  1.00e+00  1.68e+01   4.1*sigma
   A 113  LYS  CA
   A 113  LYS  C
   A 114  PRO  N         116.90   123.03    -6.13  1.50e+00  1.67e+01   4.1*sigma

  Min. delta:    0.002 (Z=  0.001)
  Max. delta:    8.860 (Z=  5.907)
  Mean delta:    2.176 (Z=  1.222)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 122  ILE  CA
   A 122  ILE  C
   A 123  GLU  N
   A 123  GLU  CA        180.00   154.06    25.94  5.00e+00  2.69e+01   5.2*sigma
   A 121  GLY  CA
   A 121  GLY  C
   A 122  ILE  N
   A 122  ILE  CA        180.00   158.13    21.87  5.00e+00  1.91e+01   4.4*sigma

  Min. delta:    0.033
  Max. delta:   63.493
  Mean delta:    9.332

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.401
  Mean delta:    0.104

                       ----------Planar groups----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.055
  Mean delta:    0.012

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.011   0.071   2241  Z= 0.573
    Angle     :  1.957  10.888   4077  Z= 0.889
    Chirality :  0.104   0.401    176
    Planarity :  0.010   0.061    326
    Dihedral  :  8.500  63.493    768
    Min Nonbonded Distance : 1.714
  
  Molprobity Statistics.
    All-atom Clashscore : 5.41
    Ramachandran Plot:
      Outliers :  2.92 %
      Allowed  : 10.22 %
      Favored  : 86.86 %
    Rotamer:
      Outliers :  0.81 %
      Allowed  :  0.00 %
      Favored  : 99.19 %
    Cbeta Deviations :  1.52 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.00 %
      Twisted Proline : 0.00 %
      Twisted General : 0.00 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -0.90 (0.67), residues: 137
    helix:  0.80 (0.54), residues: 78
    sheet:  None (None), residues: 0
    loop : -2.65 (0.73), residues: 59
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.005   0.002   HIS A 139 
   PHE   0.085   0.025   PHE A  45 
   TYR   0.091   0.018   TYR A 111 
   ARG   0.018   0.004   ARG A  58 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.005   0.002   HIS A 139 
   PHE   0.072   0.023   PHE A  45 
   TYR   0.068   0.018   TYR A 111 
   ARG   0.011   0.002   ARG A  58 

                     ----------Asn/Gln/His flips----------                     

  No backwards Asn/Gln/His sidechains found.

=================================== Summary ===================================


End of input processing

=============================== Model properties ==============================


End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       


                        ----------Bond lengths----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000 (Z=  0.000)
  Max. delta:    0.050 (Z=  3.587)
  Mean delta:    0.016 (Z=  0.811)

                        ----------Bond angles----------                        

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000 (Z=  0.000)
  Max. delta:    0.070 (Z=  3.414)
  Mean delta:    0.016 (Z=  0.852)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 101  LYS  CA
   A 101  LYS  C
   A 102  PRO  N         116.90   124.95    -8.05  1.50e+00  2.88e+01   5.4*sigma
   A 134  HIS  ND1
   A 134  HIS  CG
   A 134  HIS  CD2       106.10   111.06    -4.96  1.00e+00  2.46e+01   5.0*sigma
   A 115  ALA  N
   A 115  ALA  CA
   A 115  ALA  CB        110.40   102.96     7.44  1.50e+00  2.46e+01   5.0*sigma
   A 113  LYS  CA
   A 113  LYS  C
   A 114  PRO  N         116.90   123.90    -7.00  1.50e+00  2.18e+01   4.7*sigma
   A  98  SER  C
   A  98  SER  CA
   A  98  SER  CB        110.10   101.56     8.54  1.90e+00  2.02e+01   4.5*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   110.58    -4.48  1.00e+00  2.01e+01   4.5*sigma
   A  43  HIS  ND1
   A  43  HIS  CG
   A  43  HIS  CD2       106.10   110.42    -4.32  1.00e+00  1.87e+01   4.3*sigma
   A 136  HIS  ND1
   A 136  HIS  CG
   A 136  HIS  CD2       106.10   110.37    -4.27  1.00e+00  1.83e+01   4.3*sigma
   A  43  HIS  CB
   A  43  HIS  CG
   A  43  HIS  ND1       122.70   116.42     6.28  1.50e+00  1.75e+01   4.2*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.28    -4.18  1.00e+00  1.75e+01   4.2*sigma
   A  45  PHE  CA
   A  45  PHE  CB
   A  45  PHE  CG        113.80   109.64     4.16  1.00e+00  1.73e+01   4.2*sigma
   A 134  HIS  C
   A 134  HIS  CA
   A 134  HIS  CB        110.10   102.43     7.67  1.90e+00  1.63e+01   4.0*sigma
   A  98  SER  N
   A  98  SER  CA
   A  98  SER  CB        110.50   117.33    -6.83  1.70e+00  1.61e+01   4.0*sigma
   A 138  HIS  ND1
   A 138  HIS  CG
   A 138  HIS  CD2       106.10   110.11    -4.01  1.00e+00  1.60e+01   4.0*sigma

  Min. delta:    0.003 (Z=  0.002)
  Max. delta:    8.537 (Z=  5.364)
  Mean delta:    2.208 (Z=  1.219)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  53  LEU  CA
   A  53  LEU  C
   A  54  PRO  N
   A  54  PRO  CA        180.00   156.19    23.81  5.00e+00  2.27e+01   4.8*sigma

  Min. delta:    0.018
  Max. delta:   56.208
  Mean delta:   11.033

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.298
  Mean delta:    0.105

                       ----------Planar groups----------                       

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  45  PHE  CA
   A  45  PHE  CB
   A  45  PHE  CG        113.80   105.38     8.42  1.00e+00  7.09e+01   8.4*sigma
   A 116  ASP  CA
   A 116  ASP  C
   A 117  PRO  N         116.90   128.04   -11.14  1.50e+00  5.51e+01   7.4*sigma
   A   5  THR  N
   A   5  THR  CA
   A   5  THR  CB        111.50   119.95    -8.45  1.70e+00  2.47e+01   5.0*sigma
   A  51  ILE  CA
   A  51  ILE  C
   A  52  PRO  N         116.90   124.21    -7.31  1.50e+00  2.37e+01   4.9*sigma
   A 113  LYS  CA
   A 113  LYS  C
   A 114  PRO  N         116.90   124.07    -7.17  1.50e+00  2.29e+01   4.8*sigma
   A 116  ASP  O
   A 116  ASP  C
   A 117  PRO  N         123.00   115.69     7.31  1.60e+00  2.09e+01   4.6*sigma
   A 101  LYS  CA
   A 101  LYS  C
   A 102  PRO  N         116.90   123.55    -6.65  1.50e+00  1.96e+01   4.4*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.51    -4.41  1.00e+00  1.95e+01   4.4*sigma
   A  45  PHE  C
   A  46  SER  N
   A  46  SER  CA        121.70   129.63    -7.93  1.80e+00  1.94e+01   4.4*sigma
   A  53  LEU  CA
   A  53  LEU  C
   A  54  PRO  N         116.90   123.39    -6.49  1.50e+00  1.87e+01   4.3*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.42    -4.32  1.00e+00  1.87e+01   4.3*sigma
   A 138  HIS  ND1
   A 138  HIS  CG
   A 138  HIS  CD2       106.10   110.42    -4.32  1.00e+00  1.86e+01   4.3*sigma
   A  20  THR  CA
   A  20  THR  CB
   A  20  THR  OG1       109.60   116.07    -6.47  1.50e+00  1.86e+01   4.3*sigma
   A 138  HIS  C
   A 139  HIS  N
   A 139  HIS  CA        121.70   129.29    -7.59  1.80e+00  1.78e+01   4.2*sigma
   A  43  HIS  ND1
   A  43  HIS  CG
   A  43  HIS  CD2       106.10   110.27    -4.17  1.00e+00  1.74e+01   4.2*sigma
   A 116  ASP  CA
   A 116  ASP  CB
   A 116  ASP  CG        112.60   116.77    -4.17  1.00e+00  1.74e+01   4.2*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   110.25    -4.15  1.00e+00  1.72e+01   4.2*sigma
   A 134  HIS  ND1
   A 134  HIS  CG
   A 134  HIS  CD2       106.10   110.23    -4.13  1.00e+00  1.71e+01   4.1*sigma
   A  29  ASP  CA
   A  29  ASP  CB
   A  29  ASP  CG        112.60   116.66    -4.06  1.00e+00  1.65e+01   4.1*sigma
   A 136  HIS  ND1
   A 136  HIS  CG
   A 136  HIS  CD2       106.10   110.15    -4.05  1.00e+00  1.64e+01   4.1*sigma
   A   1  MET  N
   A   1  MET  CA
   A   1  MET  C         111.00    99.70    11.30  2.80e+00  1.63e+01   4.0*sigma

  Min. delta:    0.001 (Z=  0.001)
  Max. delta:   11.298 (Z=  8.418)
  Mean delta:    2.284 (Z=  1.305)

                      ----------Dihedral angles----------                      

  atoms                 rms_deltas   delta_max    residual   deviation
   A  91  TYR  CB
   A  91  TYR  CG
   A  91  TYR  CD1
   A  91  TYR  CD2
   A  91  TYR  CE1
   A  91  TYR  CE2
   A  91  TYR  CZ
   A  91  TYR  OH            0.066       0.099       87.27   4.9*sigma

  Min. delta:    0.000
  Max. delta:    0.083
  Mean delta:    0.015

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  21  ARG  CA
   A  21  ARG  C
   A  22  PRO  N
   A  22  PRO  CA        180.00   155.32    24.68  5.00e+00  2.44e+01   4.9*sigma
   A  85  LYS  CA
   A  85  LYS  C
   A  86  ILE  N
   A  86  ILE  CA        180.00   159.86    20.14  5.00e+00  1.62e+01   4.0*sigma

  Min. delta:    0.008
  Max. delta:   77.187
  Mean delta:   10.417

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.001
  Max. delta:    0.275
  Mean delta:    0.095

                       ----------Planar groups----------                       

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.053
  Mean delta:    0.014

============================= Hydrogen validation =============================

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   


                ----------H/D atoms in the input model----------               

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

                       ----------Angle outliers----------                      

   A  98  SER  HA , Angle N-CA-HA, observed: 97.809, delta from target: 12.191

============================ Molprobity validation ============================

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.011   0.050   2241  Z= 0.577
    Angle     :  1.978  12.191   4077  Z= 0.889
    Chirality :  0.105   0.298    176
    Planarity :  0.013   0.104    326
    Dihedral  : 10.704  58.975    768
    Min Nonbonded Distance : 1.706
  
  Molprobity Statistics.
    All-atom Clashscore : 5.41
    Ramachandran Plot:
      Outliers :  2.92 %
      Allowed  :  2.92 %
      Favored  : 94.16 %
    Rotamer:
      Outliers :  0.81 %
      Allowed  :  4.03 %
      Favored  : 95.16 %
    Cbeta Deviations :  0.76 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.00 %
      Twisted Proline : 0.00 %
      Twisted General : 0.00 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole:  0.70 (0.75), residues: 137
    helix:  1.45 (0.61), residues: 70
    sheet: -1.69 (1.03), residues: 16
    loop : -0.03 (1.03), residues: 51
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.004   0.001   HIS A 139 
   PHE   0.062   0.021   PHE A  15 
   TYR   0.206   0.030   TYR A  91 
   ARG   0.033   0.007   ARG A  58 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.004   0.001   HIS A 139 
   PHE   0.045   0.020   PHE A  15 
   TYR   0.126   0.025   TYR A 111 
   ARG   0.016   0.003   ARG A  21 

                     ----------Asn/Gln/His flips----------                     

  No backwards Asn/Gln/His sidechains found.

=================================== Summary ===================================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.011   0.070   2241  Z= 0.607
    Angle     :  2.012  11.298   4077  Z= 0.935
    Chirality :  0.095   0.275    176
    Planarity :  0.011   0.063    326
    Dihedral  : 10.199  77.187    768
    Min Nonbonded Distance : 1.742
  
  Molprobity Statistics.
    All-atom Clashscore : 1.80
    Ramachandran Plot:
      Outliers :  5.84 %
      Allowed  : 12.41 %
      Favored  : 81.75 %
    Rotamer:
      Outliers :  0.00 %
      Allowed  :  0.00 %
      Favored  : 100.00 %
    Cbeta Deviations :  0.00 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.00 %
      Twisted Proline : 0.00 %
      Twisted General : 0.00 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -1.09 (0.73), residues: 137
    helix:  0.88 (0.62), residues: 66
    sheet:  None (None), residues: 0
    loop : -2.44 (0.75), residues: 71
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.003   0.001   HIS A 139 
   PHE   0.078   0.020   PHE A  67 
   TYR   0.122   0.027   TYR A  81 
   ARG   0.036   0.009   ARG A 127 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.003   0.001   HIS A 139 
   PHE   0.052   0.017   PHE A  67 
   TYR   0.073   0.024   TYR A  81 
   ARG   0.017   0.004   ARG A 127 

                     ----------Asn/Gln/His flips----------                     

  No backwards Asn/Gln/His sidechains found.

=================================== Summary ===================================

  Ramachandran outliers =   9.49 %
                favored =  81.02 %
  Rotamer outliers      =   0.81 %
  C-beta deviations     =     8
  Clashscore            =   5.86
  RMS(bonds)            =   0.0117
  RMS(angles)           =   2.29
  MolProbity score      =   2.04

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py
  Ramachandran outliers =   2.92 %
                favored =  86.86 %
  Rotamer outliers      =   0.81 %
  C-beta deviations     =     2
  Clashscore            =   5.41
  RMS(bonds)            =   0.0110
  RMS(angles)           =   1.96
  MolProbity score      =   1.92

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py
  Ramachandran outliers =   3.65 %
                favored =  89.05 %
  Rotamer outliers      =   1.61 %
  C-beta deviations     =     3
  Clashscore            =   4.96
  RMS(bonds)            =   0.0114
  RMS(angles)           =   2.05
  MolProbity score      =   1.99

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py

  Symmetric amino acids flipped
    Residue "A GLU   16": "OE1" <-> "OE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   24": "OE1" <-> "OE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   75": "OE1" <-> "OE2"
    Residue "A GLU   84": "OE1" <-> "OE2"
    Residue "A ASP  116": "OD1" <-> "OD2"
    Residue "A GLU  123": "OE1" <-> "OE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU  133": "OE1" <-> "OE2"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""
  Ramachandran outliers =   5.84 %
                favored =  81.75 %
  Rotamer outliers      =   0.00 %
  C-beta deviations     =     0
  Clashscore            =   1.80
  RMS(bonds)            =   0.0114
  RMS(angles)           =   2.01
  MolProbity score      =   1.65

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py
  Ramachandran outliers =   2.92 %
                favored =  94.16 %
  Rotamer outliers      =   0.81 %
  C-beta deviations     =     1
  Clashscore            =   5.41
  RMS(bonds)            =   0.0112
  RMS(angles)           =   1.98
  MolProbity score      =   1.69

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py
Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  

Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  


End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000 (Z=  0.001)
  Max. delta:    0.062 (Z=  3.570)
  Mean delta:    0.015 (Z=  0.811)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  51  ILE  CA
   A  51  ILE  C
   A  52  PRO  N         116.90   126.79    -9.89  1.50e+00  4.35e+01   6.6*sigma
   A  51  ILE  O
   A  51  ILE  C
   A  52  PRO  N         123.00   114.10     8.90  1.60e+00  3.10e+01   5.6*sigma
   A 118  ASP  CA
   A 118  ASP  CB
   A 118  ASP  CG        112.60   117.37    -4.77  1.00e+00  2.28e+01   4.8*sigma
   A  52  PRO  N
   A  52  PRO  CD
   A  52  PRO  CG        103.20   110.18    -6.98  1.50e+00  2.17e+01   4.7*sigma
   A 134  HIS  ND1
   A 134  HIS  CG
   A 134  HIS  CD2       106.10   110.68    -4.58  1.00e+00  2.09e+01   4.6*sigma
   A  43  HIS  ND1
   A  43  HIS  CG
   A  43  HIS  CD2       106.10   110.65    -4.55  1.00e+00  2.07e+01   4.6*sigma
   A  61  LEU  CD1
   A  61  LEU  CG
   A  61  LEU  CD2       110.80   100.94     9.86  2.20e+00  2.01e+01   4.5*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.44    -4.34  1.00e+00  1.89e+01   4.3*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.44    -4.34  1.00e+00  1.88e+01   4.3*sigma
   A 136  HIS  ND1
   A 136  HIS  CG
   A 136  HIS  CD2       106.10   110.41    -4.31  1.00e+00  1.86e+01   4.3*sigma
   A  74  ASP  C
   A  75  GLU  N
   A  75  GLU  CA        121.70   129.37    -7.67  1.80e+00  1.82e+01   4.3*sigma
   A 116  ASP  CA
   A 116  ASP  CB
   A 116  ASP  CG        112.60   116.85    -4.25  1.00e+00  1.80e+01   4.2*sigma
   A 138  HIS  ND1
   A 138  HIS  CG
   A 138  HIS  CD2       106.10   110.25    -4.15  1.00e+00  1.72e+01   4.2*sigma
   A 115  ALA  C
   A 116  ASP  N
   A 116  ASP  CA        121.70   128.92    -7.22  1.80e+00  1.61e+01   4.0*sigma

  Min. delta:    0.001 (Z=  0.001)
  Max. delta:    9.891 (Z=  6.594)
  Mean delta:    2.166 (Z=  1.221)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 118  ASP  CA
   A 118  ASP  C
   A 119  LEU  N
   A 119  LEU  CA        180.00   138.32    41.68  5.00e+00  6.95e+01   8.3*sigma
   A 116  ASP  CA
   A 116  ASP  C
   A 117  PRO  N
   A 117  PRO  CA        180.00   144.99    35.01  5.00e+00  4.90e+01   7.0*sigma
   A 138  HIS  CA
   A 138  HIS  C
   A 139  HIS  N
   A 139  HIS  CA        180.00   157.34    22.66  5.00e+00  2.05e+01   4.5*sigma
   A  12  TYR  CA
   A  12  TYR  C
   A  13  SER  N
   A  13  SER  CA        180.00  -159.46   -20.54  5.00e+00  1.69e+01   4.1*sigma
   A 120  GLU  CA
   A 120  GLU  C
   A 121  GLY  N
   A 121  GLY  CA        180.00   159.86    20.14  5.00e+00  1.62e+01   4.0*sigma

  Min. delta:    0.005
  Max. delta:   71.595
  Mean delta:   10.098

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.597
  Mean delta:    0.123

                       ----------Planar groups----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.064
  Mean delta:    0.011

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

                       ----------Angle outliers----------                      

   A 139  HIS  HA , Angle C-CA-HA, observed: 95.366, delta from target: 13.634

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.011   0.062   2241  Z= 0.577
    Angle     :  1.980  13.634   4077  Z= 0.895
    Chirality :  0.123   0.597    176
    Planarity :  0.009   0.064    326
    Dihedral  :  8.982  71.595    768
    Min Nonbonded Distance : 1.619
  
  Molprobity Statistics.
    All-atom Clashscore : 4.51
    Ramachandran Plot:
      Outliers :  4.38 %
      Allowed  : 11.68 %
      Favored  : 83.94 %
    Rotamer:
      Outliers :  0.00 %
      Allowed  :  0.81 %
      Favored  : 99.19 %
    Cbeta Deviations :  3.79 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.76 %
      Twisted Proline : 14.29 %
      Twisted General : 0.76 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -1.62 (0.66), residues: 137
    helix:  1.12 (0.59), residues: 64
    sheet:  None (None), residues: 0
    loop : -3.37 (0.59), residues: 73
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.005   0.001   HIS A 139 
   PHE   0.044   0.011   PHE A  15 
   TYR   0.071   0.012   TYR A  12 
   ARG   0.012   0.003   ARG A 127 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.005   0.001   HIS A 139 
   PHE   0.041   0.012   PHE A  15 
   TYR   0.042   0.010   TYR A  89 
   ARG   0.008   0.002   ARG A 127 

                     ----------Asn/Gln/His flips----------                     

  No backwards Asn/Gln/His sidechains found.

=================================== Summary ===================================


End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000 (Z=  0.001)
  Max. delta:    0.077 (Z=  3.677)
  Mean delta:    0.016 (Z=  0.839)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 117  PRO  N
   A 117  PRO  CA
   A 117  PRO  C         112.10   130.01   -17.91  2.50e+00  5.13e+01   7.2*sigma
   A 137  HIS  C
   A 138  HIS  N
   A 138  HIS  CA        121.70   133.10   -11.40  1.80e+00  4.01e+01   6.3*sigma
   A 116  ASP  O
   A 116  ASP  C
   A 117  PRO  N         123.00   114.24     8.76  1.60e+00  3.00e+01   5.5*sigma
   A 116  ASP  CA
   A 116  ASP  CB
   A 116  ASP  CG        112.60   117.92    -5.32  1.00e+00  2.83e+01   5.3*sigma
   A  47  ASP  CA
   A  47  ASP  CB
   A  47  ASP  CG        112.60   117.70    -5.10  1.00e+00  2.60e+01   5.1*sigma
   A 113  LYS  CA
   A 113  LYS  C
   A 114  PRO  N         116.90   124.39    -7.49  1.50e+00  2.49e+01   5.0*sigma
   A 137  HIS  O
   A 137  HIS  C
   A 138  HIS  N         123.00   115.12     7.88  1.60e+00  2.43e+01   4.9*sigma
   A 116  ASP  CA
   A 116  ASP  C
   A 117  PRO  N         116.90   124.25    -7.35  1.50e+00  2.40e+01   4.9*sigma
   A 137  HIS  CA
   A 137  HIS  C
   A 138  HIS  N         116.20   125.90    -9.70  2.00e+00  2.35e+01   4.8*sigma
   A  69  ALA  N
   A  69  ALA  CA
   A  69  ALA  CB        110.40   103.17     7.23  1.50e+00  2.32e+01   4.8*sigma
   A 117  PRO  CA
   A 117  PRO  C
   A 118  ASP  N         116.20   125.68    -9.48  2.00e+00  2.25e+01   4.7*sigma
   A 136  HIS  ND1
   A 136  HIS  CG
   A 136  HIS  CD2       106.10   110.73    -4.63  1.00e+00  2.15e+01   4.6*sigma
   A 135  HIS  O
   A 135  HIS  C
   A 136  HIS  N         123.00   115.68     7.32  1.60e+00  2.09e+01   4.6*sigma
   A 138  HIS  ND1
   A 138  HIS  CG
   A 138  HIS  CD2       106.10   110.63    -4.53  1.00e+00  2.05e+01   4.5*sigma
   A  51  ILE  CA
   A  51  ILE  C
   A  52  PRO  N         116.90   123.62    -6.72  1.50e+00  2.01e+01   4.5*sigma
   A 139  HIS  N
   A 139  HIS  CA
   A 139  HIS  CB        110.50   118.02    -7.52  1.70e+00  1.96e+01   4.4*sigma
   A 134  HIS  ND1
   A 134  HIS  CG
   A 134  HIS  CD2       106.10   110.52    -4.42  1.00e+00  1.96e+01   4.4*sigma
   A  43  HIS  ND1
   A  43  HIS  CG
   A  43  HIS  CD2       106.10   110.52    -4.42  1.00e+00  1.95e+01   4.4*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   110.25    -4.15  1.00e+00  1.73e+01   4.2*sigma
   A  20  THR  CA
   A  20  THR  CB
   A  20  THR  OG1       109.60   115.62    -6.02  1.50e+00  1.61e+01   4.0*sigma

  Min. delta:    0.006 (Z=  0.002)
  Max. delta:   17.905 (Z=  7.162)
  Mean delta:    2.305 (Z=  1.282)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 137  HIS  CA
   A 137  HIS  C
   A 138  HIS  N
   A 138  HIS  CA        180.00    46.86   133.14  5.00e+00  7.09e+02  26.6*sigma
   A 135  HIS  CA
   A 135  HIS  C
   A 136  HIS  N
   A 136  HIS  CA        180.00    60.18   119.82  5.00e+00  5.74e+02  24.0*sigma
   A 138  HIS  CA
   A 138  HIS  C
   A 139  HIS  N
   A 139  HIS  CA        180.00   138.05    41.95  5.00e+00  7.04e+01   8.4*sigma
   A 116  ASP  CA
   A 116  ASP  C
   A 117  PRO  N
   A 117  PRO  CA        180.00  -143.99   -36.01  5.00e+00  5.19e+01   7.2*sigma
   A  21  ARG  CA
   A  21  ARG  C
   A  22  PRO  N
   A  22  PRO  CA        180.00   152.19    27.81  5.00e+00  3.09e+01   5.6*sigma
   A 115  ALA  CA
   A 115  ALA  C
   A 116  ASP  N
   A 116  ASP  CA        180.00   159.91    20.09  5.00e+00  1.62e+01   4.0*sigma

  Min. delta:    0.013
  Max. delta:  133.136
  Mean delta:   13.923

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.001
  Max. delta:    0.704
  Mean delta:    0.114

                       ----------Planar groups----------                       

  atoms                 rms_deltas   delta_max    residual   deviation
   A  15  PHE  CB
   A  15  PHE  CG
   A  15  PHE  CD1
   A  15  PHE  CD2
   A  15  PHE  CE1
   A  15  PHE  CE2
   A  15  PHE  CZ            0.120       0.173      254.05   8.6*sigma
   A 116  ASP  C
   A 117  PRO  N
   A 117  PRO  CA
   A 117  PRO  CD            0.126       0.218       25.40   4.4*sigma
   A 136  HIS  CB
   A 136  HIS  CG
   A 136  HIS  ND1
   A 136  HIS  CD2
   A 136  HIS  CE1
   A 136  HIS  NE2           0.057       0.081       48.54   4.0*sigma

  Min. delta:    0.000
  Max. delta:    0.126
  Mean delta:    0.019

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

                       ----------Angle outliers----------                      

   A  81  TYR  HA , Angle N-CA-HA, observed: 97.657, delta from target: 12.343
   A 117  PRO  HA , Angle CB-CA-HA, observed: 124.609, delta from target: -15.609
   A 117  PRO  HA , Angle C-CA-HA, observed: 91.506, delta from target: 17.494

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.011   0.077   2241  Z= 0.597
    Angle     :  2.066  17.905   4077  Z= 0.934
    Chirality :  0.114   0.704    176
    Planarity :  0.016   0.173    326
    Dihedral  : 11.696 133.136    768
    Min Nonbonded Distance : 1.659
  
  Molprobity Statistics.
    All-atom Clashscore : 4.06
    Ramachandran Plot:
      Outliers :  4.38 %
      Allowed  :  8.76 %
      Favored  : 86.86 %
    Rotamer:
      Outliers :  0.81 %
      Allowed  :  1.61 %
      Favored  : 97.58 %
    Cbeta Deviations :  1.52 %
    Peptide Plane:
      Cis-proline     : 14.29 %
      Cis-general     : 0.00 %
      Twisted Proline : 14.29 %
      Twisted General : 2.29 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -1.06 (0.72), residues: 137
    helix:  1.24 (0.60), residues: 62
    sheet:  None (None), residues: 0
    loop : -2.59 (0.73), residues: 75
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.005   0.002   HIS A 136 
   PHE   0.329   0.050   PHE A  15 
   TYR   0.116   0.018   TYR A  12 
   ARG   0.026   0.007   ARG A  21 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.005   0.002   HIS A 136 
   PHE   0.179   0.042   PHE A  15 
   TYR   0.067   0.017   TYR A  91 
   ARG   0.015   0.003   ARG A  58 

                     ----------Asn/Gln/His flips----------                     

  No backwards Asn/Gln/His sidechains found.

=================================== Summary ===================================


End of input processing

=============================== Model properties ==============================


End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       


                        ----------Bond lengths----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000 (Z=  0.001)
  Max. delta:    0.050 (Z=  3.416)
  Mean delta:    0.015 (Z=  0.781)

                        ----------Bond angles----------                        

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000 (Z=  0.001)
  Max. delta:    0.065 (Z=  3.436)
  Mean delta:    0.016 (Z=  0.861)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 101  LYS  CA
   A 101  LYS  C
   A 102  PRO  N         116.90   126.45    -9.55  1.50e+00  4.05e+01   6.4*sigma
   A 138  HIS  C
   A 139  HIS  N
   A 139  HIS  CA        121.70   132.97   -11.27  1.80e+00  3.92e+01   6.3*sigma
   A  51  ILE  CA
   A  51  ILE  C
   A  52  PRO  N         116.90   124.87    -7.97  1.50e+00  2.82e+01   5.3*sigma
   A  29  ASP  CA
   A  29  ASP  CB
   A  29  ASP  CG        112.60   117.86    -5.26  1.00e+00  2.77e+01   5.3*sigma
   A  88  ASP  CA
   A  88  ASP  CB
   A  88  ASP  CG        112.60   107.43     5.17  1.00e+00  2.67e+01   5.2*sigma
   A  43  HIS  ND1
   A  43  HIS  CG
   A  43  HIS  CD2       106.10   110.53    -4.43  1.00e+00  1.96e+01   4.4*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.47    -4.37  1.00e+00  1.91e+01   4.4*sigma
   A 139  HIS  CA
   A 139  HIS  CB
   A 139  HIS  CG        113.80   118.06    -4.26  1.00e+00  1.82e+01   4.3*sigma
   A 139  HIS  N
   A 139  HIS  CA
   A 139  HIS  C         111.00   122.75   -11.75  2.80e+00  1.76e+01   4.2*sigma
   A 134  HIS  ND1
   A 134  HIS  CG
   A 134  HIS  CD2       106.10   110.22    -4.12  1.00e+00  1.70e+01   4.1*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   110.20    -4.10  1.00e+00  1.68e+01   4.1*sigma
   A 138  HIS  ND1
   A 138  HIS  CG
   A 138  HIS  CD2       106.10   110.15    -4.05  1.00e+00  1.64e+01   4.0*sigma
   A 136  HIS  ND1
   A 136  HIS  CG
   A 136  HIS  CD2       106.10   110.13    -4.03  1.00e+00  1.63e+01   4.0*sigma

  Min. delta:    0.002 (Z=  0.001)
  Max. delta:   11.781 (Z=  6.365)
  Mean delta:    2.093 (Z=  1.166)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 116  ASP  CA
   A 116  ASP  C
   A 117  PRO  N
   A 117  PRO  CA        180.00   142.49    37.51  5.00e+00  5.63e+01   7.5*sigma
   A  88  ASP  CA
   A  88  ASP  C
   A  89  TYR  N
   A  89  TYR  CA        180.00   145.75    34.25  5.00e+00  4.69e+01   6.8*sigma
   A 115  ALA  CA
   A 115  ALA  C
   A 116  ASP  N
   A 116  ASP  CA        180.00   156.02    23.98  5.00e+00  2.30e+01   4.8*sigma
   A 138  HIS  CA
   A 138  HIS  C
   A 139  HIS  N
   A 139  HIS  CA        180.00   157.16    22.84  5.00e+00  2.09e+01   4.6*sigma

  Min. delta:    0.012
  Max. delta:   83.443
  Mean delta:   11.162

                       ----------Chiral volumes----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 114  PRO  N
   A 114  PRO  CA
   A 114  PRO  C         112.10   129.93   -17.83  2.50e+00  5.09e+01   7.1*sigma
   A  88  ASP  CA
   A  88  ASP  CB
   A  88  ASP  CG        112.60   119.55    -6.95  1.00e+00  4.83e+01   6.9*sigma
   A 113  LYS  CA
   A 113  LYS  C
   A 114  PRO  N         116.90   127.26   -10.36  1.50e+00  4.77e+01   6.9*sigma
   A  15  PHE  CA
   A  15  PHE  CB
   A  15  PHE  CG        113.80   108.16     5.64  1.00e+00  3.18e+01   5.6*sigma
   A 113  LYS  O
   A 113  LYS  C
   A 114  PRO  N         123.00   114.82     8.18  1.60e+00  2.61e+01   5.1*sigma
   A  51  ILE  CA
   A  51  ILE  C
   A  52  PRO  N         116.90   124.17    -7.27  1.50e+00  2.35e+01   4.8*sigma
   A  61  LEU  CD1
   A  61  LEU  CG
   A  61  LEU  CD2       110.80   100.26    10.54  2.20e+00  2.30e+01   4.8*sigma
   A 114  PRO  CA
   A 114  PRO  C
   A 115  ALA  N         116.20   125.63    -9.43  2.00e+00  2.22e+01   4.7*sigma
   A 138  HIS  ND1
   A 138  HIS  CG
   A 138  HIS  CD2       106.10   110.71    -4.61  1.00e+00  2.12e+01   4.6*sigma
   A 113  LYS  C
   A 113  LYS  CA
   A 113  LYS  CB        110.10   118.73    -8.63  1.90e+00  2.06e+01   4.5*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.60    -4.50  1.00e+00  2.03e+01   4.5*sigma
   A 134  HIS  ND1
   A 134  HIS  CG
   A 134  HIS  CD2       106.10   110.43    -4.33  1.00e+00  1.87e+01   4.3*sigma
   A 136  HIS  ND1
   A 136  HIS  CG
   A 136  HIS  CD2       106.10   110.42    -4.32  1.00e+00  1.87e+01   4.3*sigma
   A  43  HIS  ND1
   A  43  HIS  CG
   A  43  HIS  CD2       106.10   110.33    -4.23  1.00e+00  1.79e+01   4.2*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   110.31    -4.21  1.00e+00  1.77e+01   4.2*sigma
   A  14  VAL  C
   A  15  PHE  N
   A  15  PHE  CA        121.70   129.26    -7.56  1.80e+00  1.77e+01   4.2*sigma
   A  21  ARG  CA
   A  21  ARG  C
   A  22  PRO  N         116.90   123.16    -6.26  1.50e+00  1.74e+01   4.2*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.26    -4.16  1.00e+00  1.73e+01   4.2*sigma
   A 119  LEU  O
   A 119  LEU  C
   A 120  GLU  N         123.00   116.40     6.60  1.60e+00  1.70e+01   4.1*sigma
   A 129  ARG  C
   A 130  SER  N
   A 130  SER  CA        121.70   128.91    -7.21  1.80e+00  1.60e+01   4.0*sigma

  Min. delta:    0.001 (Z=  0.000)
  Max. delta:   17.832 (Z=  7.133)
  Mean delta:    2.291 (Z=  1.272)

                      ----------Dihedral angles----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.001
  Max. delta:    0.405
  Mean delta:    0.097

                       ----------Planar groups----------                       

  atoms                 rms_deltas   delta_max    residual   deviation
   A  15  PHE  CB
   A  15  PHE  CG
   A  15  PHE  CD1
   A  15  PHE  CD2
   A  15  PHE  CE1
   A  15  PHE  CE2
   A  15  PHE  CZ            0.061       0.096       65.66   4.8*sigma

  Min. delta:    0.000
  Max. delta:    0.175
  Mean delta:    0.019

============================= Hydrogen validation =============================

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 129  ARG  CA
   A 129  ARG  C
   A 130  SER  N
   A 130  SER  CA        180.00   156.03    23.97  5.00e+00  2.30e+01   4.8*sigma
   A 117  PRO  CA
   A 117  PRO  C
   A 118  ASP  N
   A 118  ASP  CA        180.00   156.85    23.15  5.00e+00  2.14e+01   4.6*sigma
   A 113  LYS  CA
   A 113  LYS  C
   A 114  PRO  N
   A 114  PRO  CA        180.00  -157.81   -22.19  5.00e+00  1.97e+01   4.4*sigma
   A 130  SER  CA
   A 130  SER  C
   A 131  ILE  N
   A 131  ILE  CA        180.00   159.75    20.25  5.00e+00  1.64e+01   4.1*sigma

  Min. delta:    0.013
  Max. delta:   63.814
  Mean delta:   10.005

                       ----------Chiral volumes----------                      


                ----------H/D atoms in the input model----------               

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.688
  Mean delta:    0.122

                       ----------Planar groups----------                       

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  atoms                 rms_deltas   delta_max    residual   deviation
   A  15  PHE  CB
   A  15  PHE  CG
   A  15  PHE  CD1
   A  15  PHE  CD2
   A  15  PHE  CE1
   A  15  PHE  CE2
   A  15  PHE  CZ            0.088       0.123      135.70   6.2*sigma

  Min. delta:    0.000
  Max. delta:    0.088
  Mean delta:    0.016

============================= Hydrogen validation =============================

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   


                ----------H/D atoms in the input model----------               

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

============================ Molprobity validation ============================

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

                       ----------Angle outliers----------                      

   A  61  LEU  HG , Angle CD2-CG-HG, observed: 121.080, delta from target: -13.080
   A 114  PRO  HA , Angle CB-CA-HA, observed: 124.552, delta from target: -15.552
   A 114  PRO  HA , Angle C-CA-HA, observed: 92.109, delta from target: 16.891

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.011   0.050   2241  Z= 0.556
    Angle     :  1.878  11.781   4077  Z= 0.849
    Chirality :  0.097   0.405    176
    Planarity :  0.015   0.175    326
    Dihedral  : 10.252  83.443    768
    Min Nonbonded Distance : 1.712
  
  Molprobity Statistics.
    All-atom Clashscore : 4.06
    Ramachandran Plot:
      Outliers :  0.73 %
      Allowed  : 16.06 %
      Favored  : 83.21 %
    Rotamer:
      Outliers :  0.81 %
      Allowed  :  3.23 %
      Favored  : 95.97 %
    Cbeta Deviations :  0.00 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.00 %
      Twisted Proline : 14.29 %
      Twisted General : 0.76 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -0.54 (0.77), residues: 137
    helix:  2.27 (0.66), residues: 57
    sheet:  None (None), residues: 0
    loop : -2.57 (0.74), residues: 80
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.005   0.001   HIS A 139 
   PHE   0.133   0.024   PHE A  15 
   TYR   0.087   0.021   TYR A  68 
   ARG   0.064   0.014   ARG A  58 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.005   0.001   HIS A 139 
   PHE   0.096   0.024   PHE A  15 
   TYR   0.062   0.019   TYR A  12 
   ARG   0.015   0.004   ARG A  58 

                     ----------Asn/Gln/His flips----------                     

  No backwards Asn/Gln/His sidechains found.

=================================== Summary ===================================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.012   0.065   2241  Z= 0.613
    Angle     :  2.046  17.832   4077  Z= 0.925
    Chirality :  0.122   0.688    176
    Planarity :  0.014   0.130    326
    Dihedral  :  9.289  63.814    768
    Min Nonbonded Distance : 1.750
  
  Molprobity Statistics.
    All-atom Clashscore : 3.61
    Ramachandran Plot:
      Outliers :  6.57 %
      Allowed  : 13.14 %
      Favored  : 80.29 %
    Rotamer:
      Outliers :  0.81 %
      Allowed  :  0.00 %
      Favored  : 99.19 %
    Cbeta Deviations :  2.27 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.00 %
      Twisted Proline : 0.00 %
      Twisted General : 0.00 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -2.16 (0.67), residues: 137
    helix:  1.74 (0.64), residues: 58
    sheet:  None (None), residues: 0
    loop : -4.29 (0.48), residues: 79
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.006   0.002   HIS A  43 
   PHE   0.246   0.047   PHE A  15 
   TYR   0.125   0.019   TYR A 105 
   ARG   0.041   0.015   ARG A  21 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.006   0.002   HIS A  43 
   PHE   0.130   0.038   PHE A  15 
   TYR   0.058   0.016   TYR A 105 
   ARG   0.020   0.007   ARG A  21 

                     ----------Asn/Gln/His flips----------                     

  No backwards Asn/Gln/His sidechains found.

=================================== Summary ===================================


End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000 (Z=  0.000)
  Max. delta:    0.063 (Z=  3.492)
  Mean delta:    0.016 (Z=  0.845)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 114  PRO  N
   A 114  PRO  CA
   A 114  PRO  C         112.10   127.86   -15.76  2.50e+00  3.98e+01   6.3*sigma
   A  77  ILE  CA
   A  77  ILE  CB
   A  77  ILE  CG1       110.40   120.52   -10.12  1.70e+00  3.54e+01   6.0*sigma
   A  30  ILE  CA
   A  30  ILE  CB
   A  30  ILE  CG1       110.40   120.21    -9.81  1.70e+00  3.33e+01   5.8*sigma
   A 101  LYS  CA
   A 101  LYS  C
   A 102  PRO  N         116.90   125.43    -8.53  1.50e+00  3.23e+01   5.7*sigma
   A  74  ASP  N
   A  74  ASP  CA
   A  74  ASP  C         111.00    95.46    15.54  2.80e+00  3.08e+01   5.5*sigma
   A  15  PHE  CA
   A  15  PHE  CB
   A  15  PHE  CG        113.80   108.36     5.44  1.00e+00  2.96e+01   5.4*sigma
   A   2  LEU  CB
   A   2  LEU  CG
   A   2  LEU  CD1       110.70   124.70   -14.00  3.00e+00  2.18e+01   4.7*sigma
   A  66  GLN  CB
   A  66  GLN  CG
   A  66  GLN  CD        112.60   120.53    -7.93  1.70e+00  2.18e+01   4.7*sigma
   A 134  HIS  ND1
   A 134  HIS  CG
   A 134  HIS  CD2       106.10   110.65    -4.55  1.00e+00  2.07e+01   4.6*sigma
   A 136  HIS  ND1
   A 136  HIS  CG
   A 136  HIS  CD2       106.10   110.41    -4.31  1.00e+00  1.86e+01   4.3*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.40    -4.30  1.00e+00  1.85e+01   4.3*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.34    -4.24  1.00e+00  1.79e+01   4.2*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   110.27    -4.17  1.00e+00  1.74e+01   4.2*sigma
   A 113  LYS  C
   A 113  LYS  CA
   A 113  LYS  CB        110.10   117.89    -7.79  1.90e+00  1.68e+01   4.1*sigma
   A  97  SER  N
   A  97  SER  CA
   A  97  SER  CB        110.50   117.37    -6.87  1.70e+00  1.63e+01   4.0*sigma

  Min. delta:    0.001 (Z=  0.000)
  Max. delta:   15.762 (Z=  6.305)
  Mean delta:    2.264 (Z=  1.239)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 120  GLU  CA
   A 120  GLU  C
   A 121  GLY  N
   A 121  GLY  CA        180.00   144.17    35.83  5.00e+00  5.14e+01   7.2*sigma
   A 113  LYS  CA
   A 113  LYS  C
   A 114  PRO  N
   A 114  PRO  CA        180.00  -155.66   -24.34  5.00e+00  2.37e+01   4.9*sigma
   A 121  GLY  CA
   A 121  GLY  C
   A 122  ILE  N
   A 122  ILE  CA        180.00   156.20    23.80  5.00e+00  2.27e+01   4.8*sigma
   A  99  LEU  CA
   A  99  LEU  C
   A 100  GLN  N
   A 100  GLN  CA        180.00   157.34    22.66  5.00e+00  2.05e+01   4.5*sigma
   A 138  HIS  CA
   A 138  HIS  C
   A 139  HIS  N
   A 139  HIS  CA        180.00   158.57    21.43  5.00e+00  1.84e+01   4.3*sigma
   A 117  PRO  CA
   A 117  PRO  C
   A 118  ASP  N
   A 118  ASP  CA        180.00   158.77    21.23  5.00e+00  1.80e+01   4.2*sigma
   A 118  ASP  CA
   A 118  ASP  C
   A 119  LEU  N
   A 119  LEU  CA        180.00   159.29    20.71  5.00e+00  1.72e+01   4.1*sigma
   A 131  ILE  CA
   A 131  ILE  C
   A 132  LEU  N
   A 132  LEU  CA        180.00   159.78    20.22  5.00e+00  1.64e+01   4.0*sigma

  Min. delta:    0.011
  Max. delta:   64.448
  Mean delta:   10.547

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.001
  Max. delta:    0.596
  Mean delta:    0.120

                       ----------Planar groups----------                       

  atoms                 rms_deltas   delta_max    residual   deviation
   A 113  LYS  C
   A 114  PRO  N
   A 114  PRO  CA
   A 114  PRO  CD            0.142       0.246       32.48   4.9*sigma

  Min. delta:    0.000
  Max. delta:    0.142
  Mean delta:    0.016

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

                       ----------Angle outliers----------                      

   A 114  PRO  HA , Angle CB-CA-HA, observed: 123.118, delta from target: -14.118
   A   2  LEU  HG , Angle CB-CG-HG, observed: 94.692, delta from target: 14.308
   A 114  PRO  HA , Angle C-CA-HA, observed: 93.954, delta from target: 15.046

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.011   0.063   2241  Z= 0.602
    Angle     :  2.048  15.762   4077  Z= 0.911
    Chirality :  0.120   0.596    176
    Planarity :  0.013   0.142    326
    Dihedral  :  9.385  87.099    768
    Min Nonbonded Distance : 1.679
  
  Molprobity Statistics.
    All-atom Clashscore : 4.51
    Ramachandran Plot:
      Outliers :  5.11 %
      Allowed  :  6.57 %
      Favored  : 88.32 %
    Rotamer:
      Outliers :  0.81 %
      Allowed  :  0.81 %
      Favored  : 98.39 %
    Cbeta Deviations :  1.52 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.00 %
      Twisted Proline : 0.00 %
      Twisted General : 0.76 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -1.28 (0.68), residues: 137
    helix:  0.68 (0.65), residues: 59
    sheet:  None (None), residues: 0
    loop : -2.20 (0.65), residues: 78
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.005   0.001   HIS A 139 
   PHE   0.076   0.017   PHE A  67 
   TYR   0.164   0.025   TYR A  68 
   ARG   0.016   0.004   ARG A  21 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.005   0.001   HIS A 139 
   PHE   0.047   0.015   PHE A  67 
   TYR   0.132   0.024   TYR A  68 
   ARG   0.009   0.002   ARG A  21 

                     ----------Asn/Gln/His flips----------                     

  No backwards Asn/Gln/His sidechains found.

=================================== Summary ===================================


End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000 (Z=  0.003)
  Max. delta:    0.047 (Z=  3.632)
  Mean delta:    0.016 (Z=  0.848)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  47  ASP  CA
   A  47  ASP  CB
   A  47  ASP  CG        112.60   103.04     9.56  1.00e+00  9.14e+01   9.6*sigma
   A  51  ILE  CA
   A  51  ILE  C
   A  52  PRO  N         116.90   126.16    -9.26  1.50e+00  3.81e+01   6.2*sigma
   A  43  HIS  CB
   A  43  HIS  CG
   A  43  HIS  ND1       122.70   113.79     8.91  1.50e+00  3.52e+01   5.9*sigma
   A 116  ASP  CA
   A 116  ASP  C
   A 117  PRO  N         116.90   124.95    -8.05  1.50e+00  2.88e+01   5.4*sigma
   A  43  HIS  ND1
   A  43  HIS  CG
   A  43  HIS  CD2       106.10   111.21    -5.11  1.00e+00  2.61e+01   5.1*sigma
   A 118  ASP  CA
   A 118  ASP  CB
   A 118  ASP  CG        112.60   117.69    -5.09  1.00e+00  2.59e+01   5.1*sigma
   A 138  HIS  ND1
   A 138  HIS  CG
   A 138  HIS  CD2       106.10   110.78    -4.68  1.00e+00  2.19e+01   4.7*sigma
   A 115  ALA  N
   A 115  ALA  CA
   A 115  ALA  CB        110.40   117.37    -6.97  1.50e+00  2.16e+01   4.6*sigma
   A  53  LEU  CA
   A  53  LEU  C
   A  54  PRO  N         116.90   123.81    -6.91  1.50e+00  2.12e+01   4.6*sigma
   A  72  ASN  N
   A  72  ASN  CA
   A  72  ASN  CB        110.50   118.14    -7.64  1.70e+00  2.02e+01   4.5*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.57    -4.47  1.00e+00  2.00e+01   4.5*sigma
   A 101  LYS  CA
   A 101  LYS  C
   A 102  PRO  N         116.90   123.46    -6.56  1.50e+00  1.91e+01   4.4*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.40    -4.30  1.00e+00  1.85e+01   4.3*sigma
   A 134  HIS  ND1
   A 134  HIS  CG
   A 134  HIS  CD2       106.10   110.39    -4.29  1.00e+00  1.84e+01   4.3*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   110.38    -4.28  1.00e+00  1.84e+01   4.3*sigma
   A  21  ARG  CA
   A  21  ARG  C
   A  22  PRO  N         116.90   123.25    -6.35  1.50e+00  1.79e+01   4.2*sigma
   A  44  ASP  CA
   A  44  ASP  CB
   A  44  ASP  CG        112.60   108.39     4.21  1.00e+00  1.77e+01   4.2*sigma
   A 116  ASP  O
   A 116  ASP  C
   A 117  PRO  N         123.00   116.27     6.73  1.60e+00  1.77e+01   4.2*sigma
   A  72  ASN  CA
   A  72  ASN  CB
   A  72  ASN  CG        112.60   108.42     4.18  1.00e+00  1.75e+01   4.2*sigma
   A 136  HIS  ND1
   A 136  HIS  CG
   A 136  HIS  CD2       106.10   110.24    -4.14  1.00e+00  1.71e+01   4.1*sigma
   A 139  HIS  ND1
   A 139  HIS  CE1
   A 139  HIS  NE2       108.40   112.42    -4.02  1.00e+00  1.62e+01   4.0*sigma
   A  78  ILE  N
   A  78  ILE  CA
   A  78  ILE  CB        111.50   118.31    -6.81  1.70e+00  1.61e+01   4.0*sigma

  Min. delta:    0.001 (Z=  0.001)
  Max. delta:    9.560 (Z=  9.560)
  Mean delta:    2.277 (Z=  1.308)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 119  LEU  CA
   A 119  LEU  C
   A 120  GLU  N
   A 120  GLU  CA        180.00   149.99    30.01  5.00e+00  3.60e+01   6.0*sigma
   A 116  ASP  CA
   A 116  ASP  C
   A 117  PRO  N
   A 117  PRO  CA        180.00   157.87    22.13  5.00e+00  1.96e+01   4.4*sigma

  Min. delta:    0.009
  Max. delta:   60.458
  Mean delta:    9.936

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.606
  Mean delta:    0.123

                       ----------Planar groups----------                       

  atoms                 rms_deltas   delta_max    residual   deviation
   A  43  HIS  CB
   A  43  HIS  CG
   A  43  HIS  ND1
   A  43  HIS  CD2
   A  43  HIS  CE1
   A  43  HIS  NE2           0.130       0.180      252.49   9.0*sigma
   A  91  TYR  CB
   A  91  TYR  CG
   A  91  TYR  CD1
   A  91  TYR  CD2
   A  91  TYR  CE1
   A  91  TYR  CE2
   A  91  TYR  CZ
   A  91  TYR  OH            0.056       0.091       62.37   4.6*sigma

  Min. delta:    0.000
  Max. delta:    0.130
  Mean delta:    0.019

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

                       ----------Angle outliers----------                      

   A  78  ILE  HA , Angle CB-CA-HA, observed: 96.953, delta from target: 12.047

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.011   0.047   2241  Z= 0.603
    Angle     :  2.029  12.047   4077  Z= 0.941
    Chirality :  0.123   0.606    176
    Planarity :  0.015   0.123    326
    Dihedral  :  9.667  81.269    768
    Min Nonbonded Distance : 1.731
  
  Molprobity Statistics.
    All-atom Clashscore : 1.80
    Ramachandran Plot:
      Outliers :  2.92 %
      Allowed  :  7.30 %
      Favored  : 89.78 %
    Rotamer:
      Outliers :  0.00 %
      Allowed  :  1.61 %
      Favored  : 98.39 %
    Cbeta Deviations :  3.79 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.00 %
      Twisted Proline : 0.00 %
      Twisted General : 0.76 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole:  0.42 (0.69), residues: 137
    helix:  1.86 (0.63), residues: 59
    sheet:  None (None), residues: 0
    loop : -1.03 (0.68), residues: 78
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.013   0.003   HIS A  43 
   PHE   0.095   0.019   PHE A  45 
   TYR   0.151   0.039   TYR A 111 
   ARG   0.069   0.015   ARG A  21 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.013   0.003   HIS A  43 
   PHE   0.063   0.018   PHE A  45 
   TYR   0.091   0.035   TYR A  91 
   ARG   0.041   0.007   ARG A  21 

                     ----------Asn/Gln/His flips----------                     

  No backwards Asn/Gln/His sidechains found.

=================================== Summary ===================================

Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  

  Ramachandran outliers =   4.38 %
                favored =  83.94 %
  Rotamer outliers      =   0.00 %
  C-beta deviations     =     5
  Clashscore            =   4.51
  RMS(bonds)            =   0.0108
  RMS(angles)           =   1.98
  MolProbity score      =   1.91

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py
  Ramachandran outliers =   4.38 %
                favored =  86.86 %
  Rotamer outliers      =   0.81 %
  C-beta deviations     =     2
  Clashscore            =   4.06
  RMS(bonds)            =   0.0112
  RMS(angles)           =   2.07
  MolProbity score      =   1.81

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py

End of input processing

=============================== Model properties ==============================

  Ramachandran outliers =   0.73 %
                favored =  83.21 %
  Rotamer outliers      =   0.81 %
  C-beta deviations     =     0
  Clashscore            =   4.06
  RMS(bonds)            =   0.0107
  RMS(angles)           =   1.88
  MolProbity score      =   1.88

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py
   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  atoms                 ideal   model   delta   sigma   slack  residual   deviation
   A 134  HIS  CE1
   A 134  HIS  NE2         1.32     1.36    -0.04  1.00e-02  1.79e+01   4.2*sigma
   A 137  HIS  CE1
   A 137  HIS  NE2         1.32     1.36    -0.04  1.00e-02  1.63e+01   4.0*sigma
   A 138  HIS  CE1
   A 138  HIS  NE2         1.32     1.36    -0.04  1.00e-02  1.62e+01   4.0*sigma

  Min. delta:    0.000 (Z=  0.002)
  Max. delta:    0.057 (Z=  4.236)
  Mean delta:    0.017 (Z=  0.914)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  30  ILE  CA
   A  30  ILE  CB
   A  30  ILE  CG1       110.40   122.83   -12.43  1.70e+00  5.35e+01   7.3*sigma
   A 114  PRO  N
   A 114  PRO  CA
   A 114  PRO  C         112.10   125.43   -13.33  2.50e+00  2.84e+01   5.3*sigma
   A 114  PRO  N
   A 114  PRO  CD
   A 114  PRO  CG        103.20   110.65    -7.45  1.50e+00  2.47e+01   5.0*sigma
   A 134  HIS  ND1
   A 134  HIS  CG
   A 134  HIS  CD2       106.10   110.82    -4.72  1.00e+00  2.23e+01   4.7*sigma
   A 113  LYS  C
   A 113  LYS  CA
   A 113  LYS  CB        110.10   118.79    -8.69  1.90e+00  2.09e+01   4.6*sigma
   A 134  HIS  CA
   A 134  HIS  CB
   A 134  HIS  CG        113.80   118.22    -4.42  1.00e+00  1.95e+01   4.4*sigma
   A  30  ILE  CA
   A  30  ILE  CB
   A  30  ILE  CG2       110.50   102.99     7.51  1.70e+00  1.95e+01   4.4*sigma
   A 136  HIS  CB
   A 136  HIS  CG
   A 136  HIS  ND1       122.70   116.34     6.36  1.50e+00  1.80e+01   4.2*sigma
   A 135  HIS  ND1
   A 135  HIS  CE1
   A 135  HIS  NE2       108.40   112.63    -4.23  1.00e+00  1.79e+01   4.2*sigma
   A 134  HIS  ND1
   A 134  HIS  CE1
   A 134  HIS  NE2       108.40   112.61    -4.21  1.00e+00  1.77e+01   4.2*sigma
   A  97  SER  C
   A  98  SER  N
   A  98  SER  CA        121.70   129.14    -7.44  1.80e+00  1.71e+01   4.1*sigma
   A 114  PRO  CA
   A 114  PRO  N
   A 114  PRO  CD        112.00   106.21     5.79  1.40e+00  1.71e+01   4.1*sigma
   A  21  ARG  CA
   A  21  ARG  C
   A  22  PRO  N         116.90   123.09    -6.19  1.50e+00  1.70e+01   4.1*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.22    -4.12  1.00e+00  1.70e+01   4.1*sigma
   A   2  LEU  CB
   A   2  LEU  CG
   A   2  LEU  CD1       110.70   122.99   -12.29  3.00e+00  1.68e+01   4.1*sigma
   A  14  VAL  CA
   A  14  VAL  CB
   A  14  VAL  CG1       110.40   117.34    -6.94  1.70e+00  1.67e+01   4.1*sigma
   A 138  HIS  ND1
   A 138  HIS  CG
   A 138  HIS  CD2       106.10   110.14    -4.04  1.00e+00  1.63e+01   4.0*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.14    -4.04  1.00e+00  1.63e+01   4.0*sigma
   A 138  HIS  ND1
   A 138  HIS  CE1
   A 138  HIS  NE2       108.40   112.40    -4.00  1.00e+00  1.60e+01   4.0*sigma

  Min. delta:    0.001 (Z=  0.001)
  Max. delta:   13.326 (Z=  7.312)
  Mean delta:    2.253 (Z=  1.233)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  91  TYR  CA
   A  91  TYR  C
   A  92  THR  N
   A  92  THR  CA        180.00   150.02    29.98  5.00e+00  3.60e+01   6.0*sigma
   A  87  GLY  CA
   A  87  GLY  C
   A  88  ASP  N
   A  88  ASP  CA        180.00   154.77    25.23  5.00e+00  2.55e+01   5.0*sigma
   A 117  PRO  CA
   A 117  PRO  C
   A 118  ASP  N
   A 118  ASP  CA        180.00   157.71    22.29  5.00e+00  1.99e+01   4.5*sigma
   A  92  THR  CA
   A  92  THR  C
   A  93  LEU  N
   A  93  LEU  CA        180.00   158.44    21.56  5.00e+00  1.86e+01   4.3*sigma

  Min. delta:    0.005
  Max. delta:   78.308
  Mean delta:    9.704

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.002
  Max. delta:    0.469
  Mean delta:    0.112

                       ----------Planar groups----------                       

  atoms                 rms_deltas   delta_max    residual   deviation
   A  50  TYR  CB
   A  50  TYR  CG
   A  50  TYR  CD1
   A  50  TYR  CD2
   A  50  TYR  CE1
   A  50  TYR  CE2
   A  50  TYR  CZ
   A  50  TYR  OH            0.045       0.085       41.34   4.3*sigma

  Min. delta:    0.000
  Max. delta:    0.096
  Mean delta:    0.013

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

                       ----------Angle outliers----------                      

   A 114  PRO  HA , Angle CB-CA-HA, observed: 121.751, delta from target: -12.751
   A 114  PRO  HA , Angle C-CA-HA, observed: 95.972, delta from target: 13.028
   A  30  ILE  HB , Angle CG1-CB-HB, observed: 95.678, delta from target: 13.322

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.012   0.057   2241  Z= 0.651
    Angle     :  2.043  13.326   4077  Z= 0.908
    Chirality :  0.112   0.469    176
    Planarity :  0.011   0.096    326
    Dihedral  :  8.481  78.308    768
    Min Nonbonded Distance : 1.722
  
  Molprobity Statistics.
    All-atom Clashscore : 7.67
    Ramachandran Plot:
      Outliers :  3.65 %
      Allowed  : 14.60 %
      Favored  : 81.75 %
    Rotamer:
      Outliers :  0.81 %
      Allowed  :  2.42 %
      Favored  : 96.77 %
    Cbeta Deviations :  1.52 %
    Peptide Plane:
      Cis-proline     : 14.29 %
      Cis-general     : 0.00 %
      Twisted Proline : 0.00 %
      Twisted General : 0.00 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole:  0.08 (0.71), residues: 137
    helix:  1.60 (0.56), residues: 65
    sheet:  None (None), residues: 0
    loop : -1.50 (0.77), residues: 72
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.002   0.001   HIS A  43 
   PHE   0.079   0.024   PHE A  15 
   TYR   0.101   0.022   TYR A  50 
   ARG   0.020   0.004   ARG A  58 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.002   0.001   HIS A  43 
   PHE   0.029   0.012   PHE A  15 
   TYR   0.085   0.021   TYR A  50 
   ARG   0.009   0.002   ARG A  58 

                     ----------Asn/Gln/His flips----------                     

  No backwards Asn/Gln/His sidechains found.

=================================== Summary ===================================

  Ramachandran outliers =   5.11 %
                favored =  88.32 %
  Rotamer outliers      =   0.81 %
  C-beta deviations     =     2
  Clashscore            =   4.51
  RMS(bonds)            =   0.0113
  RMS(angles)           =   2.05
  MolProbity score      =   1.82

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py
  Ramachandran outliers =   6.57 %
                favored =  80.29 %
  Rotamer outliers      =   0.81 %
  C-beta deviations     =     3
  Clashscore            =   3.61
  RMS(bonds)            =   0.0116
  RMS(angles)           =   2.05
  MolProbity score      =   1.88

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py
  Ramachandran outliers =   2.92 %
                favored =  89.78 %
  Rotamer outliers      =   0.00 %
  C-beta deviations     =     5
  Clashscore            =   1.80
  RMS(bonds)            =   0.0113
  RMS(angles)           =   2.03
  MolProbity score      =   1.49

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py

End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  atoms                 ideal   model   delta   sigma   slack  residual   deviation
   A  83  THR  C
   A  84  GLU  N           1.33     1.43    -0.10  1.40e-02  5.27e+01   7.3*sigma
   A  84  GLU  C
   A  85  LYS  N           1.33     1.42    -0.09  1.40e-02  4.17e+01   6.5*sigma
   A  84  GLU  N
   A  84  GLU  CA          1.46     1.57    -0.12  1.90e-02  3.71e+01   6.1*sigma
   A  95  ASP  C
   A  96  GLY  N           1.33     1.39    -0.06  1.40e-02  1.78e+01   4.2*sigma

  Min. delta:    0.000 (Z=  0.000)
  Max. delta:    0.116 (Z=  7.260)
  Mean delta:    0.018 (Z=  0.961)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  95  ASP  CA
   A  95  ASP  CB
   A  95  ASP  CG        112.60   129.45   -16.85  1.00e+00  2.84e+02  16.9*sigma
   A  95  ASP  C
   A  95  ASP  CA
   A  95  ASP  CB        110.10   126.88   -16.78  1.90e+00  7.80e+01   8.8*sigma
   A  51  ILE  CA
   A  51  ILE  C
   A  52  PRO  N         116.90   128.43   -11.53  1.50e+00  5.91e+01   7.7*sigma
   A  83  THR  C
   A  84  GLU  N
   A  84  GLU  CA        121.70   134.83   -13.13  1.80e+00  5.32e+01   7.3*sigma
   A  83  THR  N
   A  83  THR  CA
   A  83  THR  CB        111.50    99.94    11.56  1.70e+00  4.62e+01   6.8*sigma
   A  83  THR  C
   A  83  THR  CA
   A  83  THR  CB        109.10   123.28   -14.18  2.20e+00  4.15e+01   6.4*sigma
   A  29  ASP  CA
   A  29  ASP  CB
   A  29  ASP  CG        112.60   118.97    -6.37  1.00e+00  4.05e+01   6.4*sigma
   A  83  THR  CA
   A  83  THR  CB
   A  83  THR  OG1       109.60   118.94    -9.34  1.50e+00  3.88e+01   6.2*sigma
   A  94  GLY  C
   A  95  ASP  N
   A  95  ASP  CA        121.70   132.88   -11.18  1.80e+00  3.86e+01   6.2*sigma
   A  95  ASP  O
   A  95  ASP  C
   A  96  GLY  N         123.00   113.11     9.89  1.60e+00  3.82e+01   6.2*sigma
   A  95  ASP  CA
   A  95  ASP  C
   A  96  GLY  N         116.20   128.55   -12.35  2.00e+00  3.82e+01   6.2*sigma
   A  97  SER  N
   A  97  SER  CA
   A  97  SER  CB        110.50   120.34    -9.84  1.70e+00  3.35e+01   5.8*sigma
   A  84  GLU  C
   A  85  LYS  N
   A  85  LYS  CA        121.70   131.17    -9.47  1.80e+00  2.77e+01   5.3*sigma
   A  96  GLY  C
   A  97  SER  N
   A  97  SER  CA        121.70   129.72    -8.02  1.80e+00  1.98e+01   4.5*sigma
   A  83  THR  CA
   A  83  THR  C
   A  83  THR  O         120.80   113.34     7.46  1.70e+00  1.93e+01   4.4*sigma
   A  98  SER  N
   A  98  SER  CA
   A  98  SER  CB        110.50   117.82    -7.32  1.70e+00  1.86e+01   4.3*sigma
   A  51  ILE  O
   A  51  ILE  C
   A  52  PRO  N         123.00   116.30     6.70  1.60e+00  1.75e+01   4.2*sigma
   A 103  ASP  CA
   A 103  ASP  CB
   A 103  ASP  CG        112.60   116.72    -4.12  1.00e+00  1.70e+01   4.1*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.22    -4.12  1.00e+00  1.70e+01   4.1*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.19    -4.09  1.00e+00  1.68e+01   4.1*sigma
   A  81  TYR  C
   A  82  THR  N
   A  82  THR  CA        121.70   129.04    -7.34  1.80e+00  1.66e+01   4.1*sigma
   A  95  ASP  N
   A  95  ASP  CA
   A  95  ASP  CB        110.50   103.62     6.88  1.70e+00  1.64e+01   4.0*sigma
   A 134  HIS  ND1
   A 134  HIS  CG
   A 134  HIS  CD2       106.10   110.12    -4.02  1.00e+00  1.62e+01   4.0*sigma

  Min. delta:    0.003 (Z=  0.001)
  Max. delta:   16.851 (Z= 16.851)
  Mean delta:    2.445 (Z=  1.397)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  75  GLU  CA
   A  75  GLU  C
   A  76  SER  N
   A  76  SER  CA        180.00   136.03    43.97  5.00e+00  7.73e+01   8.8*sigma
   A  83  THR  CA
   A  83  THR  C
   A  84  GLU  N
   A  84  GLU  CA        180.00   138.94    41.06  5.00e+00  6.74e+01   8.2*sigma
   A 118  ASP  CA
   A 118  ASP  C
   A 119  LEU  N
   A 119  LEU  CA        180.00   151.78    28.22  5.00e+00  3.19e+01   5.6*sigma
   A 115  ALA  CA
   A 115  ALA  C
   A 116  ASP  N
   A 116  ASP  CA        180.00   156.60    23.40  5.00e+00  2.19e+01   4.7*sigma
   A 132  LEU  CA
   A 132  LEU  C
   A 133  GLU  N
   A 133  GLU  CA        180.00   158.34    21.66  5.00e+00  1.88e+01   4.3*sigma
   A  84  GLU  CA
   A  84  GLU  C
   A  85  LYS  N
   A  85  LYS  CA        180.00  -158.50   -21.50  5.00e+00  1.85e+01   4.3*sigma
   A  82  THR  CA
   A  82  THR  C
   A  83  THR  N
   A  83  THR  CA        180.00   159.68    20.32  5.00e+00  1.65e+01   4.1*sigma

  Min. delta:    0.024
  Max. delta:   78.027
  Mean delta:   12.458

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.452
  Mean delta:    0.106

                       ----------Planar groups----------                       

  atoms                 rms_deltas   delta_max    residual   deviation
   A  81  TYR  CB
   A  81  TYR  CG
   A  81  TYR  CD1
   A  81  TYR  CD2
   A  81  TYR  CE1
   A  81  TYR  CE2
   A  81  TYR  CZ
   A  81  TYR  OH            0.054       0.104       59.33   5.2*sigma

  Min. delta:    0.000
  Max. delta:    0.114
  Mean delta:    0.016

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

                       ----------Angle outliers----------                      

   A  95  ASP  HA , Angle N-CA-HA, observed: 122.150, delta from target: -12.150
   A  84  GLU  HA , Angle N-CA-HA, observed: 97.558, delta from target: 12.442
   A  95  ASP  HA , Angle C-CA-HA, observed: 95.063, delta from target: 13.937
   A  83  THR  HA , Angle N-CA-HA, observed: 124.143, delta from target: -14.143
   A  97  SER  HA , Angle N-CA-HA, observed: 88.556, delta from target: 21.444

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.013   0.116   2241  Z= 0.684
    Angle     :  2.153  21.444   4077  Z= 1.000
    Chirality :  0.106   0.452    176
    Planarity :  0.011   0.088    326
    Dihedral  : 11.137  78.027    768
    Min Nonbonded Distance : 1.607
  
  Molprobity Statistics.
    All-atom Clashscore : 4.06
    Ramachandran Plot:
      Outliers :  4.38 %
      Allowed  : 10.22 %
      Favored  : 85.40 %
    Rotamer:
      Outliers :  0.00 %
      Allowed  :  1.61 %
      Favored  : 98.39 %
    Cbeta Deviations :  3.03 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.00 %
      Twisted Proline : 0.00 %
      Twisted General : 1.53 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -1.04 (0.68), residues: 137
    helix:  1.71 (0.58), residues: 59
    sheet:  None (None), residues: 0
    loop : -2.84 (0.65), residues: 78
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.004   0.001   HIS A 138 
   PHE   0.015   0.004   PHE A  45 
   TYR   0.114   0.018   TYR A  81 
   ARG   0.091   0.012   ARG A  21 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.004   0.001   HIS A 138 
   PHE   0.013   0.005   PHE A  67 
   TYR   0.104   0.020   TYR A  81 
   ARG   0.004   0.001   ARG A  58 

                     ----------Asn/Gln/His flips----------                     

   A  72  ASN

=================================== Summary ===================================


============================== Collecting inputs ==============================


End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000 (Z=  0.001)
  Max. delta:    0.057 (Z=  3.157)
  Mean delta:    0.015 (Z=  0.783)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  51  ILE  CA
   A  51  ILE  C
   A  52  PRO  N         116.90   127.00   -10.10  1.50e+00  4.54e+01   6.7*sigma
   A  78  ILE  CA
   A  78  ILE  CB
   A  78  ILE  CG1       110.40   119.66    -9.26  1.70e+00  2.96e+01   5.4*sigma
   A 113  LYS  CA
   A 113  LYS  C
   A 114  PRO  N         116.90   124.77    -7.87  1.50e+00  2.75e+01   5.2*sigma
   A  95  ASP  CA
   A  95  ASP  CB
   A  95  ASP  CG        112.60   117.82    -5.22  1.00e+00  2.72e+01   5.2*sigma
   A  88  ASP  CA
   A  88  ASP  CB
   A  88  ASP  CG        112.60   107.47     5.13  1.00e+00  2.63e+01   5.1*sigma
   A  45  PHE  CA
   A  45  PHE  CB
   A  45  PHE  CG        113.80   118.70    -4.90  1.00e+00  2.40e+01   4.9*sigma
   A  88  ASP  C
   A  88  ASP  CA
   A  88  ASP  CB        110.10   119.08    -8.98  1.90e+00  2.23e+01   4.7*sigma
   A  49  GLU  C
   A  50  TYR  N
   A  50  TYR  CA        121.70   130.16    -8.46  1.80e+00  2.21e+01   4.7*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.68    -4.58  1.00e+00  2.10e+01   4.6*sigma
   A  43  HIS  ND1
   A  43  HIS  CG
   A  43  HIS  CD2       106.10   110.61    -4.51  1.00e+00  2.03e+01   4.5*sigma
   A 134  HIS  ND1
   A 134  HIS  CG
   A 134  HIS  CD2       106.10   110.59    -4.49  1.00e+00  2.02e+01   4.5*sigma
   A  61  LEU  CD1
   A  61  LEU  CG
   A  61  LEU  CD2       110.80   101.00     9.80  2.20e+00  1.98e+01   4.5*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.47    -4.37  1.00e+00  1.91e+01   4.4*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   110.47    -4.37  1.00e+00  1.91e+01   4.4*sigma
   A 136  HIS  ND1
   A 136  HIS  CG
   A 136  HIS  CD2       106.10   110.42    -4.32  1.00e+00  1.87e+01   4.3*sigma
   A  78  ILE  CA
   A  78  ILE  CB
   A  78  ILE  CG2       110.50   103.15     7.35  1.70e+00  1.87e+01   4.3*sigma
   A 138  HIS  ND1
   A 138  HIS  CG
   A 138  HIS  CD2       106.10   110.40    -4.30  1.00e+00  1.85e+01   4.3*sigma
   A  47  ASP  C
   A  48  ALA  N
   A  48  ALA  CA        121.70   129.43    -7.73  1.80e+00  1.84e+01   4.3*sigma
   A  48  ALA  C
   A  49  GLU  N
   A  49  GLU  CA        121.70   129.15    -7.45  1.80e+00  1.71e+01   4.1*sigma

  Min. delta:    0.000 (Z=  0.000)
  Max. delta:   10.103 (Z=  6.736)
  Mean delta:    2.145 (Z=  1.217)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  95  ASP  CA
   A  95  ASP  C
   A  96  GLY  N
   A  96  GLY  CA        180.00   157.46    22.54  5.00e+00  2.03e+01   4.5*sigma

  Min. delta:    0.010
  Max. delta:   66.761
  Mean delta:   10.193

                       ----------Chiral volumes----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  88  ASP  CA
   A  88  ASP  N
   A  88  ASP  C
   A  88  ASP  CB          2.51     1.45     1.07  2.00e-01  2.84e+01   5.3*sigma

  Min. delta:    0.000
  Max. delta:    1.065
  Mean delta:    0.133

                       ----------Planar groups----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.051
  Mean delta:    0.012

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

                       ----------Angle outliers----------                      

   A  78  ILE  HB , Angle CG2-CB-HB, observed: 121.059, delta from target: -12.059
   A  88  ASP  HA , Angle C-CA-HA, observed: 96.454, delta from target: 12.546
   A  49  GLU  HA , Angle N-CA-HA, observed: 97.193, delta from target: 12.807

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.011   0.057   2241  Z= 0.557
    Angle     :  1.933  12.807   4077  Z= 0.884
    Chirality :  0.133   1.065    176
    Planarity :  0.009   0.051    326
    Dihedral  :  9.012  66.761    768
    Min Nonbonded Distance : 1.658
  
  Molprobity Statistics.
    All-atom Clashscore : 4.96
    Ramachandran Plot:
      Outliers :  3.65 %
      Allowed  :  8.76 %
      Favored  : 87.59 %
    Rotamer:
      Outliers :  0.81 %
      Allowed  :  1.61 %
      Favored  : 97.58 %
    Cbeta Deviations :  2.27 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.00 %
      Twisted Proline : 0.00 %
      Twisted General : 0.00 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -0.36 (0.68), residues: 137
    helix:  1.90 (0.57), residues: 69
    sheet: -0.36 (1.53), residues: 10
    loop : -3.11 (0.66), residues: 58
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.005   0.001   HIS A 139 
   PHE   0.049   0.014   PHE A  45 
   TYR   0.095   0.017   TYR A  81 
   ARG   0.022   0.006   ARG A  58 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.005   0.001   HIS A 139 
   PHE   0.041   0.010   PHE A  45 
   TYR   0.078   0.018   TYR A  81 
   ARG   0.006   0.002   ARG A 127 

                     ----------Asn/Gln/His flips----------                     

  No backwards Asn/Gln/His sidechains found.

=================================== Summary ===================================


End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000 (Z=  0.000)
  Max. delta:    0.046 (Z=  3.467)
  Mean delta:    0.015 (Z=  0.791)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  23  ASP  CA
   A  23  ASP  CB
   A  23  ASP  CG        112.60   107.59     5.01  1.00e+00  2.51e+01   5.0*sigma
   A 113  LYS  CA
   A 113  LYS  C
   A 114  PRO  N         116.90   123.89    -6.99  1.50e+00  2.17e+01   4.7*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.42    -4.32  1.00e+00  1.87e+01   4.3*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.39    -4.29  1.00e+00  1.84e+01   4.3*sigma
   A  45  PHE  CA
   A  45  PHE  CB
   A  45  PHE  CG        113.80   118.06    -4.26  1.00e+00  1.81e+01   4.3*sigma
   A 136  HIS  ND1
   A 136  HIS  CG
   A 136  HIS  CD2       106.10   110.34    -4.24  1.00e+00  1.80e+01   4.2*sigma
   A 134  HIS  ND1
   A 134  HIS  CG
   A 134  HIS  CD2       106.10   110.30    -4.20  1.00e+00  1.76e+01   4.2*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   110.24    -4.14  1.00e+00  1.72e+01   4.1*sigma
   A  21  ARG  CA
   A  21  ARG  C
   A  22  PRO  N         116.90   123.09    -6.19  1.50e+00  1.70e+01   4.1*sigma

  Min. delta:    0.001 (Z=  0.001)
  Max. delta:    9.155 (Z=  5.014)
  Mean delta:    2.151 (Z=  1.197)

                      ----------Dihedral angles----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:   86.031
  Mean delta:   11.745

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.448
  Mean delta:    0.119

                       ----------Planar groups----------                       

  atoms                 rms_deltas   delta_max    residual   deviation
   A  89  TYR  CB
   A  89  TYR  CG
   A  89  TYR  CD1
   A  89  TYR  CD2
   A  89  TYR  CE1
   A  89  TYR  CE2
   A  89  TYR  CZ
   A  89  TYR  OH            0.099       0.194      195.65   9.7*sigma
   A 105  TYR  CB
   A 105  TYR  CG
   A 105  TYR  CD1
   A 105  TYR  CD2
   A 105  TYR  CE1
   A 105  TYR  CE2
   A 105  TYR  CZ
   A 105  TYR  OH            0.052       0.101       53.06   5.1*sigma
   A 111  TYR  CB
   A 111  TYR  CG
   A 111  TYR  CD1
   A 111  TYR  CD2
   A 111  TYR  CE1
   A 111  TYR  CE2
   A 111  TYR  CZ
   A 111  TYR  OH            0.055       0.097       61.07   4.8*sigma

  Min. delta:    0.000
  Max. delta:    0.099
  Mean delta:    0.016

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

                       ----------Angle outliers----------                      

   A  98  SER  HA , Angle N-CA-HA, observed: 97.051, delta from target: 12.949

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.011   0.046   2241  Z= 0.563
    Angle     :  1.947  12.949   4077  Z= 0.876
    Chirality :  0.119   0.448    176
    Planarity :  0.012   0.101    326
    Dihedral  : 10.651  86.031    768
    Min Nonbonded Distance : 1.764
  
  Molprobity Statistics.
    All-atom Clashscore : 6.31
    Ramachandran Plot:
      Outliers :  4.38 %
      Allowed  :  8.76 %
      Favored  : 86.86 %
    Rotamer:
      Outliers :  0.81 %
      Allowed  :  1.61 %
      Favored  : 97.58 %
    Cbeta Deviations :  2.27 %
    Peptide Plane:
      Cis-proline     : 14.29 %
      Cis-general     : 0.00 %
      Twisted Proline : 0.00 %
      Twisted General : 0.00 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -0.62 (0.70), residues: 137
    helix:  1.77 (0.63), residues: 57
    sheet:  None (None), residues: 0
    loop : -2.22 (0.66), residues: 80
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.006   0.002   HIS A 139 
   PHE   0.128   0.031   PHE A  45 
   TYR   0.256   0.029   TYR A  89 
   ARG   0.053   0.012   ARG A  21 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.006   0.002   HIS A 139 
   PHE   0.088   0.029   PHE A  45 
   TYR   0.194   0.033   TYR A  89 
   ARG   0.019   0.004   ARG A  58 

                     ----------Asn/Gln/His flips----------                     

   A  66  GLN

=================================== Summary ===================================

  Ramachandran outliers =   3.65 %
                favored =  81.75 %
  Rotamer outliers      =   0.81 %
  C-beta deviations     =     2
  Clashscore            =   7.67
  RMS(bonds)            =   0.0120
  RMS(angles)           =   2.04
  MolProbity score      =   2.13

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py

End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000 (Z=  0.004)
  Max. delta:    0.067 (Z=  3.344)
  Mean delta:    0.016 (Z=  0.835)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  97  SER  C
   A  97  SER  CA
   A  97  SER  CB        110.10   121.24   -11.14  1.90e+00  3.44e+01   5.9*sigma
   A  75  GLU  C
   A  76  SER  N
   A  76  SER  CA        121.70   132.03   -10.33  1.80e+00  3.29e+01   5.7*sigma
   A 116  ASP  CA
   A 116  ASP  C
   A 117  PRO  N         116.90   124.36    -7.46  1.50e+00  2.48e+01   5.0*sigma
   A  93  LEU  C
   A  93  LEU  CA
   A  93  LEU  CB        110.10   119.17    -9.07  1.90e+00  2.28e+01   4.8*sigma
   A  43  HIS  ND1
   A  43  HIS  CG
   A  43  HIS  CD2       106.10   110.85    -4.75  1.00e+00  2.26e+01   4.8*sigma
   A  74  ASP  C
   A  75  GLU  N
   A  75  GLU  CA        121.70   130.00    -8.30  1.80e+00  2.13e+01   4.6*sigma
   A  29  ASP  CA
   A  29  ASP  CB
   A  29  ASP  CG        112.60   117.09    -4.49  1.00e+00  2.02e+01   4.5*sigma
   A 134  HIS  ND1
   A 134  HIS  CG
   A 134  HIS  CD2       106.10   110.50    -4.40  1.00e+00  1.93e+01   4.4*sigma
   A 136  HIS  ND1
   A 136  HIS  CG
   A 136  HIS  CD2       106.10   110.40    -4.30  1.00e+00  1.84e+01   4.3*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.33    -4.23  1.00e+00  1.79e+01   4.2*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.25    -4.15  1.00e+00  1.72e+01   4.2*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   110.25    -4.15  1.00e+00  1.72e+01   4.1*sigma
   A  94  GLY  O
   A  94  GLY  C
   A  95  ASP  N         123.00   116.37     6.63  1.60e+00  1.72e+01   4.1*sigma
   A 138  HIS  ND1
   A 138  HIS  CG
   A 138  HIS  CD2       106.10   110.12    -4.02  1.00e+00  1.62e+01   4.0*sigma

  Min. delta:    0.000 (Z=  0.000)
  Max. delta:   11.139 (Z=  5.863)
  Mean delta:    2.194 (Z=  1.199)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 117  PRO  CA
   A 117  PRO  C
   A 118  ASP  N
   A 118  ASP  CA        180.00   149.10    30.90  5.00e+00  3.82e+01   6.2*sigma
   A 116  ASP  CA
   A 116  ASP  C
   A 117  PRO  N
   A 117  PRO  CA        180.00   153.35    26.65  5.00e+00  2.84e+01   5.3*sigma
   A  78  ILE  CA
   A  78  ILE  C
   A  79  LYS  N
   A  79  LYS  CA        180.00   153.89    26.11  5.00e+00  2.73e+01   5.2*sigma
   A  79  LYS  CA
   A  79  LYS  C
   A  80  GLY  N
   A  80  GLY  CA        180.00   157.25    22.75  5.00e+00  2.07e+01   4.5*sigma
   A  81  TYR  CD1
   A  81  TYR  CE1
   A  81  TYR  CZ
   A  81  TYR  OH        180.00  -157.69   -22.31  5.00e+00  1.99e+01   4.5*sigma

  Min. delta:    0.013
  Max. delta:   87.253
  Mean delta:   10.960

                       ----------Chiral volumes----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  97  SER  CA
   A  97  SER  N
   A  97  SER  C
   A  97  SER  CB          2.51     1.59     0.92  2.00e-01  2.10e+01   4.6*sigma

  Min. delta:    0.000
  Max. delta:    0.918
  Mean delta:    0.119

                       ----------Planar groups----------                       

  atoms                 rms_deltas   delta_max    residual   deviation
   A  81  TYR  CB
   A  81  TYR  CG
   A  81  TYR  CD1
   A  81  TYR  CD2
   A  81  TYR  CE1
   A  81  TYR  CE2
   A  81  TYR  CZ
   A  81  TYR  OH            0.148       0.175      438.84   8.7*sigma
   A  12  TYR  CB
   A  12  TYR  CG
   A  12  TYR  CD1
   A  12  TYR  CD2
   A  12  TYR  CE1
   A  12  TYR  CE2
   A  12  TYR  CZ
   A  12  TYR  OH            0.089       0.154      159.88   7.7*sigma

  Min. delta:    0.000
  Max. delta:    0.148
  Mean delta:    0.019

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

                       ----------Angle outliers----------                      

   A  97  SER  HA , Angle CB-CA-HA, observed: 95.865, delta from target: 13.135

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.011   0.067   2241  Z= 0.595
    Angle     :  1.972  13.135   4077  Z= 0.879
    Chirality :  0.119   0.918    176
    Planarity :  0.017   0.217    326
    Dihedral  : 10.284  87.253    768
    Min Nonbonded Distance : 1.750
  
  Molprobity Statistics.
    All-atom Clashscore : 4.96
    Ramachandran Plot:
      Outliers :  5.84 %
      Allowed  : 14.60 %
      Favored  : 79.56 %
    Rotamer:
      Outliers :  0.00 %
      Allowed  :  0.00 %
      Favored  : 100.00 %
    Cbeta Deviations :  1.52 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.00 %
      Twisted Proline : 0.00 %
      Twisted General : 0.76 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -1.40 (0.73), residues: 137
    helix:  1.29 (0.69), residues: 55
    sheet:  None (None), residues: 0
    loop : -2.73 (0.67), residues: 82
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.005   0.001   HIS A 139 
   PHE   0.089   0.022   PHE A  67 
   TYR   0.435   0.045   TYR A  81 
   ARG   0.079   0.012   ARG A  21 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.005   0.001   HIS A 139 
   PHE   0.062   0.023   PHE A  67 
   TYR   0.207   0.039   TYR A  81 
   ARG   0.013   0.003   ARG A  21 

                     ----------Asn/Gln/His flips----------                     

   A 100  GLN
   A  66  GLN

=================================== Summary ===================================


End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  atoms                 ideal   model   delta   sigma   slack  residual   deviation
   A  96  GLY  CA
   A  96  GLY  C           1.52     1.44     0.07  1.80e-02  1.60e+01   4.0*sigma

  Min. delta:    0.000 (Z=  0.000)
  Max. delta:    0.072 (Z=  4.004)
  Mean delta:    0.017 (Z=  0.886)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 113  LYS  CA
   A 113  LYS  C
   A 114  PRO  N         116.90   124.86    -7.96  1.50e+00  2.81e+01   5.3*sigma
   A  95  ASP  CA
   A  95  ASP  CB
   A  95  ASP  CG        112.60   117.87    -5.27  1.00e+00  2.78e+01   5.3*sigma
   A 116  ASP  CA
   A 116  ASP  C
   A 117  PRO  N         116.90   124.60    -7.70  1.50e+00  2.63e+01   5.1*sigma
   A  53  LEU  CA
   A  53  LEU  C
   A  54  PRO  N         116.90   124.54    -7.64  1.50e+00  2.59e+01   5.1*sigma
   A 136  HIS  ND1
   A 136  HIS  CG
   A 136  HIS  CD2       106.10   110.77    -4.67  1.00e+00  2.18e+01   4.7*sigma
   A 101  LYS  CA
   A 101  LYS  C
   A 102  PRO  N         116.90   123.83    -6.93  1.50e+00  2.14e+01   4.6*sigma
   A 134  HIS  ND1
   A 134  HIS  CG
   A 134  HIS  CD2       106.10   110.60    -4.50  1.00e+00  2.02e+01   4.5*sigma
   A  43  HIS  ND1
   A  43  HIS  CG
   A  43  HIS  CD2       106.10   110.54    -4.44  1.00e+00  1.97e+01   4.4*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.52    -4.42  1.00e+00  1.95e+01   4.4*sigma
   A 138  HIS  ND1
   A 138  HIS  CG
   A 138  HIS  CD2       106.10   110.48    -4.38  1.00e+00  1.92e+01   4.4*sigma
   A  88  ASP  CA
   A  88  ASP  CB
   A  88  ASP  CG        112.60   116.90    -4.30  1.00e+00  1.84e+01   4.3*sigma
   A  77  ILE  N
   A  77  ILE  CA
   A  77  ILE  CB        111.50   104.52     6.98  1.70e+00  1.69e+01   4.1*sigma
   A 115  ALA  N
   A 115  ALA  CA
   A 115  ALA  CB        110.40   116.55    -6.15  1.50e+00  1.68e+01   4.1*sigma
   A  61  LEU  CD1
   A  61  LEU  CG
   A  61  LEU  CD2       110.80   101.84     8.96  2.20e+00  1.66e+01   4.1*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.17    -4.07  1.00e+00  1.66e+01   4.1*sigma
   A  43  HIS  C
   A  43  HIS  CA
   A  43  HIS  CB        110.10   102.40     7.70  1.90e+00  1.64e+01   4.1*sigma

  Min. delta:    0.001 (Z=  0.001)
  Max. delta:    9.242 (Z=  5.305)
  Mean delta:    2.279 (Z=  1.264)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 136  HIS  CA
   A 136  HIS  C
   A 137  HIS  N
   A 137  HIS  CA        180.00   116.16    63.84  5.00e+00  1.63e+02  12.8*sigma
   A 135  HIS  CA
   A 135  HIS  C
   A 136  HIS  N
   A 136  HIS  CA        180.00   149.44    30.56  5.00e+00  3.74e+01   6.1*sigma
   A 122  ILE  CA
   A 122  ILE  C
   A 123  GLU  N
   A 123  GLU  CA        180.00   151.12    28.88  5.00e+00  3.34e+01   5.8*sigma
   A 119  LEU  CA
   A 119  LEU  C
   A 120  GLU  N
   A 120  GLU  CA        180.00   152.10    27.90  5.00e+00  3.11e+01   5.6*sigma
   A 120  GLU  CA
   A 120  GLU  C
   A 121  GLY  N
   A 121  GLY  CA        180.00   152.46    27.54  5.00e+00  3.03e+01   5.5*sigma
   A 115  ALA  CA
   A 115  ALA  C
   A 116  ASP  N
   A 116  ASP  CA        180.00   157.39    22.61  5.00e+00  2.04e+01   4.5*sigma
   A 116  ASP  CA
   A 116  ASP  C
   A 117  PRO  N
   A 117  PRO  CA        180.00   157.48    22.52  5.00e+00  2.03e+01   4.5*sigma
   A 138  HIS  CA
   A 138  HIS  C
   A 139  HIS  N
   A 139  HIS  CA        180.00   158.03    21.97  5.00e+00  1.93e+01   4.4*sigma
   A 134  HIS  CA
   A 134  HIS  C
   A 135  HIS  N
   A 135  HIS  CA        180.00   159.00    21.00  5.00e+00  1.76e+01   4.2*sigma
   A  93  LEU  CA
   A  93  LEU  C
   A  94  GLY  N
   A  94  GLY  CA        180.00   159.01    20.99  5.00e+00  1.76e+01   4.2*sigma
   A 117  PRO  CA
   A 117  PRO  C
   A 118  ASP  N
   A 118  ASP  CA        180.00   159.43    20.57  5.00e+00  1.69e+01   4.1*sigma
   A  92  THR  CA
   A  92  THR  C
   A  93  LEU  N
   A  93  LEU  CA        180.00   159.84    20.16  5.00e+00  1.63e+01   4.0*sigma

  Min. delta:    0.059
  Max. delta:   74.216
  Mean delta:   10.973

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.564
  Mean delta:    0.106

                       ----------Planar groups----------                       

  atoms                 rms_deltas   delta_max    residual   deviation
   A  68  TYR  CB
   A  68  TYR  CG
   A  68  TYR  CD1
   A  68  TYR  CD2
   A  68  TYR  CE1
   A  68  TYR  CE2
   A  68  TYR  CZ
   A  68  TYR  OH            0.081       0.139      131.95   6.9*sigma

  Min. delta:    0.000
  Max. delta:    0.081
  Mean delta:    0.014

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

                       ----------Angle outliers----------                      

   A  97  SER  HA , Angle N-CA-HA, observed: 95.910, delta from target: 14.090

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.012   0.072   2241  Z= 0.631
    Angle     :  2.014  14.090   4077  Z= 0.914
    Chirality :  0.106   0.564    176
    Planarity :  0.012   0.120    326
    Dihedral  :  9.779  74.216    768
    Min Nonbonded Distance : 1.551
  
  Molprobity Statistics.
    All-atom Clashscore : 3.16
    Ramachandran Plot:
      Outliers :  5.84 %
      Allowed  : 10.95 %
      Favored  : 83.21 %
    Rotamer:
      Outliers :  0.00 %
      Allowed  :  1.61 %
      Favored  : 98.39 %
    Cbeta Deviations :  0.76 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.00 %
      Twisted Proline : 0.00 %
      Twisted General : 1.53 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -1.32 (0.71), residues: 137
    helix:  1.57 (0.62), residues: 63
    sheet:  None (None), residues: 0
    loop : -3.35 (0.65), residues: 74
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.005   0.002   HIS A 139 
   PHE   0.022   0.007   PHE A  67 
   TYR   0.270   0.024   TYR A  68 
   ARG   0.047   0.007   ARG A  58 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.005   0.002   HIS A 139 
   PHE   0.021   0.006   PHE A  67 
   TYR   0.139   0.019   TYR A  68 
   ARG   0.001   0.000   ARG A 127 

                     ----------Asn/Gln/His flips----------                     

   A 135  HIS

=================================== Summary ===================================

  Ramachandran outliers =   4.38 %
                favored =  85.40 %
  Rotamer outliers      =   0.00 %
  C-beta deviations     =     4
  Clashscore            =   4.06
  RMS(bonds)            =   0.0128
  RMS(angles)           =   2.15
  MolProbity score      =   1.84

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py

End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000 (Z=  0.000)
  Max. delta:    0.051 (Z=  3.124)
  Mean delta:    0.016 (Z=  0.849)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 136  HIS  C
   A 137  HIS  N
   A 137  HIS  CA        121.70   133.54   -11.84  1.80e+00  4.33e+01   6.6*sigma
   A 114  PRO  N
   A 114  PRO  CA
   A 114  PRO  C         112.10   127.97   -15.87  2.50e+00  4.03e+01   6.3*sigma
   A 114  PRO  CA
   A 114  PRO  C
   A 115  ALA  N         116.20   128.26   -12.06  2.00e+00  3.64e+01   6.0*sigma
   A 136  HIS  CA
   A 136  HIS  CB
   A 136  HIS  CG        113.80   119.79    -5.99  1.00e+00  3.58e+01   6.0*sigma
   A 137  HIS  CA
   A 137  HIS  CB
   A 137  HIS  CG        113.80   119.04    -5.24  1.00e+00  2.75e+01   5.2*sigma
   A 134  HIS  C
   A 135  HIS  N
   A 135  HIS  CA        121.70   131.01    -9.31  1.80e+00  2.68e+01   5.2*sigma
   A 136  HIS  O
   A 136  HIS  C
   A 137  HIS  N         123.00   114.97     8.03  1.60e+00  2.52e+01   5.0*sigma
   A 134  HIS  O
   A 134  HIS  C
   A 135  HIS  N         123.00   115.11     7.89  1.60e+00  2.43e+01   4.9*sigma
   A  86  ILE  C
   A  87  GLY  N
   A  87  GLY  CA        121.70   130.44    -8.74  1.80e+00  2.36e+01   4.9*sigma
   A 136  HIS  CA
   A 136  HIS  C
   A 137  HIS  N         116.20   125.81    -9.61  2.00e+00  2.31e+01   4.8*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.85    -4.75  1.00e+00  2.26e+01   4.7*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   110.81    -4.71  1.00e+00  2.22e+01   4.7*sigma
   A 134  HIS  CA
   A 134  HIS  C
   A 135  HIS  N         116.20   125.62    -9.42  2.00e+00  2.22e+01   4.7*sigma
   A  86  ILE  CA
   A  86  ILE  CB
   A  86  ILE  CG2       110.50   118.45    -7.95  1.70e+00  2.19e+01   4.7*sigma
   A 138  HIS  ND1
   A 138  HIS  CG
   A 138  HIS  CD2       106.10   110.66    -4.56  1.00e+00  2.08e+01   4.6*sigma
   A 112  VAL  CA
   A 112  VAL  CB
   A 112  VAL  CG1       110.40   118.04    -7.64  1.70e+00  2.02e+01   4.5*sigma
   A  81  TYR  N
   A  81  TYR  CA
   A  81  TYR  C         111.00   123.52   -12.52  2.80e+00  2.00e+01   4.5*sigma
   A  43  HIS  ND1
   A  43  HIS  CG
   A  43  HIS  CD2       106.10   110.42    -4.32  1.00e+00  1.87e+01   4.3*sigma
   A 138  HIS  N
   A 138  HIS  CA
   A 138  HIS  CB        110.50   117.70    -7.20  1.70e+00  1.79e+01   4.2*sigma
   A 113  LYS  O
   A 113  LYS  C
   A 114  PRO  N         123.00   116.27     6.73  1.60e+00  1.77e+01   4.2*sigma
   A 136  HIS  ND1
   A 136  HIS  CG
   A 136  HIS  CD2       106.10   110.23    -4.13  1.00e+00  1.71e+01   4.1*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.21    -4.11  1.00e+00  1.69e+01   4.1*sigma
   A 134  HIS  ND1
   A 134  HIS  CG
   A 134  HIS  CD2       106.10   110.19    -4.09  1.00e+00  1.67e+01   4.1*sigma
   A  78  ILE  C
   A  79  LYS  N
   A  79  LYS  CA        121.70   129.05    -7.35  1.80e+00  1.67e+01   4.1*sigma
   A 135  HIS  CA
   A 135  HIS  CB
   A 135  HIS  CG        113.80   117.86    -4.06  1.00e+00  1.65e+01   4.1*sigma

  Min. delta:    0.001 (Z=  0.001)
  Max. delta:   15.873 (Z=  6.577)
  Mean delta:    2.353 (Z=  1.302)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 134  HIS  CA
   A 134  HIS  C
   A 135  HIS  N
   A 135  HIS  CA        180.00    45.85   134.15  5.00e+00  7.20e+02  26.8*sigma
   A 117  PRO  CA
   A 117  PRO  C
   A 118  ASP  N
   A 118  ASP  CA        180.00   135.52    44.48  5.00e+00  7.91e+01   8.9*sigma
   A 136  HIS  CA
   A 136  HIS  C
   A 137  HIS  N
   A 137  HIS  CA          0.00    38.63   -38.63  5.00e+00  5.97e+01   7.7*sigma
   A 130  SER  CA
   A 130  SER  C
   A 131  ILE  N
   A 131  ILE  CA        180.00   143.61    36.39  5.00e+00  5.30e+01   7.3*sigma
   A  80  GLY  CA
   A  80  GLY  C
   A  81  TYR  N
   A  81  TYR  CA        180.00   143.95    36.05  5.00e+00  5.20e+01   7.2*sigma
   A  73  GLY  CA
   A  73  GLY  C
   A  74  ASP  N
   A  74  ASP  CA        180.00   150.17    29.83  5.00e+00  3.56e+01   6.0*sigma
   A  94  GLY  CA
   A  94  GLY  C
   A  95  ASP  N
   A  95  ASP  CA        180.00   153.81    26.19  5.00e+00  2.74e+01   5.2*sigma
   A 138  HIS  CA
   A 138  HIS  C
   A 139  HIS  N
   A 139  HIS  CA        180.00   154.94    25.06  5.00e+00  2.51e+01   5.0*sigma
   A 116  ASP  CA
   A 116  ASP  C
   A 117  PRO  N
   A 117  PRO  CA        180.00  -158.35   -21.65  5.00e+00  1.87e+01   4.3*sigma
   A 113  LYS  CA
   A 113  LYS  C
   A 114  PRO  N
   A 114  PRO  CA        180.00  -158.83   -21.17  5.00e+00  1.79e+01   4.2*sigma
   A  93  LEU  CA
   A  93  LEU  C
   A  94  GLY  N
   A  94  GLY  CA        180.00   160.00    20.00  5.00e+00  1.60e+01   4.0*sigma

  Min. delta:    0.014
  Max. delta:  134.150
  Mean delta:   13.153

                       ----------Chiral volumes----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  81  TYR  CA
   A  81  TYR  N
   A  81  TYR  C
   A  81  TYR  CB          2.51     1.60     0.91  2.00e-01  2.07e+01   4.6*sigma

  Min. delta:    0.000
  Max. delta:    0.910
  Mean delta:    0.139

                       ----------Planar groups----------                       

  atoms                 rms_deltas   delta_max    residual   deviation
   A 135  HIS  CB
   A 135  HIS  CG
   A 135  HIS  ND1
   A 135  HIS  CD2
   A 135  HIS  CE1
   A 135  HIS  NE2           0.070       0.094       72.93   4.7*sigma
   A 113  LYS  C
   A 114  PRO  N
   A 114  PRO  CA
   A 114  PRO  CD            0.132       0.228       27.88   4.6*sigma
   A 137  HIS  CB
   A 137  HIS  CG
   A 137  HIS  ND1
   A 137  HIS  CD2
   A 137  HIS  CE1
   A 137  HIS  NE2           0.066       0.089       65.84   4.5*sigma

  Min. delta:    0.000
  Max. delta:    0.132
  Mean delta:    0.017

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

                       ----------Angle outliers----------                      

   A 114  PRO  HA , Angle CB-CA-HA, observed: 122.842, delta from target: -13.842
   A 138  HIS  HA , Angle N-CA-HA, observed: 95.122, delta from target: 14.878
   A 114  PRO  HA , Angle C-CA-HA, observed: 93.922, delta from target: 15.078
   A  81  TYR  HA , Angle N-CA-HA, observed: 89.833, delta from target: 20.167

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.011   0.051   2241  Z= 0.604
    Angle     :  2.097  20.167   4077  Z= 0.947
    Chirality :  0.139   0.910    176
    Planarity :  0.014   0.132    326
    Dihedral  : 11.760 134.150    768
    Min Nonbonded Distance : 1.503
  
  Molprobity Statistics.
    All-atom Clashscore : 4.06
    Ramachandran Plot:
      Outliers : 10.22 %
      Allowed  : 12.41 %
      Favored  : 77.37 %
    Rotamer:
      Outliers :  0.00 %
      Allowed  :  0.00 %
      Favored  : 100.00 %
    Cbeta Deviations :  4.55 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.00 %
      Twisted Proline : 0.00 %
      Twisted General : 3.82 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -1.48 (0.75), residues: 137
    helix:  1.32 (0.58), residues: 58
    sheet:  None (None), residues: 0
    loop : -3.01 (0.78), residues: 79
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.005   0.002   HIS A  43 
   PHE   0.089   0.019   PHE A  15 
   TYR   0.133   0.027   TYR A  81 
   ARG   0.023   0.008   ARG A  21 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.005   0.002   HIS A  43 
   PHE   0.034   0.011   PHE A  15 
   TYR   0.108   0.025   TYR A  81 
   ARG   0.013   0.004   ARG A  21 

                     ----------Asn/Gln/His flips----------                     

   A  43  HIS

=================================== Summary ===================================

  Ramachandran outliers =   3.65 %
                favored =  87.59 %
  Rotamer outliers      =   0.81 %
  C-beta deviations     =     3
  Clashscore            =   4.96
  RMS(bonds)            =   0.0108
  RMS(angles)           =   1.93
  MolProbity score      =   1.87

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py
  Ramachandran outliers =   4.38 %
                favored =  86.86 %
  Rotamer outliers      =   0.81 %
  C-beta deviations     =     3
  Clashscore            =   6.31
  RMS(bonds)            =   0.0107
  RMS(angles)           =   1.95
  MolProbity score      =   1.97

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py

End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000 (Z=  0.000)
  Max. delta:    0.061 (Z=  3.870)
  Mean delta:    0.016 (Z=  0.834)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 138  HIS  C
   A 139  HIS  N
   A 139  HIS  CA        121.70   134.03   -12.33  1.80e+00  4.69e+01   6.8*sigma
   A 114  PRO  N
   A 114  PRO  CA
   A 114  PRO  C         112.10   127.76   -15.66  2.50e+00  3.92e+01   6.3*sigma
   A 113  LYS  C
   A 114  PRO  N
   A 114  PRO  CD        125.00   102.41    22.59  4.10e+00  3.04e+01   5.5*sigma
   A 139  HIS  CA
   A 139  HIS  CB
   A 139  HIS  CG        113.80   119.10    -5.30  1.00e+00  2.81e+01   5.3*sigma
   A 114  PRO  CA
   A 114  PRO  C
   A 115  ALA  N         116.20   126.03    -9.83  2.00e+00  2.42e+01   4.9*sigma
   A 139  HIS  N
   A 139  HIS  CA
   A 139  HIS  C         111.00   123.86   -12.86  2.80e+00  2.11e+01   4.6*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.69    -4.59  1.00e+00  2.10e+01   4.6*sigma
   A 134  HIS  ND1
   A 134  HIS  CG
   A 134  HIS  CD2       106.10   110.64    -4.54  1.00e+00  2.06e+01   4.5*sigma
   A  53  LEU  CA
   A  53  LEU  C
   A  54  PRO  N         116.90   123.64    -6.74  1.50e+00  2.02e+01   4.5*sigma
   A 138  HIS  ND1
   A 138  HIS  CG
   A 138  HIS  CD2       106.10   110.30    -4.20  1.00e+00  1.76e+01   4.2*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.28    -4.18  1.00e+00  1.75e+01   4.2*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   110.22    -4.12  1.00e+00  1.69e+01   4.1*sigma
   A 139  HIS  ND1
   A 139  HIS  CE1
   A 139  HIS  NE2       108.40   112.49    -4.09  1.00e+00  1.68e+01   4.1*sigma

  Min. delta:    0.002 (Z=  0.001)
  Max. delta:   22.593 (Z=  6.849)
  Mean delta:    2.230 (Z=  1.207)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 128  MET  CA
   A 128  MET  C
   A 129  ARG  N
   A 129  ARG  CA        180.00   127.60    52.40  5.00e+00  1.10e+02  10.5*sigma
   A 127  ARG  CA
   A 127  ARG  C
   A 128  MET  N
   A 128  MET  CA        180.00   138.17    41.83  5.00e+00  7.00e+01   8.4*sigma
   A 133  GLU  CA
   A 133  GLU  C
   A 134  HIS  N
   A 134  HIS  CA        180.00   139.31    40.69  5.00e+00  6.62e+01   8.1*sigma
   A 113  LYS  CA
   A 113  LYS  C
   A 114  PRO  N
   A 114  PRO  CA        180.00  -150.63   -29.37  5.00e+00  3.45e+01   5.9*sigma
   A 138  HIS  CA
   A 138  HIS  C
   A 139  HIS  N
   A 139  HIS  CA        180.00   154.31    25.69  5.00e+00  2.64e+01   5.1*sigma
   A 115  ALA  CA
   A 115  ALA  C
   A 116  ASP  N
   A 116  ASP  CA        180.00   154.64    25.36  5.00e+00  2.57e+01   5.1*sigma
   A 131  ILE  CA
   A 131  ILE  C
   A 132  LEU  N
   A 132  LEU  CA        180.00   156.08    23.92  5.00e+00  2.29e+01   4.8*sigma
   A 118  ASP  CA
   A 118  ASP  C
   A 119  LEU  N
   A 119  LEU  CA        180.00   158.29    21.71  5.00e+00  1.89e+01   4.3*sigma
   A 116  ASP  CA
   A 116  ASP  C
   A 117  PRO  N
   A 117  PRO  CA        180.00   158.32    21.68  5.00e+00  1.88e+01   4.3*sigma
   A 129  ARG  CA
   A 129  ARG  C
   A 130  SER  N
   A 130  SER  CA        180.00   159.16    20.84  5.00e+00  1.74e+01   4.2*sigma
   A 132  LEU  CA
   A 132  LEU  C
   A 133  GLU  N
   A 133  GLU  CA        180.00   159.31    20.69  5.00e+00  1.71e+01   4.1*sigma

  Min. delta:    0.003
  Max. delta:   58.921
  Mean delta:   10.629

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.001
  Max. delta:    0.567
  Mean delta:    0.115

                       ----------Planar groups----------                       

  atoms                 rms_deltas   delta_max    residual   deviation
   A 113  LYS  C
   A 114  PRO  N
   A 114  PRO  CA
   A 114  PRO  CD            0.174       0.300       48.46   6.0*sigma

  Min. delta:    0.000
  Max. delta:    0.174
  Mean delta:    0.019

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

                       ----------Angle outliers----------                      

   A 114  PRO  HA , Angle C-CA-HA, observed: 95.769, delta from target: 13.231
   A 114  PRO  HA , Angle CB-CA-HA, observed: 122.988, delta from target: -13.988

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.011   0.061   2241  Z= 0.593
    Angle     :  1.984  22.593   4077  Z= 0.883
    Chirality :  0.115   0.567    176
    Planarity :  0.015   0.174    326
    Dihedral  :  9.338  59.143    768
    Min Nonbonded Distance : 1.765
  
  Molprobity Statistics.
    All-atom Clashscore : 3.61
    Ramachandran Plot:
      Outliers :  6.57 %
      Allowed  :  9.49 %
      Favored  : 83.94 %
    Rotamer:
      Outliers :  0.00 %
      Allowed  :  1.61 %
      Favored  : 98.39 %
    Cbeta Deviations :  0.76 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.00 %
      Twisted Proline : 0.00 %
      Twisted General : 2.29 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -0.78 (0.72), residues: 137
    helix:  2.23 (0.58), residues: 65
    sheet:  None (None), residues: 0
    loop : -3.45 (0.67), residues: 72
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.008   0.002   HIS A 139 
   PHE   0.064   0.019   PHE A  67 
   TYR   0.095   0.019   TYR A  12 
   ARG   0.051   0.013   ARG A 129 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.008   0.002   HIS A 139 
   PHE   0.049   0.014   PHE A  45 
   TYR   0.074   0.020   TYR A  12 
   ARG   0.019   0.005   ARG A  21 

                     ----------Asn/Gln/His flips----------                     

   A 135  HIS

=================================== Summary ===================================

  Ramachandran outliers =   5.84 %
                favored =  79.56 %
  Rotamer outliers      =   0.00 %
  C-beta deviations     =     2
  Clashscore            =   4.96
  RMS(bonds)            =   0.0113
  RMS(angles)           =   1.97
  MolProbity score      =   2.00

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py
  Ramachandran outliers =   5.84 %
                favored =  83.21 %
  Rotamer outliers      =   0.00 %
  C-beta deviations     =     1
  Clashscore            =   3.16
  RMS(bonds)            =   0.0120
  RMS(angles)           =   2.01
  MolProbity score      =   1.80

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py
  Ramachandran outliers =  10.22 %
                favored =  77.37 %
  Rotamer outliers      =   0.00 %
  C-beta deviations     =     6
  Clashscore            =   4.06
  RMS(bonds)            =   0.0115
  RMS(angles)           =   2.10
  MolProbity score      =   1.96

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py
  Ramachandran outliers =   6.57 %
                favored =  83.94 %
  Rotamer outliers      =   0.00 %
  C-beta deviations     =     1
  Clashscore            =   3.61
  RMS(bonds)            =   0.0111
  RMS(angles)           =   1.98
  MolProbity score      =   1.83

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py

============================== Collecting inputs ==============================


  Symmetric amino acids flipped
    Residue "A GLU    8": "OE1" <-> "OE2"
    Residue "A TYR   12": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU   16": "OE1" <-> "OE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   55": "OE1" <-> "OE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A PHE   67": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU   84": "OE1" <-> "OE2"
    Residue "A TYR   89": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU  120": "OE1" <-> "OE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""

============================== Collecting inputs ==============================

        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'PTRANS': 7, 'TRANS': 131}

End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  atoms                 ideal   model   delta   sigma   slack  residual   deviation
   A  43  HIS  CE1
   A  43  HIS  NE2         1.32     1.36    -0.04  1.00e-02  1.75e+01   4.2*sigma

  Min. delta:    0.000 (Z=  0.001)
  Max. delta:    0.061 (Z=  4.177)
  Mean delta:    0.016 (Z=  0.879)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  30  ILE  CA
   A  30  ILE  CB
   A  30  ILE  CG1       110.40   121.25   -10.85  1.70e+00  4.07e+01   6.4*sigma
   A  43  HIS  C
   A  43  HIS  CA
   A  43  HIS  CB        110.10    98.46    11.64  1.90e+00  3.75e+01   6.1*sigma
   A 114  PRO  N
   A 114  PRO  CA
   A 114  PRO  C         112.10   126.93   -14.83  2.50e+00  3.52e+01   5.9*sigma
   A  47  ASP  CA
   A  47  ASP  CB
   A  47  ASP  CG        112.60   106.75     5.85  1.00e+00  3.42e+01   5.9*sigma
   A  43  HIS  ND1
   A  43  HIS  CG
   A  43  HIS  CD2       106.10   111.57    -5.47  1.00e+00  3.00e+01   5.5*sigma
   A  51  ILE  CA
   A  51  ILE  C
   A  52  PRO  N         116.90   125.06    -8.16  1.50e+00  2.96e+01   5.4*sigma
   A 114  PRO  CA
   A 114  PRO  N
   A 114  PRO  CD        112.00   104.75     7.25  1.40e+00  2.68e+01   5.2*sigma
   A 137  HIS  CA
   A 137  HIS  CB
   A 137  HIS  CG        113.80   118.78    -4.98  1.00e+00  2.48e+01   5.0*sigma
   A 132  LEU  C
   A 133  GLU  N
   A 133  GLU  CA        121.70   130.50    -8.80  1.80e+00  2.39e+01   4.9*sigma
   A   2  LEU  CB
   A   2  LEU  CG
   A   2  LEU  CD1       110.70   124.94   -14.24  3.00e+00  2.25e+01   4.7*sigma
   A 134  HIS  ND1
   A 134  HIS  CG
   A 134  HIS  CD2       106.10   110.55    -4.45  1.00e+00  1.98e+01   4.4*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   110.47    -4.37  1.00e+00  1.91e+01   4.4*sigma
   A   2  LEU  CD1
   A   2  LEU  CG
   A   2  LEU  CD2       110.80   101.22     9.58  2.20e+00  1.90e+01   4.4*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.45    -4.35  1.00e+00  1.89e+01   4.3*sigma
   A 113  LYS  CA
   A 113  LYS  C
   A 114  PRO  N         116.90   123.29    -6.39  1.50e+00  1.82e+01   4.3*sigma
   A 101  LYS  CA
   A 101  LYS  C
   A 102  PRO  N         116.90   123.25    -6.35  1.50e+00  1.79e+01   4.2*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.32    -4.22  1.00e+00  1.78e+01   4.2*sigma
   A  95  ASP  CA
   A  95  ASP  CB
   A  95  ASP  CG        112.60   116.76    -4.16  1.00e+00  1.73e+01   4.2*sigma
   A   2  LEU  N
   A   2  LEU  CA
   A   2  LEU  CB        110.50   103.45     7.05  1.70e+00  1.72e+01   4.1*sigma
   A 138  HIS  ND1
   A 138  HIS  CG
   A 138  HIS  CD2       106.10   110.23    -4.13  1.00e+00  1.71e+01   4.1*sigma
   A  43  HIS  CB
   A  43  HIS  CG
   A  43  HIS  CD2       131.20   125.85     5.35  1.30e+00  1.70e+01   4.1*sigma
   A  14  VAL  CA
   A  14  VAL  CB
   A  14  VAL  CG1       110.40   117.40    -7.00  1.70e+00  1.69e+01   4.1*sigma
   A  13  SER  C
   A  14  VAL  N
   A  14  VAL  CA        121.70   129.08    -7.38  1.80e+00  1.68e+01   4.1*sigma
   A 135  HIS  N
   A 135  HIS  CA
   A 135  HIS  C         111.00   122.47   -11.47  2.80e+00  1.68e+01   4.1*sigma
   A 111  TYR  C
   A 111  TYR  CA
   A 111  TYR  CB        110.10   102.33     7.77  1.90e+00  1.67e+01   4.1*sigma

  Min. delta:    0.001 (Z=  0.000)
  Max. delta:   14.829 (Z=  6.380)
  Mean delta:    2.476 (Z=  1.351)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 137  HIS  CA
   A 137  HIS  C
   A 138  HIS  N
   A 138  HIS  CA        180.00   122.79    57.21  5.00e+00  1.31e+02  11.4*sigma
   A 119  LEU  CA
   A 119  LEU  C
   A 120  GLU  N
   A 120  GLU  CA        180.00   140.45    39.55  5.00e+00  6.26e+01   7.9*sigma
   A 134  HIS  CA
   A 134  HIS  C
   A 135  HIS  N
   A 135  HIS  CA        180.00   150.11    29.89  5.00e+00  3.57e+01   6.0*sigma
   A 138  HIS  CA
   A 138  HIS  C
   A 139  HIS  N
   A 139  HIS  CA        180.00   152.37    27.63  5.00e+00  3.05e+01   5.5*sigma
   A 118  ASP  CA
   A 118  ASP  C
   A 119  LEU  N
   A 119  LEU  CA        180.00   154.38    25.62  5.00e+00  2.63e+01   5.1*sigma
   A  78  ILE  CA
   A  78  ILE  C
   A  79  LYS  N
   A  79  LYS  CA        180.00   157.21    22.79  5.00e+00  2.08e+01   4.6*sigma
   A 115  ALA  CA
   A 115  ALA  C
   A 116  ASP  N
   A 116  ASP  CA        180.00   157.27    22.73  5.00e+00  2.07e+01   4.5*sigma
   A 132  LEU  CA
   A 132  LEU  C
   A 133  GLU  N
   A 133  GLU  CA        180.00   159.15    20.85  5.00e+00  1.74e+01   4.2*sigma

  Min. delta:    0.057
  Max. delta:   57.208
  Mean delta:   11.551

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.001
  Max. delta:    0.725
  Mean delta:    0.131

                       ----------Planar groups----------                       

  atoms                 rms_deltas   delta_max    residual   deviation
   A  43  HIS  CB
   A  43  HIS  CG
   A  43  HIS  ND1
   A  43  HIS  CD2
   A  43  HIS  CE1
   A  43  HIS  NE2           0.107       0.156      173.29   7.8*sigma
   A  68  TYR  CB
   A  68  TYR  CG
   A  68  TYR  CD1
   A  68  TYR  CD2
   A  68  TYR  CE1
   A  68  TYR  CE2
   A  68  TYR  CZ
   A  68  TYR  OH            0.065       0.114       84.72   5.7*sigma
   A  12  TYR  CB
   A  12  TYR  CG
   A  12  TYR  CD1
   A  12  TYR  CD2
   A  12  TYR  CE1
   A  12  TYR  CE2
   A  12  TYR  CZ
   A  12  TYR  OH            0.043       0.083       36.13   4.2*sigma

  Min. delta:    0.000
  Max. delta:    0.107
  Mean delta:    0.018

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

                       ----------Angle outliers----------                      

   A   2  LEU  HG , Angle CB-CG-HG, observed: 96.367, delta from target: 12.633
   A 114  PRO  HA , Angle CB-CA-HA, observed: 121.710, delta from target: -12.710
   A  30  ILE  HB , Angle CA-CB-HB, observed: 94.910, delta from target: 14.090
   A   2  LEU  HG , Angle CD2-CG-HG, observed: 122.091, delta from target: -14.091
   A 114  PRO  HA , Angle C-CA-HA, observed: 94.810, delta from target: 14.190
   A 138  HIS  HA , Angle N-CA-HA, observed: 95.771, delta from target: 14.229

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.012   0.061   2241  Z= 0.626
    Angle     :  2.220  14.829   4077  Z= 0.990
    Chirality :  0.131   0.725    176
    Planarity :  0.014   0.102    326
    Dihedral  : 10.074  57.208    768
    Min Nonbonded Distance : 1.749
  
  Molprobity Statistics.
    All-atom Clashscore : 3.61
    Ramachandran Plot:
      Outliers :  7.30 %
      Allowed  : 13.14 %
      Favored  : 79.56 %
    Rotamer:
      Outliers :  0.81 %
      Allowed  :  1.61 %
      Favored  : 97.58 %
    Cbeta Deviations :  2.27 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.00 %
      Twisted Proline : 0.00 %
      Twisted General : 1.53 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -1.64 (0.71), residues: 137
    helix:  0.56 (0.62), residues: 55
    sheet: -3.45 (1.03), residues: 10
    loop : -2.12 (0.80), residues: 72
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.005   0.002   HIS A 139 
   PHE   0.101   0.032   PHE A  15 
   TYR   0.154   0.027   TYR A 111 
   ARG   0.040   0.009   ARG A  21 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.005   0.002   HIS A 139 
   PHE   0.068   0.027   PHE A  15 
   TYR   0.119   0.026   TYR A 111 
   ARG   0.020   0.004   ARG A  21 

                     ----------Asn/Gln/His flips----------                     

   A  43  HIS
   A 137  HIS

=================================== Summary ===================================


============================== Collecting inputs ==============================


  Symmetric amino acids flipped
    Residue "A PHE   15": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ASP   29": "OD1" <-> "OD2"
    Residue "A GLU   49": "OE1" <-> "OE2"
    Residue "A TYR   50": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ASP   88": "OD1" <-> "OD2"
    Residue "A TYR   89": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR   91": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU  120": "OE1" <-> "OE2"
    Residue "A GLU  123": "OE1" <-> "OE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU  133": "OE1" <-> "OE2"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""
  Ramachandran outliers =   7.30 %
                favored =  79.56 %
  Rotamer outliers      =   0.81 %
  C-beta deviations     =     3
  Clashscore            =   3.61
  RMS(bonds)            =   0.0117
  RMS(angles)           =   2.22
  MolProbity score      =   1.89

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py
  Time building chain proxies: 1.12, per 1000 atoms: 0.51
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (79.608, 54.8, 50.401, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.
Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  


  Symmetric amino acids flipped
    Residue "A GLU    8": "OE1" <-> "OE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A TYR   50": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A PHE   67": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR   91": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""
Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  


  Symmetric amino acids flipped
    Residue "A TYR   12": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   24": "OE1" <-> "OE2"
    Residue "A GLU   49": "OE1" <-> "OE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   84": "OE1" <-> "OE2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU  133": "OE1" <-> "OE2"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""

============================== Collecting inputs ==============================

Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  

Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  


  Symmetric amino acids flipped
    Residue "A GLU    8": "OE1" <-> "OE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   24": "OE1" <-> "OE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A PHE   67": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""

============================== Collecting inputs ==============================


============================== Collecting inputs ==============================

        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'PTRANS': 7, 'TRANS': 131}

============================== Collecting inputs ==============================

        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'PTRANS': 7, 'TRANS': 131}

============================== Collecting inputs ==============================

        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'PTRANS': 7, 'TRANS': 131}

============================== Collecting inputs ==============================


============================== Collecting inputs ==============================


============================== Collecting inputs ==============================


============================== Collecting inputs ==============================


============================== Collecting inputs ==============================

  Time building chain proxies: 1.12, per 1000 atoms: 0.51
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (63.686, 33.857, 86.833, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.
  Time building chain proxies: 0.64, per 1000 atoms: 0.29
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (61.899, 39.081, 86.022, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.

============================== Collecting inputs ==============================


  Symmetric amino acids flipped
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   24": "OE1" <-> "OE2"
    Residue "A ASP   36": "OD1" <-> "OD2"
    Residue "A PHE   45": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR   50": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   75": "OE1" <-> "OE2"
    Residue "A TYR   81": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR   91": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU  120": "OE1" <-> "OE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""

============================== Collecting inputs ==============================


============================== Collecting inputs ==============================

  Time building chain proxies: 1.17, per 1000 atoms: 0.53
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (65.169, 72.171, 45.882, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'CIS': 3, 'PTRANS': 7, 'TRANS': 128}
Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  


============================== Collecting inputs ==============================

Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  


============================== Collecting inputs ==============================


============================== Collecting inputs ==============================


============================== Collecting inputs ==============================


============================== Collecting inputs ==============================


============================== Collecting inputs ==============================

        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'PTRANS': 7, 'TRANS': 131}

============================== Collecting inputs ==============================

Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  

        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'PTRANS': 7, 'TRANS': 131}
Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  

  Time building chain proxies: 1.13, per 1000 atoms: 0.51
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (82.952, 43.931, 73.181, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.
Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  

Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  


============================== Collecting inputs ==============================


  Symmetric amino acids flipped
    Residue "A GLU    8": "OE1" <-> "OE2"
    Residue "A PHE   15": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   24": "OE1" <-> "OE2"
    Residue "A GLU   32": "OE1" <-> "OE2"
    Residue "A GLU   49": "OE1" <-> "OE2"
    Residue "A TYR   50": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A TYR   68": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU   75": "OE1" <-> "OE2"
    Residue "A TYR   89": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR   91": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU  120": "OE1" <-> "OE2"
    Residue "A GLU  123": "OE1" <-> "OE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""

============================== Collecting inputs ==============================


============================== Collecting inputs ==============================


============================== Collecting inputs ==============================

  Time building chain proxies: 0.66, per 1000 atoms: 0.30
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (54.414, 83.674, 52.479, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.
Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  


============================== Collecting inputs ==============================

Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  

Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  

Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  

Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  

  Time building chain proxies: 1.21, per 1000 atoms: 0.55
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (52.155, 53.891, 74.164, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.

  Symmetric amino acids flipped
    Residue "A GLU    8": "OE1" <-> "OE2"
    Residue "A TYR   12": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   24": "OE1" <-> "OE2"
    Residue "A GLU   32": "OE1" <-> "OE2"
    Residue "A ASP   47": "OD1" <-> "OD2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A PHE   67": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU   75": "OE1" <-> "OE2"
    Residue "A TYR   91": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU  120": "OE1" <-> "OE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""
Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  

Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  


  Symmetric amino acids flipped
    Residue "A TYR   12": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   24": "OE1" <-> "OE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A PHE   67": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR   68": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU   75": "OE1" <-> "OE2"
    Residue "A TYR   89": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU  123": "OE1" <-> "OE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU  133": "OE1" <-> "OE2"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""

  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 1.05
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 1.18 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  

Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  

Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  

Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  

Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  


============================== Collecting inputs ==============================

  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 117
        1.23 -     1.43: 359
        1.43 -     1.63: 655
        1.63 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" C   SER A  98 "
       model="   1" pdb=" O   SER A  98 "
    ideal  model  delta    sigma   weight residual
    1.231  1.158  0.073 2.00e-02 2.50e+03 1.31e+01
  bond model="   1" pdb=" C   THR A  92 "
       model="   1" pdb=" O   THR A  92 "
    ideal  model  delta    sigma   weight residual
    1.231  1.160  0.071 2.00e-02 2.50e+03 1.26e+01
  bond model="   1" pdb=" CE1 HIS A 136 "
       model="   1" pdb=" NE2 HIS A 136 "
    ideal  model  delta    sigma   weight residual
    1.321  1.356 -0.035 1.00e-02 1.00e+04 1.20e+01
  bond model="   1" pdb=" CE1 HIS A 134 "
       model="   1" pdb=" NE2 HIS A 134 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.18e+01
  bond model="   1" pdb=" CE1 HIS A 137 "
       model="   1" pdb=" NE2 HIS A 137 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.17e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       92.74 -   100.84: 20
      100.84 -   108.93: 922
      108.93 -   117.02: 2094
      117.02 -   125.12: 971
      125.12 -   133.21: 70
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" C   SER A  98 "
        model="   1" pdb=" CA  SER A  98 "
        model="   1" pdb=" CB  SER A  98 "
      ideal   model   delta    sigma   weight residual
     110.10   97.97   12.13 1.90e+00 2.77e-01 4.08e+01
  angle model="   1" pdb=" CA  ILE A  30 "
        model="   1" pdb=" CB  ILE A  30 "
        model="   1" pdb=" CG1 ILE A  30 "
      ideal   model   delta    sigma   weight residual
     110.40  120.26   -9.86 1.70e+00 3.46e-01 3.36e+01
  angle model="   1" pdb=" CA  LYS A 101 "
        model="   1" pdb=" C   LYS A 101 "
        model="   1" pdb=" N   PRO A 102 "
      ideal   model   delta    sigma   weight residual
     116.90  125.37   -8.47 1.50e+00 4.44e-01 3.19e+01
  angle model="   1" pdb=" C   LEU A  61 "
        model="   1" pdb=" CA  LEU A  61 "
        model="   1" pdb=" CB  LEU A  61 "
      ideal   model   delta    sigma   weight residual
     110.10   99.55   10.55 1.90e+00 2.77e-01 3.08e+01
  angle model="   1" pdb=" N   LEU A  93 "
        model="   1" pdb=" CA  LEU A  93 "
        model="   1" pdb=" HA  LEU A  93 "
      ideal   model   delta    sigma   weight residual
     110.00   93.37   16.63 3.00e+00 1.11e-01 3.07e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    18.04: 973
       18.04 -    36.08: 42
       36.08 -    54.12: 13
       54.12 -    72.16: 1
       72.16 -    90.20: 3
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" CA  PRO A 117 "
           model="   1" pdb=" C   PRO A 117 "
           model="   1" pdb=" N   ASP A 118 "
           model="   1" pdb=" CA  ASP A 118 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  145.47   34.53     0      5.00e+00 4.00e-02 4.77e+01
  dihedral model="   1" pdb=" CA  LEU A 119 "
           model="   1" pdb=" C   LEU A 119 "
           model="   1" pdb=" N   GLU A 120 "
           model="   1" pdb=" CA  GLU A 120 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  150.42   29.58     0      5.00e+00 4.00e-02 3.50e+01
  dihedral model="   1" pdb=" C   ILE A  86 "
           model="   1" pdb=" N   ILE A  86 "
           model="   1" pdb=" CA  ILE A  86 "
           model="   1" pdb=" CB  ILE A  86 "
      ideal   model   delta  harmonic     sigma   weight residual
    -122.00 -136.63   14.63     0      2.50e+00 1.60e-01 3.43e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.000 -    0.130: 124
       0.130 -    0.259: 38
       0.259 -    0.388: 7
       0.388 -    0.518: 2
       0.518 -    0.647: 5
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CB  ILE A  78 "
            model="   1" pdb=" CA  ILE A  78 "
            model="   1" pdb=" CG1 ILE A  78 "
            model="   1" pdb=" CG2 ILE A  78 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.64    2.00    0.65 2.00e-01 2.50e+01 1.05e+01
  chirality model="   1" pdb=" CA  PRO A  52 "
            model="   1" pdb=" N   PRO A  52 "
            model="   1" pdb=" C   PRO A  52 "
            model="   1" pdb=" CB  PRO A  52 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.72    2.13    0.59 2.00e-01 2.50e+01 8.58e+00
  chirality model="   1" pdb=" CA  GLU A  75 "
            model="   1" pdb=" N   GLU A  75 "
            model="   1" pdb=" C   GLU A  75 "
            model="   1" pdb=" CB  GLU A  75 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    1.94    0.57 2.00e-01 2.50e+01 8.09e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  89 "    0.260 2.00e-02 2.50e+03   1.27e-01 4.83e+02
        model="   1" pdb=" CG  TYR A  89 "    0.022 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  89 "   -0.043 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  89 "   -0.052 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  89 "   -0.064 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  89 "   -0.037 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  89 "    0.019 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  89 "    0.275 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  89 "   -0.073 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  89 "   -0.110 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  89 "   -0.133 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  89 "   -0.064 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  PHE A  67 "   -0.050 2.00e-02 2.50e+03   9.21e-02 2.55e+02
        model="   1" pdb=" CG  PHE A  67 "    0.038 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 PHE A  67 "    0.064 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 PHE A  67 "   -0.028 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 PHE A  67 "   -0.058 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 PHE A  67 "    0.035 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  PHE A  67 "    0.011 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 PHE A  67 "    0.164 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 PHE A  67 "   -0.118 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 PHE A  67 "   -0.193 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 PHE A  67 "    0.093 2.00e-02 2.50e+03
        model="   1" pdb=" HZ  PHE A  67 "    0.041 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A 105 "    0.117 2.00e-02 2.50e+03   7.95e-02 1.89e+02
        model="   1" pdb=" CG  TYR A 105 "   -0.019 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A 105 "   -0.065 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A 105 "   -0.001 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A 105 "    0.049 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A 105 "   -0.018 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A 105 "    0.034 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A 105 "   -0.020 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A 105 "   -0.174 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A 105 "    0.022 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A 105 "    0.136 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A 105 "   -0.063 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.70 -     2.28: 376
        2.28 -     2.86: 5211
        2.86 -     3.44: 5667
        3.44 -     4.02: 7418
        4.02 -     4.60: 11060
  Nonbonded interactions: 29732
  Sorted by model distance:
  nonbonded model="   1" pdb=" HZ2 LYS A  40 "
            model="   1" pdb=" OE2 GLU A 123 "
     model   vdw
     1.702 1.850
  nonbonded model="   1" pdb="HD23 LEU A  26 "
            model="   1" pdb="HE22 GLN A  66 "
     model   vdw
     1.714 2.270
  nonbonded model="   1" pdb=" HB3 PRO A 102 "
            model="   1" pdb=" H   ALA A 124 "
     model   vdw
     1.724 2.270
  nonbonded model="   1" pdb="HD11 ILE A  37 "
            model="   1" pdb=" HE  ARG A  58 "
     model   vdw
     1.745 2.270
  nonbonded model="   1" pdb="HG22 ILE A  86 "
            model="   1" pdb=" H   GLY A  87 "
     model   vdw
     1.747 2.270
  ... (remaining 29727 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.
Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  

Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  

Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  

Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  

Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  


  Symmetric amino acids flipped
    Residue "A GLU    8": "OE1" <-> "OE2"
    Residue "A PHE   15": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   24": "OE1" <-> "OE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A TYR   68": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR   91": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR  111": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU  133": "OE1" <-> "OE2"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""
Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  


  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 0.72
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 0.82 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  


  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 0.82
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 0.91 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.


  Symmetric amino acids flipped
    Residue "A GLU    8": "OE1" <-> "OE2"
    Residue "A TYR   12": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A PHE   15": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   49": "OE1" <-> "OE2"
    Residue "A TYR   50": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A TYR   68": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ASP   74": "OD1" <-> "OD2"
    Residue "A GLU   75": "OE1" <-> "OE2"
    Residue "A TYR   81": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU   84": "OE1" <-> "OE2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU  123": "OE1" <-> "OE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'CIS': 1, 'PTRANS': 7, 'TRANS': 130}

  Symmetric amino acids flipped
    Residue "A GLU    8": "OE1" <-> "OE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   24": "OE1" <-> "OE2"
    Residue "A GLU   32": "OE1" <-> "OE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A PHE   67": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR   81": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR  111": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU  120": "OE1" <-> "OE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU  133": "OE1" <-> "OE2"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""
  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 111
        1.23 -     1.43: 355
        1.43 -     1.63: 665
        1.63 -     1.83: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" CE1 HIS A 139 "
       model="   1" pdb=" NE2 HIS A 139 "
    ideal  model  delta    sigma   weight residual
    1.321  1.357 -0.036 1.00e-02 1.00e+04 1.27e+01
  bond model="   1" pdb=" CD  ARG A 129 "
       model="   1" pdb=" NE  ARG A 129 "
    ideal  model  delta    sigma   weight residual
    1.458  1.507 -0.049 1.40e-02 5.10e+03 1.25e+01
  bond model="   1" pdb=" CE1 HIS A 138 "
       model="   1" pdb=" NE2 HIS A 138 "
    ideal  model  delta    sigma   weight residual
    1.321  1.356 -0.035 1.00e-02 1.00e+04 1.24e+01
  bond model="   1" pdb=" CE1 HIS A 136 "
       model="   1" pdb=" NE2 HIS A 136 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.19e+01
  bond model="   1" pdb=" CE1 HIS A 137 "
       model="   1" pdb=" NE2 HIS A 137 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.16e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       94.76 -   102.25: 16
      102.25 -   109.73: 1994
      109.73 -   117.21: 1047
      117.21 -   124.69: 947
      124.69 -   132.17: 73
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" CA  ILE A  30 "
        model="   1" pdb=" CB  ILE A  30 "
        model="   1" pdb=" CG1 ILE A  30 "
      ideal   model   delta    sigma   weight residual
     110.40  120.93  -10.53 1.70e+00 3.46e-01 3.84e+01
  angle model="   1" pdb=" C   GLY A  87 "
        model="   1" pdb=" N   ASP A  88 "
        model="   1" pdb=" CA  ASP A  88 "
      ideal   model   delta    sigma   weight residual
     121.70  132.17  -10.47 1.80e+00 3.09e-01 3.38e+01
  angle model="   1" pdb=" CB  LEU A   2 "
        model="   1" pdb=" CG  LEU A   2 "
        model="   1" pdb=" CD1 LEU A   2 "
      ideal   model   delta    sigma   weight residual
     110.70  126.86  -16.16 3.00e+00 1.11e-01 2.90e+01
  angle model="   1" pdb=" CD2 LEU A   2 "
        model="   1" pdb=" CG  LEU A   2 "
        model="   1" pdb=" HG  LEU A   2 "
      ideal   model   delta    sigma   weight residual
     108.00  123.55  -15.55 3.00e+00 1.11e-01 2.69e+01
  angle model="   1" pdb=" CA  THR A  92 "
        model="   1" pdb=" CB  THR A  92 "
        model="   1" pdb=" CG2 THR A  92 "
      ideal   model   delta    sigma   weight residual
     110.50  119.15   -8.65 1.70e+00 3.46e-01 2.59e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    12.47: 935
       12.47 -    24.93: 68
       24.93 -    37.40: 24
       37.40 -    49.86: 2
       49.86 -    62.33: 3
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" CA  ARG A  21 "
           model="   1" pdb=" C   ARG A  21 "
           model="   1" pdb=" N   PRO A  22 "
           model="   1" pdb=" CA  PRO A  22 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  152.66   27.34     0      5.00e+00 4.00e-02 2.99e+01
  dihedral model="   1" pdb=" CA  ASP A  88 "
           model="   1" pdb=" C   ASP A  88 "
           model="   1" pdb=" N   TYR A  89 "
           model="   1" pdb=" CA  TYR A  89 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  152.77   27.23     0      5.00e+00 4.00e-02 2.96e+01
  dihedral model="   1" pdb=" N   THR A  92 "
           model="   1" pdb=" C   THR A  92 "
           model="   1" pdb=" CA  THR A  92 "
           model="   1" pdb=" CB  THR A  92 "
      ideal   model   delta  harmonic     sigma   weight residual
     123.40  135.66  -12.26     0      2.50e+00 1.60e-01 2.40e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.000 -    0.093: 131
       0.093 -    0.186: 37
       0.186 -    0.280: 5
       0.280 -    0.373: 1
       Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 122
        1.23 -     1.43: 342
        1.43 -     1.62: 667
        1.62 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" C   TYR A  81 "
       model="   1" pdb=" N   THR A  82 "
    ideal  model  delta    sigma   weight residual
    1.329  1.411 -0.082 1.40e-02 5.10e+03 3.47e+01
  bond model="   1" pdb=" C   THR A  92 "
       model="   1" pdb=" O   THR A  92 "
    ideal  model  delta    sigma   weight residual
    1.231  1.146  0.085 2.00e-02 2.50e+03 1.80e+01
  bond model="   1" pdb=" N   ILE A  30 "
       model="   1" pdb=" CA  ILE A  30 "
    ideal  model  delta    sigma   weight residual
    1.458  1.386  0.072 1.90e-02 2.77e+03 1.44e+01
  bond model="   1" pdb=" CD  ARG A 127 "
       model="   1" pdb=" NE  ARG A 127 "
    ideal  model  delta    sigma   weight residual
    1.458  1.508 -0.050 1.40e-02 5.10e+03 1.27e+01
  bond model="   1" pdb=" CE1 HIS A 138 "
       model="   1" pdb=" NE2 HIS A 138 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.15e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       93.65 -   101.45: 13
      101.45 -   109.24: 1127
      109.24 -   117.04: 1914
      117.04 -   124.83: 944
      124.83 -   132.63: 79
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" CA  ILE A  30 "
        model="   1" pdb=" CB  ILE A  30 "
        model="   1" pdb=" CG1 ILE A  30 "
      ideal   model   delta    sigma   weight residual
     110.40  129.52  -19.12 1.70e+00 3.46e-01 1.26e+02
  angle model="   1" pdb=" CA  ILE A  30 "
        model="   1" pdb=" CB  ILE A  30 "
        model="   1" pdb=" CG2 ILE A  30 "
      ideal   model   delta    sigma   weight residual
     110.50   95.26   15.24 1.70e+00 3.46e-01 8.03e+01
  angle model="   1" pdb=" CA  THR A  92 "
        model="   1" pdb=" C   THR A  92 "
        model="   1" pdb=" N   LEU A  93 "
      ideal   model   delta    sigma   weight residual
     116.20  131.19  -14.99 2.00e+00 2.50e-01 5.62e+01
  angle model="   1" pdb=" C   TYR A  81 "
        model="   1" pdb=" CA  TYR A  81 "
        model="   1" pdb=" CB  TYR A  81 "
      ideal   model   delta    sigma   weight residual
     110.10   95.88   14.22 1.90e+00 2.77e-01 5.60e+01
  angle model="   1" pdb=" CG2 ILE A  30 "
        model="   1" pdb=" CB  ILE A  30 "
        model="   1" pdb=" HB  ILE A  30 "
      ideal   model   delta    sigma   weight residual
     109.00  131.19  -22.19 3.00e+00 1.11e-01 5.47e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    17.78: 973
       17.78 -    35.56: 42
       35.56 -    53.33: 13
       53.33 -    71.11: 3
       71.11 -    88.89: 1
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" CA  HIS A 135 "
           model="   1" pdb=" C   HIS A 135 "
           model="   1" pdb=" N   HIS A 136 "
           model="   1" pdb=" CA  HIS A 136 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  144.22   35.78     0      5.00e+00 4.00e-02 5.12e+01
  dihedral model="   1" pdb=" CA  HIS A 136 "
           model="   1" pdb=" C   HIS A 136 "
           model="   1" pdb=" N   HIS A 137 "
           model="   1" pdb=" CA  HIS A 137 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  149.79   30.21     0      5.00e+00 4.00e-02 3.65e+01
  dihedral model="   1" pdb=" N   THR A  82 "
           model="   1" pdb=" C   THR A  82 "
           model="   1" pdb=" CA  THR A  82 "
           model="   1" pdb=" CB  THR A  82 "
      ideal   model   delta  harmonic     sigma   weight residual
     123.40  137.70  -14.30     0      2.50e+00 1.60e-01 3.27e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.000 -    0.108: 137
       0.108 -    0.216: 31
       0.216 -    0.324: 5
       0.324 -    0.432: 2
       0.373 -    0.466: 2
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  THR A  92 "
            model="   1" pdb=" N   THR A  92 "
            model="   1" pdb=" C   THR A  92 "
            model="   1" pdb=" CB  THR A  92 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.53    2.06    0.47 2.00e-01 2.50e+01 5.43e+00
  chirality model="   1" pdb=" CB  ILE A  30 "
            model="   1" pdb=" CA  ILE A  30 "
            model="   1" pdb=" CG1 ILE A  30 "
            model="   1" pdb=" CG2 ILE A  30 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.64    2.27    0.38 2.00e-01 2.50e+01 3.54e+00
  chirality model="   1" pdb=" CA  PRO A   6 "
            model="   1" pdb=" N   PRO A   6 "
            model="   1" pdb=" C   PRO A   6 "
            model="   1" pdb=" CB  PRO A   6 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.72    2.41    0.31 2.00e-01 2.50e+01 2.42e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  PHE A  15 "    0.046 2.00e-02 2.50e+03   6.69e-02 1.34e+02
        model="   1" pdb=" CG  PHE A  15 "    0.011 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 PHE A  15 "   -0.040 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 PHE A  15 "    0.024 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 PHE A  15 "    0.022 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 PHE A  15 "   -0.043 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  PHE A  15 "    0.023 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 PHE A  15 "   -0.118 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 PHE A  15 "    0.078 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 PHE A  15 "    0.063 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 PHE A  15 "   -0.134 2.00e-02 2.50e+03
        model="   1" pdb=" HZ  PHE A  15 "    0.067 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  50 "    0.096 2.00e-02 2.50e+03   5.44e-02 8.89e+01
        model="   1" pdb=" CG  TYR A  50 "   -0.000 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  50 "   -0.040 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  50 "    0.001 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  50 "    0.007 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  50 "   -0.029 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  50 "    0.013 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  50 "    0.075 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  50 "   -0.100 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  50 "    0.021 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  50 "    0.035 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  50 "   -0.079 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  89 "   -0.045 2.00e-02 2.50e+03   5.03e-02 7.59e+01
        model="   1" pdb=" CG  TYR A  89 "    0.010 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  89 "    0.002 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  89 "    0.004 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  89 "    0.033 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  89 "    0.032 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  89 "    0.020 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  89 "   -0.133 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  89 "   -0.025 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  89 "   -0.018 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  89 "    0.062 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  89 "    0.058 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.40 -     2.04: 22
        2.04 -     2.68: 308  0.432 -    0.540: 1
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  THR A  82 "
            model="   1" pdb=" N   THR A  82 "
            model="   1" pdb=" C   THR A  82 "
            model="   1" pdb=" CB  THR A  82 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.53    1.99    0.54 2.00e-01 2.50e+01 7.29e+00
  chirality model="   1" pdb=" CA  ASP A  88 "
            model="   1" pdb=" N   ASP A  88 "
            model="   1" pdb=" C   ASP A  88 "
            model="   1" pdb=" CB  ASP A  88 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.12    0.39 2.00e-01 2.50e+01 3.89e+00
  chirality model="   1" pdb=" CA  HIS A 136 "
            model="   1" pdb=" N   HIS A 136 "
            model="   1" pdb=" C   HIS A 136 "
            model="   1" pdb=" CB  HIS A 136 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.17    0.34 2.00e-01 2.50e+01 2.82e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  PHE A  45 "    0.057 2.00e-02 2.50e+03   4.69e-02 6.60e+01
        model="   1" pdb=" CG  PHE A  45 "   -0.001 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 PHE A  45 "   -0.029 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 PHE A  45 "    0.006 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 PHE A  45 "    0.006 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 PHE A  45 "   -0.031 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  PHE A  45 "    0.025 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 PHE A  45 "   -0.071 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 PHE A  45 "    0.036 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 PHE A  45 "    0.017 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 PHE A  45 "   -0.091 2.00e-02 2.50e+03
        model="   1" pdb=" HZ  PHE A  45 "    0.076 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  89 "    0.036 2.00e-02 2.50e+03   3.72e-02 4.14e+01
        model="   1" pdb=" CG  TYR A  89 "    0.055 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  89 "    0.005 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  89 "   -0.009 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  89 "   -0.021 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  89 "   -0.007 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  89 "    0.007 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  89 "    0.071 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  89 "   -0.011 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  89 "   -0.054 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  89 "   -0.057 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  89 "   -0.015 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  81 "   -0.072 2.00e-02 2.50e+03   2.92e-02 2.56e+01
        model="   1" pdb=" CG  TYR A  81 "    0.009 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  81 "    0.016 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  81 "    0.014 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  81 "    0.008 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  81 "    0.009 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  81 "   -0.005 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  81 "   -0.053 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  81 "    0.027 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  81 "    0.022 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  81 "    0.010 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  81 "    0.015 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.62 -     2.22: 182
        2.22 -     2.81: 442
        2.68 -     3.32: 6188
        3.32 -     3.96: 7029
        3.96 -     4.60: 10615
  Nonbonded interactions: 26936
  Sorted by model distance:
  nonbonded model="   1" pdb="HG23 ILE A  30 "
            model="   1" pdb="HD21 LEU A  61 "
     model   vdw
     1.399 2.440
  nonbonded model="   1" pdb="HG22 ILE A  86 "
            model="   1" pdb=" H   ASP A  88 "
     model   vdw
     1.622 2.270
  nonbonded model="   1" pdb=" OE1 GLU A  16 "
            model="   1" pdb=" HZ2 LYS A  19 "
     model   vdw
     1.794 1.850
  nonbonded model="   1" pdb="HG23 VAL A  41 "
            model="   1" pdb=" H   HIS A  43 "
     model   vdw
     1.794 2.270
  nonbonded model="   1" pdb=" H   VAL A  14 "
            model="   1" pdb="HG22 VAL A  14 "
     model   vdw
     1.807 2.270
  ... (remaining 26931 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.
58
        2.81 -     3.41: 5695
        3.41 -     4.00: 6949
        4.00 -     4.60: 10407
  Nonbonded interactions: 27691
  Sorted by model distance:
  nonbonded model="   1" pdb="HD13 LEU A   2 "
            model="   1" pdb="HG22 ILE A  30 "
     model   vdw
     1.622 2.440
  nonbonded model="   1" pdb=" OE1 GLU A  84 "
            model="   1" pdb="HH22 ARG A 127 "
     model   vdw
     1.711 1.850
  nonbonded model="   1" pdb=" HZ2 LYS A  63 "
            model="   1" pdb=" OD2 ASP A 103 "
     model   vdw
     1.725 1.850
  nonbonded model="   1" pdb=" HG  LEU A   2 "
            model="   1" pdb=" H   ILE A   4 "
     model   vdw
     1.729 2.270
  nonbonded model="   1" pdb="HD12 LEU A   2 "
            model="   1" pdb=" H   LEU A   3 "
     model   vdw
     1.752 2.270
  ... (remaining 27686 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'CIS': 1, 'PTRANS': 7, 'TRANS': 130}

  Symmetric amino acids flipped
    Residue "A GLU    8": "OE1" <-> "OE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   24": "OE1" <-> "OE2"
    Residue "A GLU   32": "OE1" <-> "OE2"
    Residue "A PHE   45": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU   49": "OE1" <-> "OE2"
    Residue "A TYR   50": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   84": "OE1" <-> "OE2"
    Residue "A ASP   88": "OD1" <-> "OD2"
    Residue "A TYR   89": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR   91": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU  120": "OE1" <-> "OE2"
    Residue "A GLU  123": "OE1" <-> "OE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU  133": "OE1" <-> "OE2"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""
  Time building chain proxies: 1.10, per 1000 atoms: 0.50
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (49.156, 75.247, 59.152, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.

  Symmetric amino acids flipped
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   24": "OE1" <-> "OE2"
    Residue "A TYR   50": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A PHE   67": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR   68": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU   75": "OE1" <-> "OE2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ASP  116": "OD1" <-> "OD2"
    Residue "A ASP  118": "OD1" <-> "OD2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""

  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 1.04
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 1.17 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'PTRANS': 7, 'TRANS': 131}

  Symmetric amino acids flipped
    Residue "A GLU    8": "OE1" <-> "OE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   24": "OE1" <-> "OE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A PHE   67": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR   81": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU   84": "OE1" <-> "OE2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU  120": "OE1" <-> "OE2"
    Residue "A GLU  123": "OE1" <-> "OE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU  133": "OE1" <-> "OE2"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""

  Symmetric amino acids flipped
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   24": "OE1" <-> "OE2"
    Residue "A GLU   32": "OE1" <-> "OE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A PHE   67": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR   91": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ASP   95": "OD1" <-> "OD2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU  123": "OE1" <-> "OE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU  133": "OE1" <-> "OE2"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""
  Time building chain proxies: 1.01, per 1000 atoms: 0.46
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (72.793, 48.347, 84.231, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.

  Symmetric amino acids flipped
    Residue "A GLU    8": "OE1" <-> "OE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   24": "OE1" <-> "OE2"
    Residue "A GLU   32": "OE1" <-> "OE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   75": "OE1" <-> "OE2"
    Residue "A TYR   89": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR  111": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""
Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  


  Symmetric amino acids flipped
    Residue "A GLU    8": "OE1" <-> "OE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   24": "OE1" <-> "OE2"
    Residue "A GLU   32": "OE1" <-> "OE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   75": "OE1" <-> "OE2"
    Residue "A TYR   89": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR  111": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""
  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 140
        1.23 -     1.43: 335
        1.43 -     1.63: 656
        1.63 -     1.83: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" CD  ARG A  21 "
       model="   1" pdb=" NE  ARG A  21 "
    ideal  model  delta    sigma   weight residual
    1.458  1.513 -0.055 1.40e-02 5.10e+03 1.52e+01
  bond model="   1" pdb=" CE1 HIS A  43 "
       model="   1" pdb=" NE2 HIS A  43 "
    ideal  model  delta    sigma   weight residual
    1.321  1.356 -0.035 1.00e-02 1.00e+04 1.22e+01
  bond model="   1" pdb=" CE1 HIS A 135 "
       model="   1" pdb=" NE2 HIS A 135 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.18e+01
  bond model="   1" pdb=" CE1 HIS A 137 "
       model="   1" pdb=" NE2 HIS A 137 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.17e+01
  bond model="   1" pdb=" CE1 HIS A 138 "
       model="   1" pdb=" NE2 HIS A 138 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.16e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       96.96 -   103.88: 41
      103.88 -   110.81: 2278
      110.81 -   117.73: 782
      117.73 -   124.65: 897
      124.65 -   131.58: 79
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" CA  THR A  82 "
        model="   1" pdb=" CB  THR A  82 "
        model="   1" pdb=" OG1 THR A  82 "
      ideal   model   delta    sigma   weight residual
     109.60  120.49  -10.89 1.50e+00 4.44e-01 5.27e+01
  angle model="   1" pdb=" CA  LEU A  53 "
        model="   1" pdb=" C   LEU A  53 "
        model="   1" pdb=" N   PRO A  54 "
      ideal   model   delta    sigma   weight residual
     116.90  127.09  -10.19 1.50e+00 4.44e-01 4.61e+01
  angle model="   1" pdb=" CA  ASP A  44 "
        model="   1" pdb=" CB  ASP A  44 "
        model="   1" pdb=" CG  ASP A  44 "
      ideal   model   delta    sigma   weight residual
     112.60  119.01   -6.41 1.00e+00 1.00e+00 4.11e+01
  angle model="   1" pdb=" CA  ASP A 116 "
        model="   1" pdb=" CB  ASP A 116 "
        model="   1" pdb=" CG  ASP A 116 "
      ideal   model   delta    sigma   weight residual
     112.60  118.68   -6.08 1.00e+00 1.00e+00 3.70e+01
  angle model="   1" pdb=" CA  LYS A 113 "
        model="   1" pdb=" C   LYS A 113 "
        model="   1" pdb=" N   PRO A 114 "
      ideal   model   delta    sigma   weight residual
     116.90  125.54   -8.64 1.50e+00 4.44e-01 3.32e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    16.01: 975
       16.01 -    32.01: 43
       32.01 -    48.02: 9
       48.02 -    64.03: 3
       64.03 -    80.03: 2
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" CA  LEU A  53 "
           model="   1" pdb=" C   LEU A  53 "
           model="   1" pdb=" N   PRO A  54 "
           model="   1" pdb=" CA  PRO A  54 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  150.49   29.51     0      5.00e+00 4.00e-02 3.48e+01
  dihedral model="   1" pdb=" CA  LYS A 113 "
           model="   1" pdb=" C   LYS A 113 "
           model="   1" pdb=" N   PRO A 114 "
           model="   1" pdb=" CA  PRO A 114 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  150.70   29.30     0      5.00e+00 4.00e-02 3.43e+01
  dihedral model="   1" pdb=" CA  ASP A 116 "
           model="   1" pdb=" C   ASP A 116 "
           model="   1" pdb=" N   PRO A 117 "
           model="   1" pdb=" CA  PRO A 117 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  151.20   28.80     0      5.00e+00 4.00e-02 3.32e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.001 -    0.100: 132
       0.100 -    0.199: 28
       0.199 -    0.297: 7
       0.297 -    0.396: 6
       0.396 -    0.495: 3
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  GLU A  55 "
            model="   1" pdb=" N   GLU A  55 "
            model="   1" pdb=" C   GLU A  55 "
            model="   1" pdb=" CB  GLU A  55 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.02    0.49 2.00e-01 2.50e+01 6.12e+00
  chirality model="   1" pdb=" CA  TYR A  81 "
            model="   1" pdb=" N   TYR A  81 "
            model="   1" pdb=" C   TYR A  81 "
            model="   1" pdb=" CB  TYR A  81 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.10    0.41 2.00e-01 2.50e+01 4.28e+00
  chirality model="   1" pdb=" CA  THR A  34 "
            model="   1" pdb=" N   THR A  34 "
            model="   1" pdb=" C   THR A  34 "
            model="   1" pdb=" CB  THR A  34 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.53    2.12    0.40 2.00e-01 2.50e+01 4.09e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  PHE A  67 "    0.114 2.00e-02 2.50e+03   5.06e-02 7.68e+01
        model="   1" pdb=" CG  PHE A  67 "   -0.053 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 PHE A  67 "   -0.045 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 PHE A  67 "   -0.020 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 PHE A  67 "    0.020 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 PHE A  67 "   -0.007 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  PHE A  67 "    0.007 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 PHE A  67 "   -0.082 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 PHE A  67 "   -0.005 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 PHE A  67 "    0.071 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 PHE A  67 "   -0.008 2.00e-02 2.50e+03
        model="   1" pdb=" HZ  PHE A  67 "    0.008 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  68 "    0.116 2.00e-02 2.50e+03   4.99e-02 7.47e+01
        model="   1" pdb=" CG  TYR A  68 "   -0.044 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  68 "   -0.041 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  68 "   -0.025 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  68 "    0.018 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  68 "    0.001 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  68 "    0.003 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  68 "   -0.005 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  68 "   -0.078 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  68 "   -0.031 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  68 "    0.068 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  68 "    0.018 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" C   ASP A 116 "   -0.087 5.00e-02 4.00e+02   1.34e-01 2.87e+01
        model="   1" pdb=" N   PRO A 117 "    0.232 5.00e-02 4.00e+02
        model="   1" pdb=" CA  PRO A 117 "   -0.072 5.00e-02 4.00e+02
        model="   1" pdb=" CD  PRO A 117 "   -0.073 5.00e-02 4.00e+02
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.69 -     2.27: 240
        2.27 -     2.85: 4839
        2.85 -     3.43: 5149
        3.43 -     4.02: 6407
        4.02 -     4.60: 9607
  Nonbonded interactions: 26242
  Sorted by model distance:
  nonbonded model="   1" pdb=" OD2 ASP A  36 "
            model="   1" pdb=" HH  TYR A  68 "
     model   vdw
     1.687 1.850
  nonbonded model="   1" pdb=" OE1 GLN A  66 "
            model="   1" pdb=" HZ2 LYS A  79 "
     model   vdw
     1.731 1.850
  nonbonded model="   1" pdb="HE21 GLN A  28 "
            model="   1" pdb=" OE2 GLU A  32 "
     model   vdw
     1.755 1.850
  nonbonded model="   1" pdb="HH21 ARG A  21 "
            model="   1" pdb=" OD2 ASP A  29 "
     model   vdw
     1.800 1.850
  nonbonded model="   1" pdb=" HB3 GLU A  55 "
            model="   1" pdb=" H   THR A  56 "
     model   vdw
     1.823 2.270
  ... (remaining 26237 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'PTRANS': 7, 'TRANS': 131}

  Symmetric amino acids flipped
    Residue "A GLU    8": "OE1" <-> "OE2"
    Residue "A TYR   12": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU   16": "OE1" <-> "OE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   24": "OE1" <-> "OE2"
    Residue "A GLU   32": "OE1" <-> "OE2"
    Residue "A ASP   44": "OD1" <-> "OD2"
    Residue "A GLU   55": "OE1" <-> "OE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A TYR   91": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR  111": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU  120": "OE1" <-> "OE2"
    Residue "A GLU  123": "OE1" <-> "OE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU  133": "OE1" <-> "OE2"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""
  Time building chain proxies: 1.15, per 1000 atoms: 0.52
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (96.889, 57.393, 67.119, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.

  Symmetric amino acids flipped
    Residue "A GLU    8": "OE1" <-> "OE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ASP   36": "OD1" <-> "OD2"
    Residue "A ASP   47": "OD1" <-> "OD2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A PHE   67": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU   75": "OE1" <-> "OE2"
    Residue "A ASP   88": "OD1" <-> "OD2"
    Residue "A TYR   89": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR   91": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ASP   95": "OD1" <-> "OD2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR  111": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU  133": "OE1" <-> "OE2"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""

  Symmetric amino acids flipped
    Residue "A GLU    8": "OE1" <-> "OE2"
    Residue "A PHE   15": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   24": "OE1" <-> "OE2"
    Residue "A GLU   32": "OE1" <-> "OE2"
    Residue "A GLU   49": "OE1" <-> "OE2"
    Residue "A TYR   50": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A TYR   68": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU   75": "OE1" <-> "OE2"
    Residue "A TYR   89": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR   91": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU  120": "OE1" <-> "OE2"
    Residue "A GLU  123": "OE1" <-> "OE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""

  Symmetric amino acids flipped
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ASP   47": "OD1" <-> "OD2"
    Residue "A GLU   49": "OE1" <-> "OE2"
    Residue "A GLU   55": "OE1" <-> "OE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ASP   88": "OD1" <-> "OD2"
    Residue "A TYR   89": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR   91": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU  120": "OE1" <-> "OE2"
    Residue "A GLU  123": "OE1" <-> "OE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU  133": "OE1" <-> "OE2"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""

  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 0.96
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 1.09 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'PTRANS': 7, 'TRANS': 131}
  Time building chain proxies: 0.83, per 1000 atoms: 0.37
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (74.112, 84.257, 52.434, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.

  Symmetric amino acids flipped
    Residue "A GLU    8": "OE1" <-> "OE2"
    Residue "A PHE   15": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU   16": "OE1" <-> "OE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ASP   36": "OD1" <-> "OD2"
    Residue "A PHE   45": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A PHE   67": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU   75": "OE1" <-> "OE2"
    Residue "A GLU   84": "OE1" <-> "OE2"
    Residue "A TYR   89": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR   91": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ASP  116": "OD1" <-> "OD2"
    Residue "A GLU  120": "OE1" <-> "OE2"
    Residue "A GLU  123": "OE1" <-> "OE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU  133": "OE1" <-> "OE2"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""

  Symmetric amino acids flipped
    Residue "A GLU    8": "OE1" <-> "OE2"
    Residue "A GLU   16": "OE1" <-> "OE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A TYR   50": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU   55": "OE1" <-> "OE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   75": "OE1" <-> "OE2"
    Residue "A GLU   84": "OE1" <-> "OE2"
    Residue "A TYR   91": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ASP  116": "OD1" <-> "OD2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'CIS': 1, 'PTRANS': 7, 'TRANS': 130}

  Symmetric amino acids flipped
    Residue "A GLU    8": "OE1" <-> "OE2"
    Residue "A PHE   15": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   32": "OE1" <-> "OE2"
    Residue "A ASP   36": "OD1" <-> "OD2"
    Residue "A PHE   45": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ASP   74": "OD1" <-> "OD2"
    Residue "A ASP   88": "OD1" <-> "OD2"
    Residue "A TYR   89": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR   91": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ASP   95": "OD1" <-> "OD2"
    Residue "A GLU  123": "OE1" <-> "OE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""
  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 140
        1.23 -     1.43: 334
        1.43 -     1.63: 657
        1.63 -     1.83: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" CE1 HIS A 139 "
       model="   1" pdb=" NE2 HIS A 139 "
    ideal  model  delta    sigma   weight residual
    1.321  1.358 -0.037 1.00e-02 1.00e+04 1.36e+01
  bond model="   1" pdb=" CE1 HIS A 137 "
       model="   1" pdb=" NE2 HIS A 137 "
    ideal  model  delta    sigma   weight residual
    1.321  1.357 -0.036 1.00e-02 1.00e+04 1.31e+01
  bond model="   1" pdb=" CE1 HIS A 135 "
       model="   1" pdb=" NE2 HIS A 135 "
    ideal  model  delta    sigma   weight residual
    1.321  1.357 -0.036 1.00e-02 1.00e+04 1.31e+01
  bond model="   1" pdb=" CE1 HIS A  43 "
       model="   1" pdb=" NE2 HIS A  43 "
    ideal  model  delta    sigma   weight residual
    1.321  1.356 -0.035 1.00e-02 1.00e+04 1.25e+01
  bond model="   1" pdb=" CE1 HIS A 134 "
       model="   1" pdb=" NE2 HIS A 134 "
    ideal  model  delta    sigma   weight residual
    1.321  1.356 -0.035 1.00e-02 1.00e+04 1.22e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       96.86 -   104.88: 69
      104.88 -   112.89: 2614
      112.89 -   120.91: 852
      120.91 -   128.93: 534
      128.93 -   136.95: 8
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" C   HIS A 136 "
        model="   1" pdb=" N   HIS A 137 "
        model="   1" pdb=" CA  HIS A 137 "
      ideal   model   delta    sigma   weight residual
     121.70  136.95  -15.25 1.80e+00 3.09e-01 7.18e+01
  angle model="   1" pdb=" CA  HIS A 136 "
        model="   1" pdb=" CB  HIS A 136 "
        model="   1" pdb=" CG  HIS A 136 "
      ideal   model   delta    sigma   weight residual
     113.80  120.46   -6.66 1.00e+00 1.00e+00 4.43e+01
  angle model="   1" pdb=" C   HIS A 134 "
        model="   1" pdb=" N   HIS A 135 "
        model="   1" pdb=" CA  HIS A 135 "
      ideal   model   delta    sigma   weight residual
     121.70  132.50  -10.80 1.80e+00 3.09e-01 3.60e+01
  angle model="   1" pdb=" CA  LYS A 113 "
        model="   1" pdb=" C   LYS A 113 "
        model="   1" pdb=" N   PRO A 114 "
      ideal   model   delta    sigma   weight residual
     116.90  125.88   -8.98 1.50e+00 4.44e-01 3.59e+01
  angle model="   1" pdb=" CA  HIS A 135 "
        model="   1" pdb=" CB  HIS A 135 "
        model="   1" pdb=" CG  HIS A 135 "
      ideal   model   delta    sigma   weight residual
     113.80  119.58   -5.78 1.00e+00 1.00e+00 3.34e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    23.24: 998
       23.24 -    46.49: 28
       46.49 -    69.73: 5
       69.73 -    92.98: 0
       92.98 -   116.22: 1
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" CA  SER A 130 "
           model="   1" pdb=" C   SER A 130 "
           model="   1" pdb=" N   ILE A 131 "
           model="   1" pdb=" CA  ILE A 131 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00   63.78  116.22     0      5.00e+00 4.00e-02 5.40e+02
  dihedral model="   1" pdb=" CA  HIS A 134 "
           model="   1" pdb=" C   HIS A 134 "
           model="   1" pdb=" N   HIS A 135 "
           model="   1" pdb=" CA  HIS A 135 "
      ideal   model   delta  harmonic     sigma   weight residual
       0.00   35.11  -35.11     0      5.00e+00 4.00e-02 4.93e+01
  dihedral model="   1" pdb=" N   HIS A 136 "
           model="   1" pdb=" C   HIS A 136 "
           model="   1" pdb=" CA  HIS A 136 "
           model="   1" pdb=" CB  HIS A 136 "
      ideal   model   delta  harmonic     sigma   weight residual
     122.80  139.56  -16.76     0      2.50e+00 1.60e-01 4.49e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.000 -    0.112: 137
       0.112 -    0.223: 33
       0.223 -    0.335: 3
       0.335 -    0.447: 2
       0.447 -    0.558: 1
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  HIS A 136 "
            model="   1" pdb=" N   HIS A 136 "
            model="   1" pdb=" C   HIS A 136 "
            model="   1" pdb=" CB  HIS A 136 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    1.95    0.56 2.00e-01 2.50e+01 7.79e+00
  chirality model="   1" pdb=" CA  ASP A  95 "
            model="   1" pdb=" N   ASP A  95 "
            model="   1" pdb=" C   ASP A  95 "
            model="   1" pdb=" CB  ASP A  95 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.11    0.40 2.00e-01 2.50e+01 4.08e+00
  chirality model="   1" pdb=" CA  MET A 128 "
            model="   1" pdb=" N   MET A 128 "
            model="   1" pdb=" C   MET A 128 "
            model="   1" pdb=" CB  MET A 128 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.17    0.34 2.00e-01 2.50e+01 2.91e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  PHE A  45 "   -0.447 2.00e-02 2.50e+03   2.39e-01 1.71e+03
        model="   1" pdb=" CG  PHE A  45 "   -0.021 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 PHE A  45 "    0.186 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 PHE A  45 "    0.022 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 PHE A  45 "   -0.065 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 PHE A  45 "    0.096 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  PHE A  45 "   -0.098 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 PHE A  45 "    0.496 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 PHE A  45 "    0.002 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 PHE A  45 "   -0.205 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 PHE A  45 "    0.280 2.00e-02 2.50e+03
        model="   1" pdb=" HZ  PHE A  45 "   -0.245 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A 111 "   -0.225 2.00e-02 2.50e+03   9.78e-02 2.87e+02
        model="   1" pdb=" CG  TYR A 111 "    0.001 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A 111 "    0.050 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A 111 "    0.041 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A 111 "    0.025 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A 111 "    0.029 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A 111 "   -0.048 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A 111 "   -0.179 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A 111 "    0.099 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A 111 "    0.077 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A 111 "    0.058 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A 111 "    0.072 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  HIS A 137 "    0.120 2.00e-02 2.50e+03   7.11e-02 1.01e+02
        model="   1" pdb=" CG  HIS A 137 "   -0.107 2.00e-02 2.50e+03
        model="   1" pdb=" ND1 HIS A 137 "   -0.094 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 HIS A 137 "   -0.021 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 HIS A 137 "    0.010 2.00e-02 2.50e+03
        model="   1" pdb=" NE2 HIS A 137 "    0.049 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 HIS A 137 "   -0.010 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 HIS A 137 "    0.053 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.74 -     2.31: 377
        2.31 -     2.88: 5042
        2.88 -     3.45: 5094
        3.45 -     4.03: 6534
        4.03 -     4.60: 9893
  Nonbonded interactions: 26940
  Sorted by model distance:
  nonbonded model="   1" pdb=" HZ2 LYS A  63 "
            model="   1" pdb=" OE1 GLU A  84 "
     model   vdw
     1.737 1.850
  nonbonded model="   1" pdb=" OD2 ASP A  36 "
            model="   1" pdb=" HH  TYR A  68 "
     model   vdw
     1.773 1.850
  nonbonded model="   1" pdb=" OE1 GLU A  49 "
            model="   1" pdb=" H   GLU A  49 "
     model   vdw
     1.814 1.850
  nonbonded model="   1" pdb=" H   VAL A  57 "
            model="   1" pdb="HG23 VAL A  57 "
     model   vdw
     1.828 2.270
  nonbonded model="   1" pdb="HE21 GLN A 100 "
            model="   1" pdb=" HB2 TYR A 105 "
     model   vdw
     1.843 2.270
  ... (remaining 26935 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Symmetric amino acids flipped
    Residue "A GLU    8": "OE1" <-> "OE2"
    Residue "A TYR   12": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A PHE   15": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU   16": "OE1" <-> "OE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ASP   47": "OD1" <-> "OD2"
    Residue "A GLU   55": "OE1" <-> "OE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A PHE   67": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU   84": "OE1" <-> "OE2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU  120": "OE1" <-> "OE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""

  Symmetric amino acids flipped
    Residue "A GLU    8": "OE1" <-> "OE2"
    Residue "A TYR   12": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU   16": "OE1" <-> "OE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   32": "OE1" <-> "OE2"
    Residue "A TYR   50": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A PHE   67": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR   68": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU   84": "OE1" <-> "OE2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""

  Symmetric amino acids flipped
    Residue "A TYR   12": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU   16": "OE1" <-> "OE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   32": "OE1" <-> "OE2"
    Residue "A PHE   45": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A TYR   68": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR   89": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR   91": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ASP  118": "OD1" <-> "OD2"
    Residue "A GLU  123": "OE1" <-> "OE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""

  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 0.98
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 1.12 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'PTRANS': 7, 'TRANS': 131}
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'PTRANS': 7, 'TRANS': 131}

  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 1.08
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 1.20 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.


  Symmetric amino acids flipped
    Residue "A GLU    8": "OE1" <-> "OE2"
    Residue "A TYR   12": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   24": "OE1" <-> "OE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A PHE   67": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ASP   74": "OD1" <-> "OD2"
    Residue "A GLU   75": "OE1" <-> "OE2"
    Residue "A TYR   81": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU   84": "OE1" <-> "OE2"
    Residue "A TYR   91": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU  123": "OE1" <-> "OE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""
  Time building chain proxies: 1.11, per 1000 atoms: 0.50
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (54.304, 92.306, 66.432, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.
  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 134
        1.23 -     1.43: 338
        1.43 -     1.63: 659
        1.63 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" CD  ARG A  21 "
       model="   1" pdb=" NE  ARG A  21 "
    ideal  model  delta    sigma   weight residual
    1.458  1.507 -0.049 1.40e-02 5.10e+03 1.23e+01
  bond model="   1" pdb=" CD  ARG A 129 "
       model="   1" pdb=" NE  ARG A 129 "
    ideal  model  delta    sigma   weight residual
    1.458  1.505 -0.047 1.40e-02 5.10e+03 1.15e+01
  bond model="   1" pdb=" CE1 HIS A 134 "
       model="   1" pdb=" NE2 HIS A 134 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.14e+01
  bond model="   1" pdb=" CE1 HIS A 136 "
       model="   1" pdb=" NE2 HIS A 136 "
    ideal  model  delta    sigma   weight residual
    1.321  1.354 -0.033 1.00e-02 1.00e+04 1.10e+01
  bond model="   1" pdb=" CE1 HIS A 139 "
       model="   1" pdb=" NE2 HIS A 139 "
    ideal  model  delta    sigma   weight residual
    1.321  1.354 -0.033 1.00e-02 1.00e+04 1.10e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       95.14 -   102.46: 24
      102.46 -   109.77: 2002
      109.77 -   117.09: 1020
      117.09 -   124.40: 937
      124.40 -   131.72: 94
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" CD1 LEU A  53 "
        model="   1" pdb=" CG  LEU A  53 "
        model="   1" pdb=" CD2 LEU A  53 "
      ideal   model   delta    sigma   weight residual
     110.80  127.67  -16.87 2.20e+00 2.07e-01 5.88e+01
  angle model="   1" pdb=" C   ALA A 124 "
        model="   1" pdb=" CA  ALA A 124 "
        model="   1" pdb=" CB  ALA A 124 "
      ideal   model   delta    sigma   weight residual
     110.50  101.49    9.01 1.50e+00 4.44e-01 3.61e+01
  angle model="   1" pdb=" C   ILE A  86 "
        model="   1" pdb=" CA  ILE A  86 "
        model="   1" pdb=" CB  ILE A  86 "
      ideal   model   delta    sigma   weight residual
     111.60  123.58  -11.98 2.00e+00 2.50e-01 3.59e+01
  angle model="   1" pdb=" N   THR A  82 "
        model="   1" pdb=" CA  THR A  82 "
        model="   1" pdb=" CB  THR A  82 "
      ideal   model   delta    sigma   weight residual
     111.50  120.90   -9.40 1.70e+00 3.46e-01 3.06e+01
  angle model="   1" pdb=" CB  LEU A  53 "
        model="   1" pdb=" CG  LEU A  53 "
        model="   1" pdb=" HG  LEU A  53 "
      ideal   model   delta    sigma   weight residual
     109.00  124.99  -15.99 3.00e+00 1.11e-01 2.84e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    13.58: 938
       13.58 -    27.17: 65
       27.17 -    40.75: 16
       40.75 -    54.33: 8
       54.33 -    67.91: 5
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" CA  ILE A  86 "
           model="   1" pdb=" C   ILE A  86 "
           model="   1" pdb=" N   GLY A  87 "
           model="   1" pdb=" CA  GLY A  87 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  151.01   28.99     0      5.00e+00 4.00e-02 3.36e+01
  dihedral model="   1" pdb=" N   PHE A  45 "
           model="   1" pdb=" C   PHE A  45 "
           model="   1" pdb=" CA  PHE A  45 "
           model="   1" pdb=" CB  PHE A  45 "
      ideal   model   delta  harmonic     sigma   weight residual
     122.80  137.17  -14.37     0      2.50e+00 1.60e-01 3.30e+01
  dihedral model="   1" pdb=" CA  PHE A  45 "
           model="   1" pdb=" C   PHE A  45 "
           model="   1" pdb=" N   SER A  46 "
           model="   1" pdb=" CA  SER A  46 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  155.95   24.05     0      5.00e+00 4.00e-02 2.31e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.001 -    0.117: 134
       0.117 -    0.233: 31
       0.233 -    0.349: 10
       0.349 -    0.465: 0
       0.465 -    0.581: 1
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  PHE A  45 "
            model="   1" pdb=" N   PHE A  45 "
            model="   1" pdb=" C   PHE A  45 "
            model="   1" pdb=" CB  PHE A  45 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    1.93    0.58 2.00e-01 2.50e+01 8.44e+00
  chirality model="   1" pdb=" CG  LEU A  53 "
            model="   1" pdb=" CB  LEU A  53 "
            model="   1" pdb=" CD1 LEU A  53 "
            model="   1" pdb=" CD2 LEU A  53 "
    both_signs  ideal   model   delta    sigma   weight residual
      False     -2.59   -2.27   -0.32 2.00e-01 2.50e+01 2.63e+00
  chirality model="   1" pdb=" CA  TYR A  50 "
            model="   1" pdb=" N   TYR A  50 "
            model="   1" pdb=" C   TYR A  50 "
            model="   1" pdb=" CB  TYR A  50 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.19    0.32 2.00e-01 2.50e+01 2.50e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  PHE A  15 "    0.002 2.00e-02 2.50e+03   1.01e-01 3.07e+02
        model="   1" pdb=" CG  PHE A  15 "    0.022 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 PHE A  15 "    0.054 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 PHE A  15 "   -0.055 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 PHE A  15 "   -0.049 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 PHE A  15 "    0.061 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  PHE A  15 "   -0.006 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 PHE A  15 "    0.145 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 PHE A  15 "   -0.186 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 PHE A  15 "   -0.147 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 PHE A  15 "    0.181 2.00e-02 2.50e+03
        model="   1" pdb=" HZ  PHE A  15 "   -0.021 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  91 "    0.206 2.00e-02 2.50e+03   9.31e-02 2.60e+02
        model="   1" pdb=" CG  TYR A  91 "    0.050 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  91 "   -0.033 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  91 "   -0.054 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  91 "   -0.024 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  91 "   -0.003 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  91 "    0.038 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  91 "    0.127 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  91 "   -0.094 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  91 "   -0.157 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  91 "   -0.058 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  91 "    0.002 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  12 "    0.025 2.00e-02 2.50e+03   5.75e-02 9.90e+01
        model="   1" pdb=" CG  TYR A  12 "    0.009 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  12 "   -0.010 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  12 "   -0.018 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  12 "    0.034 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  12 "    0.042 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  12 "    0.061 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  12 "   -0.127 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  12 "   -0.053 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  12 "   -0.077 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  12 "    0.046 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  12 "    0.069 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.73 -     2.31: 408
        2.31 -     2.88: 5135
        2.88 -     3.45: 5407
        3.45 -     4.03: 6890
        4.03 -     4.60: 10150
  Nonbonded interactions: 27990
  Sorted by model distance:
  nonbonded model="   1" pdb=" HA  TYR A  68 "
            model="   1" pdb="HD22 ASN A  72 "
     model   vdw
     1.734 2.270
  nonbonded model="   1" pdb=" HZ3 LYS A 109 "
            model="   1" pdb=" OD2 ASP A 118 "
     model   vdw
     1.753 1.850
  nonbonded model="   1" pdb=" OE1 GLU A  55 "
            model="   1" pdb=" HE  ARG A  58 "
     model   vdw
     1.764 1.850
  nonbonded model="   1" pdb=" OE2 GLU A  55 "
            model="   1" pdb="HH21 ARG A  58 "
     model   vdw
     1.801 1.850
  nonbonded model="   1" pdb=" HG  LEU A  62 "
            model="   1" pdb="HE21 GLN A  66 "
     model   vdw
     1.820 2.270
  ... (remaining 27985 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.
  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 125
        1.23 -     1.43: 343
        1.43 -     1.62: 662
        1.62 -     1.82: 5
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" CA  SER A  97 "
       model="   1" pdb=" C   SER A  97 "
    ideal  model  delta    sigma   weight residual
    1.525  1.408  0.117 2.10e-02 2.27e+03 3.09e+01
  bond model="   1" pdb=" CA  LYS A 113 "
       model="   1" pdb=" C   LYS A 113 "
    ideal  model  delta    sigma   weight residual
    1.525  1.633 -0.108 2.10e-02 2.27e+03 2.66e+01
  bond model="   1" pdb=" CD  ARG A  21 "
       model="   1" pdb=" NE  ARG A  21 "
    ideal  model  delta    sigma   weight residual
    1.458  1.508 -0.050 1.40e-02 5.10e+03 1.28e+01
  bond model="   1" pdb=" CE1 HIS A 134 "
       model="   1" pdb=" NE2 HIS A 134 "
    ideal  model  delta    sigma   weight residual
    1.321  1.356 -0.035 1.00e-02 1.00e+04 1.23e+01
  bond model="   1" pdb=" N   PRO A 102 "
       model="   1" pdb=" CD  PRO A 102 "
    ideal  model  delta    sigma   weight residual
    1.473  1.426  0.047 1.40e-02 5.10e+03 1.14e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       94.18 -   101.80: 18
      101.80 -   109.43: 1292
      109.43 -   117.05: 1724
      117.05 -   124.67: 949
      124.67 -   132.30: 94
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" CA  SER A  97 "
        model="   1" pdb=" CB  SER A  97 "
        model="   1" pdb=" OG  SER A  97 "
      ideal   model   delta    sigma   weight residual
     111.10  132.30  -21.20 2.00e+00 2.50e-01 1.12e+02
  angle model="   1" pdb=" C   SER A  97 "
        model="   1" pdb=" CA  SER A  97 "
        model="   1" pdb=" CB  SER A  97 "
      ideal   model   delta    sigma   weight residual
     110.10   94.18   15.92 1.90e+00 2.77e-01 7.02e+01
  angle model="   1" pdb=" N   PRO A 114 "
        model="   1" pdb=" CA  PRO A 114 "
        model="   1" pdb=" C   PRO A 114 "
      ideal   model   delta    sigma   weight residual
     112.10  128.26  -16.16 2.50e+00 1.60e-01 4.18e+01
  angle model="   1" pdb=" CA  PHE A  15 "
        model="   1" pdb=" CB  PHE A  15 "
        model="   1" pdb=" CG  PHE A  15 "
      ideal   model   delta    sigma   weight residual
     113.80  108.05    5.75 1.00e+00 1.00e+00 3.31e+01
  angle model="   1" pdb=" C   PHE A  15 "
        model="   1" pdb=" CA  PHE A  15 "
        model="   1" pdb=" CB  PHE A  15 "
      ideal   model   delta    sigma   weight residual
     110.10   99.72   10.38 1.90e+00 2.77e-01 2.99e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    12.11: 936
       12.11 -    24.22: 75
       24.22 -    36.34: 10
       36.34 -    48.45: 9
       48.45 -    60.56: 2
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" CA  HIS A 138 "
           model="   1" pdb=" C   HIS A 138 "
           model="   1" pdb=" N   HIS A 139 "
           model="   1" pdb=" CA  HIS A 139 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  133.64   46.36     0      5.00e+00 4.00e-02 8.60e+01
  dihedral model="   1" pdb=" CA  PRO A 117 "
           model="   1" pdb=" C   PRO A 117 "
           model="   1" pdb=" N   ASP A 118 "
           model="   1" pdb=" CA  ASP A 118 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  143.24   36.76     0      5.00e+00 4.00e-02 5.41e+01
  dihedral model="   1" pdb=" CA  LYS A 113 "
           model="   1" pdb=" C   LYS A 113 "
           model="   1" pdb=" N   PRO A 114 "
           model="   1" pdb=" CA  PRO A 114 "
      ideal   model   delta  harmonic     sigma   weight residual
    -180.00 -144.75  -35.25     0      5.00e+00 4.00e-02 4.97e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.000 -    0.098: 129
       0.098 -    0.195: 31
       0.195 -    0.292: 11
       0.292 -    0.390: 2
            Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'PTRANS': 7, 'TRANS': 131}
   0.390 -    0.487: 3
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  LYS A 113 "
            model="   1" pdb=" N   LYS A 113 "
            model="   1" pdb=" C   LYS A 113 "
            model="   1" pdb=" CB  LYS A 113 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    3.00   -0.49 2.00e-01 2.50e+01 5.93e+00
  chirality model="   1" pdb=" CA  ASP A 116 "
            model="   1" pdb=" N   ASP A 116 "
            model="   1" pdb=" C   ASP A 116 "
            model="   1" pdb=" CB  ASP A 116 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.05    0.46 2.00e-01 2.50e+01 5.26e+00
  chirality model="   1" pdb=" CA  PRO A 114 "
            model="   1" pdb=" N   PRO A 114 "
            model="   1" pdb=" C   PRO A 114 "
            model="   1" pdb=" CB  PRO A 114 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.72    2.29    0.42 2.00e-01 2.50e+01 4.49e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  PHE A  15 "   -0.345 2.00e-02 2.50e+03   1.45e-01 6.35e+02
        model="   1" pdb=" CG  PHE A  15 "    0.022 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 PHE A  15 "    0.104 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 PHE A  15 "    0.057 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 PHE A  15 "   -0.000 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 PHE A  15 "    0.038 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  PHE A  15 "   -0.076 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 PHE A  15 "    0.231 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 PHE A  15 "    0.094 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 PHE A  15 "   -0.021 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 PHE A  15 "    0.099 2.00e-02 2.50e+03
        model="   1" pdb=" HZ  PHE A  15 "   -0.202 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  PHE A  67 "    0.119 2.00e-02 2.50e+03   5.80e-02 1.01e+02
        model="   1" pdb=" CG  PHE A  67 "    0.010 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 PHE A  67 "   -0.014 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 PHE A  67 "   -0.040 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 PHE A  67 "   -0.021 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 PHE A  67 "    0.003 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  PHE A  67 "    0.032 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 PHE A  67 "   -0.025 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 PHE A  67 "   -0.103 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 PHE A  67 "   -0.061 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 PHE A  67 "    0.012 2.00e-02 2.50e+03
        model="   1" pdb=" HZ  PHE A  67 "    0.087 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  12 "   -0.086 2.00e-02 2.50e+03   5.65e-02 9.57e+01
        model="   1" pdb=" CG  TYR A  12 "   -0.013 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  12 "    0.043 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  12 "   -0.004 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  12 "   -0.024 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  12 "    0.024 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  12 "   -0.025 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  12 "   -0.032 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  12 "    0.126 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  12 "   -0.016 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  12 "   -0.067 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  12 "    0.075 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.55 -     2.16: 113
        2.16 -     2.77: 4190
        2.77 -     3.38: 5787
        3.38 -     3.99: 7056
        3.99 -     4.60: 10612
  Nonbonded interactions: 27758
  Sorted by model distance:
  nonbonded model="   1" pdb=" HB2 LEU A  93 "
            model="   1" pdb=" HB3 SER A  97 "
     model   vdw
     1.548 2.440
  nonbonded model="   1" pdb=" HB2 LEU A   3 "
            model="   1" pdb="HD22 LEU A  61 "
     model   vdw
     1.724 2.440
  nonbonded model="   1" pdb=" OD2 ASP A  36 "
            model="   1" pdb=" HZ3 LYS A  40 "
     model   vdw
     1.776 1.850
  nonbonded model="   1" pdb=" O   GLY A  94 "
            model="   1" pdb=" HG  SER A  97 "
     model   vdw
     1.835 1.850
  nonbonded model="   1" pdb=" O   PRO A 102 "
            model="   1" pdb=" H   ALA A 106 "
     model   vdw
     1.844 1.850
  ... (remaining 27753 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'PTRANS': 7, 'TRANS': 131}

  Symmetric amino acids flipped
    Residue "A GLU   16": "OE1" <-> "OE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A TYR   89": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR   91": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU  120": "OE1" <-> "OE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""

  Symmetric amino acids flipped
    Residue "A GLU    8": "OE1" <-> "OE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A TYR   50": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A PHE   67": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR   91": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""

  Symmetric amino acids flipped
    Residue "A GLU    8": "OE1" <-> "OE2"
    Residue "A TYR   12": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU   16": "OE1" <-> "OE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A PHE   67": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ASP   88": "OD1" <-> "OD2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ASP  118": "OD1" <-> "OD2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""
  Time building chain proxies: 1.10, per 1000 atoms: 0.50
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (73.106, 47.2, 79.546, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'PTRANS': 7, 'TRANS': 131}

  Symmetric amino acids flipped
    Residue "A GLU    8": "OE1" <-> "OE2"
    Residue "A PHE   15": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   24": "OE1" <-> "OE2"
    Residue "A GLU   49": "OE1" <-> "OE2"
    Residue "A GLU   55": "OE1" <-> "OE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A TYR   68": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR  111": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU  120": "OE1" <-> "OE2"
    Residue "A GLU  123": "OE1" <-> "OE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'PTRANS': 7, 'TRANS': 131}

  Symmetric amino acids flipped
    Residue "A TYR   12": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A PHE   67": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR   68": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR   81": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU   84": "OE1" <-> "OE2"
    Residue "A TYR   89": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ASP  103": "OD1" <-> "OD2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU  120": "OE1" <-> "OE2"
    Residue "A GLU  123": "OE1" <-> "OE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""
  Time building chain proxies: 1.11, per 1000 atoms: 0.50
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (74.892, 62.97, 67.808, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.
  Time building chain proxies: 0.83, per 1000 atoms: 0.37
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (47.118, 45.977, 64.528, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.
  Time building chain proxies: 0.74, per 1000 atoms: 0.33
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (47.118, 45.977, 64.528, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'CIS': 1, 'PTRANS': 7, 'TRANS': 130}
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'PTRANS': 7, 'TRANS': 131}
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'PTRANS': 7, 'TRANS': 131}
  Time building chain proxies: 1.09, per 1000 atoms: 0.49
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (53.102, 52.623, 72.121, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'PTRANS': 7, 'TRANS': 131}
  Time building chain proxies: 1.10, per 1000 atoms: 0.50
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (59.704, 50.95, 94.681, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'PTRANS': 7, 'TRANS': 131}
  Time building chain proxies: 1.11, per 1000 atoms: 0.50
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (54.524, 37.039, 86.993, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.
  Time building chain proxies: 0.68, per 1000 atoms: 0.31
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (64.673, 78.897, 76.615, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.
  Time building chain proxies: 0.97, per 1000 atoms: 0.44
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (49.156, 75.247, 59.152, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'PTRANS': 7, 'TRANS': 131}
  Time building chain proxies: 1.08, per 1000 atoms: 0.49
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (56.894, 45.211, 76.658, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'CIS': 1, 'PCIS': 1, 'PTRANS': 6, 'TRANS': 130}
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'PTRANS': 7, 'TRANS': 131}
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'CIS': 1, 'PTRANS': 7, 'TRANS': 130}
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'PTRANS': 7, 'TRANS': 131}
  Time building chain proxies: 1.09, per 1000 atoms: 0.49
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (87.391, 54.031, 56.51, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.

  Symmetric amino acids flipped
    Residue "A GLU    8": "OE1" <-> "OE2"
    Residue "A PHE   15": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU   16": "OE1" <-> "OE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ASP   36": "OD1" <-> "OD2"
    Residue "A PHE   45": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ASP   47": "OD1" <-> "OD2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   84": "OE1" <-> "OE2"
    Residue "A TYR   89": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR   91": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ASP  118": "OD1" <-> "OD2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU  133": "OE1" <-> "OE2"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""
  Time building chain proxies: 1.16, per 1000 atoms: 0.52
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (75.48, 65.442, 48.271, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'PTRANS': 7, 'TRANS': 131}
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'PTRANS': 7, 'TRANS': 131}
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'PTRANS': 7, 'TRANS': 131}
  Time building chain proxies: 1.11, per 1000 atoms: 0.50
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (105.819, 45.891, 55.637, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'CIS': 2, 'PTRANS': 7, 'TRANS': 129}
  Time building chain proxies: 1.12, per 1000 atoms: 0.51
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (51.159, 85.509, 69.313, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.

  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 0.88
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 1.01 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Time building chain proxies: 1.12, per 1000 atoms: 0.51
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (52.644, 41.079, 53.54, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.
  Time building chain proxies: 1.14, per 1000 atoms: 0.51
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (85.899, 51.556, 63.294, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.
  Time building chain proxies: 1.08, per 1000 atoms: 0.49
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (71.918, 39.128, 78.635, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.

  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 1.03
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 1.16 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'PTRANS': 7, 'TRANS': 131}

  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 0.88
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 0.95 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'PTRANS': 7, 'TRANS': 131}
  Time building chain proxies: 1.11, per 1000 atoms: 0.50
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (55.529, 36.341, 91.08, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.
  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 132
        1.23 -     1.43: 334
        1.43 -     1.63: 665
        1.63 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" CE1 HIS A 139 "
       model="   1" pdb=" NE2 HIS A 139 "
    ideal  model  delta    sigma   weight residual
    1.321  1.356 -0.035 1.00e-02 1.00e+04 1.22e+01
  bond model="   1" pdb=" CE1 HIS A 136 "
       model="   1" pdb=" NE2 HIS A 136 "
    ideal  model  delta    sigma   weight residual
    1.321  1.356 -0.035 1.00e-02 1.00e+04 1.20e+01
  bond model="   1" pdb=" CE1 HIS A 135 "
       model="   1" pdb=" NE2 HIS A 135 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.18e+01
  bond model="   1" pdb=" CE1 HIS A  43 "
       model="   1" pdb=" NE2 HIS A  43 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.15e+01
  bond model="   1" pdb=" CD  ARG A 129 "
       model="   1" pdb=" NE  ARG A 129 "
    ideal  model  delta    sigma   weight residual
    1.458  1.505 -0.047 1.40e-02 5.10e+03 1.15e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       96.64 -   103.90: 46
      103.90 -   111.15: 2306
      111.15 -   118.40: 815
      118.40 -   125.66: 868
      125.66 -   132.91: 42
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" CA  ASP A 116 "
        model="   1" pdb=" C   ASP A 116 "
        model="   1" pdb=" N   PRO A 117 "
      ideal   model   delta    sigma   weight residual
     116.90  125.74   -8.84 1.50e+00 4.44e-01 3.47e+01
  angle model="   1" pdb=" C   GLU A  49 "
        model="   1" pdb=" N   TYR A  50 "
        model="   1" pdb=" CA  TYR A  50 "
      ideal   model   delta    sigma   weight residual
     121.70  132.07  -10.37 1.80e+00 3.09e-01 3.32e+01
  angle model="   1" pdb=" CB  ILE A  77 "
        model="   1" pdb=" CG1 ILE A  77 "
        model="   1" pdb=" CD1 ILE A  77 "
      ideal   model   delta    sigma   weight residual
     113.80  125.23  -11.43 2.10e+00 2.27e-01 2.96e+01
  angle model="   1" pdb=" O   GLU A  49 "
        model="   1" pdb=" C   GLU A  49 "
        model="   1" pdb=" N   TYR A  50 "
      ideal   model   delta    sigma   weight residual
     123.00  114.67    8.33 1.60e+00 3.91e-01 2.71e+01
  angle model="   1" pdb=" CA  ASP A  29 "
        model="   1" pdb=" CB  ASP A  29 "
        model="   1" pdb=" CG  ASP A  29 "
      ideal   model   delta    sigma   weight residual
     112.60  117.78   -5.18 1.00e+00 1.00e+00 2.69e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    12.58: 939
       12.58 -    25.17: 62
       25.17 -    37.75: 20
       37.75 -    50.33: 8
       50.33 -    62.92: 3
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" CA  PRO A 117 "
           model="   1" pdb=" C   PRO A 117 "
           model="   1" pdb=" N   ASP A 118 "
           model="   1" pdb=" CA  ASP A 118 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  145.92   34.08     0      5.00e+00 4.00e-02 4.64e+01
  dihedral model="   1" pdb=" CA  THR A  82 "
           model="   1" pdb=" C   THR A  82 "
           model="   1" pdb=" N   THR A  83 "
           model="   1" pdb=" CA  THR A  83 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  146.98   33.02     0      5.00e+00 4.00e-02 4.36e+01
  dihedral model="   1" pdb=" CA  GLU A  84 "
           model="   1" pdb=" C   GLU A  84 "
           model="   1" pdb=" N   LYS A  85 "
           model="   1" pdb=" CA  LYS A  85 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  150.73   29.27     0      5.00e+00 4.00e-02 3.43e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.000 -    0.100: 128
       0.100 -    0.200: 35
       0.200 -    0.300: 8
       0.300 -    0.399: 2
       0.399 -    0.499: 3
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  PHE A  15 "
            model="   1" pdb=" N   PHE A  15 "
            model="   1" pdb=" C   PHE A  15 "
            model="   1" pdb=" CB  PHE A  15 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.01    0.50 2.00e-01 2.50e+01 6.23e+00
  chirality model="   1" pdb=" CA  ILE A  77 "
            model="   1" pdb=" N   ILE A  77 "
            model="   1" pdb=" C   ILE A  77 "
            model="   1" pdb=" CB  ILE A  77 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.43    1.99    0.44 2.00e-01 2.50e+01 4.81e+00
  chirality model="   1" pdb=" CA  THR A  82 "
            model="   1" pdb=" N   THR A  82 "
            model="   1" pdb=" C   THR A  82 "
            model="   1" pdb=" CB  THR A  82 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.53    2.13    0.40 2.00e-01 2.50e+01 4.01e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A 111 "   -0.137 2.00e-02 2.50e+03   5.54e-02 9.22e+01
        model="   1" pdb=" CG  TYR A 111 "    0.013 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A 111 "    0.041 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A 111 "    0.024 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A 111 "   -0.005 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A 111 "    0.015 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A 111 "   -0.017 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A 111 "   -0.064 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A 111 "    0.089 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A 111 "    0.036 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A 111 "   -0.026 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A 111 "    0.032 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  68 "   -0.037 2.00e-02 2.50e+03   5.54e-02 9.21e+01
        model="   1" pdb=" CG  TYR A  68 "   -0.032 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  68 "    0.034 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  68 "   -0.020 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  68 "   -0.030 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  68 "    0.025 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  68 "   -0.036 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  68 "   -0.010 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  68 "    0.120 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  68 "   -0.042 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  68 "   -0.068 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  68 "    0.096 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A 105 "    0.105 2.00e-02 2.50e+03   4.29e-02 5.52e+01
        model="   1" pdb=" CG  TYR A 105 "   -0.003 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A 105 "   -0.020 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A 105 "   -0.028 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A 105 "   -0.009 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A 105 "   -0.001 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A 105 "    0.029 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A 105 "    0.056 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A 105 "   -0.037 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A 105 "   -0.061 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A 105 "   -0.028 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A 105 "   -0.003 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.68 -     2.26: 229
        2.26 -     2.85: 4817
        2.85 -     3.43: 5224
        3.43 -     4.02: 6525
        4.02 -     4.60: 9657
  Nonbonded interactions: 26452
  Sorted by model distance:
  nonbonded model="   1" pdb="HH12 ARG A  21 "
            model="   1" pdb=" OD2 ASP A  29 "
     model   vdw
     1.679 1.850
  nonbonded model="   1" pdb=" H   SER A  76 "
            model="   1" pdb=" H   ILE A  77 "
     model   vdw
     1.774 2.100
  nonbonded model="   1" pdb=" HA  LEU A  53 "
            model="   1" pdb="HD23 LEU A  53 "
     model   vdw
     1.819 2.440
  nonbonded model="   1" pdb=" HZ3 LYS A  63 "
            model="   1" pdb=" OD2 ASP A 103 "
     model   vdw
     1.827 1.850
  nonbonded model="   1" pdb=" H   THR A   5 "
            model="   1" pdb=" OE1 GLU A   8 "
     model   vdw
     1.890 1.850
  ... (remaining 26447 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.
  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 118
        1.23 -     1.43: 353
        1.43 -     1.63: 660
        1.63 -     1.83: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" C   ILE A  30 "
       model="   1" pdb=" N   LEU A  31 "
    ideal  model  delta    sigma   weight residual
    1.329  1.387 -0.058 1.40e-02 5.10e+03 1.69e+01
  bond model="   1" pdb=" CE1 HIS A  43 "
       model="   1" pdb=" NE2 HIS A  43 "
    ideal  model  delta    sigma   weight residual
    1.321  1.361 -0.040 1.00e-02 1.00e+04 1.62e+01
  bond model="   1" pdb=" CE1 HIS A 137 "
       model="   1" pdb=" NE2 HIS A 137 "
    ideal  model  delta    sigma   weight residual
    1.321  1.361 -0.040 1.00e-02 1.00e+04 1.59e+01
  bond model="   1" pdb=" CE1 HIS A 139 "
       model="   1" pdb=" NE2 HIS A 139 "
    ideal  model  delta    sigma   weight residual
    1.321  1.360 -0.039 1.00e-02 1.00e+04 1.54e+01
  bond model="   1" pdb=" CE1 HIS A 135 "
       model="   1" pdb=" NE2 HIS A 135 "
    ideal  model  delta    sigma   weight residual
    1.321  1.360 -0.039 1.00e-02 1.00e+04 1.49e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       90.90 -    99.06: 5
       99.06 -   107.22: 491
      107.22 -   115.38: 2448
      115.38 -   123.55: 956
      123.55 -   131.71: 177
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" CA  ILE A  30 "
        model="   1" pdb=" CB  ILE A  30 "
        model="   1" pdb=" CG1 ILE A  30 "
      ideal   model   delta    sigma   weight residual
     110.40  125.48  -15.08 1.70e+00 3.46e-01 7.86e+01
  angle model="   1" pdb=" CA  LYS A 113 "
        model="   1" pdb=" C   LYS A 113 "
        model="   1" pdb=" N   PRO A 114 "
      ideal   model   delta    sigma   weight residual
     116.90  126.93  -10.03 1.50e+00 4.44e-01 4.47e+01
  angle model="   1" pdb=" C   PRO A 114 "
        model="   1" pdb=" CA  PRO A 114 "
        model="   1" pdb=" HA  PRO A 114 "
      ideal   model   delta    sigma   weight residual
     109.00   90.90   18.10 3.00e+00 1.11e-01 3.64e+01
  angle model="   1" pdb=" CA  VAL A  57 "
        model="   1" pdb=" CB  VAL A  57 "
        model="   1" pdb=" CG2 VAL A  57 "
      ideal   model   delta    sigma   weight residual
     110.40  119.86   -9.46 1.70e+00 3.46e-01 3.10e+01
  angle model="   1" pdb=" N   PRO A 114 "
        model="   1" pdb=" CA  PRO A 114 "
        model="   1" pdb=" C   PRO A 114 "
      ideal   model   delta    sigma   weight residual
     112.10  125.87  -13.77 2.50e+00 1.60e-01 3.03e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    17.98: 980
       17.98 -    35.96: 39
       35.96 -    53.94: 11
       53.94 -    71.92: 1
       71.92 -    89.90: 1
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" CA  HIS A 138 "
           model="   1" pdb=" C   HIS A 138 "
           model="   1" pdb=" N   HIS A 139 "
           model="   1" pdb=" CA  HIS A 139 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  136.31   43.69     0      5.00e+00 4.00e-02 7.64e+01
  dihedral model="   1" pdb=" CA  MET A 128 "
           model="   1" pdb=" C   MET A 128 "
           model="   1" pdb=" N   ARG A 129 "
           model="   1" pdb=" CA  ARG A 129 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  149.66   30.34     0      5.00e+00 4.00e-02 3.68e+01
  dihedral model="   1" pdb=" CA  HIS A 136 "
           model="   1" pdb=" C   HIS A 136 "
           model="   1" pdb=" N   HIS A 137 "
           model="   1" pdb=" CA  HIS A 137 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  150.53   29.47     0      5.00e+00 4.00e-02 3.47e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.001 -    0.133: 140
       0.133 -    0.265: 30
       0.265 -    0.397: 4
       0.397 -    0.530: 1
       0.530 -    0.662: 1
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  PRO A 114 "
            model="   1" pdb=" N   PRO A 114 "
            model="   1" pdb=" C   PRO A 114 "
            model="   1" pdb=" CB  PRO A 114 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.72    2.06    0.66 2.00e-01 2.50e+01 1.09e+01
  chirality model="   1" pdb=" CA  MET A 128 "
            model="   1" pdb=" N   MET A 128 "
            model="   1" pdb=" C   MET A 128 "
            model="   1" pdb=" CB  MET A 128 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.02    0.49 2.00e-01 2.50e+01 5.99e+00
  chirality model="   1" pdb=" CA  LYS A 113 "
            model="   1" pdb=" N   LYS A 113 "
            model="   1" pdb=" C   LYS A 113 "
            model="   1" pdb=" CB  LYS A 113 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.82   -0.31 2.00e-01 2.50e+01 2.38e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  68 "   -0.113 2.00e-02 2.50e+03   9.97e-02 2.98e+02
        model="   1" pdb=" CG  TYR A  68 "   -0.048 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  68 "    0.043 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  68 "   -0.017 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  68 "    0.006 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  68 "    0.061 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  68 "   -0.074 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  68 "   -0.177 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  68 "    0.131 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  68 "   -0.047 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  68 "    0.034 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  68 "    0.202 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  PHE A  15 "    0.139 2.00e-02 2.50e+03   7.84e-02 1.85e+02
        model="   1" pdb=" CG  PHE A  15 "   -0.006 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 PHE A  15 "   -0.065 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 PHE A  15 "   -0.011 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 PHE A  15 "    0.038 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 PHE A  15 "   -0.013 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  PHE A  15 "    0.004 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 PHE A  15 "   -0.173 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 PHE A  15 "   -0.013 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 PHE A  15 "    0.133 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 PHE A  15 "   -0.025 2.00e-02 2.50e+03
        model="   1" pdb=" HZ  PHE A  15 "   -0.008 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  50 "    0.102 2.00e-02 2.50e+03   5.73e-02 9.85e+01
        model="   1" pdb=" CG  TYR A  50 "    0.018 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  50 "   -0.010 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  50 "   -0.024 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  50 "   -0.033 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  50 "   -0.017 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  50 "    0.005 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  50 "    0.130 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  50 "   -0.014 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  50 "   -0.057 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  50 "   -0.073 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  50 "   -0.027 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.84 -     2.39: 875
        2.39 -     2.94: 5043
        2.94 -     3.49: 5035
        3.49 -     4.05: 6359
        4.05 -     4.60: 9396
  Nonbonded interactions: 26708
  Sorted by model distance:
  nonbonded model="   1" pdb=" HZ3 LYS A  10 "
            model="   1" pdb=" OD1 ASP A  23 "
     model   vdw
     1.837 1.850
  nonbonded model="   1" pdb="HG22 ILE A   4 "
            model="   1" pdb=" HG3 ARG A  58 "
     model   vdw
     1.860 2.440
  nonbonded model="   1" pdb=" O   GLY A  96 "
            model="   1" pdb=" H   LEU A  99 "
     model   vdw
     1.873 1.850
  nonbonded model="   1" pdb="HD12 ILE A   4 "
            model="   1" pdb="HD23 LEU A  62 "
     model   vdw
     1.881 2.440
  nonbonded model="   1" pdb=" HZ1 LYS A  63 "
            model="   1" pdb=" HB3 ASP A 103 "
     model   vdw
     1.885 2.270
  ... (remaining 26703 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.
  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 112
        1.23 -     1.43: 355
        1.43 -     1.62: 664
        1.62 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" CE1 HIS A  43 "
       model="   1" pdb=" NE2 HIS A  43 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.16e+01
  bond model="   1" pdb=" CD  ARG A 127 "
       model="   1" pdb=" NE  ARG A 127 "
    ideal  model  delta    sigma   weight residual
    1.458  1.505 -0.047 1.40e-02 5.10e+03 1.11e+01
  bond model="   1" pdb=" CE1 HIS A 137 "
       model="   1" pdb=" NE2 HIS A 137 "
    ideal  model  delta    sigma   weight residual
    1.321  1.354 -0.033 1.00e-02 1.00e+04 1.06e+01
  bond model="   1" pdb=" CE1 HIS A 139 "
       model="   1" pdb=" NE2 HIS A 139 "
    ideal  model  delta    sigma   weight residual
    1.321  1.353 -0.032 1.00e-02 1.00e+04 1.05e+01
  bond model="   1" pdb=" CE1 HIS A 135 "
       model="   1" pdb=" NE2 HIS A 135 "
    ideal  model  delta    sigma   weight residual
    1.321  1.353 -0.032 1.00e-02 1.00e+04 1.04e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       94.34 -   101.77: 7
      101.77 -   109.20: 1088
      109.20 -   116.63: 1936
      116.63 -   124.05: 920
      124.05 -   131.48: 126
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" CA  ILE A  30 "
        model="   1" pdb=" CB  ILE A  30 "
        model="   1" pdb=" CG1 ILE A  30 "
      ideal   model   delta    sigma   weight residual
     110.40  119.60   -9.20 1.70e+00 3.46e-01 2.93e+01
  angle model="   1" pdb=" CA  ASP A  44 "
        model="   1" pdb=" CB  ASP A  44 "
        model="   1" pdb=" CG  ASP A  44 "
      ideal   model   delta    sigma   weight residual
     112.60  107.19    5.41 1.00e+00 1.00e+00 2.92e+01
  angle model="   1" pdb=" C   GLY A  42 "
        model="   1" pdb=" N   HIS A  43 "
        model="   1" pdb=" CA  HIS A  43 "
      ideal   model   delta    sigma   weight residual
     121.70  130.70   -9.00 1.80e+00 3.09e-01 2.50e+01
  angle model="   1" pdb=" ND1 HIS A  43 "
        model="   1" pdb=" CG  HIS A  43 "
        model="   1" pdb=" CD2 HIS A  43 "
      ideal   model   delta    sigma   weight residual
     106.10  110.92   -4.82 1.00e+00 1.00e+00 2.32e+01
  angle model="   1" pdb=" N   SER A  90 "
        model="   1" pdb=" CA  SER A  90 "
        model="   1" pdb=" CB  SER A  90 "
      ideal   model   delta    sigma   weight residual
     110.50  118.47   -7.97 1.70e+00 3.46e-01 2.20e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    12.30: 957
       12.30 -    24.61: 53
       24.61 -    36.91: 11
       36.91 -    49.22: 7
       49.22 -    61.52: 4
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" CA  GLN A 100 "
           model="   1" pdb=" C   GLN A 100 "
           model="   1" pdb=" N   LYS A 101 "
           model="   1" pdb=" CA  LYS A 101 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  154.05   25.95     0      5.00e+00 4.00e-02 2.69e+01
  dihedral model="   1" pdb=" CA  ILE A  51 "
           model="   1" pdb=" C   ILE A  51 "
           model="   1" pdb=" N   PRO A  52 "
           model="   1" pdb=" CA  PRO A  52 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  159.73   20.27     0      5.00e+00 4.00e-02 1.64e+01
  dihedral model="   1" pdb=" CA  ASP A 116 "
           model="   1" pdb=" C   ASP A 116 "
           model="   1" pdb=" N   PRO A 117 "
           model="   1" pdb=" CA  PRO A 117 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  159.91   20.09     0      5.00e+00 4.00e-02 1.61e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.000 -    0.055: 94
       0.055 -    0.111: 51
       0.111 -    0.166: 15
       0.166 -    0.221: 9
       0.221 -    0.277: 7
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  LEU A   9 "
            model="   1" pdb=" N   LEU A   9 "
            model="   1" pdb=" C   LEU A   9 "
            model="   1" pdb=" CB  LEU A   9 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.23    0.28 2.00e-01 2.50e+01 1.91e+00
  chirality model="   1" pdb=" CA  TYR A  89 "
            model="   1" pdb=" N   TYR A  89 "
            model="   1" pdb=" C   TYR A  89 "
            model="   1" pdb=" CB  TYR A  89 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.24    0.27 2.00e-01 2.50e+01 1.84e+00
  chirality model="   1" pdb=" CA  ILE A   4 "
            model="   1" pdb=" N   ILE A   4 "
            model="   1" pdb=" C   ILE A   4 "
            model="   1" pdb=" CB  ILE A   4 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.43    2.69   -0.26 2.00e-01 2.50e+01 1.64e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  PHE A  15 "    0.121 2.00e-02 2.50e+03   5.97e-02 1.07e+02
        model="   1" pdb=" CG  PHE A  15 "    0.003 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 PHE A  15 "   -0.045 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 PHE A  15 "   -0.012 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 PHE A  15 "    0.013 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 PHE A  15 "   -0.024 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  PHE A  15 "    0.027 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 PHE A  15 "   -0.116 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 PHE A  15 "   -0.014 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 PHE A  15 "    0.041 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 PHE A  15 "   -0.065 2.00e-02 2.50e+03
        model="   1" pdb=" HZ  PHE A  15 "    0.070 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  81 "    0.060 2.00e-02 2.50e+03   3.22e-02 3.10e+01
        model="   1" pdb=" CG  TYR A  81 "    0.007 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  81 "   -0.013 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  81 "   -0.007 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  81 "   -0.011 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  81 "   -0.016 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  81 "    0.008 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  81 "    0.072 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  81 "   -0.029 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  81 "   -0.011 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  81 "   -0.022 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  81 "   -0.039 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  68 "   -0.049 2.00e-02 2.50e+03   2.31e-02 1.60e+01
        model="   1" pdb=" CG  TYR A  68 "    0.007 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  68 "    0.017 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  68 "    0.009 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  68 "   -0.011 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  68 "   -0.002 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  68 "   -0.029 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  68 "    0.006 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  68 "    0.043 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  68 "    0.018 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  68 "   -0.018 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  68 "    0.008 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.73 -     2.31: 381
        2.31 -     2.88: 5067
        2.88 -     3.45: 5060
        3.45 -     4.03: 6560
        4.03 -     4.60: 9747
  Nonbonded interactions: 26815
  Sorted by model distance:
  nonbonded model="   1" pdb="HG23 VAL A  41 "
            model="   1" pdb=" H   HIS A  43 "
     model   vdw
     1.734 2.270
  nonbonded model="   1" pdb=" HB3 LEU A   3 "
            model="   1" pdb="HD22 LEU A  53 "
     model   vdw
     1.738 2.440
  nonbonded model="   1" pdb=" OD2 ASP A  74 "
            model="   1" pdb=" HZ2 LYS A  79 "
     model   vdw
     1.758 1.850
  nonbonded model="   1" pdb=" HH  TYR A  12 "
            model="   1" pdb=" OE1 GLU A  55 "
     model   vdw
     1.771 1.850
  nonbonded model="   1" pdb=" OE1 GLU A  16 "
            model="   1" pdb=" HZ2 LYS A  19 "
     model   vdw
     1.840 1.850
  ... (remaining 26810 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.
  Time building chain proxies: 1.12, per 1000 atoms: 0.51
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (61.899, 39.081, 86.022, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.

  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 0.94
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 1.08 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Time building chain proxies: 1.13, per 1000 atoms: 0.51
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (71.583, 39.638, 80.549, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.
  Time building chain proxies: 1.14, per 1000 atoms: 0.51
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (88.974, 57.862, 66.28, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.
  Time building chain proxies: 1.14, per 1000 atoms: 0.51
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (62.575, 37.878, 77.177, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.
  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 97
        1.23 -     1.43: 370
        1.43 -     1.62: 664
        1.62 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" CE1 HIS A 138 "
       model="   1" pdb=" NE2 HIS A 138 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.16e+01
  bond model="   1" pdb=" CE1 HIS A 135 "
       model="   1" pdb=" NE2 HIS A 135 "
    ideal  model  delta    sigma   weight residual
    1.321  1.354 -0.033 1.00e-02 1.00e+04 1.11e+01
  bond model="   1" pdb=" CE1 HIS A 139 "
       model="   1" pdb=" NE2 HIS A 139 "
    ideal  model  delta    sigma   weight residual
    1.321  1.353 -0.032 1.00e-02 1.00e+04 1.05e+01
  bond model="   1" pdb=" CE1 HIS A 137 "
       model="   1" pdb=" NE2 HIS A 137 "
    ideal  model  delta    sigma   weight residual
    1.321  1.353 -0.032 1.00e-02 1.00e+04 1.05e+01
  bond model="   1" pdb=" CE1 HIS A 136 "
       model="   1" pdb=" NE2 HIS A 136 "
    ideal  model  delta    sigma   weight residual
    1.321  1.353 -0.032 1.00e-02 1.00e+04 1.04e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       94.09 -   101.55: 10
      101.55 -   109.01: 956
      109.01 -   116.48: 2057
      116.48 -   123.94: 906
      123.94 -   131.40: 148
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" CA  ILE A  51 "
        model="   1" pdb=" C   ILE A  51 "
        model="   1" pdb=" N   PRO A  52 "
      ideal   model   delta    sigma   weight residual
     116.90  128.61  -11.71 1.50e+00 4.44e-01 6.10e+01
  angle model="   1" pdb=" N   PRO A  52 "
        model="   1" pdb=" CD  PRO A  52 "
        model="   1" pdb=" CG  PRO A  52 "
      ideal   model   delta    sigma   weight residual
     103.20  111.77   -8.57 1.50e+00 4.44e-01 3.27e+01
  angle model="   1" pdb=" O   ILE A  51 "
        model="   1" pdb=" C   ILE A  51 "
        model="   1" pdb=" N   PRO A  52 "
      ideal   model   delta    sigma   weight residual
     123.00  114.00    9.00 1.60e+00 3.91e-01 3.16e+01
  angle model="   1" pdb=" C   ILE A  86 "
        model="   1" pdb=" N   GLY A  87 "
        model="   1" pdb=" CA  GLY A  87 "
      ideal   model   delta    sigma   weight residual
     121.70  131.40   -9.70 1.80e+00 3.09e-01 2.90e+01
  angle model="   1" pdb=" CA  ASP A  44 "
        model="   1" pdb=" CB  ASP A  44 "
        model="   1" pdb=" CG  ASP A  44 "
      ideal   model   delta    sigma   weight residual
     112.60  107.95    4.65 1.00e+00 1.00e+00 2.16e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    11.91: 939
       11.91 -    23.82: 68
       23.82 -    35.73: 14
       35.73 -    47.64: 9
       47.64 -    59.55: 2
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" CA  MET A 128 "
           model="   1" pdb=" C   MET A 128 "
           model="   1" pdb=" N   ARG A 129 "
           model="   1" pdb=" CA  ARG A 129 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  141.57   38.43     0      5.00e+00 4.00e-02 5.91e+01
  dihedral model="   1" pdb=" CA  SER A 130 "
           model="   1" pdb=" C   SER A 130 "
           model="   1" pdb=" N   ILE A 131 "
           model="   1" pdb=" CA  ILE A 131 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  142.87   37.13     0      5.00e+00 4.00e-02 5.51e+01
  dihedral model="   1" pdb=" CA  HIS A 138 "
           model="   1" pdb=" C   HIS A 138 "
           model="   1" pdb=" N   HIS A 139 "
           model="   1" pdb=" CA  HIS A 139 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  143.35   36.65     0      5.00e+00 4.00e-02 5.37e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.002 -    0.108: 142
       0.108 -    0.214: 29
       0.214 -    0.321: 2
       0.321 -    0.427: 1
       0.427 -    0.533: 2
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  ARG A 129 "
            model="   1" pdb=" N   ARG A 129 "
            model="   1" pdb=" C   ARG A 129 "
            model="   1" pdb=" CB  ARG A 129 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    1.98    0.53 2.00e-01 2.50e+01 7.11e+00
  chirality model="   1" pdb=" CA  ILE A  51 "
            model="   1" pdb=" N   ILE A  51 "
            model="   1" pdb=" C   ILE A  51 "
            model="   1" pdb=" CB  ILE A  51 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.43    1.93    0.50 2.00e-01 2.50e+01 6.33e+00
  chirality model="   1" pdb=" CA  VAL A  14 "
            model="   1" pdb=" N   VAL A  14 "
            model="   1" pdb=" C   VAL A  14 "
            model="   1" pdb=" CB  VAL A  14 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.44    2.11    0.33 2.00e-01 2.50e+01 2.70e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  12 "    0.054 2.00e-02 2.50e+03   5.47e-02 8.96e+01
        model="   1" pdb=" CG  TYR A  12 "    0.015 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  12 "    0.015 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  12 "   -0.030 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  12 "   -0.039 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  12 "    0.007 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  12 "    0.015 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  12 "    0.081 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  12 "    0.053 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  12 "   -0.086 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  12 "   -0.111 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  12 "    0.027 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  89 "    0.076 2.00e-02 2.50e+03   5.08e-02 7.74e+01
        model="   1" pdb=" CG  TYR A  89 "    0.019 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  89 "   -0.032 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  89 "    0.005 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  89 "    0.007 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  89 "   -0.030 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  89 "    0.022 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  89 "    0.071 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  89 "   -0.094 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  89 "    0.018 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  89 "    0.024 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  89 "   -0.087 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  PHE A  15 "   -0.030 2.00e-02 2.50e+03   4.88e-02 7.15e+01
        model="   1" pdb=" CG  PHE A  15 "   -0.017 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 PHE A  15 "   -0.019 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 PHE A  15 "    0.028 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 PHE A  15 "    0.032 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 PHE A  15 "   -0.016 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  PHE A  15 "   -0.016 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 PHE A  15 "   -0.055 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 PHE A  15 "    0.088 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 PHE A  15 "    0.098 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 PHE A  15 "   -0.044 2.00e-02 2.50e+03
        model="   1" pdb=" HZ  PHE A  15 "   -0.049 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.72 -     2.30: 331
        2.30 -     2.87: 5013
        2.87 -     3.45: 5054
        3.45 -     4.02: 6480
        4.02 -     4.60: 9747
  Nonbonded interactions: 26625
  Sorted by model distance:
  nonbonded model="   1" pdb=" OE2 GLU A  55 "
            model="   1" pdb="HH21 ARG A  58 "
     model   vdw
     1.723 1.850
  nonbonded model="   1" pdb=" OD1 ASP A  36 "
            model="   1" pdb=" HZ2 LYS A  85 "
     model   vdw
     1.746 1.850
  nonbonded model="   1" pdb="HG22 ILE A  86 "
            model="   1" pdb=" H   GLY A  87 "
     model   vdw
     1.748 2.270
  nonbonded model="   1" pdb=" HZ3 LYS A  10 "
            model="   1" pdb=" OD1 ASP A  23 "
     model   vdw
     1.756 1.850
  nonbonded model="   1" pdb=" H   ALA A 115 "
            model="   1" pdb=" H   ASP A 116 "
     model   vdw
     1.756 2.100
  ... (remaining 26620 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.
  Time building chain proxies: 1.18, per 1000 atoms: 0.53
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (95.125, 61.185, 57.238, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'PCIS': 1, 'PTRANS': 6, 'TRANS': 131}

  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 1.01
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 1.15 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.


  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 0.67
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 0.76 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.


  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 1.00
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 1.12 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 46
        1.23 -     1.43: 420
        1.43 -     1.62: 665
        1.62 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" CE1 HIS A  43 "
       model="   1" pdb=" NE2 HIS A  43 "
    ideal  model  delta    sigma   weight residual
    1.321  1.383 -0.062 1.00e-02 1.00e+04 3.84e+01
  bond model="   1" pdb=" CB  HIS A  43 "
       model="   1" pdb=" CG  HIS A  43 "
    ideal  model  delta    sigma   weight residual
    1.497  1.443  0.054 1.40e-02 5.10e+03 1.47e+01
  bond model="   1" pdb=" CD  ARG A  21 "
       model="   1" pdb=" NE  ARG A  21 "
    ideal  model  delta    sigma   weight residual
    1.458  1.507 -0.049 1.40e-02 5.10e+03 1.24e+01
  bond model="   1" pdb=" CD  ARG A  58 "
       model="   1" pdb=" NE  ARG A  58 "
    ideal  model  delta    sigma   weight residual
    1.458  1.506 -0.048 1.40e-02 5.10e+03 1.19e+01
  bond model="   1" pdb=" NE  ARG A  21 "
       model="   1" pdb=" CZ  ARG A  21 "
    ideal  model  delta    sigma   weight residual
    1.326  1.361 -0.035 1.10e-02 8.26e+03 1.04e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       96.27 -   103.51: 26
      103.51 -   110.75: 2236
      110.75 -   117.99: 854
      117.99 -   125.23: 911
      125.23 -   132.46: 50
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" CA  ASP A  29 "
        model="   1" pdb=" CB  ASP A  29 "
        model="   1" pdb=" CG  ASP A  29 "
      ideal   model   delta    sigma   weight residual
     112.60  118.91   -6.31 1.00e+00 1.00e+00 3.98e+01
  angle model="   1" pdb=" CA  ILE A  51 "
        model="   1" pdb=" C   ILE A  51 "
        model="   1" pdb=" N   PRO A  52 "
      ideal   model   delta    sigma   weight residual
     116.90  126.22   -9.32 1.50e+00 4.44e-01 3.86e+01
  angle model="   1" pdb=" CD2 HIS A  43 "
        model="   1" pdb=" NE2 HIS A  43 "
        model="   1" pdb=" CE1 HIS A  43 "
      ideal   model   delta    sigma   weight residual
     109.00  104.04    4.96 1.00e+00 1.00e+00 2.46e+01
  angle model="   1" pdb=" CD2 LEU A  53 "
        model="   1" pdb=" CG  LEU A  53 "
        model="   1" pdb=" HG  LEU A  53 "
      ideal   model   delta    sigma   weight residual
     108.00  122.72  -14.72 3.00e+00 1.11e-01 2.41e+01
  angle model="   1" pdb=" CA  ASP A  44 "
        model="   1" pdb=" CB  ASP A  44 "
        model="   1" pdb=" CG  ASP A  44 "
      ideal   model   delta    sigma   weight residual
     112.60  107.82    4.78 1.00e+00 1.00e+00 2.28e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    13.81: 966
       13.81 -    27.62: 47
       27.62 -    41.43: 16
       41.43 -    55.24: 2
       55.24 -    69.05: 1
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" CA  HIS A 138 "
           model="   1" pdb=" C   HIS A 138 "
           model="   1" pdb=" N   HIS A 139 "
           model="   1" pdb=" CA  HIS A 139 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  155.33   24.67     0      5.00e+00 4.00e-02 2.43e+01
  dihedral model="   1" pdb=" CA  HIS A 137 "
           model="   1" pdb=" C   HIS A 137 "
           model="   1" pdb=" N   HIS A 138 "
           model="   1" pdb=" CA  HIS A 138 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  155.79   24.21     0      5.00e+00 4.00e-02 2.34e+01
  dihedral model="   1" pdb=" C   THR A  82 "
           model="   1" pdb=" N   THR A  82 "
           model="   1" pdb=" CA  THR A  82 "
           model="   1" pdb=" CB  THR A  82 "
      ideal   model   delta  harmonic     sigma   weight residual
    -122.00 -132.33   10.33     0      2.50e+00 1.60e-01 1.71e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.000 -    0.071: 109
       0.071 -    0.141: 41
       0.141 -    0.212: 16
       0.212 -    0.282: 6
        Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 119
        1.23 -     1.43: 346
        1.43 -     1.62: 666
        1.62 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" CE1 HIS A 138 "
       model="   1" pdb=" NE2 HIS A 138 "
    ideal  model  delta    sigma   weight residual
    1.321  1.360 -0.039 1.00e-02 1.00e+04 1.50e+01
  bond model="   1" pdb=" CE1 HIS A 134 "
       model="   1" pdb=" NE2 HIS A 134 "
    ideal  model  delta    sigma   weight residual
    1.321  1.359 -0.038 1.00e-02 1.00e+04 1.44e+01
  bond model="   1" pdb=" CE1 HIS A 136 "
       model="   1" pdb=" NE2 HIS A 136 "
    ideal  model  delta    sigma   weight residual
    1.321  1.359 -0.038 1.00e-02 1.00e+04 1.42e+01
  bond model="   1" pdb=" CE1 HIS A 139 "
       model="   1" pdb=" NE2 HIS A 139 "
    ideal  model  delta    sigma   weight residual
    1.321  1.359 -0.038 1.00e-02 1.00e+04 1.41e+01
  bond model="   1" pdb=" CE1 HIS A  43 "
       model="   1" pdb=" NE2 HIS A  43 "
    ideal  model  delta    sigma   weight residual
    1.321  1.358 -0.037 1.00e-02 1.00e+04 1.35e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       95.52 -   102.74: 28
      102.74 -   109.97: 2050
      109.97 -   117.19: 991
      117.19 -   124.42: 908
      124.42 -   131.64: 100
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" CA  ILE A  30 "
        model="   1" pdb=" CB  ILE A  30 "
        model="   1" pdb=" CG1 ILE A  30 "
      ideal   model   delta    sigma   weight residual
     110.40  119.74   -9.34 1.70e+00 3.46e-01 3.02e+01
  angle model="   1" pdb=" C   TYR A 111 "
        model="   1" pdb=" CA  TYR A 111 "
        model="   1" pdb=" CB  TYR A 111 "
      ideal   model   delta    sigma   weight residual
     110.10  100.36    9.74 1.90e+00 2.77e-01 2.63e+01
  angle model="   1" pdb=" CA  ASP A   7 "
        model="   1" pdb=" CB  ASP A   7 "
        model="   1" pdb=" CG  ASP A   7 "
      ideal   model   delta    sigma   weight residual
     112.60  107.49    5.11 1.00e+00 1.00e+00 2.61e+01
  angle model="   1" pdb=" C   GLY A  42 "
        model="   1" pdb=" N   HIS A  43 "
        model="   1" pdb=" CA  HIS A  43 "
      ideal   model   delta    sigma   weight residual
     121.70  130.33   -8.63 1.80e+00 3.09e-01 2.30e+01
  angle model="   1" pdb=" CA  LEU A  53 "
        model="   1" pdb=" C   LEU A  53 "
        model="   1" pdb=" N   PRO A  54 "
      ideal   model   delta    sigma   weight residual
     116.90  124.03   -7.13 1.50e+00 4.44e-01 2.26e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    17.49: 988
       17.49 -    34.98: 29
       34.98 -    52.47: 10
       52.47 -    69.96: 2
       69.96 -    87.45: 3
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" CA  HIS A 135 "
           model="   1" pdb=" C   HIS A 135 "
           model="   1" pdb=" N   HIS A 136 "
           model="   1" pdb=" CA  HIS A 136 "
      ideal   model   delta  harmonic     sigma   weight residual
    -180.00 -140.39  -39.61     0      5.00e+00 4.00e-02 6.28e+01
  dihedral model="   1" pdb=" CA  HIS A 136 "
           model="   1" pdb=" C   HIS A 136 "
           model="   1" pdb=" N   HIS A 137 "
           model="   1" pdb=" CA  HIS A 137 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  144.42   35.58     0      5.00e+00 4.00e-02 5.06e+01
  dihedral model="   1" pdb=" CA  HIS A 137 "
           model="   1" pdb=" C   HIS A 137 "
           model="   1" pdb=" N   HIS A 138 "
           model="   1" pdb=" CA  HIS A 138 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  146.31   33.69     0      5.00e+00 4.00e-02 4.54e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.000 -    0.096: 119
       0.096 -    0.193: 45
       0.193 -    0.289: 8
       0.289 -    0.386: 3
      0.282 -    0.352: 4
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  TYR A  91 "
            model="   1" pdb=" N   TYR A  91 "
            model="   1" pdb=" C   TYR A  91 "
            model="   1" pdb=" CB  TYR A  91 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.16    0.35 2.00e-01 2.50e+01 3.11e+00
  chirality model="   1" pdb=" CA  THR A  82 "
            model="   1" pdb=" N   THR A  82 "
            model="   1" pdb=" C   THR A  82 "
            model="   1" pdb=" CB  THR A  82 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.53    2.18    0.35 2.00e-01 2.50e+01 2.99e+00
  chirality model="   1" pdb=" CA  GLU A  75 "
            model="   1" pdb=" N   GLU A  75 "
            model="   1" pdb=" C   GLU A  75 "
            model="   1" pdb=" CB  GLU A  75 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.20    0.31 2.00e-01 2.50e+01 2.39e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  12 "    0.140 2.00e-02 2.50e+03   6.84e-02 1.40e+02
        model="   1" pdb=" CG  TYR A  12 "   -0.013 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  12 "   -0.010 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  12 "   -0.056 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  12 "   -0.026 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  12 "    0.020 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  12 "    0.027 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  12 "    0.057 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  12 "    0.002 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  12 "   -0.136 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  12 "   -0.072 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  12 "    0.066 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  50 "   -0.035 2.00e-02 2.50e+03   4.32e-02 5.61e+01
        model="   1" pdb=" CG  TYR A  50 "   -0.017 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  50 "   -0.013 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  50 "    0.018 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  50 "    0.032 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  50 "    0.001 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  50 "   -0.017 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  50 "   -0.078 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  50 "   -0.039 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  50 "    0.052 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  50 "    0.094 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  50 "    0.002 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  PHE A  45 "   -0.073 2.00e-02 2.50e+03   4.18e-02 5.23e+01
        model="   1" pdb=" CG  PHE A  45 "   -0.022 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 PHE A  45 "    0.027 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 PHE A  45 "    0.004 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 PHE A  45 "   -0.004 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 PHE A  45 "    0.018 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  PHE A  45 "   -0.023 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 PHE A  45 "    0.080 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 PHE A  45 "    0.012 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 PHE A  45 "   -0.011 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 PHE A  45 "    0.055 2.00e-02 2.50e+03
        model="   1" pdb=" HZ  PHE A  45 "   -0.062 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.71 -     2.29: 324
        2.29 -     2.87: 5004
        2.87 -     3.44: 5105
        3.44 -     4.02: 6501
        4.02 -     4.60: 9774
  Nonbonded interactions: 26708
  Sorted by model distance:
  nonbonded model="   1" pdb=" OE2 GLU A  55 "
            model="   1" pdb="HH21 ARG A  58 "
     model   vdw
     1.712 1.850
  nonbonded model="   1" pdb=" OE1 GLU A  55 "
            model="   1" pdb=" HE  ARG A  58 "
     model   vdw
     1.758 1.850
  nonbonded model="   1" pdb=" HZ3 LYS A  10 "
            model="   1" pdb=" OD1 ASP A  23 "
     model   vdw
     1.814 1.850
  nonbonded model="   1" pdb=" HB2 LEU A   3 "
            model="   1" pdb="HD12 LEU A  61 "
     model   vdw
     1.855 2.440
  nonbonded model="   1" pdb="HE21 GLN A  28 "
            model="   1" pdb=" OE2 GLU A  32 "
     model   vdw
     1.857 1.850
  ... (remaining 26703 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.
  0.386 -    0.482: 1
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  LYS A  85 "
            model="   1" pdb=" N   LYS A  85 "
            model="   1" pdb=" C   LYS A  85 "
            model="   1" pdb=" CB  LYS A  85 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.03    0.48 2.00e-01 2.50e+01 5.81e+00
  chirality model="   1" pdb=" CA  VAL A  14 "
            model="   1" pdb=" N   VAL A  14 "
            model="   1" pdb=" C   VAL A  14 "
            model="   1" pdb=" CB  VAL A  14 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.44    2.06    0.38 2.00e-01 2.50e+01 3.59e+00
  chirality model="   1" pdb=" CA  ASP A  95 "
            model="   1" pdb=" N   ASP A  95 "
            model="   1" pdb=" C   ASP A  95 "
            model="   1" pdb=" CB  ASP A  95 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.17    0.34 2.00e-01 2.50e+01 2.96e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  91 "   -0.092 2.00e-02 2.50e+03   6.13e-02 1.13e+02
        model="   1" pdb=" CG  TYR A  91 "   -0.029 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  91 "    0.010 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  91 "    0.015 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  91 "    0.033 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  91 "    0.029 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  91 "   -0.004 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  91 "   -0.151 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  91 "    0.022 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  91 "    0.034 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  91 "    0.072 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  91 "    0.061 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  HIS A 138 "    0.089 2.00e-02 2.50e+03   5.28e-02 5.57e+01
        model="   1" pdb=" CG  HIS A 138 "   -0.077 2.00e-02 2.50e+03
        model="   1" pdb=" ND1 HIS A 138 "   -0.070 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 HIS A 138 "   -0.016 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 HIS A 138 "    0.008 2.00e-02 2.50e+03
        model="   1" pdb=" NE2 HIS A 138 "    0.041 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 HIS A 138 "   -0.012 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 HIS A 138 "    0.037 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  PHE A  15 "   -0.094 2.00e-02 2.50e+03   3.90e-02 4.57e+01
        model="   1" pdb=" CG  PHE A  15 "    0.014 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 PHE A  15 "    0.016 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 PHE A  15 "    0.032 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 PHE A  15 "    0.007 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 PHE A  15 "   -0.007 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  PHE A  15 "   -0.014 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 PHE A  15 "    0.024 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 PHE A  15 "    0.071 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 PHE A  15 "    0.014 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 PHE A  15 "   -0.028 2.00e-02 2.50e+03
        model="   1" pdb=" HZ  PHE A  15 "   -0.033 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.73 -     2.30: 372
        2.30 -     2.88: 5035
        2.88 -     3.45: 5301
        3.45 -     4.03: 6645
        4.03 -     4.60: 9780
  Nonbonded interactions: 27133
  Sorted by model distance:
  nonbonded model="   1" pdb="HG23 VAL A  41 "
            model="   1" pdb=" H   HIS A  43 "
     model   vdw
     1.729 2.270
  nonbonded model="   1" pdb=" OD1 ASP A   7 "
            model="   1" pdb=" HZ1 LYS A  10 "
     model   vdw
     1.786 1.850
  nonbonded model="   1" pdb=" HB  VAL A  18 "
            model="   1" pdb="HH21 ARG A  21 "
     model   vdw
     1.843 2.270
  nonbonded model="   1" pdb=" HB2 LEU A   3 "
            model="   1" pdb="HD22 LEU A  61 "
     model   vdw
     1.860 2.440
  nonbonded model="   1" pdb=" HB3 LYS A  85 "
            model="   1" pdb=" H   ILE A  86 "
     model   vdw
     1.877 2.270
  ... (remaining 27128 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 1.02
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 1.15 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Time building chain proxies: 1.11, per 1000 atoms: 0.50
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (90.829, 60.611, 56.769, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.
  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 117
        1.23 -     1.43: 350
        1.43 -     1.62: 664
        1.62 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" CE1 HIS A 135 "
       model="   1" pdb=" NE2 HIS A 135 "
    ideal  model  delta    sigma   weight residual
    1.321  1.380 -0.059 1.00e-02 1.00e+04 3.43e+01
  bond model="   1" pdb=" C   LEU A  70 "
       model="   1" pdb=" N   ILE A  71 "
    ideal  model  delta    sigma   weight residual
    1.329  1.388 -0.059 1.40e-02 5.10e+03 1.75e+01
  bond model="   1" pdb=" CD  ARG A  21 "
       model="   1" pdb=" NE  ARG A  21 "
    ideal  model  delta    sigma   weight residual
    1.458  1.505 -0.047 1.40e-02 5.10e+03 1.11e+01
  bond model="   1" pdb=" CE1 HIS A 134 "
       model="   1" pdb=" NE2 HIS A 134 "
    ideal  model  delta    sigma   weight residual
    1.321  1.354 -0.033 1.00e-02 1.00e+04 1.11e+01
  bond model="   1" pdb=" CE1 HIS A 139 "
       model="   1" pdb=" NE2 HIS A 139 "
    ideal  model  delta    sigma   weight residual
    1.321  1.354 -0.033 1.00e-02 1.00e+04 1.08e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       95.54 -   103.43: 28
      103.43 -   111.32: 2398
      111.32 -   119.21: 793
      119.21 -   127.09: 832
      127.09 -   134.98: 26
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" CA  ASP A 110 "
        model="   1" pdb=" CB  ASP A 110 "
        model="   1" pdb=" CG  ASP A 110 "
      ideal   model   delta    sigma   weight residual
     112.60  121.06   -8.46 1.00e+00 1.00e+00 7.16e+01
  angle model="   1" pdb=" C   ALA A  69 "
        model="   1" pdb=" CA  ALA A  69 "
        model="   1" pdb=" CB  ALA A  69 "
      ideal   model   delta    sigma   weight residual
     110.50  100.61    9.89 1.50e+00 4.44e-01 4.35e+01
  angle model="   1" pdb=" CA  ASP A 116 "
        model="   1" pdb=" C   ASP A 116 "
        model="   1" pdb=" N   PRO A 117 "
      ideal   model   delta    sigma   weight residual
     116.90  126.15   -9.25 1.50e+00 4.44e-01 3.80e+01
  angle model="   1" pdb=" CA  ILE A  30 "
        model="   1" pdb=" CB  ILE A  30 "
        model="   1" pdb=" CG1 ILE A  30 "
      ideal   model   delta    sigma   weight residual
     110.40  120.05   -9.65 1.70e+00 3.46e-01 3.22e+01
  angle model="   1" pdb=" CB  HIS A 134 "
        model="   1" pdb=" CG  HIS A 134 "
        model="   1" pdb=" ND1 HIS A 134 "
      ideal   model   delta    sigma   weight residual
     122.70  114.54    8.16 1.50e+00 4.44e-01 2.96e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    11.99: 937
       11.99 -    23.98: 66
       23.98 -    35.97: 20
       35.97 -    47.95: 5
       47.95 -    59.94: 4
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" N   LYS A 113 "
           model="   1" pdb=" C   LYS A 113 "
           model="   1" pdb=" CA  LYS A 113 "
           model="   1" pdb=" CB  LYS A 113 "
      ideal   model   delta  harmonic     sigma   weight residual
     122.80  137.93  -15.13     0      2.50e+00 1.60e-01 3.66e+01
  dihedral model="   1" pdb=" CA  ARG A 127 "
           model="   1" pdb=" C   ARG A 127 "
           model="   1" pdb=" N   MET A 128 "
           model="   1" pdb=" CA  MET A 128 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  153.37   26.63     0      5.00e+00 4.00e-02 2.84e+01
  dihedral model="   1" pdb=" N   PHE A  15 "
           model="   1" pdb=" C   PHE A  15 "
           model="   1" pdb=" CA  PHE A  15 "
           model="   1" pdb=" CB  PHE A  15 "
      ideal   model   delta  harmonic     sigma   weight residual
     122.80  135.46  -12.66     0      2.50e+00 1.60e-01 2.56e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.000 -    0.107: 133
       0.107 -    0.214: 31
       0.214 -    0.321: 8
       0.321 -    0.428: 2
       0.428 -    0.535: 2
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  LYS A 113 "
            model="   1" pdb=" N   LYS A 113 "
            model="   1" pdb=" C   LYS A 113 "
            model="   1" pdb=" CB  LYS A 113 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    1.98    0.53 2.00e-01 2.50e+01 7.14e+00
  chirality model="   1" pdb=" CA  PHE A  15 "
            model="   1" pdb=" N   PHE A  15 "
            model="   1" pdb=" C   PHE A  15 "
            model="   1" pdb=" CB  PHE A  15 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.03    0.48 2.00e-01 2.50e+01 5.65e+00
  chirality model="   1" pdb=" CA  LEU A  99 "
            model="   1" pdb=" N   LEU A  99 "
            model="   1" pdb=" C   LEU A  99 "
            model="   1" pdb=" CB  LEU A  99 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.14    0.38 2.00e-01 2.50e+01 3.52e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  PHE A  45 "    0.152 2.00e-02 2.50e+03   6.42e-02 1.23e+02
        model="   1" pdb=" CG  PHE A  45 "   -0.013 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 PHE A  45 "   -0.037 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 PHE A  45 "   -0.034 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 PHE A  45 "   -0.008 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 PHE A  45 "   -0.014 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  PHE A  45 "    0.039 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 PHE A  45 "   -0.073 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 PHE A  45 "   -0.060 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 PHE A  45 "   -0.020 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 PHE A  45 "   -0.037 2.00e-02 2.50e+03
        model="   1" pdb=" HZ  PHE A  45 "    0.105 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A 111 "   -0.076 2.00e-02 2.50e+03   4.67e-02 6.54e+01
        model="   1" pdb=" CG  TYR A 111 "    0.011 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A 111 "    0.029 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A 111 "    0.001 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A 111 "   -0.003 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A 111 "    0.028 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A 111 "   -0.035 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A 111 "   -0.074 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A 111 "    0.062 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A 111 "   -0.024 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A 111 "   -0.003 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A 111 "    0.087 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A 105 "   -0.007 2.00e-02 2.50e+03   4.01e-02 4.82e+01
        model="   1" pdb=" CG  TYR A 105 "    0.053 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A 105 "    0.017 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A 105 "    0.003 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A 105 "   -0.027 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A 105 "   -0.011 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A 105 "    0.013 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A 105 "    0.077 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A 105 "    0.023 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A 105 "   -0.022 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A 105 "   -0.083 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A 105 "   -0.036 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.69 -     2.27: 271
        2.27 -     2.85: 5006
        2.85 -     3.44: 5382
        3.44 -     4.02: 6872
        4.02 -     4.60: 10373
  Nonbonded interactions: 27904
  Sorted by model distance:
  nonbonded model="   1" pdb=" OE2 GLU A  55 "
            model="   1" pdb="HH21 ARG A  58 "
     model   vdw
     1.691 1.850
  nonbonded model="   1" pdb=" OE1 GLU A  55 "
            model="   1" pdb=" HE  ARG A  58 "
     model   vdw
     1.731 1.850
  nonbonded model="   1" pdb=" HZ1 LYS A  63 "
            model="   1" pdb=" OE1 GLU A 133 "
     model   vdw
     1.774 1.850
  nonbonded model="   1" pdb=" HZ3 LYS A  63 "
            model="   1" pdb=" OE2 GLU A 123 "
     model   vdw
     1.786 1.850
  nonbonded model="   1" pdb="HG23 ILE A  30 "
            model="   1" pdb="HD21 LEU A  61 "
     model   vdw
     1.786 2.440
  ... (remaining 27899 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 0.98
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 1.11 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.


  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 0.83
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 0.97 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 107
        1.23 -     1.43: 358
        1.43 -     1.63: 666
        1.63 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" CE1 HIS A  43 "
       model="   1" pdb=" NE2 HIS A  43 "
    ideal  model  delta    sigma   weight residual
    1.321  1.357 -0.036 1.00e-02 1.00e+04 1.29e+01
  bond model="   1" pdb=" CE1 HIS A 138 "
       model="   1" pdb=" NE2 HIS A 138 "
    ideal  model  delta    sigma   weight residual
    1.321  1.356 -0.035 1.00e-02 1.00e+04 1.23e+01
  bond model="   1" pdb=" CE1 HIS A 139 "
       model="   1" pdb=" NE2 HIS A 139 "
    ideal  model  delta    sigma   weight residual
    1.321  1.356 -0.035 1.00e-02 1.00e+04 1.23e+01
  bond model="   1" pdb=" CE1 HIS A 135 "
       model="   1" pdb=" NE2 HIS A 135 "
    ideal  model  delta    sigma   weight residual
    1.321  1.356 -0.035 1.00e-02 1.00e+04 1.20e+01
  bond model="   1" pdb=" CD  ARG A  21 "
       model="   1" pdb=" NE  ARG A  21 "
    ideal  model  delta    sigma   weight residual
    1.458  1.504 -0.046 1.40e-02 5.10e+03 1.09e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       95.94 -   104.41: 84
      104.41 -   112.88: 2564
      112.88 -   121.34: 956
      121.34 -   129.81: 471
      129.81 -   138.27: 2
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" C   HIS A 137 "
        model="   1" pdb=" N   HIS A 138 "
        model="   1" pdb=" CA  HIS A 138 "
      ideal   model   delta    sigma   weight residual
     121.70  138.27  -16.57 1.80e+00 3.09e-01 8.48e+01
  angle model="   1" pdb=" CA  ILE A  51 "
        model="   1" pdb=" C   ILE A  51 "
        model="   1" pdb=" N   PRO A  52 "
      ideal   model   delta    sigma   weight residual
     116.90  128.47  -11.57 1.50e+00 4.44e-01 5.95e+01
  angle model="   1" pdb=" N   HIS A 137 "
        model="   1" pdb=" CA  HIS A 137 "
        model="   1" pdb=" CB  HIS A 137 "
      ideal   model   delta    sigma   weight residual
     110.50  119.85   -9.35 1.70e+00 3.46e-01 3.02e+01
  angle model="   1" pdb=" C   SER A  90 "
        model="   1" pdb=" CA  SER A  90 "
        model="   1" pdb=" CB  SER A  90 "
      ideal   model   delta    sigma   weight residual
     110.10  100.00   10.10 1.90e+00 2.77e-01 2.83e+01
  angle model="   1" pdb=" CA  HIS A 137 "
        model="   1" pdb=" CB  HIS A 137 "
        model="   1" pdb=" CG  HIS A 137 "
      ideal   model   delta    sigma   weight residual
     113.80  119.01   -5.21 1.00e+00 1.00e+00 2.71e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    12.32: 926
       12.32 -    24.64: 78
       24.64 -    36.96: 15
       36.96 -    49.28: 9
       49.28 -    61.60: 4
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" CA  VAL A 126 "
           model="   1" pdb=" C   VAL A 126 "
           model="   1" pdb=" N   ARG A 127 "
           model="   1" pdb=" CA  ARG A 127 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  138.62   41.38     0      5.00e+00 4.00e-02 6.85e+01
  dihedral model="   1" pdb=" CA  ILE A 131 "
           model="   1" pdb=" C   ILE A 131 "
           model="   1" pdb=" N   LEU A 132 "
           model="   1" pdb=" CA  LEU A 132 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  139.08   40.92     0      5.00e+00 4.00e-02 6.70e+01
  dihedral model="   1" pdb=" CA  LEU A  53 "
           model="   1" pdb=" C   LEU A  53 "
           model="   1" pdb=" N   PRO A  54 "
           model="   1" pdb=" CA  PRO A  54 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  140.03   39.97     0      5.00e+00 4.00e-02 6.39e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.000 -    0.091: 117
       0.091 -    0.181: 38
       0.181 -    0.272: 11
       0.272 -    0.363: 6
       0.363 -    0.453: 4
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  VAL A  14 "
            model="   1" pdb=" N   VAL A  14 "
            model="   1" pdb=" C   VAL A  14 "
            model="   1" pdb=" CB  VAL A  14 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.44    1.99    0.45 2.00e-01 2.50e+01 5.14e+00
  chirality model="   1" pdb=" CA  SER A  76 "
            model="   1" pdb=" N   SER A  76 "
            model="   1" pdb=" C   SER A  76 "
            model="   1" pdb=" CB  SER A  76 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.11    0.40 2.00e-01 2.50e+01 4.09e+00
  chirality model="   1" pdb=" CA  THR A  82 "
            model="   1" pdb=" N   THR A  82 "
            model="   1" pdb=" C   THR A  82 "
            model="   1" pdb=" CB  THR A  82 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.53    2.13    0.39 2.00e-01 2.50e+01 3.86e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  91 "   -0.381 2.00e-02 2.50e+03   1.65e-01 8.12e+02
        model="   1" pdb=" CG  TYR A  91 "    0.018 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  91 "    0.056 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  91 "    0.102 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  91 "    0.072 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  91 "    0.026 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  91 "   -0.016 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  91 "   -0.302 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  91 "    0.072 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  91 "    0.209 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  91 "    0.140 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  91 "    0.003 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A 111 "   -0.264 2.00e-02 2.50e+03   1.17e-01 4.14e+02
        model="   1" pdb=" CG  TYR A 111 "    0.076 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A 111 "    0.104 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A 111 "    0.040 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A 111 "   -0.044 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A 111 "    0.014 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A 111 "   -0.031 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A 111 "   -0.019 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A 111 "    0.219 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A 111 "    0.034 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A 111 "   -0.156 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A 111 "    0.027 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  12 "    0.142 2.00e-02 2.50e+03   7.77e-02 1.81e+02
        model="   1" pdb=" CG  TYR A  12 "    0.015 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  12 "   -0.009 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  12 "   -0.042 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  12 "   -0.044 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  12 "   -0.009 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  12 "    0.029 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  12 "    0.152 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  12 "   -0.002 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  12 "   -0.102 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  12 "   -0.116 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  12 "   -0.013 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.67 -     2.26: 248
        2.26 -     2.84: 477
  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 0.98
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 1.10 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

1
        2.84 -     3.43: 5565
        3.43 -     4.01: 6895
        4.01 -     4.60: 10374
  Nonbonded interactions: 27853
  Sorted by model distance:
  nonbonded model="   1" pdb="HG23 VAL A  41 "
            model="   1" pdb=" H   HIS A  43 "
     model   vdw
     1.672 2.270
  nonbonded model="   1" pdb=" OD2 ASP A  36 "
            model="   1" pdb=" HH  TYR A  68 "
     model   vdw
     1.691 1.850
  nonbonded model="   1" pdb=" OE1 GLU A 123 "
            model="   1" pdb=" HZ2 LYS A 125 "
     model   vdw
     1.691 1.850
  nonbonded model="   1" pdb=" HG3 LYS A  63 "
            model="   1" pdb="HD23 LEU A 107 "
     model   vdw
     1.738 2.440
  nonbonded model="   1" pdb=" HD2 LYS A  63 "
            model="   1" pdb="HG22 VAL A 104 "
     model   vdw
     1.745 2.440
  ... (remaining 27848 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.
  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 109
        1.23 -     1.43: 362
        1.43 -     1.63: 660
        1.63 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" CE1 HIS A 134 "
       model="   1" pdb=" NE2 HIS A 134 "
    ideal  model  delta    sigma   weight residual
    1.321  1.362 -0.041 1.00e-02 1.00e+04 1.64e+01
  bond model="   1" pdb=" CE1 HIS A 136 "
       model="   1" pdb=" NE2 HIS A 136 "
    ideal  model  delta    sigma   weight residual
    1.321  1.361 -0.040 1.00e-02 1.00e+04 1.63e+01
  bond model="   1" pdb=" CE1 HIS A 139 "
       model="   1" pdb=" NE2 HIS A 139 "
    ideal  model  delta    sigma   weight residual
    1.321  1.361 -0.040 1.00e-02 1.00e+04 1.61e+01
  bond model="   1" pdb=" CE1 HIS A  43 "
       model="   1" pdb=" NE2 HIS A  43 "
    ideal  model  delta    sigma   weight residual
    1.321  1.361 -0.040 1.00e-02 1.00e+04 1.58e+01
  bond model="   1" pdb=" CE1 HIS A 135 "
       model="   1" pdb=" NE2 HIS A 135 "
    ideal  model  delta    sigma   weight residual
    1.321  1.360 -0.039 1.00e-02 1.00e+04 1.54e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       95.87 -   103.01: 20
      103.01 -   110.16: 2133
      110.16 -   117.30: 925
      117.30 -   124.45: 914
      124.45 -   131.59: 85
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" CA  LYS A 113 "
        model="   1" pdb=" C   LYS A 113 "
        model="   1" pdb=" N   PRO A 114 "
      ideal   model   delta    sigma   weight residual
     116.90  124.66   -7.76 1.50e+00 4.44e-01 2.68e+01
  angle model="   1" pdb=" CA  ILE A  51 "
        model="   1" pdb=" C   ILE A  51 "
        model="   1" pdb=" N   PRO A  52 "
      ideal   model   delta    sigma   weight residual
     116.90  124.47   -7.57 1.50e+00 4.44e-01 2.55e+01
  angle model="   1" pdb=" ND1 HIS A 136 "
        model="   1" pdb=" CG  HIS A 136 "
        model="   1" pdb=" CD2 HIS A 136 "
      ideal   model   delta    sigma   weight residual
     106.10  110.56   -4.46 1.00e+00 1.00e+00 1.99e+01
  angle model="   1" pdb=" ND1 HIS A 134 "
        model="   1" pdb=" CG  HIS A 134 "
        model="   1" pdb=" CD2 HIS A 134 "
      ideal   model   delta    sigma   weight residual
     106.10  110.35   -4.25 1.00e+00 1.00e+00 1.81e+01
  angle model="   1" pdb=" CA  ARG A  21 "
        model="   1" pdb=" C   ARG A  21 "
        model="   1" pdb=" N   PRO A  22 "
      ideal   model   delta    sigma   weight residual
     116.90  123.27   -6.37 1.50e+00 4.44e-01 1.80e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    12.03: 954
       12.03 -    24.05: 53
       24.05 -    36.08: 16
       36.08 -    48.11: 4
       48.11 -    60.14: 5
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" CA  HIS A 138 "
           model="   1" pdb=" C   HIS A 138 "
           model="   1" pdb=" N   HIS A 139 "
           model="   1" pdb=" CA  HIS A 139 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  141.77   38.23     0      5.00e+00 4.00e-02 5.85e+01
  dihedral model="   1" pdb=" CA  HIS A 135 "
           model="   1" pdb=" C   HIS A 135 "
           model="   1" pdb=" N   HIS A 136 "
           model="   1" pdb=" CA  HIS A 136 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  145.65   34.35     0      5.00e+00 4.00e-02 4.72e+01
  dihedral model="   1" pdb=" CA  ASP A  95 "
           model="   1" pdb=" C   ASP A  95 "
           model="   1" pdb=" N   GLY A  96 "
           model="   1" pdb=" CA  GLY A  96 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  147.66   32.34     0      5.00e+00 4.00e-02 4.18e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.000 -    0.070: 106
       0.070 -    0.141: 50
       0.141 -    0.211: 13
       0.211 -    0.281: 5
       0.281 -    0.351: 2
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  PHE A  15 "
            model="   1" pdb=" N   PHE A  15 "
            model="   1" pdb=" C   PHE A  15 "
            model="   1" pdb=" CB  PHE A  15 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.16    0.35 2.00e-01 2.50e+01 3.08e+00
  chirality model="   1" pdb=" CA  HIS A 136 "
            model="   1" pdb=" N   HIS A 136 "
            model="   1" pdb=" C   HIS A 136 "
            model="   1" pdb=" CB  HIS A 136 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.16    0.35 2.00e-01 2.50e+01 3.02e+00
  chirality model="   1" pdb=" CA  LEU A  99 "
            model="   1" pdb=" N   LEU A  99 "
            model="   1" pdb=" C   LEU A  99 "
            model="   1" pdb=" CB  LEU A  99 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.25    0.26 2.00e-01 2.50e+01 1.69e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  81 "   -0.031 2.00e-02 2.50e+03   5.17e-02 8.02e+01
        model="   1" pdb=" CG  TYR A  81 "    0.022 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  81 "   -0.011 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  81 "    0.036 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  81 "    0.008 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  81 "   -0.038 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  81 "    0.004 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  81 "    0.051 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  81 "   -0.044 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  81 "    0.095 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  81 "    0.023 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  81 "   -0.116 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  68 "   -0.031 2.00e-02 2.50e+03   4.53e-02 6.16e+01
        model="   1" pdb=" CG  TYR A  68 "   -0.012 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  68 "   -0.018 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  68 "    0.028 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  68 "    0.030 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  68 "   -0.015 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  68 "    0.011 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  68 "   -0.038 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  68 "   -0.054 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  68 "    0.086 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  68 "    0.075 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  68 "   -0.061 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  91 "    0.068 2.00e-02 2.50e+03   3.38e-02 3.43e+01
        model="   1" pdb=" CG  TYR A  91 "    0.015 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  91 "   -0.010 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  91 "   -0.015 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  91 "   -0.014 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  91 "   -0.010 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  91 "    0.008 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  91 "    0.069 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  91 "   -0.025 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  91 "   -0.038 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  91 "   -0.031 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  91 "   -0.018 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.72 -     2.29: 303
        2.29 -     2.87: 5012
        2.87 -     3.45: 4996
        3.45 -     4.02: 6301
        4.02 -     4.60: 9487
  Nonbonded interactions: 26099
  Sorted by model distance:
  nonbonded model="   1" pdb=" OE2 GLU A  55 "
            model="   1" pdb="HH21 ARG A  58 "
     model   vdw
     1.716 1.850
  nonbonded model="   1" pdb="HG23 VAL A  41 "
            model="   1" pdb=" H   HIS A  43 "
     model   vdw
     1.747 2.270
  nonbonded model="   1" pdb=" OE1 GLU A  55 "
            model="   1" pdb=" HE  ARG A  58 "
     model   vdw
     1.750 1.850
  nonbonded model="   1" pdb=" O   GLY A  96 "
            model="   1" pdb=" H   LEU A  99 "
     model   vdw
     1.878 1.850
  nonbonded model="   1" pdb=" O   VAL A  41 "
            model="   1" pdb=" H   LYS A 113 "
     model   vdw
     1.906 1.850
  ... (remaining 26094 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.
  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 125
        1.23 -     1.43: 340
        1.43 -     1.62: 666
        1.62 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" N   ILE A  30 "
       model="   1" pdb=" CA  ILE A  30 "
    ideal  model  delta    sigma   weight residual
    1.458  1.378  0.080 1.90e-02 2.77e+03 1.76e+01
  bond model="   1" pdb=" CD  ARG A  21 "
       model="   1" pdb=" NE  ARG A  21 "
    ideal  model  delta    sigma   weight residual
    1.458  1.504 -0.046 1.40e-02 5.10e+03 1.10e+01
  bond model="   1" pdb=" CE1 HIS A 139 "
       model="   1" pdb=" NE2 HIS A 139 "
    ideal  model  delta    sigma   weight residual
    1.321  1.354 -0.033 1.00e-02 1.00e+04 1.06e+01
  bond model="   1" pdb=" CE1 HIS A 137 "
       model="   1" pdb=" NE2 HIS A 137 "
    ideal  model  delta    sigma   weight residual
    1.321  1.353 -0.032 1.00e-02 1.00e+04 1.04e+01
  bond model="   1" pdb=" CE1 HIS A 134 "
       model="   1" pdb=" NE2 HIS A 134 "
    ideal  model  delta    sigma   weight residual
    1.321  1.353 -0.032 1.00e-02 1.00e+04 1.03e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       94.07 -   101.61: 11
      101.61 -   109.14: 1057
      109.14 -   116.67: 1946
      116.67 -   124.21: 957
      124.21 -   131.74: 106
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" N   ILE A  30 "
        model="   1" pdb=" CA  ILE A  30 "
        model="   1" pdb=" CB  ILE A  30 "
      ideal   model   delta    sigma   weight residual
     111.50   95.17   16.33 1.70e+00 3.46e-01 9.23e+01
  angle model="   1" pdb=" CA  ILE A   4 "
        model="   1" pdb=" CB  ILE A   4 "
        model="   1" pdb=" CG1 ILE A   4 "
      ideal   model   delta    sigma   weight residual
     110.40  121.87  -11.47 1.70e+00 3.46e-01 4.55e+01
  angle model="   1" pdb=" CA  ILE A  30 "
        model="   1" pdb=" CB  ILE A  30 "
        model="   1" pdb=" CG1 ILE A  30 "
      ideal   model   delta    sigma   weight residual
     110.40  120.72  -10.32 1.70e+00 3.46e-01 3.69e+01
  angle model="   1" pdb=" CA  LYS A 113 "
        model="   1" pdb=" C   LYS A 113 "
        model="   1" pdb=" N   PRO A 114 "
      ideal   model   delta    sigma   weight residual
     116.90  124.56   -7.66 1.50e+00 4.44e-01 2.61e+01
  angle model="   1" pdb=" CA  ASP A 116 "
        model="   1" pdb=" CB  ASP A 116 "
        model="   1" pdb=" CG  ASP A 116 "
      ideal   model   delta    sigma   weight residual
     112.60  117.56   -4.96 1.00e+00 1.00e+00 2.46e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    16.03: 978
       16.03 -    32.07: 38
       32.07 -    48.10: 7
       48.10 -    64.13: 7
       64.13 -    80.17: 2
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" N   ILE A  30 "
           model="   1" pdb=" C   ILE A  30 "
           model="   1" pdb=" CA  ILE A  30 "
           model="   1" pdb=" CB  ILE A  30 "
      ideal   model   delta  harmonic     sigma   weight residual
     123.40  108.93   14.47     0      2.50e+00 1.60e-01 3.35e+01
  dihedral model="   1" pdb=" CA  GLY A 121 "
           model="   1" pdb=" C   GLY A 121 "
           model="   1" pdb=" N   ILE A 122 "
           model="   1" pdb=" CA  ILE A 122 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  152.54   27.46     0      5.00e+00 4.00e-02 3.02e+01
  dihedral model="   1" pdb=" CA  ILE A   4 "
           model="   1" pdb=" C   ILE A   4 "
           model="   1" pdb=" N   THR A   5 "
           model="   1" pdb=" CA  THR A   5 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  154.75   25.25     0      5.00e+00 4.00e-02 2.55e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.000 -    0.122: 149
       0.122 -    0.244: 20
       0.244 -    0.366: 6
       0.366 -    0.488: 0
       0.488 -    0.610: 1
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CG  LEU A   2 "
            model="   1" pdb=" CB  LEU A   2 "
            model="   1" pdb=" CD1 LEU A   2 "
            model="   1" pdb=" CD2 LEU A   2 "
    both_signs  ideal   model   delta    sigma   weight residual
      False     -2.59   -1.98   -0.61 2.00e-01 2.50e+01 9.31e+00
  chirality model="   1" pdb=" CA  ALA A 115 "
            model="   1" pdb=" N   ALA A 115 "
            model="   1" pdb=" C   ALA A 115 "
            model="   1" pdb=" CB  ALA A 115 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.48    2.17    0.32 2.00e-01 2.50e+01 2.50e+00
  chirality model="   1" pdb=" CA  ASP A  29 "
            model="   1" pdb=" N   ASP A  29 "
            model="   1" pdb=" C   ASP A  29 "
            model="   1" pdb=" CB  ASP A  29 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.81   -0.30 2.00e-01 2.50e+01 2.18e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  68 "   -0.086 2.00e-02 2.50e+03   5.17e-02 8.02e+01
        model="   1" pdb=" CG  TYR A  68 "   -0.016 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  68 "    0.013 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  68 "    0.014 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  68 "    0.025 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  68 "    0.022 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  68 "   -0.016 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  68 "   -0.121 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  68 "    0.023 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  68 "    0.028 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  68 "    0.061 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  68 "    0.053 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  91 "    0.062 2.00e-02 2.50e+03   4.25e-02 5.43e+01
        model="   1" pdb=" CG  TYR A  91 "    0.018 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  91 "   -0.027 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  91 "    0.005 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  91 "    0.006 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  91 "   -0.026 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  91 "    0.011 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  91 "    0.060 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  91 "   -0.080 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  91 "    0.017 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  91 "    0.025 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  91 "   -0.071 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  81 "    0.093 2.00e-02 2.50e+03   3.86e-02 4.47e+01
        model="   1" pdb=" CG  TYR A  81 "   -0.042 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  81 "   -0.028 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  81 "   -0.024 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  81 "    0.003 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  81 "   -0.002 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  81 "   -0.027 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  81 "    0.018 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  81 "   -0.039 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  81 "   -0.027 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  81 "    0.044 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  81 "    0.030 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.48 -     2.11: 57
        2.11 -     2.73: 3756
        2.73 -     3.35: 5810
        3.35 -     3.98: 6753
        3.98 -     4.60: 10454
  Nonbonded interactions: 26830
  Sorted by model distance:
  nonbonded model="   1" pdb=" H   ILE A  30 "
            model="   1" pdb=" HB  ILE A  30 "
     model   vdw
     1.482 2.270
  nonbonded model="   1" pdb="HD22 LEU A   2 "
            model="   1" pdb="HG21 ILE A  30 "
     model   vdw
     1.517 2.440
  nonbonded model="   1" pdb=" HG  LEU A   2 "
            model="   1" pdb=" H   ILE A   4 "
     model   vdw
     1.551 2.270
  nonbonded model="   1" pdb="HD21 LEU A   2 "
            model="   1" pdb="HG13 ILE A   4 "
     model   vdw
     1.696 2.440
  nonbonded model="   1" pdb="HG13 VAL A  41 "
            model="   1" pdb=" H   HIS A  43 "
     model   vdw
     1.708 2.270
  ... (remaining 26825 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.
  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 117
        1.23 -     1.43: 350
        1.43 -     1.62: 664
        1.62 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" CE1 HIS A 135 "
       model="   1" pdb=" NE2 HIS A 135 "
    ideal  model  delta    sigma   weight residual
    1.321  1.380 -0.059 1.00e-02 1.00e+04 3.43e+01
  bond model="   1" pdb=" C   LEU A  70 "
       model="   1" pdb=" N   ILE A  71 "
    ideal  model  delta    sigma   weight residual
    1.329  1.388 -0.059 1.40e-02 5.10e+03 1.75e+01
  bond model="   1" pdb=" CD  ARG A  21 "
       model="   1" pdb=" NE  ARG A  21 "
    ideal  model  delta    sigma   weight residual
    1.458  1.505 -0.047 1.40e-02 5.10e+03 1.11e+01
  bond model="   1" pdb=" CE1 HIS A 134 "
       model="   1" pdb=" NE2 HIS A 134 "
    ideal  model  delta    sigma   weight residual
    1.321  1.354 -0.033 1.00e-02 1.00e+04 1.11e+01
  bond model="   1" pdb=" CE1 HIS A 139 "
       model="   1" pdb=" NE2 HIS A 139 "
    ideal  model  delta    sigma   weight residual
    1.321  1.354 -0.033 1.00e-02 1.00e+04 1.08e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       95.54 -   103.43: 28
      103.43 -   111.32: 2398
      111.32 -   119.21: 793
      119.21 -   127.09: 832
      127.09 -   134.98: 26
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" CA  ASP A 110 "
        model="   1" pdb=" CB  ASP A 110 "
        model="   1" pdb=" CG  ASP A 110 "
      ideal   model   delta    sigma   weight residual
     112.60  121.06   -8.46 1.00e+00 1.00e+00 7.16e+01
  angle model="   1" pdb=" C   ALA A  69 "
        model="   1" pdb=" CA  ALA A  69 "
        model="   1" pdb=" CB  ALA A  69 "
      ideal   model   delta    sigma   weight residual
     110.50  100.61    9.89 1.50e+00 4.44e-01 4.35e+01
  angle model="   1" pdb=" CA  ASP A 116 "
        model="   1" pdb=" C   ASP A 116 "
        model="   1" pdb=" N   PRO A 117 "
      ideal   model   delta    sigma   weight residual
     116.90  126.15   -9.25 1.50e+00 4.44e-01 3.80e+01
  angle model="   1" pdb=" CA  ILE A  30 "
        model="   1" pdb=" CB  ILE A  30 "
        model="   1" pdb=" CG1 ILE A  30 "
      ideal   model   delta    sigma   weight residual
     110.40  120.05   -9.65 1.70e+00 3.46e-01 3.22e+01
  angle model="   1" pdb=" CB  HIS A 134 "
        model="   1" pdb=" CG  HIS A 134 "
        model="   1" pdb=" ND1 HIS A 134 "
      ideal   model   delta    sigma   weight residual
     122.70  114.54    8.16 1.50e+00 4.44e-01 2.96e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    11.99: 937
       11.99 -    23.98: 66
       23.98 -    35.97: 20
       35.97 -    47.95: 5
       47.95 -    59.94: 4
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" N   LYS A 113 "
           model="   1" pdb=" C   LYS A 113 "
           model="   1" pdb=" CA  LYS A 113 "
           model="   1" pdb=" CB  LYS A 113 "
      ideal   model   delta  harmonic     sigma   weight residual
     122.80  137.93  -15.13     0      2.50e+00 1.60e-01 3.66e+01
  dihedral model="   1" pdb=" CA  ARG A 127 "
           model="   1" pdb=" C   ARG A 127 "
           model="   1" pdb=" N   MET A 128 "
           model="   1" pdb=" CA  MET A 128 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  153.37   26.63     0      5.00e+00 4.00e-02 2.84e+01
  dihedral model="   1" pdb=" N   PHE A  15 "
           model="   1" pdb=" C   PHE A  15 "
           model="   1" pdb=" CA  PHE A  15 "
           model="   1" pdb=" CB  PHE A  15 "
      ideal   model   delta  harmonic     sigma   weight residual
     122.80  135.46  -12.66     0      2.50e+00 1.60e-01 2.56e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.000 -    0.107: 133
       0.107 -    0.214: 31
       0.214 -    0.321: 8
       0.321 -    0.428: 2
       0.428 -    0.535: 2
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  LYS A 113 "
            model="   1" pdb=" N   LYS A 113 "
            model="   1" pdb=" C   LYS A 113 "
            model="   1" pdb=" CB  LYS A 113 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    1.98    0.53 2.00e-01 2.50e+01 7.14e+00
  chirality model="   1" pdb=" CA  PHE A  15 "
            model="   1" pdb=" N   PHE A  15 "
            model="   1" pdb=" C   PHE A  15 "
            model="   1" pdb=" CB  PHE A  15 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.03    0.48 2.00e-01 2.50e+01 5.65e+00
  chirality model="   1" pdb=" CA  LEU A  99 "
            model="   1" pdb=" N   LEU A  99 "
            model="   1" pdb=" C   LEU A  99 "
            model="   1" pdb=" CB  LEU A  99 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.14    0.38 2.00e-01 2.50e+01 3.52e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  PHE A  45 "    0.152 2.00e-02 2.50e+03   6.42e-02 1.23e+02
        model="   1" pdb=" CG  PHE A  45 "   -0.013 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 PHE A  45 "   -0.037 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 PHE A  45 "   -0.034 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 PHE A  45 "   -0.008 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 PHE A  45 "   -0.014 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  PHE A  45 "    0.039 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 PHE A  45 "   -0.073 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 PHE A  45 "   -0.060 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 PHE A  45 "   -0.020 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 PHE A  45 "   -0.037 2.00e-02 2.50e+03
        model="   1" pdb=" HZ  PHE A  45 "    0.105 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A 111 "   -0.076 2.00e-02 2.50e+03   4.67e-02 6.54e+01
        model="   1" pdb=" CG  TYR A 111 "    0.011 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A 111 "    0.029 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A 111 "    0.001 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A 111 "   -0.003 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A 111 "    0.028 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A 111 "   -0.035 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A 111 "   -0.074 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A 111 "    0.062 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A 111 "   -0.024 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A 111 "   -0.003 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A 111 "    0.087 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A 105 "   -0.007 2.00e-02 2.50e+03   4.01e-02 4.82e+01
        model="   1" pdb=" CG  TYR A 105 "    0.053 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A 105 "    0.017 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A 105 "    0.003 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A 105 "   -0.027 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A 105 "   -0.011 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A 105 "    0.013 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A 105 "    0.077 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A 105 "    0.023 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A 105 "   -0.022 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A 105 "   -0.083 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A 105 "   -0.036 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.69 -     2.27: 271
        2.27 -     2.85: 5006
        2.85 -     3.44: 5382
        3.44 -     4.02: 6872
        4.02 -     4.60: 10373
  Nonbonded interactions: 27904
  Sorted by model distance:
  nonbonded model="   1" pdb=" OE2 GLU A  55 "
            model="   1" pdb="HH21 ARG A  58 "
     model   vdw
     1.691 1.850
  nonbonded model="   1" pdb=" OE1 GLU A  55 "
            model="   1" pdb=" HE  ARG A  58 "
     model   vdw
     1.731 1.850
  nonbonded model="   1" pdb=" HZ1 LYS A  63 "
            model="   1" pdb=" OE1 GLU A 133 "
     model   vdw
     1.774 1.850
  nonbonded model="   1" pdb=" HZ3 LYS A  63 "
            model="   1" pdb=" OE2 GLU A 123 "
     model   vdw
     1.786 1.850
  nonbonded model="   1" pdb="HG23 ILE A  30 "
            model="   1" pdb="HD21 LEU A  61 "
     model   vdw
     1.786 2.440
  ... (remaining 27899 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 0.55
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 0.62 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.


  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 1.00
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 1.13 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.


  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 0.68
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 0.77 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 120
        1.23 -     1.43: 346
        1.43 -     1.63: 665
        1.63 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" C   ALA A 115 "
       model="   1" pdb=" N   ASP A 116 "
    ideal  model  delta    sigma   weight residual
    1.329  1.384 -0.055 1.40e-02 5.10e+03 1.55e+01
  bond model="   1" pdb=" CD  ARG A  21 "
       model="   1" pdb=" NE  ARG A  21 "
    ideal  model  delta    sigma   weight residual
    1.458  1.509 -0.051 1.40e-02 5.10e+03 1.32e+01
  bond model="   1" pdb=" CE1 HIS A  43 "
       model="   1" pdb=" NE2 HIS A  43 "
    ideal  model  delta    sigma   weight residual
    1.321  1.357 -0.036 1.00e-02 1.00e+04 1.32e+01
  bond model="   1" pdb=" CE1 HIS A 139 "
       model="   1" pdb=" NE2 HIS A 139 "
    ideal  model  delta    sigma   weight residual
    1.321  1.356 -0.035 1.00e-02 1.00e+04 1.24e+01
  bond model="   1" pdb=" CE1 HIS A 137 "
       model="   1" pdb=" NE2 HIS A 137 "
    ideal  model  delta    sigma   weight residual
    1.321  1.356 -0.035 1.00e-02 1.00e+04 1.23e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       96.56 -   103.89: 37
      103.89 -   111.21: 2365
      111.21 -   118.53: 781
      118.53 -   125.86: 859
      125.86 -   133.18: 35
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" C   SER A  98 "
        model="   1" pdb=" N   LEU A  99 "
        model="   1" pdb=" CA  LEU A  99 "
      ideal   model   delta    sigma   weight residual
     121.70  133.18  -11.48 1.80e+00 3.09e-01 4.07e+01
  angle model="   1" pdb=" CA  LYS A 113 "
        model="   1" pdb=" C   LYS A 113 "
        model="   1" pdb=" N   PRO A 114 "
      ideal   model   delta    sigma   weight residual
     116.90  126.46   -9.56 1.50e+00 4.44e-01 4.07e+01
  angle model="   1" pdb=" CA  ASP A 116 "
        model="   1" pdb=" C   ASP A 116 "
        model="   1" pdb=" N   PRO A 117 "
      ideal   model   delta    sigma   weight residual
     116.90  126.25   -9.35 1.50e+00 4.44e-01 3.89e+01
  angle model="   1" pdb=" CA  ASP A 116 "
        model="   1" pdb=" CB  ASP A 116 "
        model="   1" pdb=" CG  ASP A 116 "
      ideal   model   delta    sigma   weight residual
     112.60  118.27   -5.67 1.00e+00 1.00e+00 3.22e+01
  angle model="   1" pdb=" CA  PRO A 114 "
        model="   1" pdb=" C   PRO A 114 "
        model="   1" pdb=" N   ALA A 115 "
      ideal   model   delta    sigma   weight residual
     116.20  127.32  -11.12 2.00e+00 2.50e-01 3.09e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    10.02: 902
       10.02 -    20.03: 94
       20.03 -    30.05: 21
       30.05 -    40.07: 10
       40.07 -    50.09: 5
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" CA  ILE A  51 "
           model="   1" pdb=" C   ILE A  51 "
           model="   1" pdb=" N   PRO A  52 "
           model="   1" pdb=" CA  PRO A  52 "
      ideal   model   delta  harmonic     sigma   weight residual
    -180.00 -147.27  -32.73     0      5.00e+00 4.00e-02 4.28e+01
  dihedral model="   1" pdb=" CA  LEU A 119 "
           model="   1" pdb=" C   LEU A 119 "
           model="   1" pdb=" N   GLU A 120 "
           model="   1" pdb=" CA  GLU A 120 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  147.80   32.20     0      5.00e+00 4.00e-02 4.15e+01
  dihedral model="   1" pdb=" N   LEU A   3 "
           model="   1" pdb=" C   LEU A   3 "
           model="   1" pdb=" CA  LEU A   3 "
           model="   1" pdb=" CB  LEU A   3 "
      ideal   model   delta  harmonic     sigma   weight residual
     122.80  136.65  -13.85     0      2.50e+00 1.60e-01 3.07e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.000 -    0.114: 140
       0.114 -    0.227: 31
       0.227 -    0.341: 3
       0.341 -    0.454: 1
       0.454 -    0.568: 1
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  LEU A   3 "
            model="   1" pdb=" N   LEU A   3 "
            model="   1" pdb=" C   LEU A   3 "
            model="   1" pdb=" CB  LEU A   3 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    1.94    0.57 2.00e-01 2.50e+01 8.06e+00
  chirality model="   1" pdb=" CA  ASP A 116 "
            model="   1" pdb=" N   ASP A 116 "
            model="   1" pdb=" C   ASP A 116 "
            model="   1" pdb=" CB  ASP A 116 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.13    0.38 2.00e-01 2.50e+01 3.53e+00
  chirality model="   1" pdb=" CA  PRO A  52 "
            model="   1" pdb=" N   PRO A  52 "
            model="   1" pdb=" C   PRO A  52 "
            model="   1" pdb=" CB  PRO A  52 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.72    2.41    0.31 2.00e-01 2.50e+01 2.33e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A 105 "   -0.138 2.00e-02 2.50e+03   6.31e-02 1.20e+02
        model="   1" pdb=" CG  TYR A 105 "    0.000 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A 105 "    0.044 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A 105 "    0.015 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A 105 "   -0.002 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A 105 "    0.029 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A 105 "   -0.017 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A 105 "   -0.097 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A 105 "    0.104 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A 105 "    0.016 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A 105 "   -0.023 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A 105 "    0.068 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  81 "    0.106 2.00e-02 2.50e+03   4.57e-02 6.27e+01
        model="   1" pdb=" CG  TYR A  81 "    0.009 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  81 "   -0.028 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  81 "   -0.017 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  81 "   -0.003 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  81 "   -0.016 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  81 "    0.010 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  81 "    0.072 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  81 "   -0.070 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  81 "   -0.036 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  81 "    0.004 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  81 "   -0.032 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" C   ILE A  51 "   -0.091 5.00e-02 4.00e+02   1.37e-01 2.98e+01
        model="   1" pdb=" N   PRO A  52 "    0.236 5.00e-02 4.00e+02
        model="   1" pdb=" CA  PRO A  52 "   -0.076 5.00e-02 4.00e+02
        model="   1" pdb=" CD  PRO A  52 "   -0.069 5.00e-02 4.00e+02
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.81 -     2.37: 633
        2.37 -     2.92: 5057
        2.92 -     3.48: 4931
        3.48 -     4.04: 6263
        4.04 -     4.60: 9276
  Nonbonded interactions: 26160
  Sorted by model distance:
  nonbonded model="   1" pdb=" HZ3 LYS A  10 "
            model="   1" pdb=" OD1 ASP A  23 "
     model   vdw
     1.808 1.850
  nonbonded model="   1" pdb="HE21 GLN A  28 "
            model="   1" pdb=" OE2 GLU A  32 "
     model   vdw
     1.857 1.850
  nonbonded model="   1" pdb=" O   GLU A  84 "
            model="   1" pdb=" H   TYR A  91 "
     model   vdw
     1.919 1.850
  nonbonded model="   1" pdb=" O   ILE A 108 "
            model="   1" pdb=" H   TYR A 111 "
     model   vdw
     1.933 1.850
  nonbonded model="   1" pdb="HG23 VAL A  41 "
            model="   1" pdb=" H   HIS A  43 "
     model   vdw
     1.954 2.270
  ... (remaining 26155 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 0.93
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 1.05 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 121
        1.23 -     1.43: 344
        1.43 -     1.62: 666
        1.62 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" CE1 HIS A 135 "
       model="   1" pdb=" NE2 HIS A 135 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.17e+01
  bond model="   1" pdb=" CE1 HIS A 138 "
       model="   1" pdb=" NE2 HIS A 138 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.16e+01
  bond model="   1" pdb=" CE1 HIS A 139 "
       model="   1" pdb=" NE2 HIS A 139 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.15e+01
  bond model="   1" pdb=" CE1 HIS A 136 "
       model="   1" pdb=" NE2 HIS A 136 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.15e+01
  bond model="   1" pdb=" CE1 HIS A 134 "
       model="   1" pdb=" NE2 HIS A 134 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.14e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       96.82 -   103.71: 34
      103.71 -   110.60: 2207
      110.60 -   117.49: 852
      117.49 -   124.38: 895
      124.38 -   131.27: 89
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" CA  ASP A  88 "
        model="   1" pdb=" CB  ASP A  88 "
        model="   1" pdb=" CG  ASP A  88 "
      ideal   model   delta    sigma   weight residual
     112.60  104.36    8.24 1.00e+00 1.00e+00 6.78e+01
  angle model="   1" pdb=" CA  ASP A 116 "
        model="   1" pdb=" C   ASP A 116 "
        model="   1" pdb=" N   PRO A 117 "
      ideal   model   delta    sigma   weight residual
     116.90  126.02   -9.12 1.50e+00 4.44e-01 3.70e+01
  angle model="   1" pdb=" CA  LYS A 101 "
        model="   1" pdb=" C   LYS A 101 "
        model="   1" pdb=" N   PRO A 102 "
      ideal   model   delta    sigma   weight residual
     116.90  124.86   -7.96 1.50e+00 4.44e-01 2.81e+01
  angle model="   1" pdb=" CA  THR A   5 "
        model="   1" pdb=" C   THR A   5 "
        model="   1" pdb=" N   PRO A   6 "
      ideal   model   delta    sigma   weight residual
     116.90  123.98   -7.08 1.50e+00 4.44e-01 2.23e+01
  angle model="   1" pdb=" C   ALA A 115 "
        model="   1" pdb=" CA  ALA A 115 "
        model="   1" pdb=" CB  ALA A 115 "
      ideal   model   delta    sigma   weight residual
     110.50  103.53    6.97 1.50e+00 4.44e-01 2.16e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    12.00: 943
       12.00 -    24.00: 59
       24.00 -    35.99: 17
       35.99 -    47.99: 7
       47.99 -    59.99: 6
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" CA  ILE A 122 "
           model="   1" pdb=" C   ILE A 122 "
           model="   1" pdb=" N   GLU A 123 "
           model="   1" pdb=" CA  GLU A 123 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  148.69   31.31     0      5.00e+00 4.00e-02 3.92e+01
  dihedral model="   1" pdb=" CA  TYR A  91 "
           model="   1" pdb=" C   TYR A  91 "
           model="   1" pdb=" N   THR A  92 "
           model="   1" pdb=" CA  THR A  92 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  154.32   25.68     0      5.00e+00 4.00e-02 2.64e+01
  dihedral model="   1" pdb=" N   LYS A 113 "
           model="   1" pdb=" C   LYS A 113 "
           model="   1" pdb=" CA  LYS A 113 "
           model="   1" pdb=" CB  LYS A 113 "
      ideal   model   delta  harmonic     sigma   weight residual
     122.80  132.78   -9.98     0      2.50e+00 1.60e-01 1.59e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.000 -    0.072: 101
       0.072 -    0.144: 47
       0.144 -    0.216: 14
       0.216 -    0.287: 9
       0.287 -    0.359: 5
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  LYS A 113 "
            model="   1" pdb=" N   LYS A 113 "
            model="   1" pdb=" C   LYS A 113 "
            model="   1" pdb=" CB  LYS A 113 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.15    0.36 2.00e-01 2.50e+01 3.22e+00
  chirality model="   1" pdb=" CB  ILE A  78 "
            model="   1" pdb=" CA  ILE A  78 "
            model="   1" pdb=" CG1 ILE A  78 "
            model="   1" pdb=" CG2 ILE A  78 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.64    2.29    0.36 2.00e-01 2.50e+01 3.19e+00
  chirality model="   1" pdb=" CG  LEU A  26 "
            model="   1" pdb=" CB  LEU A  26 "
            model="   1" pdb=" CD1 LEU A  26 "
            model="   1" pdb=" CD2 LEU A  26 "
    both_signs  ideal   model   delta    sigma   weight residual
      False     -2.59   -2.27   -0.32 2.00e-01 2.50e+01 2.57e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  68 "    0.187 2.00e-02 2.50e+03   7.27e-02 1.59e+02
        model="   1" pdb=" CG  TYR A  68 "   -0.012 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  68 "   -0.039 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  68 "   -0.047 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  68 "   -0.009 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  68 "   -0.013 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  68 "    0.008 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  68 "    0.099 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  68 "   -0.077 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  68 "   -0.094 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  68 "   -0.000 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  68 "   -0.005 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  PHE A  15 "   -0.119 2.00e-02 2.50e+03   6.84e-02 1.41e+02
        model="   1" pdb=" CG  PHE A  15 "   -0.035 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 PHE A  15 "    0.006 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 PHE A  15 "    0.043 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 PHE A  15 "    0.030 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 PHE A  15 "   -0.005 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  PHE A  15 "   -0.038 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 PHE A  15 "    0.018 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 PHE A  15 "    0.128 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 PHE A  15 "    0.091 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 PHE A  15 "   -0.014 2.00e-02 2.50e+03
        model="   1" pdb=" HZ  PHE A  15 "   -0.106 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  81 "    0.081 2.00e-02 2.50e+03   6.71e-02 1.35e+02
        model="   1" pdb=" CG  TYR A  81 "    0.023 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  81 "    0.010 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  81 "   -0.050 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  81 "   -0.020 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  81 "    0.038 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  81 "    0.028 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  81 "   -0.003 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  81 "    0.020 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  81 "   -0.160 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  81 "   -0.071 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  81 "    0.104 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.74 -     2.31: 414
        2.31 -     2.88: 5133
        2.88 -     3.46: 5172
        3.46 -     4.03: 6463
        4.03 -     4.60: 9782
  Nonbonded interactions: 26964
  Sorted by model distance:
  nonbonded model="   1" pdb="HH22 ARG A  21 "
            model="   1" pdb=" HG  LEU A  62 "
     model   vdw
     1.740 2.270
  nonbonded model="   1" pdb=" HB3 LEU A   3 "
            model="   1" pdb="HG23 THR A  34 "
     model   vdw
     1.752 2.440
  nonbonded model="   1" pdb=" OD2 ASP A  95 "
            model="   1" pdb=" HZ1 LYS A 101 "
     model   vdw
     1.802 1.850
  nonbonded model="   1" pdb="HG22 ILE A  78 "
            model="   1" pdb=" H   GLY A  80 "
     model   vdw
     1.812 2.270
  nonbonded model="   1" pdb=" O   ILE A  78 "
            model="   1" pdb=" H   TYR A  81 "
     model   vdw
     1.851 1.850
  ... (remaining 26959 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 0.88
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 0.96 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 115
        1.23 -     1.43: 355
        1.43 -     1.62: 661
        1.62 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" CA  ILE A  78 "
       model="   1" pdb=" C   ILE A  78 "
    ideal  model  delta    sigma   weight residual
    1.525  1.406  0.119 2.10e-02 2.27e+03 3.20e+01
  bond model="   1" pdb=" CE1 HIS A 139 "
       model="   1" pdb=" NE2 HIS A 139 "
    ideal  model  delta    sigma   weight residual
    1.321  1.357 -0.036 1.00e-02 1.00e+04 1.28e+01
  bond model="   1" pdb=" CE1 HIS A 135 "
       model="   1" pdb=" NE2 HIS A 135 "
    ideal  model  delta    sigma   weight residual
    1.321  1.356 -0.035 1.00e-02 1.00e+04 1.23e+01
  bond model="   1" pdb=" CE1 HIS A 138 "
       model="   1" pdb=" NE2 HIS A 138 "
    ideal  model  delta    sigma   weight residual
    1.321  1.356 -0.035 1.00e-02 1.00e+04 1.22e+01
  bond model="   1" pdb=" CE1 HIS A 136 "
       model="   1" pdb=" NE2 HIS A 136 "
    ideal  model  delta    sigma   weight residual
    1.321  1.356 -0.035 1.00e-02 1.00e+04 1.19e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       88.97 -    97.36: 4
       97.36 -   105.75: 149
      105.75 -   114.14: 2723
      114.14 -   122.52: 886
      122.52 -   130.91: 315
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" CA  ILE A  78 "
        model="   1" pdb=" CB  ILE A  78 "
        model="   1" pdb=" CG2 ILE A  78 "
      ideal   model   delta    sigma   weight residual
     110.50  124.08  -13.58 1.70e+00 3.46e-01 6.38e+01
  angle model="   1" pdb=" CB  GLU A  16 "
        model="   1" pdb=" CG  GLU A  16 "
        model="   1" pdb=" CD  GLU A  16 "
      ideal   model   delta    sigma   weight residual
     112.60  125.47  -12.87 1.70e+00 3.46e-01 5.73e+01
  angle model="   1" pdb=" CB  ILE A  71 "
        model="   1" pdb=" CA  ILE A  71 "
        model="   1" pdb=" HA  ILE A  71 "
      ideal   model   delta    sigma   weight residual
     109.00   88.97   20.03 3.00e+00 1.11e-01 4.46e+01
  angle model="   1" pdb=" N   ILE A  78 "
        model="   1" pdb=" CA  ILE A  78 "
        model="   1" pdb=" CB  ILE A  78 "
      ideal   model   delta    sigma   weight residual
     111.50  122.24  -10.74 1.70e+00 3.46e-01 3.99e+01
  angle model="   1" pdb=" CA  MET A   1 "
        model="   1" pdb=" C   MET A   1 "
        model="   1" pdb=" N   LEU A   2 "
      ideal   model   delta    sigma   weight residual
     116.20  128.74  -12.54 2.00e+00 2.50e-01 3.93e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    22.38: 999
       22.38 -    44.76: 25
       44.76 -    67.14: 6
       67.14 -    89.52: 1
       89.52 -   111.90: 1
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" CA  HIS A 134 "
           model="   1" pdb=" C   HIS A 134 "
           model="   1" pdb=" N   HIS A 135 "
           model="   1" pdb=" CA  HIS A 135 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00   68.10  111.90     0      5.00e+00 4.00e-02 5.01e+02
  dihedral model="   1" pdb=" CA  GLU A 133 "
           model="   1" pdb=" C   GLU A 133 "
           model="   1" pdb=" N   HIS A 134 "
           model="   1" pdb=" CA  HIS A 134 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  133.74   46.26     0      5.00e+00 4.00e-02 8.56e+01
  dihedral model="   1" pdb=" C   ILE A  71 "
           model="   1" pdb=" N   ILE A  71 "
           model="   1" pdb=" CA  ILE A  71 "
           model="   1" pdb=" CB  ILE A  71 "
      ideal   model   delta  harmonic     sigma   weight residual
    -122.00 -144.87   22.87     0      2.50e+00 1.60e-01 8.37e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.000 -    0.165: 156
       0.165 -    0.329: 16
       0.329 -    0.494: 3
       0.494 -    0.659: 0
       0.659 -    0.823: 1
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  ILE A  71 "
            model="   1" pdb=" N   ILE A  71 "
            model="   1" pdb=" C   ILE A  71 "
            model="   1" pdb=" CB  ILE A  71 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.43    1.61    0.82 2.00e-01 2.50e+01 1.69e+01
  chirality model="   1" pdb=" CA  HIS A 134 "
            model="   1" pdb=" N   HIS A 134 "
            model="   1" pdb=" C   HIS A 134 "
            model="   1" pdb=" CB  HIS A 134 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.05    0.46 2.00e-01 2.50e+01 5.39e+00
  chirality model="   1" pdb=" CB  ILE A  71 "
            model="   1" pdb=" CA  ILE A  71 "
            model="   1" pdb=" CG1 ILE A  71 "
            model="   1" pdb=" CG2 ILE A  71 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.64    2.20    0.45 2.00e-01 2.50e+01 4.97e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  PHE A  15 "    0.163 2.00e-02 2.50e+03   7.02e-02 1.48e+02
        model="   1" pdb=" CG  PHE A  15 "    0.005 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 PHE A  15 "   -0.052 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 PHE A  15 "   -0.026 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 PHE A  15 "    0.010 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 PHE A  15 "   -0.015 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  PHE A  15 "    0.029 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 PHE A  15 "   -0.132 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 PHE A  15 "   -0.055 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 PHE A  15 "    0.037 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 PHE A  15 "   -0.036 2.00e-02 2.50e+03
        model="   1" pdb=" HZ  PHE A  15 "    0.072 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  HIS A 135 "   -0.115 2.00e-02 2.50e+03   6.81e-02 9.27e+01
        model="   1" pdb=" CG  HIS A 135 "    0.099 2.00e-02 2.50e+03
        model="   1" pdb=" ND1 HIS A 135 "    0.091 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 HIS A 135 "    0.020 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 HIS A 135 "   -0.010 2.00e-02 2.50e+03
        model="   1" pdb=" NE2 HIS A 135 "   -0.049 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 HIS A 135 "    0.014 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 HIS A 135 "   -0.050 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  12 "    0.138 2.00e-02 2.50e+03   5.53e-02 9.17e+01
        model="   1" pdb=" CG  TYR A  12 "   -0.089 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  12 "   -0.045 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  12 "   -0.031 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  12 "    0.008 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  12 "   -0.008 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  12 "   -0.008 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  12 "    0.032 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  12 "   -0.051 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  12 "   -0.007 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  12 "    0.054 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  12 "    0.007 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.52 -     2.14: 93
        2.14 -     2.75: 4002
        2.75 -     3.37: 5843
        3.37 -     3.98: 6958
        3.98 -     4.60: 10357
  Nonbonded interactions: 27253
  Sorted by model distance:
  nonbonded model="   1" pdb="HD22 LEU A   9 "
            model="   1" pdb="HG21 VAL A  18 "
     model   vdw
     1.522 2.440
  nonbonded model="   1" pdb=" HZ1 LYS A  79 "
            model="   1" pdb=" OD2 ASP A  95 "
     model   vdw
     1.648 1.850
  nonbonded model="   1" pdb=" HB3 LEU A   3 "
            model="   1" pdb="HD22 LEU A  53 "
     model   vdw
     1.675 2.440
  nonbonded model="   1" pdb="HD13 LEU A   9 "
            model="   1" pdb="HD11 LEU A  26 "
     model   vdw
     1.699 2.440
  nonbonded model="   1" pdb=" H   SER A  17 "
            model="   1" pdb=" HG3 GLN A  66 "
     model   vdw
     1.740 2.270
  ... (remaining 27248 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 1.09
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 1.22 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.


  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 0.98
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 1.12 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 120
        1.23 -     1.43: 346
        1.43 -     1.63: 665
        1.63 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" CE1 HIS A 134 "
       model="   1" pdb=" NE2 HIS A 134 "
    ideal  model  delta    sigma   weight residual
    1.321  1.359 -0.038 1.00e-02 1.00e+04 1.46e+01
  bond model="   1" pdb=" CE1 HIS A 137 "
       model="   1" pdb=" NE2 HIS A 137 "
    ideal  model  delta    sigma   weight residual
    1.321  1.358 -0.037 1.00e-02 1.00e+04 1.40e+01
  bond model="   1" pdb=" CE1 HIS A 135 "
       model="   1" pdb=" NE2 HIS A 135 "
    ideal  model  delta    sigma   weight residual
    1.321  1.358 -0.037 1.00e-02 1.00e+04 1.36e+01
  bond model="   1" pdb=" CE1 HIS A 139 "
       model="   1" pdb=" NE2 HIS A 139 "
    ideal  model  delta    sigma   weight residual
    1.321  1.358 -0.037 1.00e-02 1.00e+04 1.35e+01
  bond model="   1" pdb=" CE1 HIS A 138 "
       model="   1" pdb=" NE2 HIS A 138 "
    ideal  model  delta    sigma   weight residual
    1.321  1.358 -0.037 1.00e-02 1.00e+04 1.34e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       97.24 -   104.30: 45
      104.30 -   111.37: 2385
      111.37 -   118.44: 749
      118.44 -   125.51: 855
      125.51 -   132.57: 43
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" CA  ASP A 116 "
        model="   1" pdb=" C   ASP A 116 "
        model="   1" pdb=" N   PRO A 117 "
      ideal   model   delta    sigma   weight residual
     116.90  129.90  -13.00 1.50e+00 4.44e-01 7.51e+01
  angle model="   1" pdb=" CA  LYS A 113 "
        model="   1" pdb=" C   LYS A 113 "
        model="   1" pdb=" N   PRO A 114 "
      ideal   model   delta    sigma   weight residual
     116.90  126.62   -9.72 1.50e+00 4.44e-01 4.20e+01
  angle model="   1" pdb=" O   ASP A 116 "
        model="   1" pdb=" C   ASP A 116 "
        model="   1" pdb=" N   PRO A 117 "
      ideal   model   delta    sigma   weight residual
     123.00  114.81    8.19 1.60e+00 3.91e-01 2.62e+01
  angle model="   1" pdb=" CA  PHE A  45 "
        model="   1" pdb=" CB  PHE A  45 "
        model="   1" pdb=" CG  PHE A  45 "
      ideal   model   delta    sigma   weight residual
     113.80  108.72    5.08 1.00e+00 1.00e+00 2.58e+01
  angle model="   1" pdb=" CA  PRO A 114 "
        model="   1" pdb=" C   PRO A 114 "
        model="   1" pdb=" N   ALA A 115 "
      ideal   model   delta    sigma   weight residual
     116.20  125.77   -9.57 2.00e+00 2.50e-01 2.29e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    11.98: 930
       11.98 -    23.96: 70
       23.96 -    35.94: 22
       35.94 -    47.92: 5
       47.92 -    59.90: 5
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" CA  SER A  90 "
           model="   1" pdb=" C   SER A  90 "
           model="   1" pdb=" N   TYR A  91 "
           model="   1" pdb=" CA  TYR A  91 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  143.64   36.36     0      5.00e+00 4.00e-02 5.29e+01
  dihedral model="   1" pdb=" CA  PRO A 117 "
           model="   1" pdb=" C   PRO A 117 "
           model="   1" pdb=" N   ASP A 118 "
           model="   1" pdb=" CA  ASP A 118 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  149.64   30.36     0      5.00e+00 4.00e-02 3.69e+01
  dihedral model="   1" pdb=" CA  ARG A  21 "
           model="   1" pdb=" C   ARG A  21 "
           model="   1" pdb=" N   PRO A  22 "
           model="   1" pdb=" CA  PRO A  22 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  154.37   25.63     0      5.00e+00 4.00e-02 2.63e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.001 -    0.099: 129
       0.099 -    0.198: 37
       0.198 -    0.297: 7
       0.297 -    0.396: 2
       0.396 -    0.495: 1
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  ASP A 116 "
            model="   1" pdb=" N   ASP A 116 "
            model="   1" pdb=" C   ASP A 116 "
            model="   1" pdb=" CB  ASP A 116 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.02    0.49 2.00e-01 2.50e+01 6.12e+00
  chirality model="   1" pdb=" CA  LYS A  79 "
            model="   1" pdb=" N   LYS A  79 "
            model="   1" pdb=" C   LYS A  79 "
            model="   1" pdb=" CB  LYS A  79 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.16    0.35 2.00e-01 2.50e+01 3.14e+00
  chirality model="   1" pdb=" CA  HIS A  43 "
            model="   1" pdb=" N   HIS A  43 "
            model="   1" pdb=" C   HIS A  43 "
            model="   1" pdb=" CB  HIS A  43 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.16    0.35 2.00e-01 2.50e+01 3.06e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A 105 "   -0.281 2.00e-02 2.50e+03   1.26e-01 4.78e+02
        model="   1" pdb=" CG  TYR A 105 "   -0.006 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A 105 "    0.085 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A 105 "    0.035 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A 105 "   -0.003 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A 105 "    0.055 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A 105 "   -0.034 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A 105 "   -0.193 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A 105 "    0.205 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A 105 "    0.049 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A 105 "   -0.040 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A 105 "    0.127 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  81 "   -0.109 2.00e-02 2.50e+03   5.23e-02 8.22e+01
        model="   1" pdb=" CG  TYR A  81 "   -0.007 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  81 "    0.023 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  81 "    0.018 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  81 "    0.016 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  81 "    0.023 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  81 "   -0.015 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  81 "   -0.111 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  81 "    0.047 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  81 "    0.033 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  81 "    0.033 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  81 "    0.050 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  12 "   -0.067 2.00e-02 2.50e+03   4.59e-02 6.33e+01
        model="   1" pdb=" CG  TYR A  12 "   -0.023 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  12 "    0.012 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  12 "    0.006 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  12 "    0.017 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  12 "    0.025 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  12 "   -0.018 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  12 "   -0.107 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  12 "    0.032 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  12 "    0.013 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  12 "    0.044 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  12 "    0.066 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.75 -     2.32: 411
        2.32 -     2.89: 5160
        2.89 -     3.46: 5182
        3.46 -     4.03: 6579
        4.03 -     4.60: 9925
  Nonbonded interactions: 27257
  Sorted by model distance:
  nonbonded model="   1" pdb=" OE1 GLU A  55 "
            model="   1" pdb=" HE  ARG A  58 "
     model   vdw
     1.751 1.850
  nonbonded model="   1" pdb=" OE2 GLU A  55 "
            model="   1" pdb="HH21 ARG A  58 "
     model   vdw
     1.768 1.850
  nonbonded model="   1" pdb=" OE2 GLU A  16 "
            model="   1" pdb=" HZ2 LYS A  19 "
     model   vdw
     1.837 1.850
  nonbonded model="   1" pdb=" HB2 PHE A  67 "
            model="   1" pdb="HE22 GLN A 100 "
     model   vdw
     1.855 2.270
  nonbonded model="   1" pdb=" HD3 ARG A 127 "
            model="   1" pdb=" HE  ARG A 129 "
     model   vdw
     1.889 2.270
  ... (remaining 27252 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.
  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 115
        1.23 -     1.43: 352
        1.43 -     1.63: 664
        1.63 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" CE1 HIS A 134 "
       model="   1" pdb=" NE2 HIS A 134 "
    ideal  model  delta    sigma   weight residual
    1.321  1.357 -0.036 1.00e-02 1.00e+04 1.32e+01
  bond model="   1" pdb=" CE1 HIS A 139 "
       model="   1" pdb=" NE2 HIS A 139 "
    ideal  model  delta    sigma   weight residual
    1.321  1.357 -0.036 1.00e-02 1.00e+04 1.31e+01
  bond model="   1" pdb=" CE1 HIS A 137 "
       model="   1" pdb=" NE2 HIS A 137 "
    ideal  model  delta    sigma   weight residual
    1.321  1.357 -0.036 1.00e-02 1.00e+04 1.27e+01
  bond model="   1" pdb=" CE1 HIS A 135 "
       model="   1" pdb=" NE2 HIS A 135 "
    ideal  model  delta    sigma   weight residual
    1.321  1.357 -0.036 1.00e-02 1.00e+04 1.27e+01
  bond model="   1" pdb=" CE1 HIS A 138 "
       model="   1" pdb=" NE2 HIS A 138 "
    ideal  model  delta    sigma   weight residual
    1.321  1.357 -0.036 1.00e-02 1.00e+04 1.27e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       96.86 -   103.81: 40
      103.81 -   110.76: 2232
      110.76 -   117.71: 836
      117.71 -   124.66: 891
      124.66 -   131.61: 78
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" CA  ASP A  47 "
        model="   1" pdb=" CB  ASP A  47 "
        model="   1" pdb=" CG  ASP A  47 "
      ideal   model   delta    sigma   weight residual
     112.60  103.04    9.56 1.00e+00 1.00e+00 9.14e+01
  angle model="   1" pdb=" CA  ILE A  51 "
        model="   1" pdb=" C   ILE A  51 "
        model="   1" pdb=" N   PRO A  52 "
      ideal   model   delta    sigma   weight residual
     116.90  126.16   -9.26 1.50e+00 4.44e-01 3.81e+01
  angle model="   1" pdb=" CB  HIS A  43 "
        model="   1" pdb=" CG  HIS A  43 "
        model="   1" pdb=" ND1 HIS A  43 "
      ideal   model   delta    sigma   weight residual
     122.70  113.79    8.91 1.50e+00 4.44e-01 3.52e+01
  angle model="   1" pdb=" CA  ASP A 116 "
        model="   1" pdb=" C   ASP A 116 "
        model="   1" pdb=" N   PRO A 117 "
      ideal   model   delta    sigma   weight residual
     116.90  124.95   -8.05 1.50e+00 4.44e-01 2.88e+01
  angle model="   1" pdb=" ND1 HIS A  43 "
        model="   1" pdb=" CG  HIS A  43 "
        model="   1" pdb=" CD2 HIS A  43 "
      ideal   model   delta    sigma   weight residual
     106.10  111.21   -5.11 1.00e+00 1.00e+00 2.61e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    16.25: 984
       16.25 -    32.51: 34
       32.51 -    48.76: 10
       48.76 -    65.01: 3
       65.01 -    81.27: 1
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" C   ILE A  78 "
           model="   1" pdb=" N   ILE A  78 "
           model="   1" pdb=" CA  ILE A  78 "
           model="   1" pdb=" CB  ILE A  78 "
      ideal   model   delta  harmonic     sigma   weight residual
    -122.00 -140.15   18.15     0      2.50e+00 1.60e-01 5.27e+01
  dihedral model="   1" pdb=" N   ILE A  78 "
           model="   1" pdb=" C   ILE A  78 "
           model="   1" pdb=" CA  ILE A  78 "
           model="   1" pdb=" CB  ILE A  78 "
      ideal   model   delta  harmonic     sigma   weight residual
     123.40  140.86  -17.46     0      2.50e+00 1.60e-01 4.88e+01
  dihedral model="   1" pdb=" CA  LEU A 119 "
           model="   1" pdb=" C   LEU A 119 "
           model="   1" pdb=" N   GLU A 120 "
           model="   1" pdb=" CA  GLU A 120 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  149.99   30.01     0      5.00e+00 4.00e-02 3.60e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.000 -    0.121: 132
       0.121 -    0.243: 33
       0.243 -    0.364: 8
       0.364 -    0.485: 2
       0.485 -    0.606: 1
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  ILE A  78 "
            model="   1" pdb=" N   ILE A  78 "
            model="   1" pdb=" C   ILE A  78 "
            model="   1" pdb=" CB  ILE A  78 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.43    1.83    0.61 2.00e-01 2.50e+01 9.19e+00
  chirality model="   1" pdb=" CA  GLU A  84 "
            model="   1" pdb=" N   GLU A  84 "
            model="   1" pdb=" C   GLU A  84 "
            model="   1" pdb=" CB  GLU A  84 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.04    0.47 2.00e-01 2.50e+01 5.42e+00
  chirality model="   1" pdb=" CA  SER A  97 "
            model="   1" pdb=" N   SER A  97 "
            model="   1" pdb=" C   SER A  97 "
            model="   1" pdb=" CB  SER A  97 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.11    0.40 2.00e-01 2.50e+01 4.05e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  HIS A  43 "   -0.208 2.00e-02 2.50e+03   1.23e-01 3.03e+02
        model="   1" pdb=" CG  HIS A  43 "    0.170 2.00e-02 2.50e+03
        model="   1" pdb=" ND1 HIS A  43 "    0.173 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 HIS A  43 "    0.033 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 HIS A  43 "   -0.016 2.00e-02 2.50e+03
        model="   1" pdb=" NE2 HIS A  43 "   -0.102 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 HIS A  43 "    0.031 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 HIS A  43 "   -0.081 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A 111 "    0.050 2.00e-02 2.50e+03   7.16e-02 1.54e+02
        model="   1" pdb=" CG  TYR A 111 "    0.036 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A 111 "    0.028 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A 111 "   -0.044 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A 111 "   -0.039 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A 111 "    0.030 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A 111 "    0.018 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A 111 "    0.039 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A 111 "    0.067 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A 111 "   -0.151 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A 111 "   -0.125 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A 111 "    0.089 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  91 "    0.128 2.00e-02 2.50e+03   6.80e-02 1.39e+02
        model="   1" pdb=" CG  TYR A  91 "    0.031 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  91 "   -0.007 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  91 "   -0.044 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  91 "   -0.032 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  91 "    0.006 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  91 "    0.028 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  91 "    0.097 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  91 "   -0.015 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  91 "   -0.127 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  91 "   -0.089 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  91 "    0.024 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.73 -     2.30: 362
        2.30 -     2.88: 5040
        2.88 -     3.45: 5099
        3.45 -     4.03: 6413
        4.03 -     4.60: 9857
  Nonbonded interactions: 26771
  Sorted by model distance:
  nonbonded model="   1" pdb=" OE2 GLU A  55 "
            model="   1" pdb="HH21 ARG A  58 "
     model   vdw
     1.731 1.850
  nonbonded model="   1" pdb=" HZ1 LYS A  10 "
            model="   1" pdb=" OD1 ASP A  23 "
     model   vdw
     1.756 1.850
  nonbonded model="   1" pdb=" OE1 GLU A  55 "
            model="   1" pdb=" HE  ARG A  58 "
     model   vdw
     1.757 1.850
  nonbonded model="   1" pdb="HH21 ARG A  21 "
            model="   1" pdb=" OD2 ASP A  74 "
     model   vdw
     1.808 1.850
  nonbonded model="   1" pdb=" H   VAL A  41 "
            model="   1" pdb="HG22 VAL A  41 "
     model   vdw
     1.833 2.270
  ... (remaining 26766 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 0.96
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 1.08 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 112
        1.23 -     1.43: 355
        1.43 -     1.62: 664
        1.62 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" CE1 HIS A  43 "
       model="   1" pdb=" NE2 HIS A  43 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.16e+01
  bond model="   1" pdb=" CD  ARG A 127 "
       model="   1" pdb=" NE  ARG A 127 "
    ideal  model  delta    sigma   weight residual
    1.458  1.505 -0.047 1.40e-02 5.10e+03 1.11e+01
  bond model="   1" pdb=" CE1 HIS A 137 "
       model="   1" pdb=" NE2 HIS A 137 "
    ideal  model  delta    sigma   weight residual
    1.321  1.354 -0.033 1.00e-02 1.00e+04 1.06e+01
  bond model="   1" pdb=" CE1 HIS A 139 "
       model="   1" pdb=" NE2 HIS A 139 "
    ideal  model  delta    sigma   weight residual
    1.321  1.353 -0.032 1.00e-02 1.00e+04 1.05e+01
  bond model="   1" pdb=" CE1 HIS A 135 "
       model="   1" pdb=" NE2 HIS A 135 "
    ideal  model  delta    sigma   weight residual
    1.321  1.353 -0.032 1.00e-02 1.00e+04 1.04e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       94.34 -   101.77: 7
      101.77 -   109.20: 1088
      109.20 -   116.63: 1936
      116.63 -   124.05: 920
      124.05 -   131.48: 126
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" CA  ILE A  30 "
        model="   1" pdb=" CB  ILE A  30 "
        model="   1" pdb=" CG1 ILE A  30 "
      ideal   model   delta    sigma   weight residual
     110.40  119.60   -9.20 1.70e+00 3.46e-01 2.93e+01
  angle model="   1" pdb=" CA  ASP A  44 "
        model="   1" pdb=" CB  ASP A  44 "
        model="   1" pdb=" CG  ASP A  44 "
      ideal   model   delta    sigma   weight residual
     112.60  107.19    5.41 1.00e+00 1.00e+00 2.92e+01
  angle model="   1" pdb=" C   GLY A  42 "
        model="   1" pdb=" N   HIS A  43 "
        model="   1" pdb=" CA  HIS A  43 "
      ideal   model   delta    sigma   weight residual
     121.70  130.70   -9.00 1.80e+00 3.09e-01 2.50e+01
  angle model="   1" pdb=" ND1 HIS A  43 "
        model="   1" pdb=" CG  HIS A  43 "
        model="   1" pdb=" CD2 HIS A  43 "
      ideal   model   delta    sigma   weight residual
     106.10  110.92   -4.82 1.00e+00 1.00e+00 2.32e+01
  angle model="   1" pdb=" N   SER A  90 "
        model="   1" pdb=" CA  SER A  90 "
        model="   1" pdb=" CB  SER A  90 "
      ideal   model   delta    sigma   weight residual
     110.50  118.47   -7.97 1.70e+00 3.46e-01 2.20e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    12.30: 957
       12.30 -    24.61: 53
       24.61 -    36.91: 11
       36.91 -    49.22: 7
       49.22 -    61.52: 4
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" CA  GLN A 100 "
           model="   1" pdb=" C   GLN A 100 "
           model="   1" pdb=" N   LYS A 101 "
           model="   1" pdb=" CA  LYS A 101 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  154.05   25.95     0      5.00e+00 4.00e-02 2.69e+01
  dihedral model="   1" pdb=" CA  ILE A  51 "
           model="   1" pdb=" C   ILE A  51 "
           model="   1" pdb=" N   PRO A  52 "
           model="   1" pdb=" CA  PRO A  52 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  159.73   20.27     0      5.00e+00 4.00e-02 1.64e+01
  dihedral model="   1" pdb=" CA  ASP A 116 "
           model="   1" pdb=" C   ASP A 116 "
           model="   1" pdb=" N   PRO A 117 "
           model="   1" pdb=" CA  PRO A 117 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  159.91   20.09     0      5.00e+00 4.00e-02 1.61e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.000 -    0.055: 94
       0.055 -    0.111: 51
       0.111 -    0.166: 15
       0.166 -    0.221: 9
       Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 74
        1.23 -     1.43: 396
        1.43 -     1.62: 661
        1.62 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" CE1 HIS A 134 "
       model="   1" pdb=" NE2 HIS A 134 "
    ideal  model  delta    sigma   weight residual
    1.321  1.357 -0.036 1.00e-02 1.00e+04 1.29e+01
  bond model="   1" pdb=" CE1 HIS A 136 "
       model="   1" pdb=" NE2 HIS A 136 "
    ideal  model  delta    sigma   weight residual
    1.321  1.357 -0.036 1.00e-02 1.00e+04 1.28e+01
  bond model="   1" pdb=" CE1 HIS A 139 "
       model="   1" pdb=" NE2 HIS A 139 "
    ideal  model  delta    sigma   weight residual
    1.321  1.357 -0.036 1.00e-02 1.00e+04 1.26e+01
  bond model="   1" pdb=" CE1 HIS A 138 "
       model="   1" pdb=" NE2 HIS A 138 "
    ideal  model  delta    sigma   weight residual
    1.321  1.356 -0.035 1.00e-02 1.00e+04 1.24e+01
  bond model="   1" pdb=" CE1 HIS A 135 "
       model="   1" pdb=" NE2 HIS A 135 "
    ideal  model  delta    sigma   weight residual
    1.321  1.356 -0.035 1.00e-02 1.00e+04 1.22e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       93.28 -   101.40: 10
      101.40 -   109.53: 1877
      109.53 -   117.66: 1204
      117.66 -   125.78: 941
      125.78 -   133.91: 45
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" CA  ILE A  30 "
        model="   1" pdb=" CB  ILE A  30 "
        model="   1" pdb=" CG1 ILE A  30 "
      ideal   model   delta    sigma   weight residual
     110.40  122.13  -11.73 1.70e+00 3.46e-01 4.76e+01
  angle model="   1" pdb=" CA  ILE A  51 "
        model="   1" pdb=" C   ILE A  51 "
        model="   1" pdb=" N   PRO A  52 "
      ideal   model   delta    sigma   weight residual
     116.90  125.08   -8.18 1.50e+00 4.44e-01 2.98e+01
  angle model="   1" pdb=" CB  LEU A   2 "
        model="   1" pdb=" CG  LEU A   2 "
        model="   1" pdb=" HG  LEU A   2 "
      ideal   model   delta    sigma   weight residual
     109.00   93.28   15.72 3.00e+00 1.11e-01 2.75e+01
  angle model="   1" pdb=" CA  PHE A  67 "
        model="   1" pdb=" CB  PHE A  67 "
        model="   1" pdb=" CG  PHE A  67 "
      ideal   model   delta    sigma   weight residual
     113.80  108.89    4.91 1.00e+00 1.00e+00 2.42e+01
  angle model="   1" pdb=" CA  LEU A  53 "
        model="   1" pdb=" C   LEU A  53 "
        model="   1" pdb=" N   PRO A  54 "
      ideal   model   delta    sigma   weight residual
     116.90  124.22   -7.32 1.50e+00 4.44e-01 2.38e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    13.98: 952
       13.98 -    27.97: 55
       27.97 -    41.95: 15
       41.95 -    55.93: 6
       55.93 -    69.91: 4
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" CA  HIS A 138 "
           model="   1" pdb=" C   HIS A 138 "
           model="   1" pdb=" N   HIS A 139 "
           model="   1" pdb=" CA  HIS A 139 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  159.69   20.31     0      5.00e+00 4.00e-02 1.65e+01
  dihedral model="   1" pdb=" C   THR A  83 "
           model="   1" pdb=" N   THR A  83 "
           model="   1" pdb=" CA  THR A  83 "
           model="   1" pdb=" CB  THR A  83 "
      ideal   model   delta  harmonic     sigma   weight residual
    -122.00 -131.76    9.76     0      2.50e+00 1.60e-01 1.52e+01
  dihedral model="   1" pdb=" C   LEU A   3 "
           model="   1" pdb=" N   LEU A   3 "
           model="   1" pdb=" CA  LEU A   3 "
           model="   1" pdb=" CB  LEU A   3 "
      ideal   model   delta  harmonic     sigma   weight residual
    -122.60 -113.27   -9.33     0      2.50e+00 1.60e-01 1.39e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.001 -    0.096: 120
       0.096 -    0.190: 40
       0.190 -    0.285: 11
       0.285 -    0.380: 4
       0.221 -    0.277: 7
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  LEU A   9 "
            model="   1" pdb=" N   LEU A   9 "
            model="   1" pdb=" C   LEU A   9 "
            model="   1" pdb=" CB  LEU A   9 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.23    0.28 2.00e-01 2.50e+01 1.91e+00
  chirality model="   1" pdb=" CA  TYR A  89 "
            model="   1" pdb=" N   TYR A  89 "
            model="   1" pdb=" C   TYR A  89 "
            model="   1" pdb=" CB  TYR A  89 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.24    0.27 2.00e-01 2.50e+01 1.84e+00
  chirality model="   1" pdb=" CA  ILE A   4 "
            model="   1" pdb=" N   ILE A   4 "
            model="   1" pdb=" C   ILE A   4 "
            model="   1" pdb=" CB  ILE A   4 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.43    2.69   -0.26 2.00e-01 2.50e+01 1.64e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  PHE A  15 "    0.121 2.00e-02 2.50e+03   5.97e-02 1.07e+02
        model="   1" pdb=" CG  PHE A  15 "    0.003 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 PHE A  15 "   -0.045 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 PHE A  15 "   -0.012 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 PHE A  15 "    0.013 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 PHE A  15 "   -0.024 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  PHE A  15 "    0.027 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 PHE A  15 "   -0.116 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 PHE A  15 "   -0.014 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 PHE A  15 "    0.041 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 PHE A  15 "   -0.065 2.00e-02 2.50e+03
        model="   1" pdb=" HZ  PHE A  15 "    0.070 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  81 "    0.060 2.00e-02 2.50e+03   3.22e-02 3.10e+01
        model="   1" pdb=" CG  TYR A  81 "    0.007 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  81 "   -0.013 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  81 "   -0.007 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  81 "   -0.011 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  81 "   -0.016 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  81 "    0.008 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  81 "    0.072 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  81 "   -0.029 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  81 "   -0.011 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  81 "   -0.022 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  81 "   -0.039 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  68 "   -0.049 2.00e-02 2.50e+03   2.31e-02 1.60e+01
        model="   1" pdb=" CG  TYR A  68 "    0.007 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  68 "    0.017 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  68 "    0.009 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  68 "   -0.011 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  68 "   -0.002 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  68 "   -0.029 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  68 "    0.006 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  68 "    0.043 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  68 "    0.018 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  68 "   -0.018 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  68 "    0.008 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.73 -     2.31: 381
        2.31 -     2.88: 50  0.380 -    0.475: 1
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CG  LEU A  53 "
            model="   1" pdb=" CB  LEU A  53 "
            model="   1" pdb=" CD1 LEU A  53 "
            model="   1" pdb=" CD2 LEU A  53 "
    both_signs  ideal   model   delta    sigma   weight residual
      False     -2.59   -2.11   -0.47 2.00e-01 2.50e+01 5.64e+00
  chirality model="   1" pdb=" CA  THR A  83 "
            model="   1" pdb=" N   THR A  83 "
            model="   1" pdb=" C   THR A  83 "
            model="   1" pdb=" CB  THR A  83 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.53    2.18    0.34 2.00e-01 2.50e+01 2.93e+00
  chirality model="   1" pdb=" CG  LEU A   3 "
            model="   1" pdb=" CB  LEU A   3 "
            model="   1" pdb=" CD1 LEU A   3 "
            model="   1" pdb=" CD2 LEU A   3 "
    both_signs  ideal   model   delta    sigma   weight residual
      False     -2.59   -2.92    0.33 2.00e-01 2.50e+01 2.76e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  68 "   -0.251 2.00e-02 2.50e+03   1.29e-01 5.00e+02
        model="   1" pdb=" CG  TYR A  68 "   -0.013 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  68 "    0.081 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  68 "    0.016 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  68 "    0.017 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  68 "    0.073 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  68 "   -0.011 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  68 "   -0.251 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  68 "    0.186 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  68 "   -0.003 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  68 "   -0.007 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  68 "    0.163 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  PHE A  45 "    0.183 2.00e-02 2.50e+03   7.63e-02 1.75e+02
        model="   1" pdb=" CG  PHE A  45 "   -0.000 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 PHE A  45 "   -0.032 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 PHE A  45 "   -0.056 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 PHE A  45 "   -0.010 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 PHE A  45 "    0.009 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  PHE A  45 "    0.030 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 PHE A  45 "   -0.068 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 PHE A  45 "   -0.141 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 PHE A  45 "   -0.022 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 PHE A  45 "    0.037 2.00e-02 2.50e+03
        model="   1" pdb=" HZ  PHE A  45 "    0.071 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  12 "    0.020 2.00e-02 2.50e+03   6.83e-02 1.40e+02
        model="   1" pdb=" CG  TYR A  12 "   -0.011 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  12 "    0.021 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  12 "   -0.043 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  12 "   -0.009 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  12 "    0.056 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  12 "    0.031 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  12 "   -0.079 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  12 "    0.063 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  12 "   -0.130 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  12 "   -0.056 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  12 "    0.137 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.72 -     2.30: 376
        2.30 -     2.87: 5167
        2.88 -     3.45: 5060
        3.45 -     4.03: 6560
        4.03 -     4.60: 9747
  Nonbonded interactions: 26815
  Sorted by model distance:
  nonbonded model="   1" pdb="HG23 VAL A  41 "
            model="   1" pdb=" H   HIS A  43 "
     model   vdw
     1.734 2.270
  nonbonded model="   1" pdb=" HB3 LEU A   3 "
            model="   1" pdb="HD22 LEU A  53 "
     model   vdw
     1.738 2.440
  nonbonded model="   1" pdb=" OD2 ASP A  74 "
            model="   1" pdb=" HZ2 LYS A  79 "
     model   vdw
     1.758 1.850
  nonbonded model="   1" pdb=" HH  TYR A  12 "
            model="   1" pdb=" OE1 GLU A  55 "
     model   vdw
     1.771 1.850
  nonbonded model="   1" pdb=" OE1 GLU A  16 "
            model="   1" pdb=" HZ2 LYS A  19 "
     model   vdw
     1.840 1.850
  ... (remaining 26810 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.
04
        2.87 -     3.45: 5414
        3.45 -     4.02: 6765
        4.02 -     4.60: 10277
  Nonbonded interactions: 27936
  Sorted by model distance:
  nonbonded model="   1" pdb=" HZ2 LYS A  79 "
            model="   1" pdb=" OE1 GLU A  84 "
     model   vdw
     1.723 1.850
  nonbonded model="   1" pdb="HG12 ILE A   4 "
            model="   1" pdb="HD21 LEU A  62 "
     model   vdw
     1.761 2.440
  nonbonded model="   1" pdb="HG13 VAL A  18 "
            model="   1" pdb=" HE  ARG A  21 "
     model   vdw
     1.855 2.270
  nonbonded model="   1" pdb=" HA  LEU A   9 "
            model="   1" pdb="HD22 LEU A  62 "
     model   vdw
     1.887 2.440
  nonbonded model="   1" pdb=" O   ASN A  72 "
            model="   1" pdb=" H   SER A  76 "
     model   vdw
     1.897 1.850
  ... (remaining 27931 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 0.78
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 0.89 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 129
        1.23 -     1.43: 336
        1.43 -     1.63: 666
        1.63 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" CD  ARG A  58 "
       model="   1" pdb=" NE  ARG A  58 "
    ideal  model  delta    sigma   weight residual
    1.458  1.513 -0.055 1.40e-02 5.10e+03 1.53e+01
  bond model="   1" pdb=" CE1 HIS A  43 "
       model="   1" pdb=" NE2 HIS A  43 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.15e+01
  bond model="   1" pdb=" CE1 HIS A 139 "
       model="   1" pdb=" NE2 HIS A 139 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.15e+01
  bond model="   1" pdb=" CE1 HIS A 135 "
       model="   1" pdb=" NE2 HIS A 135 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.13e+01
  bond model="   1" pdb=" CE1 HIS A 134 "
       model="   1" pdb=" NE2 HIS A 134 "
    ideal  model  delta    sigma   weight residual
    1.321  1.354 -0.033 1.00e-02 1.00e+04 1.09e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       97.00 -   103.99: 46
      103.99 -   110.97: 2274
      110.97 -   117.96: 801
      117.96 -   124.94: 886
      124.94 -   131.93: 70
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" CA  LYS A 113 "
        model="   1" pdb=" C   LYS A 113 "
        model="   1" pdb=" N   PRO A 114 "
      ideal   model   delta    sigma   weight residual
     116.90  128.77  -11.87 1.50e+00 4.44e-01 6.26e+01
  angle model="   1" pdb=" CA  ASP A  74 "
        model="   1" pdb=" CB  ASP A  74 "
        model="   1" pdb=" CG  ASP A  74 "
      ideal   model   delta    sigma   weight residual
     112.60  118.93   -6.33 1.00e+00 1.00e+00 4.00e+01
  angle model="   1" pdb=" CA  SER A  46 "
        model="   1" pdb=" CB  SER A  46 "
        model="   1" pdb=" OG  SER A  46 "
      ideal   model   delta    sigma   weight residual
     111.10  122.09  -10.99 2.00e+00 2.50e-01 3.02e+01
  angle model="   1" pdb=" CB  GLU A   8 "
        model="   1" pdb=" CG  GLU A   8 "
        model="   1" pdb=" CD  GLU A   8 "
      ideal   model   delta    sigma   weight residual
     112.60  103.85    8.75 1.70e+00 3.46e-01 2.65e+01
  angle model="   1" pdb=" CA  LEU A  53 "
        model="   1" pdb=" C   LEU A  53 "
        model="   1" pdb=" N   PRO A  54 "
      ideal   model   delta    sigma   weight residual
     116.90  124.18   -7.28 1.50e+00 4.44e-01 2.35e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    14.46: 946
       14.46 -    28.92: 54
       28.92 -    43.38: 19
       43.38 -    57.84: 9
       57.84 -    72.30: 4
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" CA  GLY A  87 "
           model="   1" pdb=" C   GLY A  87 "
           model="   1" pdb=" N   ASP A  88 "
           model="   1" pdb=" CA  ASP A  88 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  150.78   29.22     0      5.00e+00 4.00e-02 3.42e+01
  dihedral model="   1" pdb=" CA  ASP A 116 "
           model="   1" pdb=" C   ASP A 116 "
           model="   1" pdb=" N   PRO A 117 "
           model="   1" pdb=" CA  PRO A 117 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  154.71   25.29     0      5.00e+00 4.00e-02 2.56e+01
  dihedral model="   1" pdb=" CA  GLU A 120 "
           model="   1" pdb=" C   GLU A 120 "
           model="   1" pdb=" N   GLY A 121 "
           model="   1" pdb=" CA  GLY A 121 "
      ideal   model   delta  harmonic     sigma   weight residual
    -180.00 -155.67  -24.33     0      5.00e+00 4.00e-02 2.37e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.001 -    0.070: 93
       0.070 -    0.139: 54
       0.139 -    0.208: 18
       0.208 -    0.277: 7
       0.277 -    0.346: 4
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  ASP A  88 "
            model="   1" pdb=" N   ASP A  88 "
            model="   1" pdb=" C   ASP A  88 "
            model="   1" pdb=" CB  ASP A  88 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.16    0.35 2.00e-01 2.50e+01 3.00e+00
  chirality model="   1" pdb=" CA  VAL A 112 "
            model="   1" pdb=" N   VAL A 112 "
            model="   1" pdb=" C   VAL A 112 "
            model="   1" pdb=" CB  VAL A 112 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.44    2.12    0.33 2.00e-01 2.50e+01 2.64e+00
  chirality model="   1" pdb=" CA  PRO A  22 "
            model="   1" pdb=" N   PRO A  22 "
            model="   1" pdb=" C   PRO A  22 "
            model="   1" pdb=" CB  PRO A  22 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.72    2.44    0.28 2.00e-01 2.50e+01 1.95e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  PHE A  45 "    0.030 2.00e-02 2.50e+03   7.10e-02 1.51e+02
        model="   1" pdb=" CG  PHE A  45 "    0.034 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 PHE A  45 "   -0.039 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 PHE A  45 "    0.032 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 PHE A  45 "    0.024 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 PHE A  45 "   -0.046 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  PHE A  45 "    0.021 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 PHE A  45 "   -0.129 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 PHE A  45 "    0.083 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 PHE A  45 "    0.068 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 PHE A  45 "   -0.144 2.00e-02 2.50e+03
        model="   1" pdb=" HZ  PHE A  45 "    0.064 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  12 "   -0.030 2.00e-02 2.50e+03   4.50e-02 6.07e+01
        model="   1" pdb=" CG  TYR A  12 "   -0.023 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  12 "   -0.005 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  12 "    0.003 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  12 "    0.034 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  12 "    0.023 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  12 "    0.019 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  12 "   -0.118 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  12 "   -0.020 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  12 "    0.006 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  12 "    0.070 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  12 "    0.041 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  50 "   -0.074 2.00e-02 2.50e+03   3.64e-02 3.97e+01
        model="   1" pdb=" CG  TYR A  50 "   -0.016 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  50 "    0.014 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  50 "    0.014 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  50 "    0.008 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  50 "    0.011 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  50 "   -0.026 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  50 "   -0.066 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  50 "    0.038 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  50 "    0.036 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  50 "    0.027 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  50 "    0.033 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.63 -     2.23: 170
        2.23 -     2.82: 4554
        2.82 -     3.41: 5670
        3.41 -     4.01: 6875
        4.01 -     4.60: 10330
  Nonbonded interactions: 27599
  Sorted by model distance:
  nonbonded model="   1" pdb=" HZ3 LYS A  79 "
            model="   1" pdb=" OE2 GLU A  84 "
     model   vdw
     1.633 1.850
  nonbonded model="   1" pdb="HG23 VAL A  41 "
            model="   1" pdb=" H   HIS A  43 "
     model   vdw
     1.725 2.270
  nonbonded model="   1" pdb=" OD2 ASP A  36 "
            model="   1" pdb=" HH  TYR A  68 "
     model   vdw
     1.726 1.850
  nonbonded model="   1" pdb=" OE1 GLU A  55 "
            model="   1" pdb=" HE  ARG A  58 "
     model   vdw
     1.739 1.850
  nonbonded model="   1" pdb=" OE2 GLU A  55 "
            model="   1" pdb="HH21 ARG A  58 "
     model   vdw
     1.749 1.850
  ... (remaining 27594 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 0.92
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 1.05 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.


  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 0.95
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 1.06 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.


  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 0.98
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 1.11 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 86
        1.23 -     1.43: 391
        1.43 -     1.63: 654
        1.63 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" C   PRO A 117 "
       model="   1" pdb=" N   ASP A 118 "
    ideal  model  delta    sigma   weight residual
    1.329  1.410 -0.081 1.40e-02 5.10e+03 3.38e+01
  bond model="   1" pdb=" C   ASP A 116 "
       model="   1" pdb=" O   ASP A 116 "
    ideal  model  delta    sigma   weight residual
    1.231  1.342 -0.111 2.00e-02 2.50e+03 3.09e+01
  bond model="   1" pdb=" N   PRO A 117 "
       model="   1" pdb=" CD  PRO A 117 "
    ideal  model  delta    sigma   weight residual
    1.473  1.528 -0.055 1.40e-02 5.10e+03 1.53e+01
  bond model="   1" pdb=" CD  ARG A 129 "
       model="   1" pdb=" NE  ARG A 129 "
    ideal  model  delta    sigma   weight residual
    1.458  1.508 -0.050 1.40e-02 5.10e+03 1.27e+01
  bond model="   1" pdb=" CA  PRO A 117 "
       model="   1" pdb=" C   PRO A 117 "
    ideal  model  delta    sigma   weight residual
    1.525  1.599 -0.074 2.10e-02 2.27e+03 1.25e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       96.58 -   104.07: 53
      104.07 -   111.57: 2420
      111.57 -   119.06: 733
      119.06 -   126.55: 838
      126.55 -   134.05: 33
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" CA  ASP A  74 "
        model="   1" pdb=" CB  ASP A  74 "
        model="   1" pdb=" CG  ASP A  74 "
      ideal   model   delta    sigma   weight residual
     112.60  104.62    7.98 1.00e+00 1.00e+00 6.37e+01
  angle model="   1" pdb=" N   PRO A 117 "
        model="   1" pdb=" CA  PRO A 117 "
        model="   1" pdb=" C   PRO A 117 "
      ideal   model   delta    sigma   weight residual
     112.10  130.13  -18.03 2.50e+00 1.60e-01 5.20e+01
  angle model="   1" pdb=" CA  ASP A  29 "
        model="   1" pdb=" CB  ASP A  29 "
        model="   1" pdb=" CG  ASP A  29 "
      ideal   model   delta    sigma   weight residual
     112.60  119.62   -7.02 1.00e+00 1.00e+00 4.93e+01
  angle model="   1" pdb=" C   SER A  98 "
        model="   1" pdb=" N   LEU A  99 "
        model="   1" pdb=" CA  LEU A  99 "
      ideal   model   delta    sigma   weight residual
     121.70  134.05  -12.35 1.80e+00 3.09e-01 4.71e+01
  angle model="   1" pdb=" CB  PRO A 117 "
        model="   1" pdb=" CA  PRO A 117 "
        model="   1" pdb=" HA  PRO A 117 "
      ideal   model   delta    sigma   weight residual
     109.00  129.54  -20.54 3.00e+00 1.11e-01 4.69e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    16.80: 985
       16.80 -    33.59: 33
       33.59 -    50.39: 9
       50.39 -    67.18: 2
       67.18 -    83.97: 3
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" N   TYR A  89 "
           model="   1" pdb=" C   TYR A  89 "
           model="   1" pdb=" CA  TYR A  89 "
           model="   1" pdb=" CB  TYR A  89 "
      ideal   model   delta  harmonic     sigma   weight residual
     122.80  140.95  -18.15     0      2.50e+00 1.60e-01 5.27e+01
  dihedral model="   1" pdb=" CA  ASP A 116 "
           model="   1" pdb=" C   ASP A 116 "
           model="   1" pdb=" N   PRO A 117 "
           model="   1" pdb=" CA  PRO A 117 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00 -144.47  -35.53     0      5.00e+00 4.00e-02 5.05e+01
  dihedral model="   1" pdb=" C   TYR A  89 "
           model="   1" pdb=" N   TYR A  89 "
           model="   1" pdb=" CA  TYR A  89 "
           model="   1" pdb=" CB  TYR A  89 "
      ideal   model   delta  harmonic     sigma   weight residual
    -122.60 -139.37   16.77     0      2.50e+00 1.60e-01 4.50e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.002 -    0.138: 141
       0.138 -    0.273: 29
       0.273 -    0.409: 2
       0.409 -    0.545: 3
       0.545 -    0.680: 1
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  TYR A  89 "
            model="   1" pdb=" N   TYR A  89 "
            model="   1" pdb=" C   TYR A  89 "
            model="   1" pdb=" CB  TYR A  89 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    1.83    0.68 2.00e-01 2.50e+01 1.16e+01
  chirality model="   1" pdb=" CA  ASP A 116 "
            model="   1" pdb=" N   ASP A 116 "
            model="   1" pdb=" C   ASP A 116 "
            model="   1" pdb=" CB  ASP A 116 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.03    0.48 2.00e-01 2.50e+01 5.80e+00
  chirality model="   1" pdb=" CA  ASP A  74 "
            model="   1" pdb=" N   ASP A  74 "
            model="   1" pdb=" C   ASP A  74 "
            model="   1" pdb=" CB  ASP A  74 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.04    0.47 2.00e-01 2.50e+01 5.60e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  PHE A  45 "    0.006 2.00e-02 2.50e+03   4.14e-02 5.15e+01
        model="   1" pdb=" CG  PHE A  45 "    0.012 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 PHE A  45 "   -0.014 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 PHE A  45 "    0.018 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 PHE A  45 "    0.002 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 PHE A  45 "   -0.030 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  PHE A  45 "    0.021 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 PHE A  45 "   -0.040 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 PHE A  45 "    0.055 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 PHE A  45 "   -0.001 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 PHE A  45 "   -0.096 2.00e-02 2.50e+03
        model="   1" pdb=" HZ  PHE A  45 "    0.068 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A 105 "   -0.009 2.00e-02 2.50e+03   3.58e-02 3.84e+01
        model="   1" pdb=" CG  TYR A 105 "   -0.011 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A 105 "   -0.012 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A 105 "    0.004 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A 105 "    0.029 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A 105 "    0.013 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A 105 "    0.008 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A 105 "   -0.083 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A 105 "   -0.040 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A 105 "    0.009 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A 105 "    0.070 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A 105 "    0.022 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  PHE A  15 "    0.047 2.00e-02 2.50e+03   2.72e-02 2.22e+01
        model="   1" pdb=" CG  PHE A  15 "    0.030 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 PHE A  15 "   -0.005 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 PHE A  15 "   -0.015 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 PHE A  15 "   -0.006 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 PHE A  15 "    0.003 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  PHE A  15 "    0.012 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 PHE A  15 "   -0.028 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 PHE A  15 "   -0.056 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 PHE A  15 "   -0.020 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 PHE A  15 "    0.008 2.00e-02 2.50e+03
        model="   1" pdb=" HZ  PHE A  15 "    0.030 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.72 -     2.29: 335
        2.29 -     2.87: 5039
        2.87 -     3.45: 5221
        3.45 -     4.02: 6558
        4.02 -     4.60: 10047
  Nonbonded interactions: 27200
  Sorted by model distance:
  nonbonded model="   1" pdb="HG23 VAL A  41 "
            model="   1" pdb=" H   HIS A  43 "
     model   vdw
     1.718 2.270
  nonbonded model="   1" pdb=" HZ2 LYS A  40 "
            model="   1" pdb=" OE1 GLN A 100 "
     model   vdw
     1.799 1.850
  nonbonded model="   1" pdb=" OD1 ASP A  74 "
            model="   1" pdb=" HZ1 LYS A  79 "
     model   vdw
     1.822 1.850
  nonbonded model="   1" pdb=" O   ASP A  23 "
            model="   1" pdb=" H   LYS A  27 "
     model   vdw
     1.918 1.850
  nonbonded model="   1" pdb=" H   LEU A   2 "
            model="   1" pdb="HD12 LEU A   2 "
     model   vdw
     1.924 2.270
  ... (remaining 27195 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 0.90
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 1.03 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 127
        1.23 -     1.43: 340
        1.43 -     1.63: 664
        1.63 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" C   THR A  83 "
       model="   1" pdb=" N   GLU A  84 "
    ideal  model  delta    sigma   weight residual
    1.329  1.431 -0.102 1.40e-02 5.10e+03 5.27e+01
  bond model="   1" pdb=" C   GLU A  84 "
       model="   1" pdb=" N   LYS A  85 "
    ideal  model  delta    sigma   weight residual
    1.329  1.419 -0.090 1.40e-02 5.10e+03 4.17e+01
  bond model="   1" pdb=" N   GLU A  84 "
       model="   1" pdb=" CA  GLU A  84 "
    ideal  model  delta    sigma   weight residual
    1.458  1.574 -0.116 1.90e-02 2.77e+03 3.71e+01
  bond model="   1" pdb=" C   ASP A  95 "
       model="   1" pdb=" N   GLY A  96 "
    ideal  model  delta    sigma   weight residual
    1.329  1.388 -0.059 1.40e-02 5.10e+03 1.78e+01
  bond model="   1" pdb=" CA  GLU A  84 "
       model="   1" pdb=" C   GLU A  84 "
    ideal  model  delta    sigma   weight residual
    1.525  1.608 -0.083 2.10e-02 2.27e+03 1.56e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       88.56 -    97.81: 4
       97.81 -   107.06: 449
      107.06 -   116.32: 2551
      116.32 -   125.57: 1025
      125.57 -   134.83: 48
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" CA  ASP A  95 "
        model="   1" pdb=" CB  ASP A  95 "
        model="   1" pdb=" CG  ASP A  95 "
      ideal   model   delta    sigma   weight residual
     112.60  129.45  -16.85 1.00e+00 1.00e+00 2.84e+02
  angle model="   1" pdb=" C   ASP A  95 "
        model="   1" pdb=" CA  ASP A  95 "
        model="   1" pdb=" CB  ASP A  95 "
      ideal   model   delta    sigma   weight residual
     110.10  126.88  -16.78 1.90e+00 2.77e-01 7.80e+01
  angle model="   1" pdb=" CA  ILE A  51 "
        model="   1" pdb=" C   ILE A  51 "
        model="   1" pdb=" N   PRO A  52 "
      ideal   model   delta    sigma   weight residual
     116.90  128.43  -11.53 1.50e+00 4.44e-01 5.91e+01
  angle model="   1" pdb=" C   THR A  83 "
        model="   1" pdb=" N   GLU A  84 "
        model="   1" pdb=" CA  GLU A  84 "
      ideal   model   delta    sigma   weight residual
     121.70  134.83  -13.13 1.80e+00 3.09e-01 5.32e+01
  angle model="   1" pdb=" N   SER A  97 "
        model="   1" pdb=" CA  SER A  97 "
        model="   1" pdb=" HA  SER A  97 "
      ideal   model   delta    sigma   weight residual
     110.00   88.56   21.44 3.00e+00 1.11e-01 5.11e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    15.61: 965
       15.61 -    31.21: 41
       31.21 -    46.82: 18
       46.82 -    62.42: 5
       62.42 -    78.03: 3
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" CA  GLU A  75 "
           model="   1" pdb=" C   GLU A  75 "
           model="   1" pdb=" N   SER A  76 "
           model="   1" pdb=" CA  SER A  76 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  136.03   43.97     0      5.00e+00 4.00e-02 7.73e+01
  dihedral model="   1" pdb=" CA  THR A  83 "
           model="   1" pdb=" C   THR A  83 "
           model="   1" pdb=" N   GLU A  84 "
           model="   1" pdb=" CA  GLU A  84 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  138.94   41.06     0      5.00e+00 4.00e-02 6.74e+01
  dihedral model="   1" pdb=" C   ASP A  95 "
           model="   1" pdb=" N   ASP A  95 "
           model="   1" pdb=" CA  ASP A  95 "
           model="   1" pdb=" CB  ASP A  95 "
      ideal   model   delta  harmonic     sigma   weight residual
    -122.60 -137.53   14.93     0      2.50e+00 1.60e-01 3.57e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.000 -    0.090: 114
       0.090 -    0.181: 49
       0.181 -    0.271: 10
       0.271 -    0.362: 0
       0.362 -    0.452: 3
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  THR A  82 "
            model="   1" pdb=" N   THR A  82 "
            model="   1" pdb=" C   THR A  82 "
            model="   1" pdb=" CB  THR A  82 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.53    2.07    0.45 2.00e-01 2.50e+01 5.11e+00
  chirality model="   1" pdb=" CA  SER A  97 "
            model="   1" pdb=" N   SER A  97 "
            model="   1" pdb=" C   SER A  97 "
            model="   1" pdb=" CB  SER A  97 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.09    0.42 2.00e-01 2.50e+01 4.42e+00
  chirality model="   1" pdb=" CA  SER A  76 "
            model="   1" pdb=" N   SER A  76 "
            model="   1" pdb=" C   SER A  76 "
            model="   1" pdb=" CB  SER A  76 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.14    0.37 2.00e-01 2.50e+01 3.40e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  81 "    0.114 2.00e-02 2.50e+03   4.68e-02 6.56e+01
        model="   1" pdb=" CG  TYR A  81 "   -0.043 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  81 "   -0.025 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  81 "   -0.027 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  81 "   -0.016 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  81 "   -0.013 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  81 "    0.002 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  81 "    0.089 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  81 "   -0.018 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  81 "   -0.025 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  81 "   -0.023 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  81 "   -0.014 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  HIS A  43 "   -0.081 2.00e-02 2.50e+03   4.78e-02 4.56e+01
        model="   1" pdb=" CG  HIS A  43 "    0.072 2.00e-02 2.50e+03
        model="   1" pdb=" ND1 HIS A  43 "    0.062 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 HIS A  43 "    0.014 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 HIS A  43 "   -0.007 2.00e-02 2.50e+03
        model="   1" pdb=" NE2 HIS A  43 "   -0.036 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 HIS A  43 "    0.010 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 HIS A  43 "   -0.034 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  50 "    0.058 2.00e-02 2.50e+03   3.66e-02 4.02e+01
        model="   1" pdb=" CG  TYR A  50 "   -0.029 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  50 "   -0.023 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  50 "   -0.001 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  50 "   -0.001 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  50 "   -0.025 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  50 "    0.004 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  50 "    0.066 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  50 "   -0.034 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  50 "    0.035 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  50 "    0.010 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  50 "   -0.061 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.61 -     2.21: 145
        2.21 -     2.80: 4370
        2.80 -     3.40: 5599
        3.40 -     4.00: 6786
        4.00 -     4.60: 10154
  Nonbonded interactions: 27054
  Sorted by model distance:
  nonbonded model="   1" pdb=" HB  THR A  83 "
            model="   1" pdb=" HA  ASP A  95 "
     model   vdw
     1.607 2.440
  nonbonded model="   1" pdb="HH22 ARG A  21 "
            model="   1" pdb="HD22 ASN A  72 "
     model   vdw
     1.777 2.100
  nonbonded model="   1" pdb=" H   ASP A  95 "
            model="   1" pdb=" HB2 ASP A  95 "
     model   vdw
     1.804 2.270
  nonbonded model="   1" pdb="HE21 GLN A  28 "
            model="   1" pdb=" OE2 GLU A  32 "
     model   vdw
     1.815 1.850
  nonbonded model="   1" pdb=" OE1 GLU A  55 "
            model="   1" pdb="HH21 ARG A  58 "
     model   vdw
     1.841 1.850
  ... (remaining 27049 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.
  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 91
        1.23 -     1.43: 377
        1.43 -     1.63: 663
        1.63 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" CA  ASN A  72 "
       model="   1" pdb=" CB  ASN A  72 "
    ideal  model  delta    sigma   weight residual
    1.530  1.602 -0.072 2.00e-02 2.50e+03 1.30e+01
  bond model="   1" pdb=" CD  ARG A  58 "
       model="   1" pdb=" NE  ARG A  58 "
    ideal  model  delta    sigma   weight residual
    1.458  1.504 -0.046 1.40e-02 5.10e+03 1.10e+01
  bond model="   1" pdb=" CE1 HIS A 134 "
       model="   1" pdb=" NE2 HIS A 134 "
    ideal  model  delta    sigma   weight residual
    1.321  1.353 -0.032 1.00e-02 1.00e+04 1.00e+01
  bond model="   1" pdb=" CE1 HIS A 136 "
       model="   1" pdb=" NE2 HIS A 136 "
    ideal  model  delta    sigma   weight residual
    1.321  1.352 -0.031 1.00e-02 1.00e+04 9.77e+00
  bond model="   1" pdb=" CE1 HIS A 137 "
       model="   1" pdb=" NE2 HIS A 137 "
    ideal  model  delta    sigma   weight residual
    1.321  1.352 -0.031 1.00e-02 1.00e+04 9.64e+00
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       95.47 -   103.12: 35
      103.12 -   110.76: 2249
      110.76 -   118.41: 874
      118.41 -   126.06: 877
      126.06 -   133.71: 42
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" CA  ASN A  72 "
        model="   1" pdb=" CB  ASN A  72 "
        model="   1" pdb=" CG  ASN A  72 "
      ideal   model   delta    sigma   weight residual
     112.60  120.82   -8.22 1.00e+00 1.00e+00 6.76e+01
  angle model="   1" pdb=" CA  ASP A 116 "
        model="   1" pdb=" C   ASP A 116 "
        model="   1" pdb=" N   PRO A 117 "
      ideal   model   delta    sigma   weight residual
     116.90  127.28  -10.38 1.50e+00 4.44e-01 4.79e+01
  angle model="   1" pdb=" C   GLY A  73 "
        model="   1" pdb=" N   ASP A  74 "
        model="   1" pdb=" CA  ASP A  74 "
      ideal   model   delta    sigma   weight residual
     121.70  133.71  -12.01 1.80e+00 3.09e-01 4.45e+01
  angle model="   1" pdb=" CB  GLU A  32 "
        model="   1" pdb=" CG  GLU A  32 "
        model="   1" pdb=" CD  GLU A  32 "
      ideal   model   delta    sigma   weight residual
     112.60  123.36  -10.76 1.70e+00 3.46e-01 4.01e+01
  angle model="   1" pdb=" CA  ILE A  51 "
        model="   1" pdb=" C   ILE A  51 "
        model="   1" pdb=" N   PRO A  52 "
      ideal   model   delta    sigma   weight residual
     116.90  126.26   -9.36 1.50e+00 4.44e-01 3.89e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    16.30: 972
       16.30 -    32.59: 45
       32.59 -    48.89: 9
       48.89 -    65.19: 3
       65.19 -    81.48: 3
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" C   ASP A  88 "
           model="   1" pdb=" N   ASP A  88 "
           model="   1" pdb=" CA  ASP A  88 "
           model="   1" pdb=" CB  ASP A  88 "
      ideal   model   delta  harmonic     sigma   weight residual
    -122.60 -146.18   23.58     0      2.50e+00 1.60e-01 8.90e+01
  dihedral model="   1" pdb=" N   ASP A  88 "
           model="   1" pdb=" C   ASP A  88 "
           model="   1" pdb=" CA  ASP A  88 "
           model="   1" pdb=" CB  ASP A  88 "
      ideal   model   delta  harmonic     sigma   weight residual
     122.80  145.61  -22.81     0      2.50e+00 1.60e-01 8.33e+01
  dihedral model="   1" pdb=" C   ASP A  74 "
           model="   1" pdb=" N   ASP A  74 "
           model="   1" pdb=" CA  ASP A  74 "
           model="   1" pdb=" CB  ASP A  74 "
      ideal   model   delta  harmonic     sigma   weight residual
    -122.60 -139.37   16.77     0      2.50e+00 1.60e-01 4.50e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.000 -    0.203: 159
       0.203 -    0.405: 12
       0.405 -    0.607: 4
       0.607 -    0.810: 0
       0.810 -    1.012: 1
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  ASP A  88 "
            model="   1" pdb=" N   ASP A  88 "
            model="   1" pdb=" C   ASP A  88 "
            model="   1" pdb=" CB  ASP A  88 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    1.50    1.01 2.00e-01 2.50e+01 2.56e+01
  chirality model="   1" pdb=" CA  ASP A  74 "
            model="   1" pdb=" N   ASP A  74 "
            model="   1" pdb=" C   ASP A  74 "
            model="   1" pdb=" CB  ASP A  74 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    1.90    0.61 2.00e-01 2.50e+01 9.17e+00
  chirality model="   1" pdb=" CA  PRO A  54 "
            model="   1" pdb=" N   PRO A  54 "
            model="   1" pdb=" C   PRO A  54 "
            model="   1" pdb=" CB  PRO A  54 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.72    2.25    0.47 2.00e-01 2.50e+01 5.45e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  68 "   -0.039 2.00e-02 2.50e+03   1.03e-01 3.20e+02
        model="   1" pdb=" CG  TYR A  68 "   -0.038 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  68 "    0.061 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  68 "   -0.033 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  68 "   -0.081 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  68 "    0.010 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  68 "   -0.112 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  68 "    0.101 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  68 "    0.220 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  68 "   -0.059 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  68 "   -0.153 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  68 "    0.123 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  PHE A  45 "    0.152 2.00e-02 2.50e+03   9.05e-02 2.46e+02
        model="   1" pdb=" CG  PHE A  45 "    0.033 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 PHE A  45 "   -0.057 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 PHE A  45 "   -0.006 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 PHE A  45 "    0.009 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 PHE A  45 "   -0.045 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  PHE A  45 "    0.050 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 PHE A  45 "   -0.162 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 PHE A  45 "   -0.005 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 PHE A  45 "    0.025 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 PHE A  45 "   -0.136 2.00e-02 2.50e+03
        model="   1" pdb=" HZ  PHE A  45 "    0.143 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A 111 "    0.057 2.00e-02 2.50e+03   6.14e-02 1.13e+02
        model="   1" pdb=" CG  TYR A 111 "   -0.021 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A 111 "    0.015 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A 111 "   -0.030 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A 111 "   -0.051 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A 111 "   -0.007 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A 111 "   -0.029 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A 111 "    0.122 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A 111 "    0.082 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A 111 "   -0.053 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A 111 "   -0.109 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A 111 "    0.024 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.66 -     2.25: 220
        2.25 -     2.83: 4704
        2.83 -     3.42: 5673
        3.42 -     4.01: 7051
        4.01 -     4.60: 10417
  Nonbonded interactions: 28065
  Sorted by model distance:
  nonbonded model="   1" pdb="HG22 ILE A   4 "
            model="   1" pdb="HD23 LEU A  61 "
     model   vdw
     1.658 2.440
  nonbonded model="   1" pdb=" OD1 ASP A   7 "
            model="   1" pdb=" HZ3 LYS A  10 "
     model   vdw
     1.692 1.850
  nonbonded model="   1" pdb="HD22 LEU A  93 "
            model="   1" pdb="HD11 LEU A  99 "
     model   vdw
     1.737 2.440
  nonbonded model="   1" pdb="HG23 VAL A  41 "
            model="   1" pdb=" H   HIS A  43 "
     model   vdw
     1.765 2.270
  nonbonded model="   1" pdb=" HZ1 LYS A  85 "
            model="   1" pdb=" OD1 ASP A  88 "
     model   vdw
     1.766 1.850
  ... (remaining 28060 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.
  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 87
        1.23 -     1.43: 378
        1.43 -     1.63: 666
        1.63 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" CE1 HIS A  43 "
       model="   1" pdb=" NE2 HIS A  43 "
    ideal  model  delta    sigma   weight residual
    1.321  1.357 -0.036 1.00e-02 1.00e+04 1.33e+01
  bond model="   1" pdb=" CE1 HIS A 136 "
       model="   1" pdb=" NE2 HIS A 136 "
    ideal  model  delta    sigma   weight residual
    1.321  1.357 -0.036 1.00e-02 1.00e+04 1.31e+01
  bond model="   1" pdb=" CE1 HIS A 135 "
       model="   1" pdb=" NE2 HIS A 135 "
    ideal  model  delta    sigma   weight residual
    1.321  1.357 -0.036 1.00e-02 1.00e+04 1.31e+01
  bond model="   1" pdb=" CE1 HIS A 137 "
       model="   1" pdb=" NE2 HIS A 137 "
    ideal  model  delta    sigma   weight residual
    1.321  1.357 -0.036 1.00e-02 1.00e+04 1.29e+01
  bond model="   1" pdb=" C   LYS A 113 "
       model="   1" pdb=" O   LYS A 113 "
    ideal  model  delta    sigma   weight residual
    1.231  1.160  0.071 2.00e-02 2.50e+03 1.25e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       96.75 -   103.85: 29
      103.85 -   110.94: 2293
      110.94 -   118.03: 813
      118.03 -   125.12: 887
      125.12 -   132.21: 55
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" CA  ASP A 116 "
        model="   1" pdb=" C   ASP A 116 "
        model="   1" pdb=" N   PRO A 117 "
      ideal   model   delta    sigma   weight residual
     116.90  125.76   -8.86 1.50e+00 4.44e-01 3.49e+01
  angle model="   1" pdb=" CA  ASP A 116 "
        model="   1" pdb=" CB  ASP A 116 "
        model="   1" pdb=" CG  ASP A 116 "
      ideal   model   delta    sigma   weight residual
     112.60  117.33   -4.73 1.00e+00 1.00e+00 2.24e+01
  angle model="   1" pdb=" C   ILE A  77 "
        model="   1" pdb=" N   ILE A  78 "
        model="   1" pdb=" CA  ILE A  78 "
      ideal   model   delta    sigma   weight residual
     121.70  130.05   -8.35 1.80e+00 3.09e-01 2.15e+01
  angle model="   1" pdb=" CA  ARG A  21 "
        model="   1" pdb=" C   ARG A  21 "
        model="   1" pdb=" N   PRO A  22 "
      ideal   model   delta    sigma   weight residual
     116.90  123.66   -6.76 1.50e+00 4.44e-01 2.03e+01
  angle model="   1" pdb=" ND1 HIS A 138 "
        model="   1" pdb=" CG  HIS A 138 "
        model="   1" pdb=" CD2 HIS A 138 "
      ideal   model   delta    sigma   weight residual
     106.10  110.54   -4.44 1.00e+00 1.00e+00 1.97e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    12.70: 963
       12.70 -    25.40: 53
       25.40 -    38.10: 8
       38.10 -    50.79: 6
       50.79 -    63.49: 2
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" CA  ILE A 122 "
           model="   1" pdb=" C   ILE A 122 "
           model="   1" pdb=" N   GLU A 123 "
           model="   1" pdb=" CA  GLU A 123 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  154.06   25.94     0      5.00e+00 4.00e-02 2.69e+01
  dihedral model="   1" pdb=" N   LYS A 101 "
           model="   1" pdb=" C   LYS A 101 "
           model="   1" pdb=" CA  LYS A 101 "
           model="   1" pdb=" CB  LYS A 101 "
      ideal   model   delta  harmonic     sigma   weight residual
     122.80  134.43  -11.63     0      2.50e+00 1.60e-01 2.16e+01
  dihedral model="   1" pdb=" CA  GLY A 121 "
           model="   1" pdb=" C   GLY A 121 "
           model="   1" pdb=" N   ILE A 122 "
           model="   1" pdb=" CA  ILE A 122 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  158.13   21.87     0      5.00e+00 4.00e-02 1.91e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.000 -    0.080: 110
       0.080 -    0.160: 45
       0.160 -    0.241: 13
       0.241 -    0.321: 6
       0.321 -    0.401: 2
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  LYS A 101 "
            model="   1" pdb=" N   LYS A 101 "
            model="   1" pdb=" C   LYS A 101 "
            model="   1" pdb=" CB  LYS A 101 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.11    0.40 2.00e-01 2.50e+01 4.02e+00
  chirality model="   1" pdb=" CA  TYR A  50 "
            model="   1" pdb=" N   TYR A  50 "
            model="   1" pdb=" C   TYR A  50 "
            model="   1" pdb=" CB  TYR A  50 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.17    0.34 2.00e-01 2.50e+01 2.91e+00
  chirality model="   1" pdb=" CA  LEU A   9 "
            model="   1" pdb=" N   LEU A   9 "
            model="   1" pdb=" C   LEU A   9 "
            model="   1" pdb=" CB  LEU A   9 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.23    0.28 2.00e-01 2.50e+01 1.97e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  PHE A  45 "    0.010 2.00e-02 2.50e+03   6.13e-02 1.13e+02
        model="   1" pdb=" CG  PHE A  45 "   -0.090 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 PHE A  45 "   -0.022 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 PHE A  45 "   -0.004 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 PHE A  45 "    0.034 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 PHE A  45 "    0.015 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  PHE A  45 "   -0.037 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 PHE A  45 "   -0.013 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 PHE A  45 "    0.042 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 PHE A  45 "    0.118 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 PHE A  45 "    0.063 2.00e-02 2.50e+03
        model="   1" pdb=" HZ  PHE A  45 "   -0.117 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  PHE A  67 "   -0.085 2.00e-02 2.50e+03   4.13e-02 5.13e+01
        model="   1" pdb=" CG  PHE A  67 "    0.022 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 PHE A  67 "    0.011 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 PHE A  67 "    0.028 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 PHE A  67 "    0.018 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 PHE A  67 "    0.002 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  PHE A  67 "   -0.027 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 PHE A  67 "   -0.001 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 PHE A  67 "    0.049 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 PHE A  67 "    0.052 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 PHE A  67 "    0.004 2.00e-02 2.50e+03
        model="   1" pdb=" HZ  PHE A  67 "   -0.075 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A 111 "   -0.091 2.00e-02 2.50e+03   3.98e-02 4.75e+01
        model="   1" pdb=" CG  TYR A 111 "    0.009 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A 111 "    0.032 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A 111 "    0.011 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A 111 "   -0.008 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A 111 "    0.013 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A 111 "   -0.017 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A 111 "   -0.039 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A 111 "    0.073 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A 111 "    0.012 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A 111 "   -0.027 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A 111 "    0.033 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.71 -     2.29: 326
        2.29 -     2.87: 5064
        2.87 -     3.45: 5109
        3.45 -     4.02: 6631
        4.02 -     4.60: 9969
  Nonbonded interactions: 27099
  Sorted by model distance:
  nonbonded model="   1" pdb=" HZ1 LYS A  10 "
            model="   1" pdb=" OD1 ASP A  23 "
     model   vdw
     1.714 1.850
  nonbonded model="   1" pdb="HD12 ILE A   4 "
            model="   1" pdb="HD23 LEU A  62 "
     model   vdw
     1.726 2.440
  nonbonded model="   1" pdb=" HE1 PHE A  45 "
            model="   1" pdb=" HH  TYR A 111 "
     model   vdw
     1.764 2.100
  nonbonded model="   1" pdb="HD22 LEU A   2 "
            model="   1" pdb="HG22 ILE A  30 "
     model   vdw
     1.815 2.440
  nonbonded model="   1" pdb=" HA  LEU A   9 "
            model="   1" pdb="HD22 LEU A  62 "
     model   vdw
     1.818 2.440
  ... (remaining 27094 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 0.90
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 0.98 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.


  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 0.92
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 1.05 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 100
        1.23 -     1.43: 366
        1.43 -     1.62: 665
        1.62 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" CD  ARG A  21 "
       model="   1" pdb=" NE  ARG A  21 "
    ideal  model  delta    sigma   weight residual
    1.458  1.513 -0.055 1.40e-02 5.10e+03 1.55e+01
  bond model="   1" pdb=" CE1 HIS A 139 "
       model="   1" pdb=" NE2 HIS A 139 "
    ideal  model  delta    sigma   weight residual
    1.321  1.354 -0.033 1.00e-02 1.00e+04 1.07e+01
  bond model="   1" pdb=" CE1 HIS A 137 "
       model="   1" pdb=" NE2 HIS A 137 "
    ideal  model  delta    sigma   weight residual
    1.321  1.353 -0.032 1.00e-02 1.00e+04 1.04e+01
  bond model="   1" pdb=" CE1 HIS A  43 "
       model="   1" pdb=" NE2 HIS A  43 "
    ideal  model  delta    sigma   weight residual
    1.321  1.353 -0.032 1.00e-02 1.00e+04 1.04e+01
  bond model="   1" pdb=" CE1 HIS A 135 "
       model="   1" pdb=" NE2 HIS A 135 "
    ideal  model  delta    sigma   weight residual
    1.321  1.353 -0.032 1.00e-02 1.00e+04 9.94e+00
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       96.55 -   104.99: 94
      104.99 -   113.43: 2687
      113.43 -   121.86: 931
      121.86 -   130.30: 361
      130.30 -   138.74: 4
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" C   HIS A 136 "
        model="   1" pdb=" N   HIS A 137 "
        model="   1" pdb=" CA  HIS A 137 "
      ideal   model   delta    sigma   weight residual
     121.70  138.74  -17.04 1.80e+00 3.09e-01 8.96e+01
  angle model="   1" pdb=" C   HIS A 134 "
        model="   1" pdb=" N   HIS A 135 "
        model="   1" pdb=" CA  HIS A 135 "
      ideal   model   delta    sigma   weight residual
     121.70  137.96  -16.26 1.80e+00 3.09e-01 8.16e+01
  angle model="   1" pdb=" CA  ILE A  51 "
        model="   1" pdb=" C   ILE A  51 "
        model="   1" pdb=" N   PRO A  52 "
      ideal   model   delta    sigma   weight residual
     116.90  125.71   -8.81 1.50e+00 4.44e-01 3.45e+01
  angle model="   1" pdb=" N   HIS A 134 "
        model="   1" pdb=" CA  HIS A 134 "
        model="   1" pdb=" CB  HIS A 134 "
      ideal   model   delta    sigma   weight residual
     110.50  119.72   -9.22 1.70e+00 3.46e-01 2.94e+01
  angle model="   1" pdb=" O   HIS A 136 "
        model="   1" pdb=" C   HIS A 136 "
        model="   1" pdb=" N   HIS A 137 "
      ideal   model   delta    sigma   weight residual
     123.00  114.57    8.43 1.60e+00 3.91e-01 2.78e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    12.66: 938
       12.66 -    25.32: 64
       25.32 -    37.98: 15
       37.98 -    50.63: 8
       50.63 -    63.29: 7
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" CA  ASP A 116 "
           model="   1" pdb=" C   ASP A 116 "
           model="   1" pdb=" N   PRO A 117 "
           model="   1" pdb=" CA  PRO A 117 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  130.08   49.92     0      5.00e+00 4.00e-02 9.97e+01
  dihedral model="   1" pdb=" CA  PRO A 117 "
           model="   1" pdb=" C   PRO A 117 "
           model="   1" pdb=" N   ASP A 118 "
           model="   1" pdb=" CA  ASP A 118 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  150.73   29.27     0      5.00e+00 4.00e-02 3.43e+01
  dihedral model="   1" pdb=" CA  PRO A 114 "
           model="   1" pdb=" C   PRO A 114 "
           model="   1" pdb=" N   ALA A 115 "
           model="   1" pdb=" CA  ALA A 115 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  154.27   25.73     0      5.00e+00 4.00e-02 2.65e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.001 -    0.099: 115
       0.099 -    0.198: 46
       0.198 -    0.297: 12
       0.297 -    0.395: 1
       0.395 -    0.494: 2
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  THR A  83 "
            model="   1" pdb=" N   THR A  83 "
            model="   1" pdb=" C   THR A  83 "
            model="   1" pdb=" CB  THR A  83 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.53    2.03    0.49 2.00e-01 2.50e+01 6.10e+00
  chirality model="   1" pdb=" CA  HIS A 136 "
            model="   1" pdb=" N   HIS A 136 "
            model="   1" pdb=" C   HIS A 136 "
            model="   1" pdb=" CB  HIS A 136 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.09    0.42 2.00e-01 2.50e+01 4.51e+00
  chirality model="   1" pdb=" CA  HIS A 134 "
            model="   1" pdb=" N   HIS A 134 "
            model="   1" pdb=" C   HIS A 134 "
            model="   1" pdb=" CB  HIS A 134 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.19    0.32 2.00e-01 2.50e+01 2.58e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A 111 "   -0.232 2.00e-02 2.50e+03   9.21e-02 2.55e+02
        model="   1" pdb=" CG  TYR A 111 "    0.002 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A 111 "    0.053 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A 111 "    0.051 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A 111 "    0.009 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A 111 "    0.012 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A 111 "   -0.046 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A 111 "   -0.117 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A 111 "    0.117 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A 111 "    0.109 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A 111 "    0.016 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A 111 "    0.025 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  PHE A  15 "    0.198 2.00e-02 2.50e+03   8.53e-02 2.18e+02
        model="   1" pdb=" CG  PHE A  15 "    0.022 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 PHE A  15 "   -0.057 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 PHE A  15 "   -0.038 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 PHE A  15 "    0.006 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 PHE A  15 "   -0.011 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  PHE A  15 "    0.037 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 PHE A  15 "   -0.151 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 PHE A  15 "   -0.097 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 PHE A  15 "    0.027 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 PHE A  15 "   -0.026 2.00e-02 2.50e+03
        model="   1" pdb=" HZ  PHE A  15 "    0.090 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  68 "   -0.145 2.00e-02 2.50e+03   7.95e-02 1.90e+02
        model="   1" pdb=" CG  TYR A  68 "   -0.026 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  68 "    0.057 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  68 "    0.012 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  68 "   -0.034 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  68 "    0.013 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  68 "   -0.091 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  68 "   -0.022 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  68 "    0.172 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  68 "    0.036 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  68 "   -0.055 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  68 "    0.084 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.72 -     2.30: 320
        2.30 -     2.87: 4968
        2.87 -     3.45: 4963
        3.45 -     4.02: 6054
        4.02 -     4.60: 9321
  Nonbonded interactions: 25626
  Sorted by model distance:
  nonbonded model="   1" pdb="HD21 LEU A   3 "
            model="   1" pdb=" HE  ARG A  58 "
     model   vdw
     1.725 2.270
  nonbonded model="   1" pdb=" HZ3 LYS A  10 "
            model="   1" pdb=" OD1 ASP A  23 "
     model   vdw
     1.761 1.850
  nonbonded model="   1" pdb=" OE1 GLU A  16 "
            model="   1" pdb=" HZ2 LYS A  19 "
     model   vdw
     1.840 1.850
  nonbonded model="   1" pdb=" H   THR A   5 "
            model="   1" pdb=" OE1 GLU A   8 "
     model   vdw
     1.915 1.850
  nonbonded model="   1" pdb=" HA  HIS A 136 "
            model="   1" pdb=" HB3 HIS A 137 "
     model   vdw
     1.948 2.440
  ... (remaining 25621 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.
  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 88
        1.23 -     1.43: 377
        1.43 -     1.62: 666
        1.62 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" C   VAL A 112 "
       model="   1" pdb=" N   LYS A 113 "
    ideal  model  delta    sigma   weight residual
    1.329  1.404 -0.075 1.40e-02 5.10e+03 2.84e+01
  bond model="   1" pdb=" C   VAL A 112 "
       model="   1" pdb=" O   VAL A 112 "
    ideal  model  delta    sigma   weight residual
    1.231  1.144  0.087 2.00e-02 2.50e+03 1.90e+01
  bond model="   1" pdb=" CD  ARG A  21 "
       model="   1" pdb=" NE  ARG A  21 "
    ideal  model  delta    sigma   weight residual
    1.458  1.509 -0.051 1.40e-02 5.10e+03 1.31e+01
  bond model="   1" pdb=" CE1 HIS A 138 "
       model="   1" pdb=" NE2 HIS A 138 "
    ideal  model  delta    sigma   weight residual
    1.321  1.356 -0.035 1.00e-02 1.00e+04 1.25e+01
  bond model="   1" pdb=" CE1 HIS A 139 "
       model="   1" pdb=" NE2 HIS A 139 "
    ideal  model  delta    sigma   weight residual
    1.321  1.356 -0.035 1.00e-02 1.00e+04 1.24e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       91.85 -    99.87: 4
       99.87 -   107.88: 560
      107.88 -   115.90: 2429
      115.90 -   123.91: 944
      123.91 -   131.93: 140
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" O   LYS A 113 "
        model="   1" pdb=" C   LYS A 113 "
        model="   1" pdb=" N   PRO A 114 "
      ideal   model   delta    sigma   weight residual
     123.00  109.55   13.45 1.60e+00 3.91e-01 7.07e+01
  angle model="   1" pdb=" CA  LYS A 113 "
        model="   1" pdb=" C   LYS A 113 "
        model="   1" pdb=" N   PRO A 114 "
      ideal   model   delta    sigma   weight residual
     116.90  129.32  -12.42 1.50e+00 4.44e-01 6.85e+01
  angle model="   1" pdb=" CA  ASP A  47 "
        model="   1" pdb=" CB  ASP A  47 "
        model="   1" pdb=" CG  ASP A  47 "
      ideal   model   delta    sigma   weight residual
     112.60  105.53    7.07 1.00e+00 1.00e+00 5.00e+01
  angle model="   1" pdb=" N   PRO A 114 "
        model="   1" pdb=" CA  PRO A 114 "
        model="   1" pdb=" C   PRO A 114 "
      ideal   model   delta    sigma   weight residual
     112.10  128.83  -16.73 2.50e+00 1.60e-01 4.48e+01
  angle model="   1" pdb=" C   PRO A 114 "
        model="   1" pdb=" CA  PRO A 114 "
        model="   1" pdb=" HA  PRO A 114 "
      ideal   model   delta    sigma   weight residual
     109.00   93.44   15.56 3.00e+00 1.11e-01 2.69e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    12.99: 965
       12.99 -    25.99: 46
       25.99 -    38.98: 17
       38.98 -    51.97: 3
       51.97 -    64.96: 1
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" CA  LYS A 113 "
           model="   1" pdb=" C   LYS A 113 "
           model="   1" pdb=" N   PRO A 114 "
           model="   1" pdb=" CA  PRO A 114 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00 -143.46  -36.54     0      5.00e+00 4.00e-02 5.34e+01
  dihedral model="   1" pdb=" N   PRO A 114 "
           model="   1" pdb=" C   PRO A 114 "
           model="   1" pdb=" CA  PRO A 114 "
           model="   1" pdb=" CB  PRO A 114 "
      ideal   model   delta  harmonic     sigma   weight residual
     115.10  128.75  -13.65     0      2.50e+00 1.60e-01 2.98e+01
  dihedral model="   1" pdb=" CA  LEU A 132 "
           model="   1" pdb=" C   LEU A 132 "
           model="   1" pdb=" N   GLU A 133 "
           model="   1" pdb=" CA  GLU A 133 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  153.88   26.12     0      5.00e+00 4.00e-02 2.73e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.001 -    0.127: 151
       0.127 -    0.252: 19
       0.252 -    0.377: 4
       0.377 -    0.503: 1
       0.503 -    0.628: 1
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  PRO A 114 "
            model="   1" pdb=" N   PRO A 114 "
            model="   1" pdb=" C   PRO A 114 "
            model="   1" pdb=" CB  PRO A 114 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.72    2.09    0.63 2.00e-01 2.50e+01 9.87e+00
  chirality model="   1" pdb=" CA  LYS A 113 "
            model="   1" pdb=" N   LYS A 113 "
            model="   1" pdb=" C   LYS A 113 "
            model="   1" pdb=" CB  LYS A 113 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.90   -0.39 2.00e-01 2.50e+01 3.75e+00
  chirality model="   1" pdb=" CA  PRO A  22 "
            model="   1" pdb=" N   PRO A  22 "
            model="   1" pdb=" C   PRO A  22 "
            model="   1" pdb=" CB  PRO A  22 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.72    2.45    0.27 2.00e-01 2.50e+01 1.81e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  12 "   -0.024 2.00e-02 2.50e+03   1.19e-01 4.25e+02
        model="   1" pdb=" CG  TYR A  12 "   -0.017 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  12 "    0.039 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  12 "   -0.055 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  12 "    0.006 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  12 "    0.104 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  12 "    0.040 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  12 "   -0.209 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  12 "    0.096 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  12 "   -0.190 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  12 "   -0.039 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  12 "    0.249 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  PHE A  15 "    0.149 2.00e-02 2.50e+03   6.49e-02 1.26e+02
        model="   1" pdb=" CG  PHE A  15 "   -0.044 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 PHE A  15 "   -0.021 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 PHE A  15 "   -0.056 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 PHE A  15 "   -0.017 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 PHE A  15 "    0.017 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  PHE A  15 "    0.022 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 PHE A  15 "   -0.008 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 PHE A  15 "   -0.115 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 PHE A  15 "   -0.042 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 PHE A  15 "    0.062 2.00e-02 2.50e+03
        model="   1" pdb=" HZ  PHE A  15 "    0.053 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  PHE A  45 "    0.008 2.00e-02 2.50e+03   5.09e-02 7.76e+01
        model="   1" pdb=" CG  PHE A  45 "    0.047 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 PHE A  45 "   -0.019 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 PHE A  45 "    0.025 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 PHE A  45 "    0.009 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 PHE A  45 "   -0.035 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  PHE A  45 "    0.021 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 PHE A  45 "   -0.081 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 PHE A  45 "    0.050 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 PHE A  45 "    0.021 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 PHE A  45 "   -0.111 2.00e-02 2.50e+03
        model="   1" pdb=" HZ  PHE A  45 "    0.065 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.69 -     2.28: 273
        2.28 -     2.86: 5005
        2.86 -     3.44: 5273
        3.44 -     4.02: 6606
        4.02 -     4.60: 10040
  Nonbonded interactions: 27197
  Sorted by model distance:
  nonbonded model="   1" pdb=" OE2 GLU A  16 "
            model="   1" pdb=" HZ3 LYS A  19 "
     model   vdw
     1.695 1.850
  nonbonded model="   1" pdb=" OE1 GLU A  55 "
            model="   1" pdb=" HE  ARG A  58 "
     model   vdw
     1.723 1.850
  nonbonded model="   1" pdb=" OE2 GLU A  55 "
            model="   1" pdb="HH21 ARG A  58 "
     model   vdw
     1.731 1.850
  nonbonded model="   1" pdb="HG22 ILE A   4 "
            model="   1" pdb=" HG3 ARG A  58 "
     model   vdw
     1.799 2.440
  nonbonded model="   1" pdb="HH21 ARG A  21 "
            model="   1" pdb=" OD2 ASP A  29 "
     model   vdw
     1.814 1.850
  ... (remaining 27192 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 1.02
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 1.14 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 111
        1.23 -     1.43: 355
        1.43 -     1.63: 665
        1.63 -     1.83: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" CE1 HIS A 139 "
       model="   1" pdb=" NE2 HIS A 139 "
    ideal  model  delta    sigma   weight residual
    1.321  1.357 -0.036 1.00e-02 1.00e+04 1.27e+01
  bond model="   1" pdb=" CD  ARG A 129 "
       model="   1" pdb=" NE  ARG A 129 "
    ideal  model  delta    sigma   weight residual
    1.458  1.507 -0.049 1.40e-02 5.10e+03 1.25e+01
  bond model="   1" pdb=" CE1 HIS A 138 "
       model="   1" pdb=" NE2 HIS A 138 "
    ideal  model  delta    sigma   weight residual
    1.321  1.356 -0.035 1.00e-02 1.00e+04 1.24e+01
  bond model="   1" pdb=" CE1 HIS A 136 "
       model="   1" pdb=" NE2 HIS A 136 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.19e+01
  bond model="   1" pdb=" CE1 HIS A 137 "
       model="   1" pdb=" NE2 HIS A 137 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.16e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       94.76 -   102.25: 16
      102.25 -   109.73: 1994
      109.73 -   117.21: 1047
      117.21 -   124.69: 947
      124.69 -   132.17: 73
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" CA  ILE A  30 "
        model="   1" pdb=" CB  ILE A  30 "
        model="   1" pdb=" CG1 ILE A  30 "
      ideal   model   delta    sigma   weight residual
     110.40  120.93  -10.53 1.70e+00 3.46e-01 3.84e+01
  angle model="   1" pdb=" C   GLY A  87 "
        model="   1" pdb=" N   ASP A  88 "
        model="   1" pdb=" CA  ASP A  88 "
      ideal   model   delta    sigma   weight residual
     121.70  132.17  -10.47 1.80e+00 3.09e-01 3.38e+01
  angle model="   1" pdb=" CB  LEU A   2 "
        model="   1" pdb=" CG  LEU A   2 "
        model="   1" pdb=" CD1 LEU A   2 "
      ideal   model   delta    sigma   weight residual
     110.70  126.86  -16.16 3.00e+00 1.11e-01 2.90e+01
  angle model="   1" pdb=" CD2 LEU A   2 "
        model="   1" pdb=" CG  LEU A   2 "
        model="   1" pdb=" HG  LEU A   2 "
      ideal   model   delta    sigma   weight residual
     108.00  123.55  -15.55 3.00e+00 1.11e-01 2.69e+01
  angle model="   1" pdb=" CA  THR A  92 "
        model="   1" pdb=" CB  THR A  92 "
        model="   1" pdb=" CG2 THR A  92 "
      ideal   model   delta    sigma   weight residual
     110.50  119.15   -8.65 1.70e+00 3.46e-01 2.59e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    12.47: 935
       12.47 -    24.93: 68
       24.93 -    37.40: 24
       37.40 -    49.86: 2
       49.86 -    62.33: 3
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" CA  ARG A  21 "
           model="   1" pdb=" C   ARG A  21 "
           model="   1" pdb=" N   PRO A  22 "
           model="   1" pdb=" CA  PRO A  22 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  152.66   27.34     0      5.00e+00 4.00e-02 2.99e+01
  dihedral model="   1" pdb=" CA  ASP A  88 "
           model="   1" pdb=" C   ASP A  88 "
           model="   1" pdb=" N   TYR A  89 "
           model="   1" pdb=" CA  TYR A  89 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  152.77   27.23     0      5.00e+00 4.00e-02 2.96e+01
  dihedral model="   1" pdb=" N   THR A  92 "
           model="   1" pdb=" C   THR A  92 "
           model="   1" pdb=" CA  THR A  92 "
           model="   1" pdb=" CB  THR A  92 "
      ideal   model   delta  harmonic     sigma   weight residual
     123.40  135.66  -12.26     0      2.50e+00 1.60e-01 2.40e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.000 -    0.093: 131
       0.093 -    0.186: 37
       0.186 -    0.280: 5
       0.280 -    0.373: 1
       0.373 -    0.466: 2
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  THR A  92 "
            model="   1" pdb=" N   THR A  92 "
            model="   1" pdb=" C   THR A  92 "
            model="   1" pdb=" CB  THR A  92 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.53    2.06    0.47 2.00e-01 2.50e+01 5.43e+00
  chirality model="   1" pdb=" CB  ILE A  30 "
            model="   1" pdb=" CA  ILE A  30 "
            model="   1" pdb=" CG1 ILE A  30 "
            model="   1" pdb=" CG2 ILE A  30 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.64    2.27    0.38 2.00e-01 2.50e+01 3.54e+00
  chirality model="   1" pdb=" CA  PRO A   6 "
            model="   1" pdb=" N   PRO A   6 "
            model="   1" pdb=" C   PRO A   6 "
            model="   1" pdb=" CB  PRO A   6 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.72    2.41    0.31 2.00e-01 2.50e+01 2.42e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  PHE A  15 "    0.046 2.00e-02 2.50e+03   6.69e-02 1.34e+02
        model="   1" pdb=" CG  PHE A  15 "    0.011 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 PHE A  15 "   -0.040 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 PHE A  15 "    0.024 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 PHE A  15 "    0.022 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 PHE A  15 "   -0.043 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  PHE A  15 "    0.023 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 PHE A  15 "   -0.118 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 PHE A  15 "    0.078 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 PHE A  15 "    0.063 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 PHE A  15 "   -0.134 2.00e-02 2.50e+03
        model="   1" pdb=" HZ  PHE A  15 "    0.067 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  50 "    0.096 2.00e-02 2.50e+03   5.44e-02 8.89e+01
        model="   1" pdb=" CG  TYR A  50 "   -0.000 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  50 "   -0.040 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  50 "    0.001 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  50 "    0.007 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  50 "   -0.029 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  50 "    0.013 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  50 "    0.075 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  50 "   -0.100 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  50 "    0.021 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  50 "    0.035 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  50 "   -0.079 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  89 "   -0.045 2.00e-02 2.50e+03   5.03e-02 7.59e+01
        model="   1" pdb=" CG  TYR A  89 "    0.010 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  89 "    0.002 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  89 "    0.004 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  89 "    0.033 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  89 "    0.032 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  89 "    0.020 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  89 "   -0.133 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  89 "   -0.025 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  89 "   -0.018 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  89 "    0.062 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  89 "    0.058 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.40 -     2.04: 22
        2.04 -     2.68: 308
  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 0.96
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 1.09 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

2
        2.68 -     3.32: 6188
        3.32 -     3.96: 7029
        3.96 -     4.60: 10615
  Nonbonded interactions: 26936
  Sorted by model distance:
  nonbonded model="   1" pdb="HG23 ILE A  30 "
            model="   1" pdb="HD21 LEU A  61 "
     model   vdw
     1.399 2.440
  nonbonded model="   1" pdb="HG22 ILE A  86 "
            model="   1" pdb=" H   ASP A  88 "
     model   vdw
     1.622 2.270
  nonbonded model="   1" pdb=" OE1 GLU A  16 "
            model="   1" pdb=" HZ2 LYS A  19 "
     model   vdw
     1.794 1.850
  nonbonded model="   1" pdb="HG23 VAL A  41 "
            model="   1" pdb=" H   HIS A  43 "
     model   vdw
     1.794 2.270
  nonbonded model="   1" pdb=" H   VAL A  14 "
            model="   1" pdb="HG22 VAL A  14 "
     model   vdw
     1.807 2.270
  ... (remaining 26931 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.
  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 109
        1.23 -     1.43: 361
        1.43 -     1.63: 661
        1.63 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" CE1 HIS A  43 "
       model="   1" pdb=" NE2 HIS A  43 "
    ideal  model  delta    sigma   weight residual
    1.321  1.360 -0.039 1.00e-02 1.00e+04 1.53e+01
  bond model="   1" pdb=" CE1 HIS A 139 "
       model="   1" pdb=" NE2 HIS A 139 "
    ideal  model  delta    sigma   weight residual
    1.321  1.358 -0.037 1.00e-02 1.00e+04 1.40e+01
  bond model="   1" pdb=" CE1 HIS A 137 "
       model="   1" pdb=" NE2 HIS A 137 "
    ideal  model  delta    sigma   weight residual
    1.321  1.358 -0.037 1.00e-02 1.00e+04 1.40e+01
  bond model="   1" pdb=" CE1 HIS A 138 "
       model="   1" pdb=" NE2 HIS A 138 "
    ideal  model  delta    sigma   weight residual
    1.321  1.358 -0.037 1.00e-02 1.00e+04 1.39e+01
  bond model="   1" pdb=" CE1 HIS A 134 "
       model="   1" pdb=" NE2 HIS A 134 "
    ideal  model  delta    sigma   weight residual
    1.321  1.358 -0.037 1.00e-02 1.00e+04 1.38e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       96.94 -   104.58: 55
      104.58 -   112.22: 2530
      112.22 -   119.86: 725
      119.86 -   127.50: 756
      127.50 -   135.14: 11
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" C   ASP A  47 "
        model="   1" pdb=" N   ALA A  48 "
        model="   1" pdb=" CA  ALA A  48 "
      ideal   model   delta    sigma   weight residual
     121.70  135.14  -13.44 1.80e+00 3.09e-01 5.58e+01
  angle model="   1" pdb=" C   ALA A 115 "
        model="   1" pdb=" N   ASP A 116 "
        model="   1" pdb=" CA  ASP A 116 "
      ideal   model   delta    sigma   weight residual
     121.70  131.91  -10.21 1.80e+00 3.09e-01 3.22e+01
  angle model="   1" pdb=" N   ALA A  48 "
        model="   1" pdb=" CA  ALA A  48 "
        model="   1" pdb=" CB  ALA A  48 "
      ideal   model   delta    sigma   weight residual
     110.40  102.45    7.95 1.50e+00 4.44e-01 2.81e+01
  angle model="   1" pdb=" CA  HIS A 138 "
        model="   1" pdb=" CB  HIS A 138 "
        model="   1" pdb=" CG  HIS A 138 "
      ideal   model   delta    sigma   weight residual
     113.80  118.82   -5.02 1.00e+00 1.00e+00 2.52e+01
  angle model="   1" pdb=" ND1 HIS A 138 "
        model="   1" pdb=" CG  HIS A 138 "
        model="   1" pdb=" CD2 HIS A 138 "
      ideal   model   delta    sigma   weight residual
     106.10  110.77   -4.67 1.00e+00 1.00e+00 2.18e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    17.41: 981
       17.41 -    34.82: 41
       34.82 -    52.24: 5
       52.24 -    69.65: 2
       69.65 -    87.06: 3
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" CA  HIS A 138 "
           model="   1" pdb=" C   HIS A 138 "
           model="   1" pdb=" N   HIS A 139 "
           model="   1" pdb=" CA  HIS A 139 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  149.23   30.77     0      5.00e+00 4.00e-02 3.79e+01
  dihedral model="   1" pdb=" CA  HIS A 137 "
           model="   1" pdb=" C   HIS A 137 "
           model="   1" pdb=" N   HIS A 138 "
           model="   1" pdb=" CA  HIS A 138 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  151.66   28.34     0      5.00e+00 4.00e-02 3.21e+01
  dihedral model="   1" pdb=" CA  GLY A  73 "
           model="   1" pdb=" C   GLY A  73 "
           model="   1" pdb=" N   ASP A  74 "
           model="   1" pdb=" CA  ASP A  74 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  152.88   27.12     0      5.00e+00 4.00e-02 2.94e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.001 -    0.070: 103
       0.070 -    0.138: 47
       0.138 -    0.207: 16
       0.207 -    0.275: 6
       0.275 -    0.344: 4
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  SER A  46 "
            model="   1" pdb=" N   SER A  46 "
            model="   1" pdb=" C   SER A  46 "
            model="   1" pdb=" CB  SER A  46 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.17    0.34 2.00e-01 2.50e+01 2.96e+00
  chirality model="   1" pdb=" CA  ASP A  88 "
            model="   1" pdb=" N   ASP A  88 "
            model="   1" pdb=" C   ASP A  88 "
            model="   1" pdb=" CB  ASP A  88 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.22    0.29 2.00e-01 2.50e+01 2.08e+00
  chirality model="   1" pdb=" CA  PRO A   6 "
            model="   1" pdb=" N   PRO A   6 "
            model="   1" pdb=" C   PRO A   6 "
            model="   1" pdb=" CB  PRO A   6 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.72    2.44    0.28 2.00e-01 2.50e+01 1.90e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  PHE A  15 "    0.136 2.00e-02 2.50e+03   5.26e-02 8.29e+01
        model="   1" pdb=" CG  PHE A  15 "   -0.022 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 PHE A  15 "   -0.034 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 PHE A  15 "   -0.035 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 PHE A  15 "   -0.002 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 PHE A  15 "   -0.002 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  PHE A  15 "    0.023 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 PHE A  15 "   -0.063 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 PHE A  15 "   -0.065 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 PHE A  15 "    0.003 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 PHE A  15 "    0.003 2.00e-02 2.50e+03
        model="   1" pdb=" HZ  PHE A  15 "    0.056 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A 111 "   -0.123 2.00e-02 2.50e+03   5.10e-02 7.81e+01
        model="   1" pdb=" CG  TYR A 111 "    0.032 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A 111 "    0.017 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A 111 "    0.043 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A 111 "    0.016 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A 111 "   -0.008 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A 111 "   -0.001 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A 111 "   -0.051 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A 111 "    0.008 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A 111 "    0.084 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A 111 "    0.028 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A 111 "   -0.046 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  68 "   -0.049 2.00e-02 2.50e+03   4.01e-02 4.83e+01
        model="   1" pdb=" CG  TYR A  68 "    0.038 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  68 "    0.015 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  68 "    0.023 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  68 "   -0.017 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  68 "   -0.025 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  68 "   -0.010 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  68 "    0.069 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  68 "    0.022 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  68 "    0.045 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  68 "   -0.044 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  68 "   -0.067 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.66 -     2.25: 200
        2.25 -     2.84: 4700
        2.84 -     3.43: 5296
        3.43 -     4.01: 6561
        4.01 -     4.60: 9796
  Nonbonded interactions: 26553
  Sorted by model distance:
  nonbonded model="   1" pdb="HG23 VAL A  41 "
            model="   1" pdb=" H   HIS A  43 "
     model   vdw
     1.665 2.270
  nonbonded model="   1" pdb=" H   ASP A 116 "
            model="   1" pdb=" HD3 PRO A 117 "
     model   vdw
     1.716 2.270
  nonbonded model="   1" pdb=" HZ3 LYS A  63 "
            model="   1" pdb=" OD2 ASP A 103 "
     model   vdw
     1.866 1.850
  nonbonded model="   1" pdb=" HH  TYR A  81 "
            model="   1" pdb=" OE1 GLU A  84 "
     model   vdw
     1.873 1.850
  nonbonded model="   1" pdb=" O   GLU A  55 "
            model="   1" pdb=" H   LEU A  59 "
     model   vdw
     1.919 1.850
  ... (remaining 26548 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.
  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 115
        1.23 -     1.43: 351
        1.43 -     1.62: 664
        1.62 -     1.82: 5
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" C   ASP A 116 "
       model="   1" pdb=" N   PRO A 117 "
    ideal  model  delta    sigma   weight residual
    1.341  1.451 -0.110 1.60e-02 3.91e+03 4.73e+01
  bond model="   1" pdb=" CA  ASP A 116 "
       model="   1" pdb=" CB  ASP A 116 "
    ideal  model  delta    sigma   weight residual
    1.530  1.652 -0.122 2.00e-02 2.50e+03 3.71e+01
  bond model="   1" pdb=" N   PRO A 117 "
       model="   1" pdb=" CA  PRO A 117 "
    ideal  model  delta    sigma   weight residual
    1.466  1.544 -0.078 1.50e-02 4.44e+03 2.69e+01
  bond model="   1" pdb=" CA  ASP A 116 "
       model="   1" pdb=" C   ASP A 116 "
    ideal  model  delta    sigma   weight residual
    1.525  1.617 -0.092 2.10e-02 2.27e+03 1.93e+01
  bond model="   1" pdb=" N   PRO A 117 "
       model="   1" pdb=" CD  PRO A 117 "
    ideal  model  delta    sigma   weight residual
    1.473  1.525 -0.052 1.40e-02 5.10e+03 1.38e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       96.44 -   104.80: 67
      104.80 -   113.16: 2665
      113.16 -   121.52: 900
      121.52 -   129.88: 437
      129.88 -   138.24: 8
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" CA  ASP A 116 "
        model="   1" pdb=" C   ASP A 116 "
        model="   1" pdb=" N   PRO A 117 "
      ideal   model   delta    sigma   weight residual
     116.90  138.24  -21.34 1.50e+00 4.44e-01 2.02e+02
  angle model="   1" pdb=" CA  ASP A 116 "
        model="   1" pdb=" C   ASP A 116 "
        model="   1" pdb=" O   ASP A 116 "
      ideal   model   delta    sigma   weight residual
     120.80  106.35   14.45 1.70e+00 3.46e-01 7.23e+01
  angle model="   1" pdb=" C   PRO A 117 "
        model="   1" pdb=" N   ASP A 118 "
        model="   1" pdb=" CA  ASP A 118 "
      ideal   model   delta    sigma   weight residual
     121.70  133.25  -11.55 1.80e+00 3.09e-01 4.11e+01
  angle model="   1" pdb=" C   ASP A 116 "
        model="   1" pdb=" N   PRO A 117 "
        model="   1" pdb=" CD  PRO A 117 "
      ideal   model   delta    sigma   weight residual
     125.00  101.21   23.79 4.10e+00 5.95e-02 3.37e+01
  angle model="   1" pdb=" O   ASP A 116 "
        model="   1" pdb=" C   ASP A 116 "
        model="   1" pdb=" N   PRO A 117 "
      ideal   model   delta    sigma   weight residual
     123.00  114.31    8.69 1.60e+00 3.91e-01 2.95e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    21.66: 981
       21.66 -    43.31: 39
       43.31 -    64.97: 9
       64.97 -    86.63: 2
       86.63 -   108.29: 1
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" CA  ASP A  47 "
           model="   1" pdb=" C   ASP A  47 "
           model="   1" pdb=" N   ALA A  48 "
           model="   1" pdb=" CA  ALA A  48 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00   71.71  108.29     0      5.00e+00 4.00e-02 4.69e+02
  dihedral model="   1" pdb=" CA  ASP A 116 "
           model="   1" pdb=" C   ASP A 116 "
           model="   1" pdb=" N   PRO A 117 "
           model="   1" pdb=" CA  PRO A 117 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  100.00   80.00     0      5.00e+00 4.00e-02 2.56e+02
  dihedral model="   1" pdb=" CA  LEU A 119 "
           model="   1" pdb=" C   LEU A 119 "
           model="   1" pdb=" N   GLU A 120 "
           model="   1" pdb=" CA  GLU A 120 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  124.45   55.55     0      5.00e+00 4.00e-02 1.23e+02
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.000 -    0.142: 157
       0.142 -    0.283: 10
       0.283 -    0.425: 8
       0.425 -    0.567: 0
       0.567 -    0.708: 1
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  ASP A 116 "
            model="   1" pdb=" N   ASP A 116 "
            model="   1" pdb=" C   ASP A 116 "
            model="   1" pdb=" CB  ASP A 116 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    3.22   -0.71 2.00e-01 2.50e+01 1.25e+01
  chirality model="   1" pdb=" CA  PRO A 117 "
            model="   1" pdb=" N   PRO A 117 "
            model="   1" pdb=" C   PRO A 117 "
            model="   1" pdb=" CB  PRO A 117 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.72    3.14   -0.42 2.00e-01 2.50e+01 4.42e+00
  chirality model="   1" pdb=" CA  ASP A  74 "
            model="   1" pdb=" N   ASP A  74 "
            model="   1" pdb=" C   ASP A  74 "
            model="   1" pdb=" CB  ASP A  74 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.19    0.32 2.00e-01 2.50e+01 2.50e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  91 "   -0.206 2.00e-02 2.50e+03   1.10e-01 3.62e+02
        model="   1" pdb=" CG  TYR A  91 "   -0.025 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  91 "    0.036 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  91 "    0.035 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  91 "    0.050 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  91 "    0.052 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  91 "    0.008 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  91 "   -0.263 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  91 "    0.067 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  91 "    0.064 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  91 "    0.088 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  91 "    0.094 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  68 "   -0.097 2.00e-02 2.50e+03   4.42e-02 5.85e+01
        model="   1" pdb=" CG  TYR A  68 "   -0.005 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  68 "    0.016 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  68 "    0.024 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  68 "    0.015 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  68 "    0.005 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  68 "   -0.033 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  68 "   -0.072 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  68 "    0.029 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  68 "    0.057 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  68 "    0.046 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  68 "    0.017 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" C   ASP A 116 "    0.116 5.00e-02 4.00e+02   1.77e-01 5.02e+01
        model="   1" pdb=" N   PRO A 117 "   -0.306 5.00e-02 4.00e+02
        model="   1" pdb=" CA  PRO A 117 "    0.113 5.00e-02 4.00e+02
        model="   1" pdb=" CD  PRO A 117 "    0.076 5.00e-02 4.00e+02
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.65 -     2.24: 199
        2.24 -     2.83: 4647
        2.83 -     3.42: 5482
        3.42 -     4.01: 6689
        4.01 -     4.60: 10029
  Nonbonded interactions: 27046
  Sorted by model distance:
  nonbonded model="   1" pdb="HG23 VAL A  41 "
            model="   1" pdb=" H   HIS A  43 "
     model   vdw
     1.653 2.270
  nonbonded model="   1" pdb=" OE2 GLU A  24 "
            model="   1" pdb=" HZ2 LYS A  27 "
     model   vdw
     1.854 1.850
  nonbonded model="   1" pdb="HD23 LEU A  99 "
            model="   1" pdb="HG11 VAL A 104 "
     model   vdw
     1.867 2.440
  nonbonded model="   1" pdb=" HD2 PHE A  45 "
            model="   1" pdb=" HH  TYR A 111 "
     model   vdw
     1.882 2.100
  nonbonded model="   1" pdb=" HB3 GLU A  84 "
            model="   1" pdb=" H   LYS A  85 "
     model   vdw
     1.893 2.270
  ... (remaining 27041 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 0.81
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 0.94 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 89
        1.23 -     1.43: 374
        1.43 -     1.63: 668
        1.63 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" CE1 HIS A  43 "
       model="   1" pdb=" NE2 HIS A  43 "
    ideal  model  delta    sigma   weight residual
    1.321  1.361 -0.040 1.00e-02 1.00e+04 1.57e+01
  bond model="   1" pdb=" CE1 HIS A 135 "
       model="   1" pdb=" NE2 HIS A 135 "
    ideal  model  delta    sigma   weight residual
    1.321  1.357 -0.036 1.00e-02 1.00e+04 1.32e+01
  bond model="   1" pdb=" CE1 HIS A 134 "
       model="   1" pdb=" NE2 HIS A 134 "
    ideal  model  delta    sigma   weight residual
    1.321  1.357 -0.036 1.00e-02 1.00e+04 1.31e+01
  bond model="   1" pdb=" CE1 HIS A 136 "
       model="   1" pdb=" NE2 HIS A 136 "
    ideal  model  delta    sigma   weight residual
    1.321  1.357 -0.036 1.00e-02 1.00e+04 1.27e+01
  bond model="   1" pdb=" CE1 HIS A 139 "
       model="   1" pdb=" NE2 HIS A 139 "
    ideal  model  delta    sigma   weight residual
    1.321  1.356 -0.035 1.00e-02 1.00e+04 1.23e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       97.89 -   105.18: 98
      105.18 -   112.47: 2516
      112.47 -   119.76: 672
      119.76 -   127.06: 774
      127.06 -   134.35: 17
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" CA  ASP A 103 "
        model="   1" pdb=" CB  ASP A 103 "
        model="   1" pdb=" CG  ASP A 103 "
      ideal   model   delta    sigma   weight residual
     112.60  117.96   -5.36 1.00e+00 1.00e+00 2.88e+01
  angle model="   1" pdb=" N   HIS A 138 "
        model="   1" pdb=" CA  HIS A 138 "
        model="   1" pdb=" C   HIS A 138 "
      ideal   model   delta    sigma   weight residual
     111.00  124.84  -13.84 2.80e+00 1.28e-01 2.44e+01
  angle model="   1" pdb=" C   ALA A  48 "
        model="   1" pdb=" N   GLU A  49 "
        model="   1" pdb=" CA  GLU A  49 "
      ideal   model   delta    sigma   weight residual
     121.70  130.42   -8.72 1.80e+00 3.09e-01 2.34e+01
  angle model="   1" pdb=" CA  LYS A 113 "
        model="   1" pdb=" C   LYS A 113 "
        model="   1" pdb=" N   PRO A 114 "
      ideal   model   delta    sigma   weight residual
     116.90  123.90   -7.00 1.50e+00 4.44e-01 2.18e+01
  angle model="   1" pdb=" ND1 HIS A 134 "
        model="   1" pdb=" CG  HIS A 134 "
        model="   1" pdb=" CD2 HIS A 134 "
      ideal   model   delta    sigma   weight residual
     106.10  110.59   -4.49 1.00e+00 1.00e+00 2.02e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    15.90: 962
       15.90 -    31.81: 43
       31.81 -    47.71: 15
       47.71 -    63.61: 9
       63.61 -    79.52: 3
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" CA  HIS A 137 "
           model="   1" pdb=" C   HIS A 137 "
           model="   1" pdb=" N   HIS A 138 "
           model="   1" pdb=" CA  HIS A 138 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  127.45   52.55     0      5.00e+00 4.00e-02 1.10e+02
  dihedral model="   1" pdb=" CA  HIS A 138 "
           model="   1" pdb=" C   HIS A 138 "
           model="   1" pdb=" N   HIS A 139 "
           model="   1" pdb=" CA  HIS A 139 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  128.46   51.54     0      5.00e+00 4.00e-02 1.06e+02
  dihedral model="   1" pdb=" CA  ASP A 118 "
           model="   1" pdb=" C   ASP A 118 "
           model="   1" pdb=" N   LEU A 119 "
           model="   1" pdb=" CA  LEU A 119 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  137.72   42.28     0      5.00e+00 4.00e-02 7.15e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.000 -    0.122: 130
       0.122 -    0.245: 35
       0.245 -    0.367: 9
       0.367 -    0.489: 1
       0.489 -    0.611: 1
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  ASP A 118 "
            model="   1" pdb=" N   ASP A 118 "
            model="   1" pdb=" C   ASP A 118 "
            model="   1" pdb=" CB  ASP A 118 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    1.90    0.61 2.00e-01 2.50e+01 9.33e+00
  chirality model="   1" pdb=" CA  GLN A 100 "
            model="   1" pdb=" N   GLN A 100 "
            model="   1" pdb=" C   GLN A 100 "
            model="   1" pdb=" CB  GLN A 100 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.13    0.38 2.00e-01 2.50e+01 3.65e+00
  chirality model="   1" pdb=" CA  TYR A  68 "
            model="   1" pdb=" N   TYR A  68 "
            model="   1" pdb=" C   TYR A  68 "
            model="   1" pdb=" CB  TYR A  68 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.18    0.33 2.00e-01 2.50e+01 2.72e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  81 "   -0.098 2.00e-02 2.50e+03   5.45e-02 8.90e+01
        model="   1" pdb=" CG  TYR A  81 "    0.002 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  81 "    0.003 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  81 "    0.045 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  81 "    0.015 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  81 "   -0.025 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  81 "   -0.027 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  81 "   -0.015 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  81 "   -0.004 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  81 "    0.121 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  81 "    0.051 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  81 "   -0.070 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  68 "    0.043 2.00e-02 2.50e+03   4.47e-02 5.99e+01
        model="   1" pdb=" CG  TYR A  68 "   -0.019 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  68 "   -0.029 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  68 "    0.012 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  68 "    0.008 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  68 "   -0.034 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  68 "   -0.007 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  68 "    0.060 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  68 "   -0.059 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  68 "    0.064 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  68 "    0.042 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  68 "   -0.081 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  12 "    0.109 2.00e-02 2.50e+03   4.38e-02 5.76e+01
        model="   1" pdb=" CG  TYR A  12 "   -0.016 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  12 "   -0.023 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  12 "   -0.025 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  12 "   -0.012 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  12 "   -0.013 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  12 "    0.005 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  12 "    0.080 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  12 "   -0.035 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  12 "   -0.038 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  12 "   -0.015 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  12 "   -0.017 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.82 -     2.38: 817
        2.38 -     2.93: 5008
        2.93 -     3.49: 5164
        3.49 -     4.04: 6631
        4.04 -     4.60: 9779
  Nonbonded interactions: 27399
  Sorted by model distance:
  nonbonded model="   1" pdb=" HA  TYR A  68 "
            model="   1" pdb="HD12 ILE A  71 "
     model   vdw
     1.821 2.440
  nonbonded model="   1" pdb=" OE2 GLU A  24 "
            model="   1" pdb=" HZ2 LYS A  27 "
     model   vdw
     1.825 1.850
  nonbonded model="   1" pdb=" OE2 GLU A  16 "
            model="   1" pdb=" HZ2 LYS A  19 "
     model   vdw
     1.828 1.850
  nonbonded model="   1" pdb=" OD1 ASP A  95 "
            model="   1" pdb=" H   SER A  97 "
     model   vdw
     1.854 1.850
  nonbonded model="   1" pdb=" OD1 ASP A  44 "
            model="   1" pdb=" H   SER A  46 "
     model   vdw
     1.867 1.850
  ... (remaining 27394 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000 (Z=  0.001)
  Max. delta:    0.073 (Z=  3.626)
  Mean delta:    0.018 (Z=  0.940)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  98  SER  C
   A  98  SER  CA
   A  98  SER  CB        110.10    97.97    12.13  1.90e+00  4.08e+01   6.4*sigma
   A  30  ILE  CA
   A  30  ILE  CB
   A  30  ILE  CG1       110.40   120.26    -9.86  1.70e+00  3.36e+01   5.8*sigma
   A 101  LYS  CA
   A 101  LYS  C
   A 102  PRO  N         116.90   125.37    -8.47  1.50e+00  3.19e+01   5.6*sigma
   A  61  LEU  C
   A  61  LEU  CA
   A  61  LEU  CB        110.10    99.55    10.55  1.90e+00  3.08e+01   5.6*sigma
   A  15  PHE  CA
   A  15  PHE  CB
   A  15  PHE  CG        113.80   108.44     5.36  1.00e+00  2.87e+01   5.4*sigma
   A  52  PRO  N
   A  52  PRO  CA
   A  52  PRO  C         112.10   125.44   -13.34  2.50e+00  2.85e+01   5.3*sigma
   A  92  THR  CA
   A  92  THR  CB
   A  92  THR  CG2       110.50   119.16    -8.66  1.70e+00  2.59e+01   5.1*sigma
   A  93  LEU  N
   A  93  LEU  CA
   A  93  LEU  CB        110.50   119.03    -8.53  1.70e+00  2.52e+01   5.0*sigma
   A  92  THR  CA
   A  92  THR  C
   A  92  THR  O         120.80   112.41     8.39  1.70e+00  2.44e+01   4.9*sigma
   A   2  LEU  CB
   A   2  LEU  CG
   A   2  LEU  CD1       110.70   125.31   -14.61  3.00e+00  2.37e+01   4.9*sigma
   A  86  ILE  CA
   A  86  ILE  CB
   A  86  ILE  CG2       110.50   118.55    -8.05  1.70e+00  2.24e+01   4.7*sigma
   A  86  ILE  C
   A  87  GLY  N
   A  87  GLY  CA        121.70   130.22    -8.52  1.80e+00  2.24e+01   4.7*sigma
   A  58  ARG  NE
   A  58  ARG  CZ
   A  58  ARG  NH2       119.20   123.43    -4.23  9.00e-01  2.21e+01   4.7*sigma
   A  97  SER  CA
   A  97  SER  CB
   A  97  SER  OG        111.10   120.47    -9.37  2.00e+00  2.20e+01   4.7*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.75    -4.65  1.00e+00  2.16e+01   4.6*sigma
   A  37  ILE  CA
   A  37  ILE  C
   A  38  ILE  N         116.20   125.37    -9.17  2.00e+00  2.10e+01   4.6*sigma
   A  92  THR  CA
   A  92  THR  C
   A  93  LEU  N         116.20   125.35    -9.15  2.00e+00  2.09e+01   4.6*sigma
   A  76  SER  N
   A  76  SER  CA
   A  76  SER  CB        110.50   102.78     7.72  1.70e+00  2.06e+01   4.5*sigma
   A 134  HIS  ND1
   A 134  HIS  CG
   A 134  HIS  CD2       106.10   110.54    -4.44  1.00e+00  1.97e+01   4.4*sigma
   A  92  THR  N
   A  92  THR  CA
   A  92  THR  C         111.00    98.65    12.35  2.80e+00  1.95e+01   4.4*sigma
   A 136  HIS  ND1
   A 136  HIS  CG
   A 136  HIS  CD2       106.10   110.51    -4.41  1.00e+00  1.95e+01   4.4*sigma
   A   9  LEU  C
   A   9  LEU  CA
   A   9  LEU  CB        110.10   101.91     8.19  1.90e+00  1.86e+01   4.3*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.41    -4.31  1.00e+00  1.86e+01   4.3*sigma
   A  37  ILE  CA
   A  37  ILE  CB
   A  37  ILE  CG1       110.40   117.67    -7.27  1.70e+00  1.83e+01   4.3*sigma
   A 122  ILE  CA
   A 122  ILE  C
   A 123  GLU  N         116.20   124.73    -8.53  2.00e+00  1.82e+01   4.3*sigma
   A  86  ILE  C
   A  86  ILE  CA
   A  86  ILE  CB        111.60   120.10    -8.50  2.00e+00  1.81e+01   4.2*sigma
   A 138  HIS  ND1
   A 138  HIS  CG
   A 138  HIS  CD2       106.10   110.31    -4.21  1.00e+00  1.78e+01   4.2*sigma
   A 139  HIS  ND1
   A 139  HIS  CE1
   A 139  HIS  NE2       108.40   112.52    -4.12  1.00e+00  1.70e+01   4.1*sigma
   A  62  LEU  CD1
   A  62  LEU  CG
   A  62  LEU  CD2       110.80   101.84     8.96  2.20e+00  1.66e+01   4.1*sigma
   A  78  ILE  CB
   A  78  ILE  CG1
   A  78  ILE  CD1       113.80   122.35    -8.55  2.10e+00  1.66e+01   4.1*sigma
   A  97  SER  N
   A  97  SER  CA
   A  97  SER  CB        110.50   117.41    -6.91  1.70e+00  1.65e+01   4.1*sigma
   A 101  LYS  O
   A 101  LYS  C
   A 102  PRO  N         123.00   116.54     6.46  1.60e+00  1.63e+01   4.0*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   110.12    -4.02  1.00e+00  1.61e+01   4.0*sigma

  Min. delta:    0.003 (Z=  0.002)
  Max. delta:   14.608 (Z=  6.385)
  Mean delta:    2.797 (Z=  1.481)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 117  PRO  CA
   A 117  PRO  C
   A 118  ASP  N
   A 118  ASP  CA        180.00   145.47    34.53  5.00e+00  4.77e+01   6.9*sigma
   A 119  LEU  CA
   A 119  LEU  C
   A 120  GLU  N
   A 120  GLU  CA        180.00   150.42    29.58  5.00e+00  3.50e+01   5.9*sigma
   A 130  SER  CA
   A 130  SER  C
   A 131  ILE  N
   A 131  ILE  CA        180.00   153.75    26.25  5.00e+00  2.76e+01   5.2*sigma
   A  92  THR  CA
   A  92  THR  C
   A  93  LEU  N
   A  93  LEU  CA        180.00   156.03    23.97  5.00e+00  2.30e+01   4.8*sigma
   A 129  ARG  CA
   A 129  ARG  C
   A 130  SER  N
   A 130  SER  CA        180.00   157.20    22.80  5.00e+00  2.08e+01   4.6*sigma
   A  51  ILE  CA
   A  51  ILE  C
   A  52  PRO  N
   A  52  PRO  CA        180.00  -159.08   -20.92  5.00e+00  1.75e+01   4.2*sigma
   A 128  MET  CA
   A 128  MET  C
   A 129  ARG  N
   A 129  ARG  CA        180.00   159.45    20.55  5.00e+00  1.69e+01   4.1*sigma

  Min. delta:    0.025
  Max. delta:   90.197
  Mean delta:   12.636

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.647
  Mean delta:    0.156

                       ----------Planar groups----------                       

  atoms                 rms_deltas   delta_max    residual   deviation
   A  89  TYR  CB
   A  89  TYR  CG
   A  89  TYR  CD1
   A  89  TYR  CD2
   A  89  TYR  CE1
   A  89  TYR  CE2
   A  89  TYR  CZ
   A  89  TYR  OH            0.130       0.224      338.18  11.2*sigma

  Min. delta:    0.000
  Max. delta:    0.130
  Mean delta:    0.019

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

                       ----------Angle outliers----------                      

   A   2  LEU  HG , Angle CB-CG-HG, observed: 96.504, delta from target: 12.496
   A  62  LEU  HG , Angle CD1-CG-HG, observed: 121.518, delta from target: -13.518
   A  52  PRO  HA , Angle C-CA-HA, observed: 92.743, delta from target: 16.257
   A  93  LEU  HA , Angle N-CA-HA, observed: 93.366, delta from target: 16.634

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.013   0.073   2241  Z= 0.669
    Angle     :  2.442  16.634   4077  Z= 1.078
    Chirality :  0.156   0.647    176
    Planarity :  0.016   0.127    326
    Dihedral  : 11.594  90.197    768
    Min Nonbonded Distance : 1.702
  
  Molprobity Statistics.
    All-atom Clashscore : 16.69
    Ramachandran Plot:
      Outliers :  7.30 %
      Allowed  :  8.76 %
      Favored  : 83.94 %
    Rotamer:
      Outliers :  1.61 %
      Allowed  :  2.42 %
      Favored  : 95.97 %
    Cbeta Deviations :  5.30 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.00 %
      Twisted Proline : 0.00 %
      Twisted General : 0.76 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -2.37 (0.67), residues: 137
    helix:  0.19 (0.57), residues: 78
    sheet:  None (None), residues: 0
    loop : -4.26 (0.62), residues: 59
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.009   0.002   HIS A 138 
   PHE   0.181   0.046   PHE A  67 
   TYR   0.275   0.031   TYR A  89 
   ARG   0.058   0.008   ARG A  58 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.009   0.002   HIS A 138 
   PHE   0.083   0.032   PHE A  45 
   TYR   0.224   0.029   TYR A  89 
   ARG   0.035   0.005   ARG A  58 

                     ----------Asn/Gln/His flips----------                     

   A  66  GLN
   A  43  HIS

=================================== Summary ===================================

  Ramachandran outliers =   7.30 %
                favored =  83.94 %
  Rotamer outliers      =   1.61 %
  C-beta deviations     =     7
  Clashscore            =  16.69
  RMS(bonds)            =   0.0129
  RMS(angles)           =   2.44
  MolProbity score      =   2.56

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py

End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  atoms                 ideal   model   delta   sigma   slack  residual   deviation
   A  81  TYR  C
   A  82  THR  N           1.33     1.41    -0.08  1.40e-02  3.47e+01   5.9*sigma
   A  92  THR  C
   A  92  THR  O           1.23     1.15     0.08  2.00e-02  1.80e+01   4.2*sigma

  Min. delta:    0.000 (Z=  0.001)
  Max. delta:    0.085 (Z=  5.888)
  Mean delta:    0.017 (Z=  0.910)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  30  ILE  CA
   A  30  ILE  CB
   A  30  ILE  CG1       110.40   129.52   -19.12  1.70e+00  1.26e+02  11.2*sigma
   A  30  ILE  CA
   A  30  ILE  CB
   A  30  ILE  CG2       110.50    95.26    15.24  1.70e+00  8.03e+01   9.0*sigma
   A  92  THR  CA
   A  92  THR  C
   A  93  LEU  N         116.20   131.19   -14.99  2.00e+00  5.62e+01   7.5*sigma
   A  81  TYR  C
   A  81  TYR  CA
   A  81  TYR  CB        110.10    95.88    14.22  1.90e+00  5.60e+01   7.5*sigma
   A 116  ASP  CA
   A 116  ASP  C
   A 117  PRO  N         116.90   127.30   -10.40  1.50e+00  4.81e+01   6.9*sigma
   A  92  THR  O
   A  92  THR  C
   A  93  LEU  N         123.00   112.17    10.83  1.60e+00  4.58e+01   6.8*sigma
   A  82  THR  N
   A  82  THR  CA
   A  82  THR  CB        111.50   122.20   -10.70  1.70e+00  3.96e+01   6.3*sigma
   A   2  LEU  CD1
   A   2  LEU  CG
   A   2  LEU  CD2       110.80   123.26   -12.46  2.20e+00  3.21e+01   5.7*sigma
   A   2  LEU  C
   A   3  LEU  N
   A   3  LEU  CA        121.70   131.62    -9.92  1.80e+00  3.03e+01   5.5*sigma
   A  53  LEU  CA
   A  53  LEU  C
   A  54  PRO  N         116.90   123.73    -6.83  1.50e+00  2.07e+01   4.6*sigma
   A 116  ASP  O
   A 116  ASP  C
   A 117  PRO  N         123.00   115.95     7.05  1.60e+00  1.94e+01   4.4*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.49    -4.39  1.00e+00  1.93e+01   4.4*sigma
   A 134  HIS  ND1
   A 134  HIS  CG
   A 134  HIS  CD2       106.10   110.44    -4.34  1.00e+00  1.89e+01   4.3*sigma
   A   2  LEU  N
   A   2  LEU  CA
   A   2  LEU  CB        110.50   103.33     7.17  1.70e+00  1.78e+01   4.2*sigma
   A  89  TYR  CA
   A  89  TYR  CB
   A  89  TYR  CG        113.90   121.37    -7.47  1.80e+00  1.72e+01   4.2*sigma
   A  93  LEU  N
   A  93  LEU  CA
   A  93  LEU  C         111.00   122.56   -11.56  2.80e+00  1.70e+01   4.1*sigma
   A  21  ARG  CA
   A  21  ARG  C
   A  22  PRO  N         116.90   123.03    -6.13  1.50e+00  1.67e+01   4.1*sigma
   A 138  HIS  ND1
   A 138  HIS  CG
   A 138  HIS  CD2       106.10   110.18    -4.08  1.00e+00  1.66e+01   4.1*sigma
   A 103  ASP  N
   A 103  ASP  CA
   A 103  ASP  CB        110.50   103.60     6.90  1.70e+00  1.65e+01   4.1*sigma
   A 113  LYS  CA
   A 113  LYS  C
   A 114  PRO  N         116.90   122.98    -6.08  1.50e+00  1.64e+01   4.1*sigma
   A 136  HIS  ND1
   A 136  HIS  CG
   A 136  HIS  CD2       106.10   110.13    -4.03  1.00e+00  1.62e+01   4.0*sigma

  Min. delta:    0.000 (Z=  0.000)
  Max. delta:   19.119 (Z= 11.246)
  Mean delta:    2.414 (Z=  1.333)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 135  HIS  CA
   A 135  HIS  C
   A 136  HIS  N
   A 136  HIS  CA        180.00   144.22    35.78  5.00e+00  5.12e+01   7.2*sigma
   A 136  HIS  CA
   A 136  HIS  C
   A 137  HIS  N
   A 137  HIS  CA        180.00   149.79    30.21  5.00e+00  3.65e+01   6.0*sigma
   A 137  HIS  CA
   A 137  HIS  C
   A 138  HIS  N
   A 138  HIS  CA        180.00   154.73    25.27  5.00e+00  2.55e+01   5.1*sigma
   A 117  PRO  CA
   A 117  PRO  C
   A 118  ASP  N
   A 118  ASP  CA        180.00   155.20    24.80  5.00e+00  2.46e+01   5.0*sigma
   A  92  THR  CA
   A  92  THR  C
   A  93  LEU  N
   A  93  LEU  CA        180.00  -155.80   -24.20  5.00e+00  2.34e+01   4.8*sigma

  Min. delta:    0.001
  Max. delta:   88.889
  Mean delta:   12.108

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.540
  Mean delta:    0.106

                       ----------Planar groups----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.057
  Mean delta:    0.012

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

                       ----------Angle outliers----------                      

   A  81  TYR  HA , Angle CB-CA-HA, observed: 121.250, delta from target: -12.250
   A  81  TYR  HA , Angle N-CA-HA, observed: 97.466, delta from target: 12.534
   A  82  THR  HA , Angle N-CA-HA, observed: 93.968, delta from target: 16.032
   A  93  LEU  HA , Angle N-CA-HA, observed: 93.649, delta from target: 16.351
   A  30  ILE  HB , Angle CG2-CB-HB, observed: 131.188, delta from target: -22.188

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.012   0.085   2241  Z= 0.648
    Angle     :  2.141  22.188   4077  Z= 0.967
    Chirality :  0.106   0.540    176
    Planarity :  0.010   0.057    326
    Dihedral  : 10.899  88.889    768
    Min Nonbonded Distance : 1.622
  
  Molprobity Statistics.
    All-atom Clashscore : 9.92
    Ramachandran Plot:
      Outliers :  1.46 %
      Allowed  : 15.33 %
      Favored  : 83.21 %
    Rotamer:
      Outliers :  0.81 %
      Allowed  :  2.42 %
      Favored  : 96.77 %
    Cbeta Deviations :  3.03 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.00 %
      Twisted Proline : 0.00 %
      Twisted General : 1.53 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -1.05 (0.72), residues: 137
    helix:  1.40 (0.57), residues: 66
    sheet:  None (None), residues: 0
    loop : -2.97 (0.74), residues: 71
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.005   0.002   HIS A 139 
   PHE   0.073   0.019   PHE A  45 
   TYR   0.072   0.018   TYR A  81 
   ARG   0.030   0.007   ARG A  58 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.005   0.002   HIS A 139 
   PHE   0.036   0.013   PHE A  45 
   TYR   0.059   0.017   TYR A  81 
   ARG   0.015   0.004   ARG A  58 

                     ----------Asn/Gln/His flips----------                     

   A 135  HIS
   A 136  HIS

=================================== Summary ===================================

  Ramachandran outliers =   1.46 %
                favored =  83.21 %
  Rotamer outliers      =   0.81 %
  C-beta deviations     =     4
  Clashscore            =   9.92
  RMS(bonds)            =   0.0123
  RMS(angles)           =   2.14
  MolProbity score      =   2.21

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py

End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000 (Z=  0.001)
  Max. delta:    0.049 (Z=  3.563)
  Mean delta:    0.015 (Z=  0.822)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  30  ILE  CA
   A  30  ILE  CB
   A  30  ILE  CG1       110.40   120.93   -10.53  1.70e+00  3.84e+01   6.2*sigma
   A  87  GLY  C
   A  88  ASP  N
   A  88  ASP  CA        121.70   132.17   -10.47  1.80e+00  3.38e+01   5.8*sigma
   A   2  LEU  CB
   A   2  LEU  CG
   A   2  LEU  CD1       110.70   126.86   -16.16  3.00e+00  2.90e+01   5.4*sigma
   A  92  THR  CA
   A  92  THR  CB
   A  92  THR  CG2       110.50   119.15    -8.65  1.70e+00  2.59e+01   5.1*sigma
   A 138  HIS  ND1
   A 138  HIS  CG
   A 138  HIS  CD2       106.10   110.80    -4.70  1.00e+00  2.21e+01   4.7*sigma
   A 113  LYS  CA
   A 113  LYS  C
   A 114  PRO  N         116.90   123.95    -7.05  1.50e+00  2.21e+01   4.7*sigma
   A 134  HIS  ND1
   A 134  HIS  CG
   A 134  HIS  CD2       106.10   110.50    -4.40  1.00e+00  1.94e+01   4.4*sigma
   A   2  LEU  CD1
   A   2  LEU  CG
   A   2  LEU  CD2       110.80   101.13     9.67  2.20e+00  1.93e+01   4.4*sigma
   A 117  PRO  C
   A 118  ASP  N
   A 118  ASP  CA        121.70   129.51    -7.81  1.80e+00  1.88e+01   4.3*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.37    -4.27  1.00e+00  1.82e+01   4.3*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   110.33    -4.23  1.00e+00  1.79e+01   4.2*sigma
   A   2  LEU  N
   A   2  LEU  CA
   A   2  LEU  CB        110.50   103.38     7.12  1.70e+00  1.76e+01   4.2*sigma
   A  51  ILE  CA
   A  51  ILE  C
   A  52  PRO  N         116.90   123.10    -6.20  1.50e+00  1.71e+01   4.1*sigma
   A  20  THR  CA
   A  20  THR  CB
   A  20  THR  OG1       109.60   115.80    -6.20  1.50e+00  1.71e+01   4.1*sigma
   A 138  HIS  ND1
   A 138  HIS  CE1
   A 138  HIS  NE2       108.40   112.43    -4.03  1.00e+00  1.63e+01   4.0*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.12    -4.02  1.00e+00  1.61e+01   4.0*sigma
   A 139  HIS  ND1
   A 139  HIS  CE1
   A 139  HIS  NE2       108.40   112.40    -4.00  1.00e+00  1.60e+01   4.0*sigma

  Min. delta:    0.001 (Z=  0.000)
  Max. delta:   16.164 (Z=  6.195)
  Mean delta:    2.191 (Z=  1.220)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  21  ARG  CA
   A  21  ARG  C
   A  22  PRO  N
   A  22  PRO  CA        180.00   152.66    27.34  5.00e+00  2.99e+01   5.5*sigma
   A  88  ASP  CA
   A  88  ASP  C
   A  89  TYR  N
   A  89  TYR  CA        180.00   152.77    27.23  5.00e+00  2.96e+01   5.4*sigma

  Min. delta:    0.008
  Max. delta:   62.329
  Mean delta:   10.879

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.466
  Mean delta:    0.096

                       ----------Planar groups----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.072
  Mean delta:    0.014

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

                       ----------Angle outliers----------                      

   A   2  LEU  HG , Angle CB-CG-HG, observed: 95.085, delta from target: 13.915
   A  30  ILE  HB , Angle CA-CB-HB, observed: 94.764, delta from target: 14.236
   A   2  LEU  HG , Angle CD2-CG-HG, observed: 123.552, delta from target: -15.552

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.011   0.049   2241  Z= 0.585
    Angle     :  1.998  16.164   4077  Z= 0.897
    Chirality :  0.096   0.466    176
    Planarity :  0.011   0.072    326
    Dihedral  :  9.611  62.329    768
    Min Nonbonded Distance : 1.399
  
  Molprobity Statistics.
    All-atom Clashscore : 3.61
    Ramachandran Plot:
      Outliers :  1.46 %
      Allowed  :  7.30 %
      Favored  : 91.24 %
    Rotamer:
      Outliers :  1.61 %
      Allowed  :  0.00 %
      Favored  : 98.39 %
    Cbeta Deviations :  0.76 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.00 %
      Twisted Proline : 0.00 %
      Twisted General : 0.00 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole:  0.32 (0.75), residues: 137
    helix:  1.57 (0.61), residues: 64
    sheet:  None (None), residues: 0
    loop : -1.07 (0.82), residues: 73
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.005   0.001   HIS A 138 
   PHE   0.120   0.038   PHE A  15 
   TYR   0.133   0.020   TYR A  89 
   ARG   0.022   0.006   ARG A 129 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.005   0.001   HIS A 138 
   PHE   0.069   0.026   PHE A  45 
   TYR   0.099   0.018   TYR A  89 
   ARG   0.013   0.003   ARG A  58 

                     ----------Asn/Gln/His flips----------                     

  No backwards Asn/Gln/His sidechains found.

=================================== Summary ===================================

  Ramachandran outliers =   1.46 %
                favored =  91.24 %
  Rotamer outliers      =   1.61 %
  C-beta deviations     =     1
  Clashscore            =   3.61
  RMS(bonds)            =   0.0110
  RMS(angles)           =   2.00
  MolProbity score      =   1.82

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py

End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000 (Z=  0.001)
  Max. delta:    0.049 (Z=  3.508)
  Mean delta:    0.016 (Z=  0.860)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  53  LEU  CD1
   A  53  LEU  CG
   A  53  LEU  CD2       110.80   127.67   -16.87  2.20e+00  5.88e+01   7.7*sigma
   A 124  ALA  C
   A 124  ALA  CA
   A 124  ALA  CB        110.50   101.49     9.01  1.50e+00  3.61e+01   6.0*sigma
   A  86  ILE  C
   A  86  ILE  CA
   A  86  ILE  CB        111.60   123.58   -11.98  2.00e+00  3.59e+01   6.0*sigma
   A  82  THR  N
   A  82  THR  CA
   A  82  THR  CB        111.50   120.90    -9.40  1.70e+00  3.06e+01   5.5*sigma
   A  58  ARG  NE
   A  58  ARG  CZ
   A  58  ARG  NH2       119.20   123.76    -4.56  9.00e-01  2.56e+01   5.1*sigma
   A 126  VAL  CA
   A 126  VAL  CB
   A 126  VAL  CG1       110.40   118.67    -8.27  1.70e+00  2.37e+01   4.9*sigma
   A  30  ILE  CA
   A  30  ILE  CB
   A  30  ILE  CG1       110.40   118.50    -8.10  1.70e+00  2.27e+01   4.8*sigma
   A  53  LEU  CA
   A  53  LEU  C
   A  54  PRO  N         116.90   124.05    -7.15  1.50e+00  2.27e+01   4.8*sigma
   A   2  LEU  CB
   A   2  LEU  CG
   A   2  LEU  CD1       110.70   124.53   -13.83  3.00e+00  2.12e+01   4.6*sigma
   A  78  ILE  CA
   A  78  ILE  CB
   A  78  ILE  CG1       110.40   118.13    -7.73  1.70e+00  2.07e+01   4.5*sigma
   A  43  HIS  ND1
   A  43  HIS  CG
   A  43  HIS  CD2       106.10   110.59    -4.49  1.00e+00  2.01e+01   4.5*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.58    -4.48  1.00e+00  2.01e+01   4.5*sigma
   A 113  LYS  CA
   A 113  LYS  C
   A 114  PRO  N         116.90   123.58    -6.68  1.50e+00  1.98e+01   4.5*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.53    -4.43  1.00e+00  1.96e+01   4.4*sigma
   A 134  HIS  ND1
   A 134  HIS  CG
   A 134  HIS  CD2       106.10   110.49    -4.39  1.00e+00  1.92e+01   4.4*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   110.42    -4.32  1.00e+00  1.86e+01   4.3*sigma
   A  17  SER  C
   A  17  SER  CA
   A  17  SER  CB        110.10   101.91     8.19  1.90e+00  1.86e+01   4.3*sigma
   A  21  ARG  CA
   A  21  ARG  C
   A  22  PRO  N         116.90   123.31    -6.41  1.50e+00  1.83e+01   4.3*sigma
   A 138  HIS  ND1
   A 138  HIS  CG
   A 138  HIS  CD2       106.10   110.33    -4.23  1.00e+00  1.79e+01   4.2*sigma
   A 136  HIS  ND1
   A 136  HIS  CG
   A 136  HIS  CD2       106.10   110.16    -4.06  1.00e+00  1.65e+01   4.1*sigma
   A 101  LYS  CA
   A 101  LYS  C
   A 102  PRO  N         116.90   122.94    -6.04  1.50e+00  1.62e+01   4.0*sigma
   A 139  HIS  ND1
   A 139  HIS  CE1
   A 139  HIS  NE2       108.40   112.42    -4.02  1.00e+00  1.62e+01   4.0*sigma

  Min. delta:    0.005 (Z=  0.001)
  Max. delta:   16.870 (Z=  7.668)
  Mean delta:    2.317 (Z=  1.279)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  86  ILE  CA
   A  86  ILE  C
   A  87  GLY  N
   A  87  GLY  CA        180.00   151.01    28.99  5.00e+00  3.36e+01   5.8*sigma
   A  45  PHE  CA
   A  45  PHE  C
   A  46  SER  N
   A  46  SER  CA        180.00   155.95    24.05  5.00e+00  2.31e+01   4.8*sigma
   A  43  HIS  CA
   A  43  HIS  C
   A  44  ASP  N
   A  44  ASP  CA        180.00   158.79    21.21  5.00e+00  1.80e+01   4.2*sigma

  Min. delta:    0.008
  Max. delta:   67.914
  Mean delta:   11.913

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.001
  Max. delta:    0.581
  Mean delta:    0.117

                       ----------Planar groups----------                       

  atoms                 rms_deltas   delta_max    residual   deviation
   A  91  TYR  CB
   A  91  TYR  CG
   A  91  TYR  CD1
   A  91  TYR  CD2
   A  91  TYR  CE1
   A  91  TYR  CE2
   A  91  TYR  CZ
   A  91  TYR  OH            0.081       0.139      132.53   6.9*sigma
   A  43  HIS  CB
   A  43  HIS  CG
   A  43  HIS  ND1
   A  43  HIS  CD2
   A  43  HIS  CE1
   A  43  HIS  NE2           0.058       0.089       51.04   4.4*sigma

  Min. delta:    0.000
  Max. delta:    0.081
  Mean delta:    0.014

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

                       ----------Angle outliers----------                      

   A  53  LEU  HG , Angle CD1-CG-HG, observed: 95.869, delta from target: 12.131
   A  45  PHE  HA , Angle N-CA-HA, observed: 95.144, delta from target: 14.856
   A  53  LEU  HG , Angle CB-CG-HG, observed: 124.990, delta from target: -15.990

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.011   0.049   2241  Z= 0.612
    Angle     :  2.095  16.870   4077  Z= 0.938
    Chirality :  0.117   0.581    176
    Planarity :  0.012   0.101    326
    Dihedral  : 10.780  67.914    768
    Min Nonbonded Distance : 1.734
  
  Molprobity Statistics.
    All-atom Clashscore : 7.22
    Ramachandran Plot:
      Outliers :  3.65 %
      Allowed  : 11.68 %
      Favored  : 84.67 %
    Rotamer:
      Outliers :  2.42 %
      Allowed  :  1.61 %
      Favored  : 95.97 %
    Cbeta Deviations :  2.27 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.00 %
      Twisted Proline : 0.00 %
      Twisted General : 0.00 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -0.48 (0.71), residues: 137
    helix:  1.81 (0.62), residues: 64
    sheet:  None (None), residues: 0
    loop : -2.48 (0.68), residues: 73
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.005   0.001   HIS A 139 
   PHE   0.185   0.048   PHE A  15 
   TYR   0.206   0.028   TYR A  91 
   ARG   0.021   0.007   ARG A  58 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.005   0.001   HIS A 139 
   PHE   0.060   0.030   PHE A  15 
   TYR   0.139   0.028   TYR A  91 
   ARG   0.011   0.004   ARG A  21 

                     ----------Asn/Gln/His flips----------                     

  No backwards Asn/Gln/His sidechains found.

=================================== Summary ===================================

  Ramachandran outliers =   3.65 %
                favored =  84.67 %
  Rotamer outliers      =   2.42 %
  C-beta deviations     =     3
  Clashscore            =   7.22
  RMS(bonds)            =   0.0114
  RMS(angles)           =   2.09
  MolProbity score      =   2.35

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py

============================== Collecting inputs ==============================


End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000 (Z=  0.000)
  Max. delta:    0.056 (Z=  3.685)
  Mean delta:    0.016 (Z=  0.880)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 136  HIS  C
   A 137  HIS  N
   A 137  HIS  CA        121.70   136.95   -15.25  1.80e+00  7.18e+01   8.5*sigma
   A 136  HIS  CA
   A 136  HIS  CB
   A 136  HIS  CG        113.80   120.46    -6.66  1.00e+00  4.43e+01   6.7*sigma
   A 134  HIS  C
   A 135  HIS  N
   A 135  HIS  CA        121.70   132.50   -10.80  1.80e+00  3.60e+01   6.0*sigma
   A 113  LYS  CA
   A 113  LYS  C
   A 114  PRO  N         116.90   125.88    -8.98  1.50e+00  3.59e+01   6.0*sigma
   A 135  HIS  CA
   A 135  HIS  CB
   A 135  HIS  CG        113.80   119.58    -5.78  1.00e+00  3.34e+01   5.8*sigma
   A  57  VAL  CA
   A  57  VAL  CB
   A  57  VAL  CG2       110.40   100.70     9.70  1.70e+00  3.26e+01   5.7*sigma
   A 134  HIS  CA
   A 134  HIS  CB
   A 134  HIS  CG        113.80   119.27    -5.47  1.00e+00  2.99e+01   5.5*sigma
   A 134  HIS  O
   A 134  HIS  C
   A 135  HIS  N         123.00   114.46     8.54  1.60e+00  2.85e+01   5.3*sigma
   A 136  HIS  N
   A 136  HIS  CA
   A 136  HIS  CB        110.50   119.41    -8.91  1.70e+00  2.75e+01   5.2*sigma
   A  29  ASP  CA
   A  29  ASP  CB
   A  29  ASP  CG        112.60   117.81    -5.21  1.00e+00  2.71e+01   5.2*sigma
   A 134  HIS  CA
   A 134  HIS  C
   A 135  HIS  N         116.20   126.25   -10.05  2.00e+00  2.53e+01   5.0*sigma
   A  57  VAL  CG1
   A  57  VAL  CB
   A  57  VAL  CG2       110.80   121.75   -10.95  2.20e+00  2.48e+01   5.0*sigma
   A 130  SER  C
   A 131  ILE  N
   A 131  ILE  CA        121.70   130.59    -8.89  1.80e+00  2.44e+01   4.9*sigma
   A 113  LYS  O
   A 113  LYS  C
   A 114  PRO  N         123.00   115.32     7.68  1.60e+00  2.31e+01   4.8*sigma
   A 137  HIS  N
   A 137  HIS  CA
   A 137  HIS  CB        110.50   118.38    -7.88  1.70e+00  2.15e+01   4.6*sigma
   A 138  HIS  ND1
   A 138  HIS  CG
   A 138  HIS  CD2       106.10   110.69    -4.59  1.00e+00  2.11e+01   4.6*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.69    -4.59  1.00e+00  2.11e+01   4.6*sigma
   A 130  SER  O
   A 130  SER  C
   A 131  ILE  N         123.00   115.74     7.26  1.60e+00  2.06e+01   4.5*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.63    -4.53  1.00e+00  2.05e+01   4.5*sigma
   A 135  HIS  N
   A 135  HIS  CA
   A 135  HIS  CB        110.50   118.15    -7.65  1.70e+00  2.03e+01   4.5*sigma
   A 137  HIS  CA
   A 137  HIS  CB
   A 137  HIS  CG        113.80   118.27    -4.47  1.00e+00  2.00e+01   4.5*sigma
   A  90  SER  CA
   A  90  SER  CB
   A  90  SER  OG        111.10   119.83    -8.73  2.00e+00  1.91e+01   4.4*sigma
   A 128  MET  CA
   A 128  MET  CB
   A 128  MET  CG        114.10   122.78    -8.68  2.00e+00  1.88e+01   4.3*sigma
   A  43  HIS  ND1
   A  43  HIS  CG
   A  43  HIS  CD2       106.10   110.41    -4.31  1.00e+00  1.85e+01   4.3*sigma
   A  43  HIS  CB
   A  43  HIS  CG
   A  43  HIS  ND1       122.70   116.29     6.41  1.50e+00  1.83e+01   4.3*sigma
   A 111  TYR  CA
   A 111  TYR  CB
   A 111  TYR  CG        113.90   106.28     7.62  1.80e+00  1.79e+01   4.2*sigma
   A  21  ARG  CA
   A  21  ARG  C
   A  22  PRO  N         116.90   123.14    -6.24  1.50e+00  1.73e+01   4.2*sigma
   A 136  HIS  CB
   A 136  HIS  CG
   A 136  HIS  ND1       122.70   116.55     6.15  1.50e+00  1.68e+01   4.1*sigma
   A 137  HIS  C
   A 137  HIS  CA
   A 137  HIS  CB        110.10   102.31     7.79  1.90e+00  1.68e+01   4.1*sigma
   A 139  HIS  ND1
   A 139  HIS  CE1
   A 139  HIS  NE2       108.40   112.48    -4.08  1.00e+00  1.66e+01   4.1*sigma
   A 135  HIS  CB
   A 135  HIS  CG
   A 135  HIS  CD2       131.20   125.99     5.21  1.30e+00  1.61e+01   4.0*sigma

  Min. delta:    0.001 (Z=  0.001)
  Max. delta:   15.248 (Z=  8.471)
  Mean delta:    2.417 (Z=  1.377)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 130  SER  CA
   A 130  SER  C
   A 131  ILE  N
   A 131  ILE  CA        180.00    63.78   116.22  5.00e+00  5.40e+02  23.2*sigma
   A 134  HIS  CA
   A 134  HIS  C
   A 135  HIS  N
   A 135  HIS  CA          0.00    35.11   -35.11  5.00e+00  4.93e+01   7.0*sigma
   A 137  HIS  CA
   A 137  HIS  C
   A 138  HIS  N
   A 138  HIS  CA        180.00   154.03    25.97  5.00e+00  2.70e+01   5.2*sigma
   A 133  GLU  CA
   A 133  GLU  C
   A 134  HIS  N
   A 134  HIS  CA        180.00   155.12    24.88  5.00e+00  2.48e+01   5.0*sigma
   A 138  HIS  CA
   A 138  HIS  C
   A 139  HIS  N
   A 139  HIS  CA        180.00   159.55    20.45  5.00e+00  1.67e+01   4.1*sigma

  Min. delta:    0.023
  Max. delta:  116.221
  Mean delta:   12.003

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.558
  Mean delta:    0.103

                       ----------Planar groups----------                       

  atoms                 rms_deltas   delta_max    residual   deviation
   A  45  PHE  CB
   A  45  PHE  CG
   A  45  PHE  CD1
   A  45  PHE  CD2
   A  45  PHE  CE1
   A  45  PHE  CE2
   A  45  PHE  CZ            0.160       0.253      445.68  12.7*sigma
   A 137  HIS  CB
   A 137  HIS  CG
   A 137  HIS  ND1
   A 137  HIS  CD2
   A 137  HIS  CE1
   A 137  HIS  NE2           0.075       0.101       83.69   5.0*sigma
   A 111  TYR  CB
   A 111  TYR  CG
   A 111  TYR  CD1
   A 111  TYR  CD2
   A 111  TYR  CE1
   A 111  TYR  CE2
   A 111  TYR  CZ
   A 111  TYR  OH            0.099       0.092      197.39   4.6*sigma
   A 135  HIS  CB
   A 135  HIS  CG
   A 135  HIS  ND1
   A 135  HIS  CD2
   A 135  HIS  CE1
   A 135  HIS  NE2           0.066       0.089       65.85   4.4*sigma
   A  91  TYR  CB
   A  91  TYR  CG
   A  91  TYR  CD1
   A  91  TYR  CD2
   A  91  TYR  CE1
   A  91  TYR  CE2
   A  91  TYR  CZ
   A  91  TYR  OH            0.045       0.084       39.61   4.2*sigma

  Min. delta:    0.000
  Max. delta:    0.160
  Mean delta:    0.020

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

                       ----------Angle outliers----------                      

   A  57  VAL  HB , Angle CA-CB-HB, observed: 121.868, delta from target: -12.868

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.012   0.056   2241  Z= 0.627
    Angle     :  2.110  15.248   4077  Z= 0.983
    Chirality :  0.103   0.558    176
    Planarity :  0.018   0.239    326
    Dihedral  : 10.509 116.221    768
    Min Nonbonded Distance : 1.737
  
  Molprobity Statistics.
    All-atom Clashscore : 4.51
    Ramachandran Plot:
      Outliers :  5.84 %
      Allowed  :  5.84 %
      Favored  : 88.32 %
    Rotamer:
      Outliers :  0.81 %
      Allowed  :  1.61 %
      Favored  : 97.58 %
    Cbeta Deviations :  2.27 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 1.53 %
      Twisted Proline : 0.00 %
      Twisted General : 1.53 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole:  0.37 (0.76), residues: 137
    helix:  1.49 (0.61), residues: 71
    sheet:  1.33 (1.77), residues: 10
    loop : -1.68 (0.93), residues: 56
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.008   0.003   HIS A  43 
   PHE   0.505   0.068   PHE A  45 
   TYR   0.225   0.028   TYR A 111 
   ARG   0.027   0.005   ARG A  58 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.008   0.003   HIS A  43 
   PHE   0.253   0.055   PHE A  45 
   TYR   0.180   0.027   TYR A 111 
   ARG   0.011   0.002   ARG A  58 

                     ----------Asn/Gln/His flips----------                     

   A 100  GLN
   A 137  HIS

=================================== Summary ===================================


End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  atoms                 ideal   model   delta   sigma   slack  residual   deviation
   A  97  SER  CA
   A  97  SER  C           1.52     1.41     0.12  2.10e-02  3.09e+01   5.6*sigma
   A 113  LYS  CA
   A 113  LYS  C           1.52     1.63    -0.11  2.10e-02  2.66e+01   5.2*sigma

  Min. delta:    0.000 (Z=  0.000)
  Max. delta:    0.117 (Z=  5.562)
  Mean delta:    0.017 (Z=  0.915)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  97  SER  CA
   A  97  SER  CB
   A  97  SER  OG        111.10   132.30   -21.20  2.00e+00  1.12e+02  10.6*sigma
   A  97  SER  C
   A  97  SER  CA
   A  97  SER  CB        110.10    94.18    15.92  1.90e+00  7.02e+01   8.4*sigma
   A 114  PRO  N
   A 114  PRO  CA
   A 114  PRO  C         112.10   128.26   -16.16  2.50e+00  4.18e+01   6.5*sigma
   A  15  PHE  CA
   A  15  PHE  CB
   A  15  PHE  CG        113.80   108.05     5.75  1.00e+00  3.31e+01   5.8*sigma
   A  15  PHE  C
   A  15  PHE  CA
   A  15  PHE  CB        110.10    99.72    10.38  1.90e+00  2.99e+01   5.5*sigma
   A  66  GLN  CA
   A  66  GLN  CB
   A  66  GLN  CG        114.10   124.54   -10.44  2.00e+00  2.72e+01   5.2*sigma
   A  61  LEU  CD1
   A  61  LEU  CG
   A  61  LEU  CD2       110.80    99.49    11.31  2.20e+00  2.64e+01   5.1*sigma
   A 114  PRO  CA
   A 114  PRO  C
   A 115  ALA  N         116.20   126.42   -10.22  2.00e+00  2.61e+01   5.1*sigma
   A   4  ILE  CA
   A   4  ILE  CB
   A   4  ILE  CG1       110.40   119.05    -8.65  1.70e+00  2.59e+01   5.1*sigma
   A 138  HIS  CA
   A 138  HIS  CB
   A 138  HIS  CG        113.80   118.85    -5.05  1.00e+00  2.56e+01   5.1*sigma
   A 112  VAL  CA
   A 112  VAL  CB
   A 112  VAL  CG1       110.40   118.75    -8.35  1.70e+00  2.41e+01   4.9*sigma
   A  93  LEU  C
   A  94  GLY  N
   A  94  GLY  CA        121.70   130.08    -8.38  1.80e+00  2.16e+01   4.7*sigma
   A  46  SER  CA
   A  46  SER  CB
   A  46  SER  OG        111.10   120.40    -9.30  2.00e+00  2.16e+01   4.6*sigma
   A  97  SER  N
   A  97  SER  CA
   A  97  SER  CB        110.50   118.32    -7.82  1.70e+00  2.12e+01   4.6*sigma
   A  52  PRO  N
   A  52  PRO  CD
   A  52  PRO  CG        103.20   110.08    -6.88  1.50e+00  2.10e+01   4.6*sigma
   A  97  SER  CA
   A  97  SER  C
   A  98  SER  N         116.20   107.24     8.96  2.00e+00  2.01e+01   4.5*sigma
   A 134  HIS  ND1
   A 134  HIS  CG
   A 134  HIS  CD2       106.10   110.57    -4.47  1.00e+00  1.99e+01   4.5*sigma
   A  51  ILE  CA
   A  51  ILE  C
   A  52  PRO  N         116.90   123.58    -6.68  1.50e+00  1.98e+01   4.5*sigma
   A 101  LYS  CA
   A 101  LYS  C
   A 102  PRO  N         116.90   123.44    -6.54  1.50e+00  1.90e+01   4.4*sigma
   A  29  ASP  CA
   A  29  ASP  CB
   A  29  ASP  CG        112.60   116.92    -4.32  1.00e+00  1.87e+01   4.3*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.41    -4.31  1.00e+00  1.85e+01   4.3*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   110.37    -4.27  1.00e+00  1.82e+01   4.3*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.15    -4.05  1.00e+00  1.64e+01   4.1*sigma
   A  53  LEU  CA
   A  53  LEU  C
   A  54  PRO  N         116.90   122.96    -6.06  1.50e+00  1.63e+01   4.0*sigma

  Min. delta:    0.000 (Z=  0.000)
  Max. delta:   21.198 (Z= 10.599)
  Mean delta:    2.546 (Z=  1.366)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 138  HIS  CA
   A 138  HIS  C
   A 139  HIS  N
   A 139  HIS  CA        180.00   133.64    46.36  5.00e+00  8.60e+01   9.3*sigma
   A 117  PRO  CA
   A 117  PRO  C
   A 118  ASP  N
   A 118  ASP  CA        180.00   143.24    36.76  5.00e+00  5.41e+01   7.4*sigma
   A 113  LYS  CA
   A 113  LYS  C
   A 114  PRO  N
   A 114  PRO  CA        180.00  -144.75   -35.25  5.00e+00  4.97e+01   7.0*sigma
   A 118  ASP  CA
   A 118  ASP  C
   A 119  LEU  N
   A 119  LEU  CA        180.00   151.14    28.86  5.00e+00  3.33e+01   5.8*sigma
   A 128  MET  CA
   A 128  MET  C
   A 129  ARG  N
   A 129  ARG  CA        180.00   155.84    24.16  5.00e+00  2.33e+01   4.8*sigma
   A 135  HIS  CA
   A 135  HIS  C
   A 136  HIS  N
   A 136  HIS  CA        180.00   157.99    22.01  5.00e+00  1.94e+01   4.4*sigma
   A 126  VAL  CA
   A 126  VAL  C
   A 127  ARG  N
   A 127  ARG  CA        180.00   158.62    21.38  5.00e+00  1.83e+01   4.3*sigma
   A 119  LEU  CA
   A 119  LEU  C
   A 120  GLU  N
   A 120  GLU  CA        180.00   159.85    20.15  5.00e+00  1.62e+01   4.0*sigma

  Min. delta:    0.040
  Max. delta:   60.560
  Mean delta:   10.358

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.487
  Mean delta:    0.119

                       ----------Planar groups----------                       

  atoms                 rms_deltas   delta_max    residual   deviation
   A  15  PHE  CB
   A  15  PHE  CG
   A  15  PHE  CD1
   A  15  PHE  CD2
   A  15  PHE  CE1
   A  15  PHE  CE2
   A  15  PHE  CZ            0.119       0.150      248.28   7.5*sigma
   A 113  LYS  C
   A 114  PRO  N
   A 114  PRO  CA
   A 114  PRO  CD            0.167       0.290       44.86   5.8*sigma

  Min. delta:    0.000
  Max. delta:    0.167
  Mean delta:    0.019

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

                       ----------Angle outliers----------                      

   A 114  PRO  HA , Angle C-CA-HA, observed: 94.967, delta from target: 14.033
   A  97  SER  HA , Angle N-CA-HA, observed: 94.865, delta from target: 15.135
   A 114  PRO  HA , Angle CB-CA-HA, observed: 124.290, delta from target: -15.290

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.012   0.117   2241  Z= 0.651
    Angle     :  2.212  21.198   4077  Z= 0.988
    Chirality :  0.119   0.487    176
    Planarity :  0.016   0.167    326
    Dihedral  :  9.285  60.560    768
    Min Nonbonded Distance : 1.548
  
  Molprobity Statistics.
    All-atom Clashscore : 9.47
    Ramachandran Plot:
      Outliers :  2.19 %
      Allowed  :  9.49 %
      Favored  : 88.32 %
    Rotamer:
      Outliers :  0.81 %
      Allowed  :  2.42 %
      Favored  : 96.77 %
    Cbeta Deviations :  2.27 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.00 %
      Twisted Proline : 14.29 %
      Twisted General : 1.53 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -0.66 (0.68), residues: 137
    helix:  1.47 (0.59), residues: 65
    sheet:  None (None), residues: 0
    loop : -2.42 (0.67), residues: 72
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.008   0.002   HIS A 138 
   PHE   0.291   0.051   PHE A  15 
   TYR   0.126   0.021   TYR A  12 
   ARG   0.035   0.008   ARG A 127 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.008   0.002   HIS A 138 
   PHE   0.187   0.049   PHE A  15 
   TYR   0.099   0.019   TYR A  50 
   ARG   0.017   0.003   ARG A 127 

                     ----------Asn/Gln/His flips----------                     

  No backwards Asn/Gln/His sidechains found.

=================================== Summary ===================================

  Ramachandran outliers =   5.84 %
                favored =  88.32 %
  Rotamer outliers      =   0.81 %
  C-beta deviations     =     3
  Clashscore            =   4.51
  RMS(bonds)            =   0.0116
  RMS(angles)           =   2.11
  MolProbity score      =   1.82

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py
  Ramachandran outliers =   2.19 %
                favored =  88.32 %
  Rotamer outliers      =   0.81 %
  C-beta deviations     =     3
  Clashscore            =   9.47
  RMS(bonds)            =   0.0123
  RMS(angles)           =   2.21
  MolProbity score      =   2.09

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py

End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000 (Z=  0.001)
  Max. delta:    0.058 (Z=  3.894)
  Mean delta:    0.016 (Z=  0.860)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  82  THR  CA
   A  82  THR  CB
   A  82  THR  OG1       109.60   120.49   -10.89  1.50e+00  5.27e+01   7.3*sigma
   A  53  LEU  CA
   A  53  LEU  C
   A  54  PRO  N         116.90   127.09   -10.19  1.50e+00  4.61e+01   6.8*sigma
   A  44  ASP  CA
   A  44  ASP  CB
   A  44  ASP  CG        112.60   119.01    -6.41  1.00e+00  4.11e+01   6.4*sigma
   A 116  ASP  CA
   A 116  ASP  CB
   A 116  ASP  CG        112.60   118.68    -6.08  1.00e+00  3.70e+01   6.1*sigma
   A 113  LYS  CA
   A 113  LYS  C
   A 114  PRO  N         116.90   125.54    -8.64  1.50e+00  3.32e+01   5.8*sigma
   A   5  THR  CA
   A   5  THR  C
   A   6  PRO  N         116.90   125.21    -8.31  1.50e+00  3.07e+01   5.5*sigma
   A  76  SER  N
   A  76  SER  CA
   A  76  SER  CB        110.50   119.64    -9.14  1.70e+00  2.89e+01   5.4*sigma
   A  52  PRO  C
   A  52  PRO  CA
   A  52  PRO  CB        110.10   120.23   -10.13  1.90e+00  2.84e+01   5.3*sigma
   A 116  ASP  CA
   A 116  ASP  C
   A 117  PRO  N         116.90   124.46    -7.56  1.50e+00  2.54e+01   5.0*sigma
   A 116  ASP  N
   A 116  ASP  CA
   A 116  ASP  CB        110.50   102.52     7.98  1.70e+00  2.20e+01   4.7*sigma
   A 138  HIS  ND1
   A 138  HIS  CG
   A 138  HIS  CD2       106.10   110.69    -4.59  1.00e+00  2.11e+01   4.6*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.67    -4.57  1.00e+00  2.08e+01   4.6*sigma
   A  48  ALA  N
   A  48  ALA  CA
   A  48  ALA  CB        110.40   117.15    -6.75  1.50e+00  2.03e+01   4.5*sigma
   A 117  PRO  CA
   A 117  PRO  C
   A 118  ASP  N         116.20   125.16    -8.96  2.00e+00  2.01e+01   4.5*sigma
   A  81  TYR  N
   A  81  TYR  CA
   A  81  TYR  CB        110.50   118.07    -7.57  1.70e+00  1.98e+01   4.5*sigma
   A 134  HIS  ND1
   A 134  HIS  CG
   A 134  HIS  CD2       106.10   110.50    -4.40  1.00e+00  1.94e+01   4.4*sigma
   A 136  HIS  ND1
   A 136  HIS  CG
   A 136  HIS  CD2       106.10   110.48    -4.38  1.00e+00  1.92e+01   4.4*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   110.27    -4.17  1.00e+00  1.74e+01   4.2*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.26    -4.16  1.00e+00  1.73e+01   4.2*sigma
   A  43  HIS  ND1
   A  43  HIS  CG
   A  43  HIS  CD2       106.10   110.24    -4.14  1.00e+00  1.71e+01   4.1*sigma
   A 115  ALA  C
   A 115  ALA  CA
   A 115  ALA  CB        110.50   116.67    -6.17  1.50e+00  1.69e+01   4.1*sigma
   A 115  ALA  N
   A 115  ALA  CA
   A 115  ALA  CB        110.40   104.37     6.03  1.50e+00  1.61e+01   4.0*sigma

  Min. delta:    0.001 (Z=  0.000)
  Max. delta:   10.893 (Z=  7.262)
  Mean delta:    2.348 (Z=  1.314)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  53  LEU  CA
   A  53  LEU  C
   A  54  PRO  N
   A  54  PRO  CA        180.00   150.49    29.51  5.00e+00  3.48e+01   5.9*sigma
   A 113  LYS  CA
   A 113  LYS  C
   A 114  PRO  N
   A 114  PRO  CA        180.00   150.70    29.30  5.00e+00  3.43e+01   5.9*sigma
   A 116  ASP  CA
   A 116  ASP  C
   A 117  PRO  N
   A 117  PRO  CA        180.00   151.20    28.80  5.00e+00  3.32e+01   5.8*sigma
   A  21  ARG  CA
   A  21  ARG  C
   A  22  PRO  N
   A  22  PRO  CA        180.00   159.47    20.53  5.00e+00  1.69e+01   4.1*sigma

  Min. delta:    0.052
  Max. delta:   65.362
  Mean delta:   10.892

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.001
  Max. delta:    0.495
  Mean delta:    0.118

                       ----------Planar groups----------                       

  atoms                 rms_deltas   delta_max    residual   deviation
   A 116  ASP  C
   A 117  PRO  N
   A 117  PRO  CA
   A 117  PRO  CD            0.134       0.232       28.73   4.6*sigma
   A  68  TYR  CB
   A  68  TYR  CG
   A  68  TYR  CD1
   A  68  TYR  CD2
   A  68  TYR  CE1
   A  68  TYR  CE2
   A  68  TYR  CZ
   A  68  TYR  OH            0.044       0.083       39.02   4.2*sigma

  Min. delta:    0.000
  Max. delta:    0.134
  Mean delta:    0.017

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

                       ----------Angle outliers----------                      

   A 115  ALA  HA , Angle C-CA-HA, observed: 96.962, delta from target: 12.038
   A  76  SER  HA , Angle N-CA-HA, observed: 97.486, delta from target: 12.514
   A 118  ASP  HA , Angle N-CA-HA, observed: 97.068, delta from target: 12.932
   A 117  PRO  HA , Angle CB-CA-HA, observed: 122.089, delta from target: -13.089
   A  82  THR  HB , Angle CG2-CB-HB, observed: 121.354, delta from target: -13.354

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.012   0.058   2241  Z= 0.612
    Angle     :  2.092  13.354   4077  Z= 0.952
    Chirality :  0.118   0.495    176
    Planarity :  0.013   0.134    326
    Dihedral  :  9.921  80.033    768
    Min Nonbonded Distance : 1.687
  
  Molprobity Statistics.
    All-atom Clashscore : 2.71
    Ramachandran Plot:
      Outliers :  5.84 %
      Allowed  : 14.60 %
      Favored  : 79.56 %
    Rotamer:
      Outliers :  0.00 %
      Allowed  :  0.81 %
      Favored  : 99.19 %
    Cbeta Deviations :  3.79 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.00 %
      Twisted Proline : 0.00 %
      Twisted General : 0.00 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -1.81 (0.66), residues: 137
    helix:  1.20 (0.59), residues: 56
    sheet:  None (None), residues: 0
    loop : -3.23 (0.60), residues: 81
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.005   0.001   HIS A 139 
   PHE   0.112   0.025   PHE A  67 
   TYR   0.116   0.016   TYR A  68 
   ARG   0.072   0.014   ARG A  21 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.005   0.001   HIS A 139 
   PHE   0.076   0.025   PHE A  67 
   TYR   0.083   0.015   TYR A  68 
   ARG   0.013   0.003   ARG A  58 

                     ----------Asn/Gln/His flips----------                     

  No backwards Asn/Gln/His sidechains found.

=================================== Summary ===================================


============================== Collecting inputs ==============================

  Ramachandran outliers =   5.84 %
                favored =  79.56 %
  Rotamer outliers      =   0.00 %
  C-beta deviations     =     5
  Clashscore            =   2.71
  RMS(bonds)            =   0.0115
  RMS(angles)           =   2.09
  MolProbity score      =   1.80

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py
Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  


============================== Collecting inputs ==============================


End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  atoms                 ideal   model   delta   sigma   slack  residual   deviation
   A  30  ILE  C
   A  31  LEU  N           1.33     1.39    -0.06  1.40e-02  1.69e+01   4.1*sigma
   A  43  HIS  CE1
   A  43  HIS  NE2         1.32     1.36    -0.04  1.00e-02  1.62e+01   4.0*sigma

  Min. delta:    0.000 (Z=  0.000)
  Max. delta:    0.074 (Z=  4.112)
  Mean delta:    0.017 (Z=  0.937)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  30  ILE  CA
   A  30  ILE  CB
   A  30  ILE  CG1       110.40   125.48   -15.08  1.70e+00  7.86e+01   8.9*sigma
   A 113  LYS  CA
   A 113  LYS  C
   A 114  PRO  N         116.90   126.93   -10.03  1.50e+00  4.47e+01   6.7*sigma
   A  57  VAL  CA
   A  57  VAL  CB
   A  57  VAL  CG2       110.40   119.86    -9.46  1.70e+00  3.10e+01   5.6*sigma
   A 114  PRO  N
   A 114  PRO  CA
   A 114  PRO  C         112.10   125.87   -13.77  2.50e+00  3.03e+01   5.5*sigma
   A  61  LEU  CD1
   A  61  LEU  CG
   A  61  LEU  CD2       110.80    99.20    11.60  2.20e+00  2.78e+01   5.3*sigma
   A 116  ASP  CA
   A 116  ASP  C
   A 117  PRO  N         116.90   124.39    -7.49  1.50e+00  2.49e+01   5.0*sigma
   A 139  HIS  N
   A 139  HIS  CA
   A 139  HIS  CB        110.50   118.55    -8.05  1.70e+00  2.24e+01   4.7*sigma
   A 114  PRO  O
   A 114  PRO  C
   A 115  ALA  N         123.00   115.74     7.26  1.60e+00  2.06e+01   4.5*sigma
   A  51  ILE  CA
   A  51  ILE  C
   A  52  PRO  N         116.90   123.66    -6.76  1.50e+00  2.03e+01   4.5*sigma
   A   2  LEU  CB
   A   2  LEU  CG
   A   2  LEU  CD1       110.70   124.07   -13.37  3.00e+00  1.99e+01   4.5*sigma
   A  21  ARG  CA
   A  21  ARG  C
   A  22  PRO  N         116.90   123.49    -6.59  1.50e+00  1.93e+01   4.4*sigma
   A  43  HIS  ND1
   A  43  HIS  CG
   A  43  HIS  CD2       106.10   110.49    -4.39  1.00e+00  1.93e+01   4.4*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.37    -4.27  1.00e+00  1.82e+01   4.3*sigma
   A 138  HIS  CA
   A 138  HIS  CB
   A 138  HIS  CG        113.80   118.05    -4.25  1.00e+00  1.81e+01   4.3*sigma
   A  45  PHE  CA
   A  45  PHE  CB
   A  45  PHE  CG        113.80   109.61     4.19  1.00e+00  1.75e+01   4.2*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   110.24    -4.14  1.00e+00  1.71e+01   4.1*sigma
   A 136  HIS  CA
   A 136  HIS  CB
   A 136  HIS  CG        113.80   117.91    -4.11  1.00e+00  1.69e+01   4.1*sigma
   A  83  THR  N
   A  83  THR  CA
   A  83  THR  CB        111.50   118.40    -6.90  1.70e+00  1.65e+01   4.1*sigma
   A 139  HIS  ND1
   A 139  HIS  CE1
   A 139  HIS  NE2       108.40   112.46    -4.06  1.00e+00  1.65e+01   4.1*sigma
   A 137  HIS  ND1
   A 137  HIS  CE1
   A 137  HIS  NE2       108.40   112.42    -4.02  1.00e+00  1.61e+01   4.0*sigma
   A   4  ILE  N
   A   4  ILE  CA
   A   4  ILE  CB        111.50   118.30    -6.80  1.70e+00  1.60e+01   4.0*sigma

  Min. delta:    0.000 (Z=  0.000)
  Max. delta:   15.076 (Z=  8.868)
  Mean delta:    2.417 (Z=  1.324)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 138  HIS  CA
   A 138  HIS  C
   A 139  HIS  N
   A 139  HIS  CA        180.00   136.31    43.69  5.00e+00  7.64e+01   8.7*sigma
   A 128  MET  CA
   A 128  MET  C
   A 129  ARG  N
   A 129  ARG  CA        180.00   149.66    30.34  5.00e+00  3.68e+01   6.1*sigma
   A 136  HIS  CA
   A 136  HIS  C
   A 137  HIS  N
   A 137  HIS  CA        180.00   150.53    29.47  5.00e+00  3.47e+01   5.9*sigma
   A 127  ARG  CA
   A 127  ARG  C
   A 128  MET  N
   A 128  MET  CA        180.00   152.82    27.18  5.00e+00  2.95e+01   5.4*sigma
   A  94  GLY  CA
   A  94  GLY  C
   A  95  ASP  N
   A  95  ASP  CA        180.00   154.74    25.26  5.00e+00  2.55e+01   5.1*sigma
   A 134  HIS  CA
   A 134  HIS  C
   A 135  HIS  N
   A 135  HIS  CA        180.00   154.85    25.15  5.00e+00  2.53e+01   5.0*sigma
   A  21  ARG  CA
   A  21  ARG  C
   A  22  PRO  N
   A  22  PRO  CA        180.00   158.09    21.91  5.00e+00  1.92e+01   4.4*sigma
   A  78  ILE  CA
   A  78  ILE  C
   A  79  LYS  N
   A  79  LYS  CA        180.00   158.16    21.84  5.00e+00  1.91e+01   4.4*sigma
   A 135  HIS  CA
   A 135  HIS  C
   A 136  HIS  N
   A 136  HIS  CA        180.00   159.85    20.15  5.00e+00  1.62e+01   4.0*sigma

  Min. delta:    0.013
  Max. delta:   51.111
  Mean delta:   10.573

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.001
  Max. delta:    0.662
  Mean delta:    0.118

                       ----------Planar groups----------                       

  atoms                 rms_deltas   delta_max    residual   deviation
   A  50  TYR  CB
   A  50  TYR  CG
   A  50  TYR  CD1
   A  50  TYR  CD2
   A  50  TYR  CE1
   A  50  TYR  CE2
   A  50  TYR  CZ
   A  50  TYR  OH            0.057       0.104       65.16   5.2*sigma
   A  68  TYR  CB
   A  68  TYR  CG
   A  68  TYR  CD1
   A  68  TYR  CD2
   A  68  TYR  CE1
   A  68  TYR  CE2
   A  68  TYR  CZ
   A  68  TYR  OH            0.074       0.104      109.22   5.2*sigma

  Min. delta:    0.000
  Max. delta:    0.074
  Mean delta:    0.015

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

                       ----------Angle outliers----------                      

   A  30  ILE  HB , Angle CG2-CB-HB, observed: 122.380, delta from target: -13.380
   A   2  LEU  HG , Angle CB-CG-HG, observed: 94.089, delta from target: 14.911
   A 114  PRO  HA , Angle C-CA-HA, observed: 90.896, delta from target: 18.104

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.012   0.074   2241  Z= 0.667
    Angle     :  2.190  18.104   4077  Z= 0.974
    Chirality :  0.118   0.662    176
    Planarity :  0.013   0.100    326
    Dihedral  : 10.253  89.899    768
    Min Nonbonded Distance : 1.837
  
  Molprobity Statistics.
    All-atom Clashscore : 3.61
    Ramachandran Plot:
      Outliers :  4.38 %
      Allowed  : 11.68 %
      Favored  : 83.94 %
    Rotamer:
      Outliers :  0.00 %
      Allowed  :  3.23 %
      Favored  : 96.77 %
    Cbeta Deviations :  1.52 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.00 %
      Twisted Proline : 0.00 %
      Twisted General : 1.53 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -0.16 (0.74), residues: 137
    helix:  1.33 (0.57), residues: 64
    sheet:  None (None), residues: 0
    loop : -1.50 (0.83), residues: 73
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.008   0.002   HIS A 138 
   PHE   0.173   0.034   PHE A  15 
   TYR   0.202   0.031   TYR A  68 
   ARG   0.023   0.007   ARG A 127 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.008   0.002   HIS A 138 
   PHE   0.083   0.025   PHE A  15 
   TYR   0.114   0.027   TYR A  68 
   ARG   0.012   0.003   ARG A 127 

                     ----------Asn/Gln/His flips----------                     

   A  28  GLN

=================================== Summary ===================================

  Ramachandran outliers =   4.38 %
                favored =  83.94 %
  Rotamer outliers      =   0.00 %
  C-beta deviations     =     2
  Clashscore            =   3.61
  RMS(bonds)            =   0.0124
  RMS(angles)           =   2.19
  MolProbity score      =   1.83

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py
Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  


============================== Collecting inputs ==============================


End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000 (Z=  0.000)
  Max. delta:    0.054 (Z=  3.399)
  Mean delta:    0.016 (Z=  0.827)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  51  ILE  CA
   A  51  ILE  C
   A  52  PRO  N         116.90   128.61   -11.71  1.50e+00  6.10e+01   7.8*sigma
   A  52  PRO  N
   A  52  PRO  CD
   A  52  PRO  CG        103.20   111.77    -8.57  1.50e+00  3.27e+01   5.7*sigma
   A  51  ILE  O
   A  51  ILE  C
   A  52  PRO  N         123.00   114.00     9.00  1.60e+00  3.16e+01   5.6*sigma
   A  86  ILE  C
   A  87  GLY  N
   A  87  GLY  CA        121.70   131.40    -9.70  1.80e+00  2.90e+01   5.4*sigma
   A  44  ASP  CA
   A  44  ASP  CB
   A  44  ASP  CG        112.60   107.95     4.65  1.00e+00  2.16e+01   4.6*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   110.49    -4.39  1.00e+00  1.93e+01   4.4*sigma
   A 138  HIS  ND1
   A 138  HIS  CG
   A 138  HIS  CD2       106.10   110.42    -4.32  1.00e+00  1.87e+01   4.3*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.39    -4.29  1.00e+00  1.84e+01   4.3*sigma
   A 113  LYS  CA
   A 113  LYS  C
   A 114  PRO  N         116.90   123.25    -6.35  1.50e+00  1.79e+01   4.2*sigma
   A 115  ALA  C
   A 115  ALA  CA
   A 115  ALA  CB        110.50   104.23     6.27  1.50e+00  1.75e+01   4.2*sigma
   A  43  HIS  ND1
   A  43  HIS  CG
   A  43  HIS  CD2       106.10   110.27    -4.17  1.00e+00  1.74e+01   4.2*sigma
   A  86  ILE  CA
   A  86  ILE  CB
   A  86  ILE  CG2       110.50   117.36    -6.86  1.70e+00  1.63e+01   4.0*sigma

  Min. delta:    0.004 (Z=  0.002)
  Max. delta:   11.712 (Z=  7.808)
  Mean delta:    2.172 (Z=  1.221)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 128  MET  CA
   A 128  MET  C
   A 129  ARG  N
   A 129  ARG  CA        180.00   141.57    38.43  5.00e+00  5.91e+01   7.7*sigma
   A 130  SER  CA
   A 130  SER  C
   A 131  ILE  N
   A 131  ILE  CA        180.00   142.87    37.13  5.00e+00  5.51e+01   7.4*sigma
   A 138  HIS  CA
   A 138  HIS  C
   A 139  HIS  N
   A 139  HIS  CA        180.00   143.35    36.65  5.00e+00  5.37e+01   7.3*sigma
   A 136  HIS  CA
   A 136  HIS  C
   A 137  HIS  N
   A 137  HIS  CA        180.00   146.25    33.75  5.00e+00  4.56e+01   6.7*sigma
   A 116  ASP  CA
   A 116  ASP  C
   A 117  PRO  N
   A 117  PRO  CA        180.00   147.90    32.10  5.00e+00  4.12e+01   6.4*sigma
   A 132  LEU  CA
   A 132  LEU  C
   A 133  GLU  N
   A 133  GLU  CA        180.00   158.64    21.36  5.00e+00  1.83e+01   4.3*sigma
   A 129  ARG  CA
   A 129  ARG  C
   A 130  SER  N
   A 130  SER  CA        180.00   159.81    20.19  5.00e+00  1.63e+01   4.0*sigma

  Min. delta:    0.024
  Max. delta:   59.551
  Mean delta:    9.947

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.002
  Max. delta:    0.533
  Mean delta:    0.101

                       ----------Planar groups----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.039
  Mean delta:    0.011

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

                       ----------Angle outliers----------                      

   A  51  ILE  HA , Angle C-CA-HA, observed: 96.025, delta from target: 12.975

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.011   0.054   2241  Z= 0.589
    Angle     :  1.957  12.975   4077  Z= 0.889
    Chirality :  0.101   0.533    176
    Planarity :  0.009   0.055    326
    Dihedral  :  9.092  59.551    768
    Min Nonbonded Distance : 1.723
  
  Molprobity Statistics.
    All-atom Clashscore : 3.16
    Ramachandran Plot:
      Outliers :  4.38 %
      Allowed  : 10.22 %
      Favored  : 85.40 %
    Rotamer:
      Outliers :  0.00 %
      Allowed  :  0.00 %
      Favored  : 100.00 %
    Cbeta Deviations :  3.03 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.00 %
      Twisted Proline : 14.29 %
      Twisted General : 3.05 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -0.90 (0.73), residues: 137
    helix:  1.26 (0.63), residues: 63
    sheet:  0.01 (1.61), residues: 10
    loop : -2.78 (0.78), residues: 64
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.006   0.002   HIS A 136 
   PHE   0.090   0.020   PHE A  15 
   TYR   0.111   0.021   TYR A  12 
   ARG   0.028   0.007   ARG A  58 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.006   0.002   HIS A 136 
   PHE   0.035   0.010   PHE A  15 
   TYR   0.059   0.015   TYR A  12 
   ARG   0.009   0.003   ARG A  58 

                     ----------Asn/Gln/His flips----------                     

  No backwards Asn/Gln/His sidechains found.

=================================== Summary ===================================


End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  atoms                 ideal   model   delta   sigma   slack  residual   deviation
   A  43  HIS  CE1
   A  43  HIS  NE2         1.32     1.38    -0.06  1.00e-02  3.84e+01   6.2*sigma

  Min. delta:    0.000 (Z=  0.001)
  Max. delta:    0.062 (Z=  6.198)
  Mean delta:    0.016 (Z=  0.832)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  29  ASP  CA
   A  29  ASP  CB
   A  29  ASP  CG        112.60   118.91    -6.31  1.00e+00  3.98e+01   6.3*sigma
   A  51  ILE  CA
   A  51  ILE  C
   A  52  PRO  N         116.90   126.22    -9.32  1.50e+00  3.86e+01   6.2*sigma
   A  43  HIS  CD2
   A  43  HIS  NE2
   A  43  HIS  CE1       109.00   104.04     4.96  1.00e+00  2.46e+01   5.0*sigma
   A  44  ASP  CA
   A  44  ASP  CB
   A  44  ASP  CG        112.60   107.82     4.78  1.00e+00  2.28e+01   4.8*sigma
   A  76  SER  C
   A  76  SER  CA
   A  76  SER  CB        110.10   118.95    -8.85  1.90e+00  2.17e+01   4.7*sigma
   A 138  HIS  ND1
   A 138  HIS  CG
   A 138  HIS  CD2       106.10   110.75    -4.65  1.00e+00  2.16e+01   4.6*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.71    -4.61  1.00e+00  2.12e+01   4.6*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.41    -4.31  1.00e+00  1.86e+01   4.3*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   110.39    -4.29  1.00e+00  1.84e+01   4.3*sigma
   A 134  HIS  ND1
   A 134  HIS  CG
   A 134  HIS  CD2       106.10   110.34    -4.24  1.00e+00  1.80e+01   4.2*sigma
   A 136  HIS  ND1
   A 136  HIS  CG
   A 136  HIS  CD2       106.10   110.28    -4.18  1.00e+00  1.75e+01   4.2*sigma
   A  53  LEU  CB
   A  53  LEU  CG
   A  53  LEU  CD1       110.70   123.11   -12.41  3.00e+00  1.71e+01   4.1*sigma
   A  74  ASP  C
   A  75  GLU  N
   A  75  GLU  CA        121.70   129.02    -7.32  1.80e+00  1.65e+01   4.1*sigma
   A 138  HIS  C
   A 139  HIS  N
   A 139  HIS  CA        121.70   128.95    -7.25  1.80e+00  1.62e+01   4.0*sigma
   A 116  ASP  CA
   A 116  ASP  C
   A 117  PRO  N         116.90   122.93    -6.03  1.50e+00  1.61e+01   4.0*sigma

  Min. delta:    0.002 (Z=  0.001)
  Max. delta:   12.414 (Z=  6.308)
  Mean delta:    2.164 (Z=  1.213)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 138  HIS  CA
   A 138  HIS  C
   A 139  HIS  N
   A 139  HIS  CA        180.00   155.33    24.67  5.00e+00  2.43e+01   4.9*sigma
   A 137  HIS  CA
   A 137  HIS  C
   A 138  HIS  N
   A 138  HIS  CA        180.00   155.79    24.21  5.00e+00  2.34e+01   4.8*sigma

  Min. delta:    0.002
  Max. delta:   69.051
  Mean delta:   10.175

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.352
  Mean delta:    0.101

                       ----------Planar groups----------                       

  atoms                 rms_deltas   delta_max    residual   deviation
   A  12  TYR  CB
   A  12  TYR  CG
   A  12  TYR  CD1
   A  12  TYR  CD2
   A  12  TYR  CE1
   A  12  TYR  CE2
   A  12  TYR  CZ
   A  12  TYR  OH            0.056       0.104       61.81   5.2*sigma

  Min. delta:    0.000
  Max. delta:    0.093
  Mean delta:    0.013

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

                       ----------Angle outliers----------                      

   A  53  LEU  HG , Angle CD2-CG-HG, observed: 122.724, delta from target: -14.724

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.011   0.062   2241  Z= 0.592
    Angle     :  1.942  14.724   4077  Z= 0.882
    Chirality :  0.101   0.352    176
    Planarity :  0.010   0.069    326
    Dihedral  :  8.913  69.051    768
    Min Nonbonded Distance : 1.712
  
  Molprobity Statistics.
    All-atom Clashscore : 4.96
    Ramachandran Plot:
      Outliers :  1.46 %
      Allowed  :  9.49 %
      Favored  : 89.05 %
    Rotamer:
      Outliers :  0.00 %
      Allowed  :  4.03 %
      Favored  : 95.97 %
    Cbeta Deviations :  0.76 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.00 %
      Twisted Proline : 0.00 %
      Twisted General : 0.00 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -1.01 (0.68), residues: 137
    helix:  1.07 (0.60), residues: 68
    sheet:  None (None), residues: 0
    loop : -2.65 (0.67), residues: 69
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.004   0.001   HIS A 139 
   PHE   0.081   0.012   PHE A  45 
   TYR   0.140   0.024   TYR A  12 
   ARG   0.087   0.013   ARG A  21 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.004   0.001   HIS A 139 
   PHE   0.041   0.009   PHE A  45 
   TYR   0.104   0.024   TYR A  12 
   ARG   0.041   0.006   ARG A  21 

                     ----------Asn/Gln/His flips----------                     

   A  43  HIS
   A 100  GLN

=================================== Summary ===================================


End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000 (Z=  0.003)
  Max. delta:    0.047 (Z=  3.500)
  Mean delta:    0.016 (Z=  0.850)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 116  ASP  CA
   A 116  ASP  C
   A 117  PRO  N         116.90   125.74    -8.84  1.50e+00  3.47e+01   5.9*sigma
   A  49  GLU  C
   A  50  TYR  N
   A  50  TYR  CA        121.70   132.07   -10.37  1.80e+00  3.32e+01   5.8*sigma
   A  77  ILE  CB
   A  77  ILE  CG1
   A  77  ILE  CD1       113.80   125.23   -11.43  2.10e+00  2.96e+01   5.4*sigma
   A  49  GLU  O
   A  49  GLU  C
   A  50  TYR  N         123.00   114.67     8.33  1.60e+00  2.71e+01   5.2*sigma
   A  29  ASP  CA
   A  29  ASP  CB
   A  29  ASP  CG        112.60   117.78    -5.18  1.00e+00  2.69e+01   5.2*sigma
   A  84  GLU  N
   A  84  GLU  CA
   A  84  GLU  CB        110.50   119.10    -8.60  1.70e+00  2.56e+01   5.1*sigma
   A 103  ASP  CA
   A 103  ASP  CB
   A 103  ASP  CG        112.60   117.49    -4.89  1.00e+00  2.39e+01   4.9*sigma
   A 115  ALA  N
   A 115  ALA  CA
   A 115  ALA  CB        110.40   117.45    -7.05  1.50e+00  2.21e+01   4.7*sigma
   A  72  ASN  N
   A  72  ASN  CA
   A  72  ASN  CB        110.50   118.42    -7.92  1.70e+00  2.17e+01   4.7*sigma
   A 136  HIS  ND1
   A 136  HIS  CG
   A 136  HIS  CD2       106.10   110.54    -4.44  1.00e+00  1.97e+01   4.4*sigma
   A  84  GLU  CB
   A  84  GLU  CG
   A  84  GLU  CD        112.60   120.10    -7.50  1.70e+00  1.94e+01   4.4*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   110.42    -4.32  1.00e+00  1.87e+01   4.3*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.37    -4.27  1.00e+00  1.82e+01   4.3*sigma
   A 134  HIS  ND1
   A 134  HIS  CG
   A 134  HIS  CD2       106.10   110.29    -4.19  1.00e+00  1.76e+01   4.2*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.26    -4.16  1.00e+00  1.73e+01   4.2*sigma
   A 116  ASP  CA
   A 116  ASP  CB
   A 116  ASP  CG        112.60   108.47     4.13  1.00e+00  1.71e+01   4.1*sigma
   A  78  ILE  O
   A  78  ILE  C
   A  79  LYS  N         123.00   116.40     6.60  1.60e+00  1.70e+01   4.1*sigma
   A  43  HIS  ND1
   A  43  HIS  CG
   A  43  HIS  CD2       106.10   110.20    -4.10  1.00e+00  1.68e+01   4.1*sigma
   A 101  LYS  CA
   A 101  LYS  C
   A 102  PRO  N         116.90   123.00    -6.10  1.50e+00  1.65e+01   4.1*sigma
   A 138  HIS  ND1
   A 138  HIS  CG
   A 138  HIS  CD2       106.10   110.15    -4.05  1.00e+00  1.64e+01   4.1*sigma

  Min. delta:    0.001 (Z=  0.001)
  Max. delta:   11.429 (Z=  5.893)
  Mean delta:    2.319 (Z=  1.296)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 117  PRO  CA
   A 117  PRO  C
   A 118  ASP  N
   A 118  ASP  CA        180.00   145.92    34.08  5.00e+00  4.64e+01   6.8*sigma
   A  82  THR  CA
   A  82  THR  C
   A  83  THR  N
   A  83  THR  CA        180.00   146.98    33.02  5.00e+00  4.36e+01   6.6*sigma
   A  84  GLU  CA
   A  84  GLU  C
   A  85  LYS  N
   A  85  LYS  CA        180.00   150.73    29.27  5.00e+00  3.43e+01   5.9*sigma
   A  80  GLY  CA
   A  80  GLY  C
   A  81  TYR  N
   A  81  TYR  CA        180.00   154.12    25.88  5.00e+00  2.68e+01   5.2*sigma
   A  79  LYS  CA
   A  79  LYS  C
   A  80  GLY  N
   A  80  GLY  CA        180.00   156.64    23.36  5.00e+00  2.18e+01   4.7*sigma
   A 119  LEU  CA
   A 119  LEU  C
   A 120  GLU  N
   A 120  GLU  CA        180.00   157.30    22.70  5.00e+00  2.06e+01   4.5*sigma
   A 132  LEU  CA
   A 132  LEU  C
   A 133  GLU  N
   A 133  GLU  CA        180.00   157.94    22.06  5.00e+00  1.95e+01   4.4*sigma
   A  77  ILE  CA
   A  77  ILE  C
   A  78  ILE  N
   A  78  ILE  CA        180.00   158.33    21.67  5.00e+00  1.88e+01   4.3*sigma
   A  52  PRO  CA
   A  52  PRO  C
   A  53  LEU  N
   A  53  LEU  CA        180.00   159.91    20.09  5.00e+00  1.61e+01   4.0*sigma

  Min. delta:    0.010
  Max. delta:   62.917
  Mean delta:   11.117

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.499
  Mean delta:    0.117

                       ----------Planar groups----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.120
  Mean delta:    0.016

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.011   0.047   2241  Z= 0.605
    Angle     :  2.065  11.772   4077  Z= 0.939
    Chirality :  0.117   0.499    176
    Planarity :  0.013   0.094    326
    Dihedral  :  9.916  62.917    768
    Min Nonbonded Distance : 1.679
  
  Molprobity Statistics.
    All-atom Clashscore : 4.96
    Ramachandran Plot:
      Outliers :  7.30 %
      Allowed  : 14.60 %
      Favored  : 78.10 %
    Rotamer:
      Outliers :  0.81 %
      Allowed  :  0.81 %
      Favored  : 98.39 %
    Cbeta Deviations :  2.27 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.76 %
      Twisted Proline : 0.00 %
      Twisted General : 1.53 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -0.97 (0.79), residues: 137
    helix:  1.91 (0.62), residues: 57
    sheet:  None (None), residues: 0
    loop : -2.81 (0.80), residues: 80
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.005   0.001   HIS A 139 
   PHE   0.057   0.013   PHE A  45 
   TYR   0.137   0.026   TYR A 111 
   ARG   0.093   0.015   ARG A  21 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.005   0.001   HIS A 139 
   PHE   0.029   0.011   PHE A  15 
   TYR   0.103   0.024   TYR A 111 
   ARG   0.011   0.004   ARG A 129 

                     ----------Asn/Gln/His flips----------                     

  No backwards Asn/Gln/His sidechains found.

=================================== Summary ===================================


End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000 (Z=  0.003)
  Max. delta:    0.053 (Z=  3.818)
  Mean delta:    0.016 (Z=  0.843)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 116  ASP  CA
   A 116  ASP  C
   A 117  PRO  N         116.90   129.90   -13.00  1.50e+00  7.51e+01   8.7*sigma
   A 113  LYS  CA
   A 113  LYS  C
   A 114  PRO  N         116.90   126.62    -9.72  1.50e+00  4.20e+01   6.5*sigma
   A 116  ASP  O
   A 116  ASP  C
   A 117  PRO  N         123.00   114.81     8.19  1.60e+00  2.62e+01   5.1*sigma
   A  45  PHE  CA
   A  45  PHE  CB
   A  45  PHE  CG        113.80   108.72     5.08  1.00e+00  2.58e+01   5.1*sigma
   A 114  PRO  CA
   A 114  PRO  C
   A 115  ALA  N         116.20   125.77    -9.57  2.00e+00  2.29e+01   4.8*sigma
   A  58  ARG  NE
   A  58  ARG  CZ
   A  58  ARG  NH2       119.20   123.47    -4.27  9.00e-01  2.25e+01   4.7*sigma
   A  43  HIS  ND1
   A  43  HIS  CG
   A  43  HIS  CD2       106.10   110.52    -4.42  1.00e+00  1.95e+01   4.4*sigma
   A  78  ILE  C
   A  79  LYS  N
   A  79  LYS  CA        121.70   129.64    -7.94  1.80e+00  1.95e+01   4.4*sigma
   A 134  HIS  ND1
   A 134  HIS  CG
   A 134  HIS  CD2       106.10   110.46    -4.36  1.00e+00  1.90e+01   4.4*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.42    -4.32  1.00e+00  1.87e+01   4.3*sigma
   A 114  PRO  O
   A 114  PRO  C
   A 115  ALA  N         123.00   116.43     6.57  1.60e+00  1.69e+01   4.1*sigma
   A  15  PHE  CA
   A  15  PHE  CB
   A  15  PHE  CG        113.80   109.72     4.08  1.00e+00  1.67e+01   4.1*sigma
   A 138  HIS  CA
   A 138  HIS  CB
   A 138  HIS  CG        113.80   117.83    -4.03  1.00e+00  1.62e+01   4.0*sigma
   A 136  HIS  ND1
   A 136  HIS  CG
   A 136  HIS  CD2       106.10   110.12    -4.02  1.00e+00  1.62e+01   4.0*sigma

  Min. delta:    0.000 (Z=  0.000)
  Max. delta:   12.997 (Z=  8.665)
  Mean delta:    2.226 (Z=  1.255)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  90  SER  CA
   A  90  SER  C
   A  91  TYR  N
   A  91  TYR  CA        180.00   143.64    36.36  5.00e+00  5.29e+01   7.3*sigma
   A 117  PRO  CA
   A 117  PRO  C
   A 118  ASP  N
   A 118  ASP  CA        180.00   149.64    30.36  5.00e+00  3.69e+01   6.1*sigma
   A  21  ARG  CA
   A  21  ARG  C
   A  22  PRO  N
   A  22  PRO  CA        180.00   154.37    25.63  5.00e+00  2.63e+01   5.1*sigma
   A 138  HIS  CA
   A 138  HIS  C
   A 139  HIS  N
   A 139  HIS  CA        180.00   159.79    20.21  5.00e+00  1.63e+01   4.0*sigma

  Min. delta:    0.037
  Max. delta:   58.931
  Mean delta:   10.705

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.001
  Max. delta:    0.495
  Mean delta:    0.105

                       ----------Planar groups----------                       

  atoms                 rms_deltas   delta_max    residual   deviation
   A 105  TYR  CB
   A 105  TYR  CG
   A 105  TYR  CD1
   A 105  TYR  CD2
   A 105  TYR  CE1
   A 105  TYR  CE2
   A 105  TYR  CZ
   A 105  TYR  OH            0.119       0.130      282.25   6.5*sigma

  Min. delta:    0.000
  Max. delta:    0.119
  Mean delta:    0.017

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.011   0.053   2241  Z= 0.600
    Angle     :  1.979  12.997   4077  Z= 0.907
    Chirality :  0.105   0.495    176
    Planarity :  0.013   0.126    326
    Dihedral  :  9.961  59.897    768
    Min Nonbonded Distance : 1.751
  
  Molprobity Statistics.
    All-atom Clashscore : 4.51
    Ramachandran Plot:
      Outliers :  5.11 %
      Allowed  : 12.41 %
      Favored  : 82.48 %
    Rotamer:
      Outliers :  0.00 %
      Allowed  :  0.81 %
      Favored  : 99.19 %
    Cbeta Deviations :  1.52 %
    Peptide Plane:
      Cis-proline     : 14.29 %
      Cis-general     : 0.76 %
      Twisted Proline : 0.00 %
      Twisted General : 1.53 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -0.99 (0.69), residues: 137
    helix:  1.26 (0.57), residues: 68
    sheet:  None (None), residues: 0
    loop : -2.85 (0.70), residues: 69
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.006   0.002   HIS A 138 
   PHE   0.084   0.023   PHE A  67 
   TYR   0.281   0.031   TYR A 105 
   ARG   0.033   0.011   ARG A  21 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.006   0.002   HIS A 138 
   PHE   0.041   0.018   PHE A  45 
   TYR   0.214   0.031   TYR A 105 
   ARG   0.014   0.004   ARG A  21 

                     ----------Asn/Gln/His flips----------                     

  No backwards Asn/Gln/His sidechains found.

=================================== Summary ===================================

  Ramachandran outliers =   1.46 %
                favored =  89.05 %
  Rotamer outliers      =   0.00 %
  C-beta deviations     =     1
  Clashscore            =   4.96
  RMS(bonds)            =   0.0112
  RMS(angles)           =   1.94
  MolProbity score      =   1.83

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py
  Ramachandran outliers =   4.38 %
                favored =  85.40 %
  Rotamer outliers      =   0.00 %
  C-beta deviations     =     4
  Clashscore            =   3.16
  RMS(bonds)            =   0.0112
  RMS(angles)           =   1.96
  MolProbity score      =   1.76

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py
Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  

  Ramachandran outliers =   5.11 %
                favored =  82.48 %
  Rotamer outliers      =   0.00 %
  C-beta deviations     =     2
  Clashscore            =   4.51
  RMS(bonds)            =   0.0112
  RMS(angles)           =   1.98
  MolProbity score      =   1.93

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py
  Ramachandran outliers =   7.30 %
                favored =  78.10 %
  Rotamer outliers      =   0.81 %
  C-beta deviations     =     3
  Clashscore            =   4.96
  RMS(bonds)            =   0.0114
  RMS(angles)           =   2.07
  MolProbity score      =   2.02

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py

End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000 (Z=  0.000)
  Max. delta:    0.055 (Z=  3.915)
  Mean delta:    0.016 (Z=  0.851)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 113  LYS  CA
   A 113  LYS  C
   A 114  PRO  N         116.90   128.77   -11.87  1.50e+00  6.26e+01   7.9*sigma
   A  74  ASP  CA
   A  74  ASP  CB
   A  74  ASP  CG        112.60   118.93    -6.33  1.00e+00  4.00e+01   6.3*sigma
   A  46  SER  CA
   A  46  SER  CB
   A  46  SER  OG        111.10   122.09   -10.99  2.00e+00  3.02e+01   5.5*sigma
   A   8  GLU  CB
   A   8  GLU  CG
   A   8  GLU  CD        112.60   103.85     8.75  1.70e+00  2.65e+01   5.1*sigma
   A  53  LEU  CA
   A  53  LEU  C
   A  54  PRO  N         116.90   124.18    -7.28  1.50e+00  2.35e+01   4.9*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   110.83    -4.73  1.00e+00  2.24e+01   4.7*sigma
   A 100  GLN  CB
   A 100  GLN  CG
   A 100  GLN  CD        112.60   104.84     7.76  1.70e+00  2.08e+01   4.6*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.65    -4.55  1.00e+00  2.07e+01   4.5*sigma
   A  43  HIS  ND1
   A  43  HIS  CG
   A  43  HIS  CD2       106.10   110.62    -4.52  1.00e+00  2.04e+01   4.5*sigma
   A 138  HIS  ND1
   A 138  HIS  CG
   A 138  HIS  CD2       106.10   110.56    -4.46  1.00e+00  1.99e+01   4.5*sigma
   A 134  HIS  ND1
   A 134  HIS  CG
   A 134  HIS  CD2       106.10   110.55    -4.45  1.00e+00  1.98e+01   4.5*sigma
   A 116  ASP  CA
   A 116  ASP  C
   A 117  PRO  N         116.90   123.49    -6.59  1.50e+00  1.93e+01   4.4*sigma
   A 135  HIS  CA
   A 135  HIS  CB
   A 135  HIS  CG        113.80   118.19    -4.39  1.00e+00  1.93e+01   4.4*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.43    -4.33  1.00e+00  1.87e+01   4.3*sigma
   A  58  ARG  NE
   A  58  ARG  CZ
   A  58  ARG  NH2       119.20   122.87    -3.67  9.00e-01  1.66e+01   4.1*sigma
   A   2  LEU  CD1
   A   2  LEU  CG
   A   2  LEU  CD2       110.80   101.95     8.85  2.20e+00  1.62e+01   4.0*sigma

  Min. delta:    0.000 (Z=  0.000)
  Max. delta:   11.867 (Z=  7.912)
  Mean delta:    2.317 (Z=  1.301)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  87  GLY  CA
   A  87  GLY  C
   A  88  ASP  N
   A  88  ASP  CA        180.00   150.78    29.22  5.00e+00  3.42e+01   5.8*sigma
   A 116  ASP  CA
   A 116  ASP  C
   A 117  PRO  N
   A 117  PRO  CA        180.00   154.71    25.29  5.00e+00  2.56e+01   5.1*sigma
   A 120  GLU  CA
   A 120  GLU  C
   A 121  GLY  N
   A 121  GLY  CA        180.00  -155.67   -24.33  5.00e+00  2.37e+01   4.9*sigma
   A 115  ALA  CA
   A 115  ALA  C
   A 116  ASP  N
   A 116  ASP  CA        180.00   158.23    21.77  5.00e+00  1.90e+01   4.4*sigma
   A 117  PRO  CA
   A 117  PRO  C
   A 118  ASP  N
   A 118  ASP  CA        180.00   158.57    21.43  5.00e+00  1.84e+01   4.3*sigma
   A  77  ILE  CA
   A  77  ILE  C
   A  78  ILE  N
   A  78  ILE  CA        180.00   159.77    20.23  5.00e+00  1.64e+01   4.0*sigma

  Min. delta:    0.016
  Max. delta:   72.298
  Mean delta:   11.858

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.001
  Max. delta:    0.346
  Mean delta:    0.106

                       ----------Planar groups----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.106
  Mean delta:    0.016

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.012   0.055   2241  Z= 0.605
    Angle     :  2.055  11.867   4077  Z= 0.939
    Chirality :  0.106   0.346    176
    Planarity :  0.013   0.106    326
    Dihedral  : 11.507  72.298    768
    Min Nonbonded Distance : 1.633
  
  Molprobity Statistics.
    All-atom Clashscore : 4.96
    Ramachandran Plot:
      Outliers :  5.11 %
      Allowed  : 10.22 %
      Favored  : 84.67 %
    Rotamer:
      Outliers :  0.81 %
      Allowed  :  3.23 %
      Favored  : 95.97 %
    Cbeta Deviations :  1.52 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.00 %
      Twisted Proline : 0.00 %
      Twisted General : 0.00 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -1.07 (0.72), residues: 137
    helix:  1.04 (0.60), residues: 65
    sheet:  None (None), residues: 0
    loop : -2.53 (0.75), residues: 72
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.006   0.002   HIS A 139 
   PHE   0.131   0.034   PHE A  45 
   TYR   0.118   0.017   TYR A  12 
   ARG   0.065   0.014   ARG A  58 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.006   0.002   HIS A 139 
   PHE   0.049   0.017   PHE A  45 
   TYR   0.087   0.015   TYR A  12 
   ARG   0.038   0.009   ARG A  58 

                     ----------Asn/Gln/His flips----------                     

   A  66  GLN

=================================== Summary ===================================


End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000 (Z=  0.000)
  Max. delta:    0.050 (Z=  3.870)
  Mean delta:    0.017 (Z=  0.895)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  30  ILE  CA
   A  30  ILE  CB
   A  30  ILE  CG1       110.40   119.74    -9.34  1.70e+00  3.02e+01   5.5*sigma
   A 111  TYR  C
   A 111  TYR  CA
   A 111  TYR  CB        110.10   100.36     9.74  1.90e+00  2.63e+01   5.1*sigma
   A   7  ASP  CA
   A   7  ASP  CB
   A   7  ASP  CG        112.60   107.49     5.11  1.00e+00  2.61e+01   5.1*sigma
   A  42  GLY  C
   A  43  HIS  N
   A  43  HIS  CA        121.70   130.33    -8.63  1.80e+00  2.30e+01   4.8*sigma
   A  53  LEU  CA
   A  53  LEU  C
   A  54  PRO  N         116.90   124.03    -7.13  1.50e+00  2.26e+01   4.8*sigma
   A 136  HIS  ND1
   A 136  HIS  CG
   A 136  HIS  CD2       106.10   110.78    -4.68  1.00e+00  2.19e+01   4.7*sigma
   A 101  LYS  CA
   A 101  LYS  C
   A 102  PRO  N         116.90   123.71    -6.81  1.50e+00  2.06e+01   4.5*sigma
   A 136  HIS  C
   A 136  HIS  CA
   A 136  HIS  CB        110.10   101.59     8.51  1.90e+00  2.00e+01   4.5*sigma
   A  84  GLU  C
   A  85  LYS  N
   A  85  LYS  CA        121.70   129.74    -8.04  1.80e+00  1.99e+01   4.5*sigma
   A 138  HIS  ND1
   A 138  HIS  CG
   A 138  HIS  CD2       106.10   110.56    -4.46  1.00e+00  1.99e+01   4.5*sigma
   A  61  LEU  CD1
   A  61  LEU  CG
   A  61  LEU  CD2       110.80   101.14     9.66  2.20e+00  1.93e+01   4.4*sigma
   A  43  HIS  ND1
   A  43  HIS  CG
   A  43  HIS  CD2       106.10   110.49    -4.39  1.00e+00  1.93e+01   4.4*sigma
   A  26  LEU  CD1
   A  26  LEU  CG
   A  26  LEU  CD2       110.80   101.61     9.19  2.20e+00  1.75e+01   4.2*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.26    -4.16  1.00e+00  1.73e+01   4.2*sigma
   A 134  HIS  ND1
   A 134  HIS  CG
   A 134  HIS  CD2       106.10   110.24    -4.14  1.00e+00  1.71e+01   4.1*sigma
   A  14  VAL  N
   A  14  VAL  CA
   A  14  VAL  CB        111.50   118.48    -6.98  1.70e+00  1.69e+01   4.1*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.19    -4.09  1.00e+00  1.67e+01   4.1*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   110.18    -4.08  1.00e+00  1.67e+01   4.1*sigma
   A  21  ARG  CA
   A  21  ARG  C
   A  22  PRO  N         116.90   123.00    -6.10  1.50e+00  1.65e+01   4.1*sigma
   A   2  LEU  CB
   A   2  LEU  CG
   A   2  LEU  CD1       110.70   122.87   -12.17  3.00e+00  1.65e+01   4.1*sigma
   A 112  VAL  O
   A 112  VAL  C
   A 113  LYS  N         123.00   116.54     6.46  1.60e+00  1.63e+01   4.0*sigma

  Min. delta:    0.001 (Z=  0.000)
  Max. delta:   12.169 (Z=  5.493)
  Mean delta:    2.348 (Z=  1.291)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 135  HIS  CA
   A 135  HIS  C
   A 136  HIS  N
   A 136  HIS  CA        180.00  -140.39   -39.61  5.00e+00  6.28e+01   7.9*sigma
   A 136  HIS  CA
   A 136  HIS  C
   A 137  HIS  N
   A 137  HIS  CA        180.00   144.42    35.58  5.00e+00  5.06e+01   7.1*sigma
   A 137  HIS  CA
   A 137  HIS  C
   A 138  HIS  N
   A 138  HIS  CA        180.00   146.31    33.69  5.00e+00  4.54e+01   6.7*sigma
   A  77  ILE  CA
   A  77  ILE  C
   A  78  ILE  N
   A  78  ILE  CA        180.00   153.86    26.14  5.00e+00  2.73e+01   5.2*sigma
   A  13  SER  CA
   A  13  SER  C
   A  14  VAL  N
   A  14  VAL  CA        180.00   154.17    25.83  5.00e+00  2.67e+01   5.2*sigma
   A  93  LEU  CA
   A  93  LEU  C
   A  94  GLY  N
   A  94  GLY  CA        180.00   154.37    25.63  5.00e+00  2.63e+01   5.1*sigma
   A 112  VAL  CA
   A 112  VAL  C
   A 113  LYS  N
   A 113  LYS  CA        180.00   157.15    22.85  5.00e+00  2.09e+01   4.6*sigma
   A 138  HIS  CA
   A 138  HIS  C
   A 139  HIS  N
   A 139  HIS  CA        180.00   158.37    21.63  5.00e+00  1.87e+01   4.3*sigma
   A  84  GLU  CA
   A  84  GLU  C
   A  85  LYS  N
   A  85  LYS  CA        180.00   159.68    20.32  5.00e+00  1.65e+01   4.1*sigma

  Min. delta:    0.007
  Max. delta:   87.449
  Mean delta:   11.849

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.482
  Mean delta:    0.111

                       ----------Planar groups----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.094
  Mean delta:    0.016

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

                       ----------Angle outliers----------                      

   A  85  LYS  HA , Angle C-CA-HA, observed: 95.520, delta from target: 13.480

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.012   0.050   2241  Z= 0.637
    Angle     :  2.111  13.480   4077  Z= 0.945
    Chirality :  0.111   0.482    176
    Planarity :  0.013   0.094    326
    Dihedral  : 10.405  87.449    768
    Min Nonbonded Distance : 1.729
  
  Molprobity Statistics.
    All-atom Clashscore : 6.31
    Ramachandran Plot:
      Outliers :  4.38 %
      Allowed  : 12.41 %
      Favored  : 83.21 %
    Rotamer:
      Outliers :  0.00 %
      Allowed  :  0.81 %
      Favored  : 99.19 %
    Cbeta Deviations :  3.79 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.00 %
      Twisted Proline : 0.00 %
      Twisted General : 2.29 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -1.10 (0.68), residues: 137
    helix:  0.98 (0.68), residues: 55
    sheet:  None (None), residues: 0
    loop : -2.09 (0.63), residues: 82
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.005   0.002   HIS A 139 
   PHE   0.086   0.016   PHE A  15 
   TYR   0.151   0.022   TYR A  91 
   ARG   0.057   0.012   ARG A  21 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.005   0.002   HIS A 139 
   PHE   0.053   0.014   PHE A  15 
   TYR   0.115   0.018   TYR A  91 
   ARG   0.035   0.007   ARG A  21 

                     ----------Asn/Gln/His flips----------                     

   A  66  GLN

=================================== Summary ===================================


============================== Collecting inputs ==============================


End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000 (Z=  0.000)
  Max. delta:    0.055 (Z=  3.403)
  Mean delta:    0.016 (Z=  0.861)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  30  ILE  CA
   A  30  ILE  CB
   A  30  ILE  CG1       110.40   119.60    -9.20  1.70e+00  2.93e+01   5.4*sigma
   A  44  ASP  CA
   A  44  ASP  CB
   A  44  ASP  CG        112.60   107.19     5.41  1.00e+00  2.92e+01   5.4*sigma
   A  42  GLY  C
   A  43  HIS  N
   A  43  HIS  CA        121.70   130.70    -9.00  1.80e+00  2.50e+01   5.0*sigma
   A  43  HIS  ND1
   A  43  HIS  CG
   A  43  HIS  CD2       106.10   110.92    -4.82  1.00e+00  2.32e+01   4.8*sigma
   A  90  SER  N
   A  90  SER  CA
   A  90  SER  CB        110.50   118.47    -7.97  1.70e+00  2.20e+01   4.7*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.63    -4.53  1.00e+00  2.05e+01   4.5*sigma
   A 113  LYS  CA
   A 113  LYS  C
   A 114  PRO  N         116.90   123.64    -6.74  1.50e+00  2.02e+01   4.5*sigma
   A  75  GLU  C
   A  76  SER  N
   A  76  SER  CA        121.70   129.73    -8.03  1.80e+00  1.99e+01   4.5*sigma
   A  50  TYR  C
   A  51  ILE  N
   A  51  ILE  CA        121.70   129.70    -8.00  1.80e+00  1.98e+01   4.4*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   110.53    -4.43  1.00e+00  1.96e+01   4.4*sigma
   A 101  LYS  CA
   A 101  LYS  C
   A 102  PRO  N         116.90   123.43    -6.53  1.50e+00  1.89e+01   4.4*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.41    -4.31  1.00e+00  1.86e+01   4.3*sigma
   A 136  HIS  ND1
   A 136  HIS  CG
   A 136  HIS  CD2       106.10   110.41    -4.31  1.00e+00  1.86e+01   4.3*sigma
   A  61  LEU  CD1
   A  61  LEU  CG
   A  61  LEU  CD2       110.80   101.49     9.31  2.20e+00  1.79e+01   4.2*sigma
   A  46  SER  CA
   A  46  SER  CB
   A  46  SER  OG        111.10   119.46    -8.36  2.00e+00  1.75e+01   4.2*sigma
   A  88  ASP  C
   A  89  TYR  N
   A  89  TYR  CA        121.70   129.20    -7.50  1.80e+00  1.74e+01   4.2*sigma
   A 134  HIS  ND1
   A 134  HIS  CG
   A 134  HIS  CD2       106.10   110.15    -4.05  1.00e+00  1.64e+01   4.0*sigma
   A 138  HIS  ND1
   A 138  HIS  CG
   A 138  HIS  CD2       106.10   110.14    -4.04  1.00e+00  1.63e+01   4.0*sigma

  Min. delta:    0.001 (Z=  0.000)
  Max. delta:   10.506 (Z=  5.414)
  Mean delta:    2.206 (Z=  1.227)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 100  GLN  CA
   A 100  GLN  C
   A 101  LYS  N
   A 101  LYS  CA        180.00   154.05    25.95  5.00e+00  2.69e+01   5.2*sigma
   A  51  ILE  CA
   A  51  ILE  C
   A  52  PRO  N
   A  52  PRO  CA        180.00   159.73    20.27  5.00e+00  1.64e+01   4.1*sigma
   A 116  ASP  CA
   A 116  ASP  C
   A 117  PRO  N
   A 117  PRO  CA        180.00   159.91    20.09  5.00e+00  1.61e+01   4.0*sigma

  Min. delta:    0.055
  Max. delta:   61.520
  Mean delta:   10.246

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.277
  Mean delta:    0.091

                       ----------Planar groups----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.068
  Mean delta:    0.014

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.012   0.055   2241  Z= 0.613
    Angle     :  1.972  11.044   4077  Z= 0.892
    Chirality :  0.091   0.277    176
    Planarity :  0.010   0.060    326
    Dihedral  :  9.084  61.520    768
    Min Nonbonded Distance : 1.734
  
  Molprobity Statistics.
    All-atom Clashscore : 3.61
    Ramachandran Plot:
      Outliers :  2.19 %
      Allowed  : 10.22 %
      Favored  : 87.59 %
    Rotamer:
      Outliers :  0.00 %
      Allowed  :  0.00 %
      Favored  : 100.00 %
    Cbeta Deviations :  0.76 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.76 %
      Twisted Proline : 0.00 %
      Twisted General : 0.00 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -2.00 (0.63), residues: 137
    helix:  0.14 (0.56), residues: 62
    sheet:  None (None), residues: 0
    loop : -2.77 (0.63), residues: 75
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.005   0.001   HIS A 139 
   PHE   0.118   0.023   PHE A  15 
   TYR   0.072   0.013   TYR A  81 
   ARG   0.051   0.013   ARG A 129 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.005   0.001   HIS A 139 
   PHE   0.062   0.019   PHE A  15 
   TYR   0.056   0.012   TYR A  81 
   ARG   0.008   0.002   ARG A  21 

                     ----------Asn/Gln/His flips----------                     

  No backwards Asn/Gln/His sidechains found.

=================================== Summary ===================================


  Symmetric amino acids flipped
    Residue "A GLU    8": "OE1" <-> "OE2"
    Residue "A GLU   16": "OE1" <-> "OE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ASP   44": "OD1" <-> "OD2"
    Residue "A PHE   45": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR   50": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A PHE   67": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR   68": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU   84": "OE1" <-> "OE2"
    Residue "A TYR   91": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ASP  116": "OD1" <-> "OD2"
    Residue "A GLU  120": "OE1" <-> "OE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""

End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000 (Z=  0.000)
  Max. delta:    0.050 (Z=  3.426)
  Mean delta:    0.016 (Z=  0.847)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  88  ASP  CA
   A  88  ASP  CB
   A  88  ASP  CG        112.60   104.36     8.24  1.00e+00  6.78e+01   8.2*sigma
   A 116  ASP  CA
   A 116  ASP  C
   A 117  PRO  N         116.90   126.02    -9.12  1.50e+00  3.70e+01   6.1*sigma
   A 101  LYS  CA
   A 101  LYS  C
   A 102  PRO  N         116.90   124.86    -7.96  1.50e+00  2.81e+01   5.3*sigma
   A   5  THR  CA
   A   5  THR  C
   A   6  PRO  N         116.90   123.98    -7.08  1.50e+00  2.23e+01   4.7*sigma
   A 115  ALA  C
   A 115  ALA  CA
   A 115  ALA  CB        110.50   103.53     6.97  1.50e+00  2.16e+01   4.6*sigma
   A 117  PRO  N
   A 117  PRO  CD
   A 117  PRO  CG        103.20   109.90    -6.70  1.50e+00  1.99e+01   4.5*sigma
   A 134  HIS  ND1
   A 134  HIS  CG
   A 134  HIS  CD2       106.10   110.51    -4.41  1.00e+00  1.94e+01   4.4*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   110.42    -4.32  1.00e+00  1.87e+01   4.3*sigma
   A  53  LEU  CA
   A  53  LEU  C
   A  54  PRO  N         116.90   123.34    -6.44  1.50e+00  1.84e+01   4.3*sigma
   A 116  ASP  CA
   A 116  ASP  CB
   A 116  ASP  CG        112.60   116.86    -4.26  1.00e+00  1.82e+01   4.3*sigma
   A 138  HIS  ND1
   A 138  HIS  CG
   A 138  HIS  CD2       106.10   110.33    -4.23  1.00e+00  1.79e+01   4.2*sigma
   A  98  SER  C
   A  98  SER  CA
   A  98  SER  CB        110.10   102.11     7.99  1.90e+00  1.77e+01   4.2*sigma
   A 136  HIS  ND1
   A 136  HIS  CG
   A 136  HIS  CD2       106.10   110.31    -4.21  1.00e+00  1.77e+01   4.2*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.29    -4.19  1.00e+00  1.75e+01   4.2*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.25    -4.15  1.00e+00  1.72e+01   4.1*sigma
   A  82  THR  C
   A  83  THR  N
   A  83  THR  CA        121.70   128.97    -7.27  1.80e+00  1.63e+01   4.0*sigma
   A  51  ILE  CA
   A  51  ILE  C
   A  52  PRO  N         116.90   122.94    -6.04  1.50e+00  1.62e+01   4.0*sigma

  Min. delta:    0.001 (Z=  0.001)
  Max. delta:    9.715 (Z=  8.237)
  Mean delta:    2.324 (Z=  1.277)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 122  ILE  CA
   A 122  ILE  C
   A 123  GLU  N
   A 123  GLU  CA        180.00   148.69    31.31  5.00e+00  3.92e+01   6.3*sigma
   A  91  TYR  CA
   A  91  TYR  C
   A  92  THR  N
   A  92  THR  CA        180.00   154.32    25.68  5.00e+00  2.64e+01   5.1*sigma

  Min. delta:    0.004
  Max. delta:   57.140
  Mean delta:   10.476

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.359
  Mean delta:    0.109

                       ----------Planar groups----------                       

  atoms                 rms_deltas   delta_max    residual   deviation
   A  68  TYR  CB
   A  68  TYR  CG
   A  68  TYR  CD1
   A  68  TYR  CD2
   A  68  TYR  CE1
   A  68  TYR  CE2
   A  68  TYR  CZ
   A  68  TYR  OH            0.073       0.139      107.60   7.0*sigma

  Min. delta:    0.000
  Max. delta:    0.073
  Mean delta:    0.015

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.011   0.050   2241  Z= 0.603
    Angle     :  2.052  10.767   4077  Z= 0.926
    Chirality :  0.109   0.359    176
    Planarity :  0.012   0.073    326
    Dihedral  :  9.782  59.988    768
    Min Nonbonded Distance : 1.740
  
  Molprobity Statistics.
    All-atom Clashscore : 6.77
    Ramachandran Plot:
      Outliers :  6.57 %
      Allowed  :  8.76 %
      Favored  : 84.67 %
    Rotamer:
      Outliers :  2.42 %
      Allowed  :  0.81 %
      Favored  : 96.77 %
    Cbeta Deviations :  0.76 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.00 %
      Twisted Proline : 0.00 %
      Twisted General : 0.76 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -2.29 (0.67), residues: 137
    helix: -0.03 (0.61), residues: 72
    sheet:  None (None), residues: 0
    loop : -3.43 (0.63), residues: 65
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.006   0.002   HIS A 139 
   PHE   0.131   0.029   PHE A  15 
   TYR   0.187   0.026   TYR A  68 
   ARG   0.043   0.006   ARG A  21 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.006   0.002   HIS A 139 
   PHE   0.066   0.025   PHE A  15 
   TYR   0.139   0.024   TYR A  68 
   ARG   0.011   0.002   ARG A  21 

                     ----------Asn/Gln/His flips----------                     

   A 100  GLN
   A 136  HIS

=================================== Summary ===================================


  Symmetric amino acids flipped
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   24": "OE1" <-> "OE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   84": "OE1" <-> "OE2"
    Residue "A TYR   89": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ASP   95": "OD1" <-> "OD2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""
  Ramachandran outliers =   5.11 %
                favored =  84.67 %
  Rotamer outliers      =   0.81 %
  C-beta deviations     =     2
  Clashscore            =   4.96
  RMS(bonds)            =   0.0115
  RMS(angles)           =   2.05
  MolProbity score      =   1.93

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py
  Ramachandran outliers =   4.38 %
                favored =  83.21 %
  Rotamer outliers      =   0.00 %
  C-beta deviations     =     5
  Clashscore            =   6.31
  RMS(bonds)            =   0.0120
  RMS(angles)           =   2.11
  MolProbity score      =   2.04

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py

End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  atoms                 ideal   model   delta   sigma   slack  residual   deviation
   A 134  HIS  CE1
   A 134  HIS  NE2         1.32     1.36    -0.04  1.00e-02  1.64e+01   4.1*sigma
   A 136  HIS  CE1
   A 136  HIS  NE2         1.32     1.36    -0.04  1.00e-02  1.63e+01   4.0*sigma
   A 139  HIS  CE1
   A 139  HIS  NE2         1.32     1.36    -0.04  1.00e-02  1.61e+01   4.0*sigma

  Min. delta:    0.000 (Z=  0.000)
  Max. delta:    0.047 (Z=  4.054)
  Mean delta:    0.017 (Z=  0.920)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 113  LYS  CA
   A 113  LYS  C
   A 114  PRO  N         116.90   124.66    -7.76  1.50e+00  2.68e+01   5.2*sigma
   A  51  ILE  CA
   A  51  ILE  C
   A  52  PRO  N         116.90   124.47    -7.57  1.50e+00  2.55e+01   5.0*sigma
   A 136  HIS  ND1
   A 136  HIS  CG
   A 136  HIS  CD2       106.10   110.56    -4.46  1.00e+00  1.99e+01   4.5*sigma
   A 134  HIS  ND1
   A 134  HIS  CG
   A 134  HIS  CD2       106.10   110.35    -4.25  1.00e+00  1.81e+01   4.3*sigma
   A  21  ARG  CA
   A  21  ARG  C
   A  22  PRO  N         116.90   123.27    -6.37  1.50e+00  1.80e+01   4.2*sigma
   A 139  HIS  ND1
   A 139  HIS  CE1
   A 139  HIS  NE2       108.40   112.53    -4.13  1.00e+00  1.71e+01   4.1*sigma
   A  15  PHE  N
   A  15  PHE  CA
   A  15  PHE  CB        110.50   117.50    -7.00  1.70e+00  1.70e+01   4.1*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.21    -4.11  1.00e+00  1.69e+01   4.1*sigma
   A  61  LEU  CD1
   A  61  LEU  CG
   A  61  LEU  CD2       110.80   101.82     8.98  2.20e+00  1.67e+01   4.1*sigma
   A 134  HIS  ND1
   A 134  HIS  CE1
   A 134  HIS  NE2       108.40   112.41    -4.01  1.00e+00  1.61e+01   4.0*sigma

  Min. delta:    0.003 (Z=  0.002)
  Max. delta:    8.983 (Z=  5.172)
  Mean delta:    2.110 (Z=  1.187)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 138  HIS  CA
   A 138  HIS  C
   A 139  HIS  N
   A 139  HIS  CA        180.00   141.77    38.23  5.00e+00  5.85e+01   7.6*sigma
   A 135  HIS  CA
   A 135  HIS  C
   A 136  HIS  N
   A 136  HIS  CA        180.00   145.65    34.35  5.00e+00  4.72e+01   6.9*sigma
   A  95  ASP  CA
   A  95  ASP  C
   A  96  GLY  N
   A  96  GLY  CA        180.00   147.66    32.34  5.00e+00  4.18e+01   6.5*sigma
   A 125  LYS  CA
   A 125  LYS  C
   A 126  VAL  N
   A 126  VAL  CA        180.00   150.05    29.95  5.00e+00  3.59e+01   6.0*sigma
   A  92  THR  CA
   A  92  THR  C
   A  93  LEU  N
   A  93  LEU  CA        180.00   154.29    25.71  5.00e+00  2.64e+01   5.1*sigma
   A  50  TYR  CA
   A  50  TYR  C
   A  51  ILE  N
   A  51  ILE  CA        180.00   155.23    24.77  5.00e+00  2.46e+01   5.0*sigma
   A 121  GLY  CA
   A 121  GLY  C
   A 122  ILE  N
   A 122  ILE  CA        180.00   158.81    21.19  5.00e+00  1.80e+01   4.2*sigma

  Min. delta:    0.004
  Max. delta:   60.137
  Mean delta:   10.200

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.351
  Mean delta:    0.093

                       ----------Planar groups----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.057
  Mean delta:    0.014

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.012   0.047   2241  Z= 0.655
    Angle     :  1.911  10.156   4077  Z= 0.867
    Chirality :  0.093   0.351    176
    Planarity :  0.011   0.057    326
    Dihedral  :  9.081  60.137    768
    Min Nonbonded Distance : 1.716
  
  Molprobity Statistics.
    All-atom Clashscore : 4.06
    Ramachandran Plot:
      Outliers :  4.38 %
      Allowed  :  8.76 %
      Favored  : 86.86 %
    Rotamer:
      Outliers :  0.00 %
      Allowed  :  0.00 %
      Favored  : 100.00 %
    Cbeta Deviations :  1.52 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.00 %
      Twisted Proline : 0.00 %
      Twisted General : 2.29 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -0.88 (0.73), residues: 137
    helix:  1.15 (0.59), residues: 69
    sheet:  None (None), residues: 0
    loop : -2.61 (0.78), residues: 68
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.008   0.002   HIS A 138 
   PHE   0.042   0.012   PHE A  15 
   TYR   0.116   0.023   TYR A  81 
   ARG   0.042   0.013   ARG A  21 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.008   0.002   HIS A 138 
   PHE   0.026   0.011   PHE A  15 
   TYR   0.057   0.018   TYR A  91 
   ARG   0.019   0.005   ARG A  21 

                     ----------Asn/Gln/His flips----------                     

  No backwards Asn/Gln/His sidechains found.

=================================== Summary ===================================

  Ramachandran outliers =   2.19 %
                favored =  87.59 %
  Rotamer outliers      =   0.00 %
  C-beta deviations     =     1
  Clashscore            =   3.61
  RMS(bonds)            =   0.0116
  RMS(angles)           =   1.97
  MolProbity score      =   1.76

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py

End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000 (Z=  0.000)
  Max. delta:    0.072 (Z=  3.938)
  Mean delta:    0.016 (Z=  0.853)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  98  SER  C
   A  99  LEU  N
   A  99  LEU  CA        121.70   133.18   -11.48  1.80e+00  4.07e+01   6.4*sigma
   A 113  LYS  CA
   A 113  LYS  C
   A 114  PRO  N         116.90   126.46    -9.56  1.50e+00  4.07e+01   6.4*sigma
   A 116  ASP  CA
   A 116  ASP  C
   A 117  PRO  N         116.90   126.25    -9.35  1.50e+00  3.89e+01   6.2*sigma
   A 116  ASP  CA
   A 116  ASP  CB
   A 116  ASP  CG        112.60   118.27    -5.67  1.00e+00  3.22e+01   5.7*sigma
   A 114  PRO  CA
   A 114  PRO  C
   A 115  ALA  N         116.20   127.32   -11.12  2.00e+00  3.09e+01   5.6*sigma
   A 116  ASP  O
   A 116  ASP  C
   A 117  PRO  N         123.00   114.74     8.26  1.60e+00  2.66e+01   5.2*sigma
   A 115  ALA  C
   A 116  ASP  N
   A 116  ASP  CA        121.70   130.28    -8.58  1.80e+00  2.27e+01   4.8*sigma
   A  52  PRO  N
   A  52  PRO  CA
   A  52  PRO  C         112.10   123.49   -11.39  2.50e+00  2.08e+01   4.6*sigma
   A 114  PRO  O
   A 114  PRO  C
   A 115  ALA  N         123.00   115.76     7.24  1.60e+00  2.05e+01   4.5*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.58    -4.48  1.00e+00  2.01e+01   4.5*sigma
   A  43  HIS  ND1
   A  43  HIS  CG
   A  43  HIS  CD2       106.10   110.58    -4.48  1.00e+00  2.00e+01   4.5*sigma
   A 101  LYS  CA
   A 101  LYS  C
   A 102  PRO  N         116.90   123.50    -6.60  1.50e+00  1.94e+01   4.4*sigma
   A 134  HIS  ND1
   A 134  HIS  CG
   A 134  HIS  CD2       106.10   110.44    -4.34  1.00e+00  1.88e+01   4.3*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.37    -4.27  1.00e+00  1.82e+01   4.3*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   110.29    -4.19  1.00e+00  1.76e+01   4.2*sigma
   A 104  VAL  CA
   A 104  VAL  CB
   A 104  VAL  CG1       110.40   117.46    -7.06  1.70e+00  1.73e+01   4.2*sigma
   A  99  LEU  N
   A  99  LEU  CA
   A  99  LEU  C         111.00   122.40   -11.40  2.80e+00  1.66e+01   4.1*sigma
   A 139  HIS  ND1
   A 139  HIS  CE1
   A 139  HIS  NE2       108.40   112.42    -4.02  1.00e+00  1.61e+01   4.0*sigma

  Min. delta:    0.002 (Z=  0.001)
  Max. delta:   11.480 (Z=  6.378)
  Mean delta:    2.259 (Z=  1.241)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  51  ILE  CA
   A  51  ILE  C
   A  52  PRO  N
   A  52  PRO  CA        180.00  -147.27   -32.73  5.00e+00  4.28e+01   6.5*sigma
   A 119  LEU  CA
   A 119  LEU  C
   A 120  GLU  N
   A 120  GLU  CA        180.00   147.80    32.20  5.00e+00  4.15e+01   6.4*sigma

  Min. delta:    0.002
  Max. delta:   44.674
  Mean delta:   10.015

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.568
  Mean delta:    0.104

                       ----------Planar groups----------                       

  atoms                 rms_deltas   delta_max    residual   deviation
   A  51  ILE  C
   A  52  PRO  N
   A  52  PRO  CA
   A  52  PRO  CD            0.137       0.236       29.84   4.7*sigma

  Min. delta:    0.000
  Max. delta:    0.137
  Mean delta:    0.016

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

                       ----------Angle outliers----------                      

   A  52  PRO  HA , Angle CB-CA-HA, observed: 121.258, delta from target: -12.258
   A  53  LEU  HG , Angle CD2-CG-HG, observed: 121.397, delta from target: -13.397

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.011   0.072   2241  Z= 0.607
    Angle     :  2.034  13.397   4077  Z= 0.909
    Chirality :  0.104   0.568    176
    Planarity :  0.012   0.137    326
    Dihedral  :  8.848  50.086    768
    Min Nonbonded Distance : 1.808
  
  Molprobity Statistics.
    All-atom Clashscore : 1.80
    Ramachandran Plot:
      Outliers :  4.38 %
      Allowed  : 11.68 %
      Favored  : 83.94 %
    Rotamer:
      Outliers :  1.61 %
      Allowed  :  0.00 %
      Favored  : 98.39 %
    Cbeta Deviations :  1.52 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.00 %
      Twisted Proline : 14.29 %
      Twisted General : 0.76 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -0.74 (0.71), residues: 137
    helix:  1.46 (0.58), residues: 57
    sheet:  0.06 (1.57), residues: 12
    loop : -2.48 (0.79), residues: 68
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.005   0.001   HIS A 139 
   PHE   0.038   0.008   PHE A  67 
   TYR   0.138   0.021   TYR A 105 
   ARG   0.053   0.008   ARG A  58 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.005   0.001   HIS A 139 
   PHE   0.026   0.007   PHE A  67 
   TYR   0.106   0.022   TYR A 105 
   ARG   0.015   0.003   ARG A  58 

                     ----------Asn/Gln/His flips----------                     

  No backwards Asn/Gln/His sidechains found.

=================================== Summary ===================================

  Ramachandran outliers =   6.57 %
                favored =  84.67 %
  Rotamer outliers      =   2.42 %
  C-beta deviations     =     1
  Clashscore            =   6.77
  RMS(bonds)            =   0.0114
  RMS(angles)           =   2.05
  MolProbity score      =   2.33

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py

============================== Collecting inputs ==============================

  Ramachandran outliers =   4.38 %
                favored =  83.94 %
  Rotamer outliers      =   1.61 %
  C-beta deviations     =     2
  Clashscore            =   1.80
  RMS(bonds)            =   0.0113
  RMS(angles)           =   2.03
  MolProbity score      =   1.77

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py
  Ramachandran outliers =   4.38 %
                favored =  86.86 %
  Rotamer outliers      =   0.00 %
  C-beta deviations     =     2
  Clashscore            =   4.06
  RMS(bonds)            =   0.0122
  RMS(angles)           =   1.91
  MolProbity score      =   1.81

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py
Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  


============================== Collecting inputs ==============================


End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  atoms                 ideal   model   delta   sigma   slack  residual   deviation
   A 135  HIS  CE1
   A 135  HIS  NE2         1.32     1.38    -0.06  1.00e-02  3.43e+01   5.9*sigma
   A  70  LEU  C
   A  71  ILE  N           1.33     1.39    -0.06  1.40e-02  1.75e+01   4.2*sigma

  Min. delta:    0.000 (Z=  0.002)
  Max. delta:    0.059 (Z=  5.857)
  Mean delta:    0.016 (Z=  0.883)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 110  ASP  CA
   A 110  ASP  CB
   A 110  ASP  CG        112.60   121.06    -8.46  1.00e+00  7.16e+01   8.5*sigma
   A  69  ALA  C
   A  69  ALA  CA
   A  69  ALA  CB        110.50   100.61     9.89  1.50e+00  4.35e+01   6.6*sigma
   A 116  ASP  CA
   A 116  ASP  C
   A 117  PRO  N         116.90   126.15    -9.25  1.50e+00  3.80e+01   6.2*sigma
   A  30  ILE  CA
   A  30  ILE  CB
   A  30  ILE  CG1       110.40   120.05    -9.65  1.70e+00  3.22e+01   5.7*sigma
   A 134  HIS  CB
   A 134  HIS  CG
   A 134  HIS  ND1       122.70   114.54     8.16  1.50e+00  2.96e+01   5.4*sigma
   A  45  PHE  CA
   A  45  PHE  CB
   A  45  PHE  CG        113.80   108.44     5.36  1.00e+00  2.87e+01   5.4*sigma
   A 135  HIS  ND1
   A 135  HIS  CE1
   A 135  HIS  NE2       108.40   113.52    -5.12  1.00e+00  2.62e+01   5.1*sigma
   A 113  LYS  N
   A 113  LYS  CA
   A 113  LYS  CB        110.50   118.98    -8.48  1.70e+00  2.49e+01   5.0*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   111.08    -4.98  1.00e+00  2.48e+01   5.0*sigma
   A 135  HIS  CD2
   A 135  HIS  NE2
   A 135  HIS  CE1       109.00   104.12     4.88  1.00e+00  2.39e+01   4.9*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.71    -4.61  1.00e+00  2.13e+01   4.6*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.66    -4.56  1.00e+00  2.08e+01   4.6*sigma
   A 135  HIS  CA
   A 135  HIS  CB
   A 135  HIS  CG        113.80   109.36     4.44  1.00e+00  1.97e+01   4.4*sigma
   A  51  ILE  CA
   A  51  ILE  C
   A  52  PRO  N         116.90   123.44    -6.54  1.50e+00  1.90e+01   4.4*sigma
   A 136  HIS  ND1
   A 136  HIS  CG
   A 136  HIS  CD2       106.10   110.34    -4.24  1.00e+00  1.80e+01   4.2*sigma
   A 134  HIS  ND1
   A 134  HIS  CG
   A 134  HIS  CD2       106.10   110.33    -4.23  1.00e+00  1.79e+01   4.2*sigma
   A 116  ASP  O
   A 116  ASP  C
   A 117  PRO  N         123.00   116.31     6.69  1.60e+00  1.75e+01   4.2*sigma
   A  15  PHE  N
   A  15  PHE  CA
   A  15  PHE  CB        110.50   117.49    -6.99  1.70e+00  1.69e+01   4.1*sigma
   A 118  ASP  CA
   A 118  ASP  CB
   A 118  ASP  CG        112.60   108.49     4.11  1.00e+00  1.69e+01   4.1*sigma

  Min. delta:    0.003 (Z=  0.001)
  Max. delta:   11.186 (Z=  8.460)
  Mean delta:    2.324 (Z=  1.313)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 127  ARG  CA
   A 127  ARG  C
   A 128  MET  N
   A 128  MET  CA        180.00   153.37    26.63  5.00e+00  2.84e+01   5.3*sigma
   A  21  ARG  CA
   A  21  ARG  C
   A  22  PRO  N
   A  22  PRO  CA        180.00   156.09    23.91  5.00e+00  2.29e+01   4.8*sigma

  Min. delta:    0.005
  Max. delta:   59.944
  Mean delta:   10.637

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.535
  Mean delta:    0.116

                       ----------Planar groups----------                       

  atoms                 rms_deltas   delta_max    residual   deviation
   A  45  PHE  CB
   A  45  PHE  CG
   A  45  PHE  CD1
   A  45  PHE  CD2
   A  45  PHE  CE1
   A  45  PHE  CE2
   A  45  PHE  CZ            0.053       0.083       49.37   4.2*sigma

  Min. delta:    0.000
  Max. delta:    0.073
  Mean delta:    0.013

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

                       ----------Angle outliers----------                      

   A   2  LEU  HG , Angle CB-CG-HG, observed: 96.831, delta from target: 12.169
   A 113  LYS  HA , Angle N-CA-HA, observed: 95.543, delta from target: 14.457

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.012   0.059   2241  Z= 0.629
    Angle     :  2.078  14.457   4077  Z= 0.950
    Chirality :  0.116   0.535    176
    Planarity :  0.011   0.073    326
    Dihedral  :  9.619  59.944    768
    Min Nonbonded Distance : 1.691
  
  Molprobity Statistics.
    All-atom Clashscore : 9.02
    Ramachandran Plot:
      Outliers :  3.65 %
      Allowed  :  7.30 %
      Favored  : 89.05 %
    Rotamer:
      Outliers :  0.00 %
      Allowed  :  4.03 %
      Favored  : 95.97 %
    Cbeta Deviations :  3.03 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.00 %
      Twisted Proline : 0.00 %
      Twisted General : 0.00 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -0.22 (0.71), residues: 137
    helix:  1.00 (0.62), residues: 66
    sheet: -1.20 (1.48), residues: 10
    loop : -1.24 (0.82), residues: 61
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.007   0.002   HIS A 134 
   PHE   0.124   0.030   PHE A  45 
   TYR   0.087   0.019   TYR A 111 
   ARG   0.033   0.012   ARG A 129 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.007   0.002   HIS A 134 
   PHE   0.083   0.026   PHE A  45 
   TYR   0.068   0.019   TYR A 111 
   ARG   0.018   0.007   ARG A 129 

                     ----------Asn/Gln/His flips----------                     

  No backwards Asn/Gln/His sidechains found.

=================================== Summary ===================================


End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000 (Z=  0.000)
  Max. delta:    0.051 (Z=  3.598)
  Mean delta:    0.016 (Z=  0.830)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 137  HIS  C
   A 138  HIS  N
   A 138  HIS  CA        121.70   138.27   -16.57  1.80e+00  8.48e+01   9.2*sigma
   A  51  ILE  CA
   A  51  ILE  C
   A  52  PRO  N         116.90   128.47   -11.57  1.50e+00  5.95e+01   7.7*sigma
   A 137  HIS  N
   A 137  HIS  CA
   A 137  HIS  CB        110.50   119.85    -9.35  1.70e+00  3.02e+01   5.5*sigma
   A  90  SER  C
   A  90  SER  CA
   A  90  SER  CB        110.10   100.00    10.10  1.90e+00  2.83e+01   5.3*sigma
   A 137  HIS  CA
   A 137  HIS  CB
   A 137  HIS  CG        113.80   119.01    -5.21  1.00e+00  2.71e+01   5.2*sigma
   A 137  HIS  O
   A 137  HIS  C
   A 138  HIS  N         123.00   115.07     7.93  1.60e+00  2.46e+01   5.0*sigma
   A 136  HIS  CA
   A 136  HIS  CB
   A 136  HIS  CG        113.80   118.75    -4.95  1.00e+00  2.45e+01   4.9*sigma
   A  85  LYS  CG
   A  85  LYS  CD
   A  85  LYS  CE        111.30   122.53   -11.23  2.30e+00  2.38e+01   4.9*sigma
   A  51  ILE  O
   A  51  ILE  C
   A  52  PRO  N         123.00   115.23     7.77  1.60e+00  2.36e+01   4.9*sigma
   A 111  TYR  O
   A 111  TYR  C
   A 112  VAL  N         123.00   115.34     7.66  1.60e+00  2.29e+01   4.8*sigma
   A 138  HIS  ND1
   A 138  HIS  CG
   A 138  HIS  CD2       106.10   110.86    -4.76  1.00e+00  2.26e+01   4.8*sigma
   A  63  LYS  CB
   A  63  LYS  CG
   A  63  LYS  CD        111.30   121.88   -10.58  2.30e+00  2.12e+01   4.6*sigma
   A  77  ILE  CA
   A  77  ILE  CB
   A  77  ILE  CG2       110.50   118.25    -7.75  1.70e+00  2.08e+01   4.6*sigma
   A  53  LEU  CA
   A  53  LEU  C
   A  54  PRO  N         116.90   123.62    -6.72  1.50e+00  2.01e+01   4.5*sigma
   A 135  HIS  C
   A 136  HIS  N
   A 136  HIS  CA        121.70   129.67    -7.97  1.80e+00  1.96e+01   4.4*sigma
   A  43  HIS  ND1
   A  43  HIS  CG
   A  43  HIS  CD2       106.10   110.51    -4.41  1.00e+00  1.95e+01   4.4*sigma
   A 139  HIS  CA
   A 139  HIS  CB
   A 139  HIS  CG        113.80   118.20    -4.40  1.00e+00  1.94e+01   4.4*sigma
   A  95  ASP  C
   A  96  GLY  N
   A  96  GLY  CA        121.70   129.57    -7.87  1.80e+00  1.91e+01   4.4*sigma
   A  57  VAL  C
   A  57  VAL  CA
   A  57  VAL  CB        111.40   103.10     8.30  1.90e+00  1.91e+01   4.4*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   110.37    -4.27  1.00e+00  1.82e+01   4.3*sigma
   A 137  HIS  CA
   A 137  HIS  C
   A 138  HIS  N         116.20   124.69    -8.49  2.00e+00  1.80e+01   4.2*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.33    -4.23  1.00e+00  1.79e+01   4.2*sigma
   A 112  VAL  CA
   A 112  VAL  CB
   A 112  VAL  CG1       110.40   117.57    -7.17  1.70e+00  1.78e+01   4.2*sigma
   A 138  HIS  CB
   A 138  HIS  CG
   A 138  HIS  ND1       122.70   116.50     6.20  1.50e+00  1.71e+01   4.1*sigma
   A 132  LEU  N
   A 132  LEU  CA
   A 132  LEU  C         111.00   122.56   -11.56  2.80e+00  1.70e+01   4.1*sigma
   A  14  VAL  CA
   A  14  VAL  CB
   A  14  VAL  CG1       110.40   117.41    -7.01  1.70e+00  1.70e+01   4.1*sigma
   A  42  GLY  C
   A  43  HIS  N
   A  43  HIS  CA        121.70   129.08    -7.38  1.80e+00  1.68e+01   4.1*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.14    -4.04  1.00e+00  1.63e+01   4.0*sigma
   A  15  PHE  CA
   A  15  PHE  CB
   A  15  PHE  CG        113.80   109.78     4.02  1.00e+00  1.61e+01   4.0*sigma

  Min. delta:    0.001 (Z=  0.000)
  Max. delta:   16.575 (Z=  9.208)
  Mean delta:    2.536 (Z=  1.393)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 126  VAL  CA
   A 126  VAL  C
   A 127  ARG  N
   A 127  ARG  CA        180.00   138.62    41.38  5.00e+00  6.85e+01   8.3*sigma
   A 131  ILE  CA
   A 131  ILE  C
   A 132  LEU  N
   A 132  LEU  CA        180.00   139.08    40.92  5.00e+00  6.70e+01   8.2*sigma
   A  53  LEU  CA
   A  53  LEU  C
   A  54  PRO  N
   A  54  PRO  CA        180.00   140.03    39.97  5.00e+00  6.39e+01   8.0*sigma
   A 135  HIS  CA
   A 135  HIS  C
   A 136  HIS  N
   A 136  HIS  CA        180.00   153.55    26.45  5.00e+00  2.80e+01   5.3*sigma
   A 134  HIS  CA
   A 134  HIS  C
   A 135  HIS  N
   A 135  HIS  CA        180.00   156.27    23.73  5.00e+00  2.25e+01   4.7*sigma
   A 136  HIS  CA
   A 136  HIS  C
   A 137  HIS  N
   A 137  HIS  CA        180.00   158.60    21.40  5.00e+00  1.83e+01   4.3*sigma
   A 137  HIS  CA
   A 137  HIS  C
   A 138  HIS  N
   A 138  HIS  CA          0.00    20.45   -20.45  5.00e+00  1.67e+01   4.1*sigma

  Min. delta:    0.022
  Max. delta:   61.604
  Mean delta:   10.899

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.453
  Mean delta:    0.123

                       ----------Planar groups----------                       

  atoms                 rms_deltas   delta_max    residual   deviation
   A  91  TYR  CB
   A  91  TYR  CG
   A  91  TYR  CD1
   A  91  TYR  CD2
   A  91  TYR  CE1
   A  91  TYR  CE2
   A  91  TYR  CZ
   A  91  TYR  OH            0.171       0.160      582.43   8.0*sigma
   A 111  TYR  CB
   A 111  TYR  CG
   A 111  TYR  CD1
   A 111  TYR  CD2
   A 111  TYR  CE1
   A 111  TYR  CE2
   A 111  TYR  CZ
   A 111  TYR  OH            0.100       0.135      201.72   6.8*sigma
   A  12  TYR  CB
   A  12  TYR  CG
   A  12  TYR  CD1
   A  12  TYR  CD2
   A  12  TYR  CE1
   A  12  TYR  CE2
   A  12  TYR  CZ
   A  12  TYR  OH            0.072       0.119      103.75   5.9*sigma
   A  15  PHE  CB
   A  15  PHE  CG
   A  15  PHE  CD1
   A  15  PHE  CD2
   A  15  PHE  CE1
   A  15  PHE  CE2
   A  15  PHE  CZ            0.057       0.085       56.59   4.2*sigma

  Min. delta:    0.000
  Max. delta:    0.171
  Mean delta:    0.021

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

                       ----------Angle outliers----------                      

   A  76  SER  HA , Angle N-CA-HA, observed: 97.639, delta from target: 12.361

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.011   0.051   2241  Z= 0.591
    Angle     :  2.233  16.575   4077  Z= 1.008
    Chirality :  0.123   0.453    176
    Planarity :  0.017   0.165    326
    Dihedral  :  9.921  61.604    768
    Min Nonbonded Distance : 1.672
  
  Molprobity Statistics.
    All-atom Clashscore : 7.67
    Ramachandran Plot:
      Outliers :  9.49 %
      Allowed  :  9.49 %
      Favored  : 81.02 %
    Rotamer:
      Outliers :  0.00 %
      Allowed  :  1.61 %
      Favored  : 98.39 %
    Cbeta Deviations :  4.55 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.76 %
      Twisted Proline : 14.29 %
      Twisted General : 1.53 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -1.66 (0.71), residues: 137
    helix:  0.92 (0.58), residues: 58
    sheet: -2.27 (1.83), residues: 10
    loop : -2.86 (0.77), residues: 69
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.008   0.001   HIS A 137 
   PHE   0.135   0.039   PHE A  15 
   TYR   0.381   0.050   TYR A  91 
   ARG   0.019   0.005   ARG A  58 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.008   0.001   HIS A 137 
   PHE   0.085   0.030   PHE A  15 
   TYR   0.308   0.051   TYR A  91 
   ARG   0.010   0.002   ARG A  21 

                     ----------Asn/Gln/His flips----------                     

  No backwards Asn/Gln/His sidechains found.

=================================== Summary ===================================


End of input processing

=============================== Model properties ==============================


End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================

  atoms                 ideal   model   delta   sigma   slack  residual   deviation
   A  78  ILE  CA
   A  78  ILE  C           1.52     1.41     0.12  2.10e-02  3.20e+01   5.7*sigma

  Min. delta:    0.000 (Z=  0.000)
  Max. delta:    0.119 (Z=  5.661)
  Mean delta:    0.017 (Z=  0.900)

                        ----------Bond angles----------                        


                        ----------Bond lengths----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000 (Z=  0.003)
  Max. delta:    0.047 (Z=  3.632)
  Mean delta:    0.016 (Z=  0.848)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  78  ILE  CA
   A  78  ILE  CB
   A  78  ILE  CG2       110.50   124.08   -13.58  1.70e+00  6.38e+01   8.0*sigma
   A  16  GLU  CB
   A  16  GLU  CG
   A  16  GLU  CD        112.60   125.47   -12.87  1.70e+00  5.73e+01   7.6*sigma
   A  78  ILE  N
   A  78  ILE  CA
   A  78  ILE  CB        111.50   122.24   -10.74  1.70e+00  3.99e+01   6.3*sigma
   A   1  MET  CA
   A   1  MET  C
   A   2  LEU  N         116.20   128.74   -12.54  2.00e+00  3.93e+01   6.3*sigma
   A 137  HIS  CA
   A 137  HIS  CB
   A 137  HIS  CG        113.80   120.01    -6.21  1.00e+00  3.86e+01   6.2*sigma
   A  78  ILE  CA
   A  78  ILE  CB
   A  78  ILE  CG1       110.40   100.21    10.19  1.70e+00  3.59e+01   6.0*sigma
   A 115  ALA  C
   A 115  ALA  CA
   A 115  ALA  CB        110.50   101.64     8.86  1.50e+00  3.49e+01   5.9*sigma
   A 134  HIS  O
   A 134  HIS  C
   A 135  HIS  N         123.00   113.89     9.11  1.60e+00  3.24e+01   5.7*sigma
   A  71  ILE  C
   A  71  ILE  CA
   A  71  ILE  CB        111.60   122.15   -10.55  2.00e+00  2.78e+01   5.3*sigma
   A  78  ILE  C
   A  78  ILE  CA
   A  78  ILE  CB        111.60   101.31    10.29  2.00e+00  2.65e+01   5.1*sigma
   A 139  HIS  CA
   A 139  HIS  CB
   A 139  HIS  CG        113.80   118.80    -5.00  1.00e+00  2.50e+01   5.0*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   110.92    -4.82  1.00e+00  2.33e+01   4.8*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.87    -4.77  1.00e+00  2.27e+01   4.8*sigma
   A 135  HIS  CA
   A 135  HIS  CB
   A 135  HIS  CG        113.80   118.41    -4.61  1.00e+00  2.13e+01   4.6*sigma
   A 136  HIS  ND1
   A 136  HIS  CG
   A 136  HIS  CD2       106.10   110.71    -4.61  1.00e+00  2.12e+01   4.6*sigma
   A  62  LEU  N
   A  62  LEU  CA
   A  62  LEU  CB        110.50   102.75     7.75  1.70e+00  2.08e+01   4.6*sigma
   A 138  HIS  ND1
   A 138  HIS  CG
   A 138  HIS  CD2       106.10   110.62    -4.52  1.00e+00  2.04e+01   4.5*sigma
   A  98  SER  C
   A  99  LEU  N
   A  99  LEU  CA        121.70   129.76    -8.06  1.80e+00  2.00e+01   4.5*sigma
   A 135  HIS  C
   A 135  HIS  CA
   A 135  HIS  CB        110.10   101.71     8.39  1.90e+00  1.95e+01   4.4*sigma
   A  21  ARG  CA
   A  21  ARG  C
   A  22  PRO  N         116.90   123.39    -6.49  1.50e+00  1.87e+01   4.3*sigma
   A 113  LYS  CA
   A 113  LYS  C
   A 114  PRO  N         116.90   123.32    -6.42  1.50e+00  1.83e+01   4.3*sigma
   A 138  HIS  C
   A 139  HIS  N
   A 139  HIS  CA        121.70   129.32    -7.62  1.80e+00  1.79e+01   4.2*sigma
   A  51  ILE  CA
   A  51  ILE  C
   A  52  PRO  N         116.90   123.17    -6.27  1.50e+00  1.75e+01   4.2*sigma
   A  71  ILE  CA
   A  71  ILE  C
   A  72  ASN  N         116.20   124.53    -8.33  2.00e+00  1.73e+01   4.2*sigma
   A  71  ILE  N
   A  71  ILE  CA
   A  71  ILE  CB        111.50   118.58    -7.08  1.70e+00  1.73e+01   4.2*sigma
   A  43  HIS  ND1
   A  43  HIS  CG
   A  43  HIS  CD2       106.10   110.25    -4.15  1.00e+00  1.72e+01   4.2*sigma
   A  78  ILE  CB
   A  78  ILE  CG1
   A  78  ILE  CD1       113.80   105.21     8.59  2.10e+00  1.67e+01   4.1*sigma
   A   1  MET  CA
   A   1  MET  C
   A   1  MET  O         120.80   113.90     6.90  1.70e+00  1.65e+01   4.1*sigma

  Min. delta:    0.003 (Z=  0.002)
  Max. delta:   13.581 (Z=  7.989)
  Mean delta:    2.425 (Z=  1.348)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 134  HIS  CA
   A 134  HIS  C
   A 135  HIS  N
   A 135  HIS  CA        180.00    68.10   111.90  5.00e+00  5.01e+02  22.4*sigma
   A 133  GLU  CA
   A 133  GLU  C
   A 134  HIS  N
   A 134  HIS  CA        180.00   133.74    46.26  5.00e+00  8.56e+01   9.3*sigma
   A 137  HIS  CA
   A 137  HIS  C
   A 138  HIS  N
   A 138  HIS  CA        180.00   144.21    35.79  5.00e+00  5.12e+01   7.2*sigma
   A  96  GLY  CA
   A  96  GLY  C
   A  97  SER  N
   A  97  SER  CA        180.00   156.91    23.09  5.00e+00  2.13e+01   4.6*sigma
   A 138  HIS  CA
   A 138  HIS  C
   A 139  HIS  N
   A 139  HIS  CA        180.00   158.75    21.25  5.00e+00  1.81e+01   4.3*sigma
   A 136  HIS  CA
   A 136  HIS  C
   A 137  HIS  N
   A 137  HIS  CA        180.00   159.94    20.06  5.00e+00  1.61e+01   4.0*sigma

  Min. delta:    0.011
  Max. delta:  111.905
  Mean delta:   12.393

                       ----------Chiral volumes----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  71  ILE  CA
   A  71  ILE  N
   A  71  ILE  C
   A  71  ILE  CB          2.43     1.61     0.82  2.00e-01  1.69e+01   4.1*sigma

  Min. delta:    0.000
  Max. delta:    0.823
  Mean delta:    0.120

                       ----------Planar groups----------                       

  atoms                 rms_deltas   delta_max    residual   deviation
   A  12  TYR  CB
   A  12  TYR  CG
   A  12  TYR  CD1
   A  12  TYR  CD2
   A  12  TYR  CE1
   A  12  TYR  CE2
   A  12  TYR  CZ
   A  12  TYR  OH            0.061       0.120       75.23   6.0*sigma
   A 135  HIS  CB
   A 135  HIS  CG
   A 135  HIS  ND1
   A 135  HIS  CD2
   A 135  HIS  CE1
   A 135  HIS  NE2           0.071       0.103       75.77   5.2*sigma
   A  15  PHE  CB
   A  15  PHE  CG
   A  15  PHE  CD1
   A  15  PHE  CD2
   A  15  PHE  CE1
   A  15  PHE  CE2
   A  15  PHE  CZ            0.054       0.082       50.89   4.1*sigma

  Min. delta:    0.000
  Max. delta:    0.071
  Mean delta:    0.014

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  47  ASP  CA
   A  47  ASP  CB
   A  47  ASP  CG        112.60   103.04     9.56  1.00e+00  9.14e+01   9.6*sigma
   A  51  ILE  CA
   A  51  ILE  C
   A  52  PRO  N         116.90   126.16    -9.26  1.50e+00  3.81e+01   6.2*sigma
   A  43  HIS  CB
   A  43  HIS  CG
   A  43  HIS  ND1       122.70   113.79     8.91  1.50e+00  3.52e+01   5.9*sigma
   A 116  ASP  CA
   A 116  ASP  C
   A 117  PRO  N         116.90   124.95    -8.05  1.50e+00  2.88e+01   5.4*sigma
   A  43  HIS  ND1
   A  43  HIS  CG
   A  43  HIS  CD2       106.10   111.21    -5.11  1.00e+00  2.61e+01   5.1*sigma
   A 118  ASP  CA
   A 118  ASP  CB
   A 118  ASP  CG        112.60   117.69    -5.09  1.00e+00  2.59e+01   5.1*sigma
   A 138  HIS  ND1
   A 138  HIS  CG
   A 138  HIS  CD2       106.10   110.78    -4.68  1.00e+00  2.19e+01   4.7*sigma
   A 115  ALA  N
   A 115  ALA  CA
   A 115  ALA  CB        110.40   117.37    -6.97  1.50e+00  2.16e+01   4.6*sigma
   A  53  LEU  CA
   A  53  LEU  C
   A  54  PRO  N         116.90   123.81    -6.91  1.50e+00  2.12e+01   4.6*sigma
   A  72  ASN  N
   A  72  ASN  CA
   A  72  ASN  CB        110.50   118.14    -7.64  1.70e+00  2.02e+01   4.5*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.57    -4.47  1.00e+00  2.00e+01   4.5*sigma
   A 101  LYS  CA
   A 101  LYS  C
   A 102  PRO  N         116.90   123.46    -6.56  1.50e+00  1.91e+01   4.4*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.40    -4.30  1.00e+00  1.85e+01   4.3*sigma
   A 134  HIS  ND1
   A 134  HIS  CG
   A 134  HIS  CD2       106.10   110.39    -4.29  1.00e+00  1.84e+01   4.3*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   110.38    -4.28  1.00e+00  1.84e+01   4.3*sigma
   A  21  ARG  CA
   A  21  ARG  C
   A  22  PRO  N         116.90   123.25    -6.35  1.50e+00  1.79e+01   4.2*sigma
   A  44  ASP  CA
   A  44  ASP  CB
   A  44  ASP  CG        112.60   108.39     4.21  1.00e+00  1.77e+01   4.2*sigma
   A 116  ASP  O
   A 116  ASP  C
   A 117  PRO  N         123.00   116.27     6.73  1.60e+00  1.77e+01   4.2*sigma
   A  72  ASN  CA
   A  72  ASN  CB
   A  72  ASN  CG        112.60   108.42     4.18  1.00e+00  1.75e+01   4.2*sigma
   A 136  HIS  ND1
   A 136  HIS  CG
   A 136  HIS  CD2       106.10   110.24    -4.14  1.00e+00  1.71e+01   4.1*sigma
   A 139  HIS  ND1
   A 139  HIS  CE1
   A 139  HIS  NE2       108.40   112.42    -4.02  1.00e+00  1.62e+01   4.0*sigma
   A  78  ILE  N
   A  78  ILE  CA
   A  78  ILE  CB        111.50   118.31    -6.81  1.70e+00  1.61e+01   4.0*sigma

  Min. delta:    0.001 (Z=  0.001)
  Max. delta:    9.560 (Z=  9.560)
  Mean delta:    2.277 (Z=  1.308)

                      ----------Dihedral angles----------                      

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 119  LEU  CA
   A 119  LEU  C
   A 120  GLU  N
   A 120  GLU  CA        180.00   149.99    30.01  5.00e+00  3.60e+01   6.0*sigma
   A 116  ASP  CA
   A 116  ASP  C
   A 117  PRO  N
   A 117  PRO  CA        180.00   157.87    22.13  5.00e+00  1.96e+01   4.4*sigma

  Min. delta:    0.009
  Max. delta:   60.458
  Mean delta:    9.936

                       ----------Chiral volumes----------                      

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

                       ----------Angle outliers----------                      

   A 134  HIS  HA , Angle C-CA-HA, observed: 96.583, delta from target: 12.417
   A  78  ILE  HA , Angle C-CA-HA, observed: 122.797, delta from target: -13.797
   A  78  ILE  HB , Angle CG1-CB-HB, observed: 126.000, delta from target: -17.000
   A  71  ILE  HA , Angle CB-CA-HA, observed: 88.973, delta from target: 20.027

============================ Molprobity validation ============================

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.606
  Mean delta:    0.123

                       ----------Planar groups----------                       

  atoms                 rms_deltas   delta_max    residual   deviation
   A  43  HIS  CB
   A  43  HIS  CG
   A  43  HIS  ND1
   A  43  HIS  CD2
   A  43  HIS  CE1
   A  43  HIS  NE2           0.130       0.180      252.49   9.0*sigma
   A  91  TYR  CB
   A  91  TYR  CG
   A  91  TYR  CD1
   A  91  TYR  CD2
   A  91  TYR  CE1
   A  91  TYR  CE2
   A  91  TYR  CZ
   A  91  TYR  OH            0.056       0.091       62.37   4.6*sigma

  Min. delta:    0.000
  Max. delta:    0.130
  Mean delta:    0.019

============================= Hydrogen validation =============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.012   0.119   2241  Z= 0.640
    Angle     :  2.154  20.027   4077  Z= 0.977
    Chirality :  0.120   0.823    176
    Planarity :  0.011   0.070    326
    Dihedral  : 10.540 111.905    768
    Min Nonbonded Distance : 1.522
  
  Molprobity Statistics.
    All-atom Clashscore : 13.98
    Ramachandran Plot:
      Outliers :  7.30 %
      Allowed  : 14.60 %
      Favored  : 78.10 %
    Rotamer:
      Outliers :  2.42 %
      Allowed  :  2.42 %
      Favored  : 95.16 %
    Cbeta Deviations :  2.27 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.00 %
      Twisted Proline : 0.00 %
      Twisted General : 2.29 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -1.69 (0.72), residues: 137
    helix:  1.19 (0.63), residues: 59
    sheet:  None (None), residues: 0
    loop : -3.22 (0.69), residues: 78
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.006   0.002   HIS A 137 
   PHE   0.143   0.028   PHE A  15 
   TYR   0.138   0.019   TYR A  12 
   ARG   0.030   0.008   ARG A  58 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.006   0.002   HIS A 137 
   PHE   0.082   0.022   PHE A  15 
   TYR   0.120   0.018   TYR A  12 
   ARG   0.019   0.004   ARG A  58 

                     ----------Asn/Gln/His flips----------                     

  No backwards Asn/Gln/His sidechains found.

=================================== Summary ===================================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

                       ----------Angle outliers----------                      

   A  78  ILE  HA , Angle CB-CA-HA, observed: 96.953, delta from target: 12.047

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.011   0.047   2241  Z= 0.603
    Angle     :  2.029  12.047   4077  Z= 0.941
    Chirality :  0.123   0.606    176
    Planarity :  0.015   0.123    326
    Dihedral  :  9.667  81.269    768
    Min Nonbonded Distance : 1.731
  
  Molprobity Statistics.
    All-atom Clashscore : 1.80
    Ramachandran Plot:
      Outliers :  2.92 %
      Allowed  :  7.30 %
      Favored  : 89.78 %
    Rotamer:
      Outliers :  0.00 %
      Allowed  :  1.61 %
      Favored  : 98.39 %
    Cbeta Deviations :  3.79 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.00 %
      Twisted Proline : 0.00 %
      Twisted General : 0.76 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole:  0.42 (0.69), residues: 137
    helix:  1.86 (0.63), residues: 59
    sheet:  None (None), residues: 0
    loop : -1.03 (0.68), residues: 78
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.013   0.003   HIS A  43 
   PHE   0.095   0.019   PHE A  45 
   TYR   0.151   0.039   TYR A 111 
   ARG   0.069   0.015   ARG A  21 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.013   0.003   HIS A  43 
   PHE   0.063   0.018   PHE A  45 
   TYR   0.091   0.035   TYR A  91 
   ARG   0.041   0.007   ARG A  21 

                     ----------Asn/Gln/His flips----------                     

  No backwards Asn/Gln/His sidechains found.

=================================== Summary ===================================

Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  

        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'PTRANS': 7, 'TRANS': 131}
  Ramachandran outliers =   3.65 %
                favored =  89.05 %
  Rotamer outliers      =   0.00 %
  C-beta deviations     =     4
  Clashscore            =   9.02
  RMS(bonds)            =   0.0115
  RMS(angles)           =   2.08
  MolProbity score      =   2.06

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py

End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  atoms                 ideal   model   delta   sigma   slack  residual   deviation
   A  83  THR  C
   A  84  GLU  N           1.33     1.43    -0.10  1.40e-02  5.27e+01   7.3*sigma
   A  84  GLU  C
   A  85  LYS  N           1.33     1.42    -0.09  1.40e-02  4.17e+01   6.5*sigma
   A  84  GLU  N
   A  84  GLU  CA          1.46     1.57    -0.12  1.90e-02  3.71e+01   6.1*sigma
   A  95  ASP  C
   A  96  GLY  N           1.33     1.39    -0.06  1.40e-02  1.78e+01   4.2*sigma

  Min. delta:    0.000 (Z=  0.000)
  Max. delta:    0.116 (Z=  7.260)
  Mean delta:    0.018 (Z=  0.961)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  95  ASP  CA
   A  95  ASP  CB
   A  95  ASP  CG        112.60   129.45   -16.85  1.00e+00  2.84e+02  16.9*sigma
   A  95  ASP  C
   A  95  ASP  CA
   A  95  ASP  CB        110.10   126.88   -16.78  1.90e+00  7.80e+01   8.8*sigma
   A  51  ILE  CA
   A  51  ILE  C
   A  52  PRO  N         116.90   128.43   -11.53  1.50e+00  5.91e+01   7.7*sigma
   A  83  THR  C
   A  84  GLU  N
   A  84  GLU  CA        121.70   134.83   -13.13  1.80e+00  5.32e+01   7.3*sigma
   A  83  THR  N
   A  83  THR  CA
   A  83  THR  CB        111.50    99.94    11.56  1.70e+00  4.62e+01   6.8*sigma
   A  83  THR  C
   A  83  THR  CA
   A  83  THR  CB        109.10   123.28   -14.18  2.20e+00  4.15e+01   6.4*sigma
   A  29  ASP  CA
   A  29  ASP  CB
   A  29  ASP  CG        112.60   118.97    -6.37  1.00e+00  4.05e+01   6.4*sigma
   A  83  THR  CA
   A  83  THR  CB
   A  83  THR  OG1       109.60   118.94    -9.34  1.50e+00  3.88e+01   6.2*sigma
   A  94  GLY  C
   A  95  ASP  N
   A  95  ASP  CA        121.70   132.88   -11.18  1.80e+00  3.86e+01   6.2*sigma
   A  95  ASP  O
   A  95  ASP  C
   A  96  GLY  N         123.00   113.11     9.89  1.60e+00  3.82e+01   6.2*sigma
   A  95  ASP  CA
   A  95  ASP  C
   A  96  GLY  N         116.20   128.55   -12.35  2.00e+00  3.82e+01   6.2*sigma
   A  97  SER  N
   A  97  SER  CA
   A  97  SER  CB        110.50   120.34    -9.84  1.70e+00  3.35e+01   5.8*sigma
   A  84  GLU  C
   A  85  LYS  N
   A  85  LYS  CA        121.70   131.17    -9.47  1.80e+00  2.77e+01   5.3*sigma
   A  96  GLY  C
   A  97  SER  N
   A  97  SER  CA        121.70   129.72    -8.02  1.80e+00  1.98e+01   4.5*sigma
   A  83  THR  CA
   A  83  THR  C
   A  83  THR  O         120.80   113.34     7.46  1.70e+00  1.93e+01   4.4*sigma
   A  98  SER  N
   A  98  SER  CA
   A  98  SER  CB        110.50   117.82    -7.32  1.70e+00  1.86e+01   4.3*sigma
   A  51  ILE  O
   A  51  ILE  C
   A  52  PRO  N         123.00   116.30     6.70  1.60e+00  1.75e+01   4.2*sigma
   A 103  ASP  CA
   A 103  ASP  CB
   A 103  ASP  CG        112.60   116.72    -4.12  1.00e+00  1.70e+01   4.1*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.22    -4.12  1.00e+00  1.70e+01   4.1*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.19    -4.09  1.00e+00  1.68e+01   4.1*sigma
   A  81  TYR  C
   A  82  THR  N
   A  82  THR  CA        121.70   129.04    -7.34  1.80e+00  1.66e+01   4.1*sigma
   A  95  ASP  N
   A  95  ASP  CA
   A  95  ASP  CB        110.50   103.62     6.88  1.70e+00  1.64e+01   4.0*sigma
   A 134  HIS  ND1
   A 134  HIS  CG
   A 134  HIS  CD2       106.10   110.12    -4.02  1.00e+00  1.62e+01   4.0*sigma

  Min. delta:    0.003 (Z=  0.001)
  Max. delta:   16.851 (Z= 16.851)
  Mean delta:    2.445 (Z=  1.397)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  75  GLU  CA
   A  75  GLU  C
   A  76  SER  N
   A  76  SER  CA        180.00   136.03    43.97  5.00e+00  7.73e+01   8.8*sigma
   A  83  THR  CA
   A  83  THR  C
   A  84  GLU  N
   A  84  GLU  CA        180.00   138.94    41.06  5.00e+00  6.74e+01   8.2*sigma
   A 118  ASP  CA
   A 118  ASP  C
   A 119  LEU  N
   A 119  LEU  CA        180.00   151.78    28.22  5.00e+00  3.19e+01   5.6*sigma
   A 115  ALA  CA
   A 115  ALA  C
   A 116  ASP  N
   A 116  ASP  CA        180.00   156.60    23.40  5.00e+00  2.19e+01   4.7*sigma
   A 132  LEU  CA
   A 132  LEU  C
   A 133  GLU  N
   A 133  GLU  CA        180.00   158.34    21.66  5.00e+00  1.88e+01   4.3*sigma
   A  84  GLU  CA
   A  84  GLU  C
   A  85  LYS  N
   A  85  LYS  CA        180.00  -158.50   -21.50  5.00e+00  1.85e+01   4.3*sigma
   A  82  THR  CA
   A  82  THR  C
   A  83  THR  N
   A  83  THR  CA        180.00   159.68    20.32  5.00e+00  1.65e+01   4.1*sigma

  Min. delta:    0.024
  Max. delta:   78.027
  Mean delta:   12.458

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.452
  Mean delta:    0.106

                       ----------Planar groups----------                       

  atoms                 rms_deltas   delta_max    residual   deviation
   A  81  TYR  CB
   A  81  TYR  CG
   A  81  TYR  CD1
   A  81  TYR  CD2
   A  81  TYR  CE1
   A  81  TYR  CE2
   A  81  TYR  CZ
   A  81  TYR  OH            0.054       0.104       59.33   5.2*sigma

  Min. delta:    0.000
  Max. delta:    0.114
  Mean delta:    0.016

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

                       ----------Angle outliers----------                      

   A  95  ASP  HA , Angle N-CA-HA, observed: 122.150, delta from target: -12.150
   A  84  GLU  HA , Angle N-CA-HA, observed: 97.558, delta from target: 12.442
   A  95  ASP  HA , Angle C-CA-HA, observed: 95.063, delta from target: 13.937
   A  83  THR  HA , Angle N-CA-HA, observed: 124.143, delta from target: -14.143
   A  97  SER  HA , Angle N-CA-HA, observed: 88.556, delta from target: 21.444

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.013   0.116   2241  Z= 0.684
    Angle     :  2.153  21.444   4077  Z= 1.000
    Chirality :  0.106   0.452    176
    Planarity :  0.011   0.088    326
    Dihedral  : 11.137  78.027    768
    Min Nonbonded Distance : 1.607
  
  Molprobity Statistics.
    All-atom Clashscore : 4.06
    Ramachandran Plot:
      Outliers :  4.38 %
      Allowed  : 10.22 %
      Favored  : 85.40 %
    Rotamer:
      Outliers :  0.00 %
      Allowed  :  1.61 %
      Favored  : 98.39 %
    Cbeta Deviations :  3.03 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.00 %
      Twisted Proline : 0.00 %
      Twisted General : 1.53 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -1.04 (0.68), residues: 137
    helix:  1.71 (0.58), residues: 59
    sheet:  None (None), residues: 0
    loop : -2.84 (0.65), residues: 78
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.004   0.001   HIS A 138 
   PHE   0.015   0.004   PHE A  45 
   TYR   0.114   0.018   TYR A  81 
   ARG   0.091   0.012   ARG A  21 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.004   0.001   HIS A 138 
   PHE   0.013   0.005   PHE A  67 
   TYR   0.104   0.020   TYR A  81 
   ARG   0.004   0.001   ARG A  58 

                     ----------Asn/Gln/His flips----------                     

   A  72  ASN

=================================== Summary ===================================


End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  atoms                 ideal   model   delta   sigma   slack  residual   deviation
   A  30  ILE  N
   A  30  ILE  CA          1.46     1.38     0.08  1.90e-02  1.76e+01   4.2*sigma

  Min. delta:    0.000 (Z=  0.000)
  Max. delta:    0.080 (Z=  4.195)
  Mean delta:    0.016 (Z=  0.843)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  30  ILE  N
   A  30  ILE  CA
   A  30  ILE  CB        111.50    95.17    16.33  1.70e+00  9.23e+01   9.6*sigma
   A   4  ILE  CA
   A   4  ILE  CB
   A   4  ILE  CG1       110.40   121.87   -11.47  1.70e+00  4.55e+01   6.7*sigma
   A  30  ILE  CA
   A  30  ILE  CB
   A  30  ILE  CG1       110.40   120.72   -10.32  1.70e+00  3.69e+01   6.1*sigma
   A 113  LYS  CA
   A 113  LYS  C
   A 114  PRO  N         116.90   124.56    -7.66  1.50e+00  2.61e+01   5.1*sigma
   A 116  ASP  CA
   A 116  ASP  CB
   A 116  ASP  CG        112.60   117.56    -4.96  1.00e+00  2.46e+01   5.0*sigma
   A   2  LEU  CD1
   A   2  LEU  CG
   A   2  LEU  CD2       110.80   121.23   -10.43  2.20e+00  2.25e+01   4.7*sigma
   A  76  SER  N
   A  76  SER  CA
   A  76  SER  CB        110.50   118.56    -8.06  1.70e+00  2.25e+01   4.7*sigma
   A   3  LEU  N
   A   3  LEU  CA
   A   3  LEU  CB        110.50   102.62     7.88  1.70e+00  2.15e+01   4.6*sigma
   A  29  ASP  CA
   A  29  ASP  C
   A  29  ASP  O         120.80   128.39    -7.59  1.70e+00  1.99e+01   4.5*sigma
   A 136  HIS  ND1
   A 136  HIS  CG
   A 136  HIS  CD2       106.10   110.51    -4.41  1.00e+00  1.95e+01   4.4*sigma
   A  75  GLU  C
   A  76  SER  N
   A  76  SER  CA        121.70   129.51    -7.81  1.80e+00  1.88e+01   4.3*sigma
   A   2  LEU  C
   A   3  LEU  N
   A   3  LEU  CA        121.70   129.42    -7.72  1.80e+00  1.84e+01   4.3*sigma
   A  53  LEU  CA
   A  53  LEU  C
   A  54  PRO  N         116.90   123.30    -6.40  1.50e+00  1.82e+01   4.3*sigma
   A 134  HIS  ND1
   A 134  HIS  CG
   A 134  HIS  CD2       106.10   110.35    -4.25  1.00e+00  1.81e+01   4.3*sigma
   A  42  GLY  C
   A  43  HIS  N
   A  43  HIS  CA        121.70   129.31    -7.61  1.80e+00  1.79e+01   4.2*sigma
   A  29  ASP  C
   A  29  ASP  CA
   A  29  ASP  CB        110.10   102.10     8.00  1.90e+00  1.77e+01   4.2*sigma
   A 101  LYS  CA
   A 101  LYS  C
   A 102  PRO  N         116.90   123.18    -6.28  1.50e+00  1.75e+01   4.2*sigma
   A  21  ARG  CA
   A  21  ARG  C
   A  22  PRO  N         116.90   123.17    -6.27  1.50e+00  1.75e+01   4.2*sigma
   A 138  HIS  ND1
   A 138  HIS  CG
   A 138  HIS  CD2       106.10   110.27    -4.17  1.00e+00  1.74e+01   4.2*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   110.27    -4.17  1.00e+00  1.74e+01   4.2*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.23    -4.13  1.00e+00  1.71e+01   4.1*sigma
   A  77  ILE  CA
   A  77  ILE  CB
   A  77  ILE  CG1       110.40   117.32    -6.92  1.70e+00  1.66e+01   4.1*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.14    -4.04  1.00e+00  1.63e+01   4.0*sigma

  Min. delta:    0.001 (Z=  0.000)
  Max. delta:   16.330 (Z=  9.606)
  Mean delta:    2.361 (Z=  1.300)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 121  GLY  CA
   A 121  GLY  C
   A 122  ILE  N
   A 122  ILE  CA        180.00   152.54    27.46  5.00e+00  3.02e+01   5.5*sigma
   A   4  ILE  CA
   A   4  ILE  C
   A   5  THR  N
   A   5  THR  CA        180.00   154.75    25.25  5.00e+00  2.55e+01   5.1*sigma
   A 138  HIS  CA
   A 138  HIS  C
   A 139  HIS  N
   A 139  HIS  CA        180.00   155.50    24.50  5.00e+00  2.40e+01   4.9*sigma
   A 122  ILE  CA
   A 122  ILE  C
   A 123  GLU  N
   A 123  GLU  CA        180.00   156.34    23.66  5.00e+00  2.24e+01   4.7*sigma
   A 115  ALA  CA
   A 115  ALA  C
   A 116  ASP  N
   A 116  ASP  CA        180.00   157.25    22.75  5.00e+00  2.07e+01   4.5*sigma
   A  51  ILE  CA
   A  51  ILE  C
   A  52  PRO  N
   A  52  PRO  CA        180.00   159.40    20.60  5.00e+00  1.70e+01   4.1*sigma

  Min. delta:    0.029
  Max. delta:   80.166
  Mean delta:   10.812

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.610
  Mean delta:    0.103

                       ----------Planar groups----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.109
  Mean delta:    0.015

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

                       ----------Angle outliers----------                      

   A  76  SER  HA , Angle N-CA-HA, observed: 97.847, delta from target: 12.153
   A  62  LEU  HG , Angle CD1-CG-HG, observed: 121.883, delta from target: -13.883
   A   2  LEU  HG , Angle CD1-CG-HG, observed: 94.073, delta from target: 13.927

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.011   0.080   2241  Z= 0.600
    Angle     :  2.113  16.330   4077  Z= 0.948
    Chirality :  0.103   0.610    176
    Planarity :  0.012   0.109    326
    Dihedral  : 10.229  80.166    768
    Min Nonbonded Distance : 1.482
  
  Molprobity Statistics.
    All-atom Clashscore : 9.47
    Ramachandran Plot:
      Outliers :  4.38 %
      Allowed  : 10.95 %
      Favored  : 84.67 %
    Rotamer:
      Outliers :  1.61 %
      Allowed  :  0.81 %
      Favored  : 97.58 %
    Cbeta Deviations :  3.03 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.00 %
      Twisted Proline : 0.00 %
      Twisted General : 0.00 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -1.21 (0.69), residues: 137
    helix:  0.77 (0.65), residues: 62
    sheet:  None (None), residues: 0
    loop : -2.32 (0.67), residues: 75
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.003   0.001   HIS A 139 
   PHE   0.070   0.020   PHE A  45 
   TYR   0.121   0.024   TYR A  68 
   ARG   0.024   0.007   ARG A  58 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.003   0.001   HIS A 139 
   PHE   0.049   0.018   PHE A  45 
   TYR   0.091   0.023   TYR A  68 
   ARG   0.014   0.004   ARG A  21 

                     ----------Asn/Gln/His flips----------                     

  No backwards Asn/Gln/His sidechains found.

=================================== Summary ===================================

  Ramachandran outliers =   7.30 %
                favored =  78.10 %
  Rotamer outliers      =   2.42 %
  C-beta deviations     =     3
  Clashscore            =  13.98
  RMS(bonds)            =   0.0122
  RMS(angles)           =   2.15
  MolProbity score      =   2.70

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'PTRANS': 7, 'TRANS': 131}
  Ramachandran outliers =   9.49 %
                favored =  81.02 %
  Rotamer outliers      =   0.00 %
  C-beta deviations     =     6
  Clashscore            =   7.67
  RMS(bonds)            =   0.0111
  RMS(angles)           =   2.23
  MolProbity score      =   2.14

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py
  Ramachandran outliers =   2.92 %
                favored =  89.78 %
  Rotamer outliers      =   0.00 %
  C-beta deviations     =     5
  Clashscore            =   1.80
  RMS(bonds)            =   0.0113
  RMS(angles)           =   2.03
  MolProbity score      =   1.49

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py

  Symmetric amino acids flipped
    Residue "A GLU    8": "OE1" <-> "OE2"
    Residue "A GLU   16": "OE1" <-> "OE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   24": "OE1" <-> "OE2"
    Residue "A ASP   36": "OD1" <-> "OD2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A PHE   67": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ASP   74": "OD1" <-> "OD2"
    Residue "A GLU   75": "OE1" <-> "OE2"
    Residue "A TYR   81": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR   89": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ASP   95": "OD1" <-> "OD2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ASP  118": "OD1" <-> "OD2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU  133": "OE1" <-> "OE2"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""

End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000 (Z=  0.001)
  Max. delta:    0.055 (Z=  3.939)
  Mean delta:    0.016 (Z=  0.822)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 136  HIS  C
   A 137  HIS  N
   A 137  HIS  CA        121.70   138.74   -17.04  1.80e+00  8.96e+01   9.5*sigma
   A 134  HIS  C
   A 135  HIS  N
   A 135  HIS  CA        121.70   137.96   -16.26  1.80e+00  8.16e+01   9.0*sigma
   A  51  ILE  CA
   A  51  ILE  C
   A  52  PRO  N         116.90   125.71    -8.81  1.50e+00  3.45e+01   5.9*sigma
   A 134  HIS  N
   A 134  HIS  CA
   A 134  HIS  CB        110.50   119.72    -9.22  1.70e+00  2.94e+01   5.4*sigma
   A 136  HIS  O
   A 136  HIS  C
   A 137  HIS  N         123.00   114.57     8.43  1.60e+00  2.78e+01   5.3*sigma
   A 136  HIS  CA
   A 136  HIS  CB
   A 136  HIS  CG        113.80   118.99    -5.19  1.00e+00  2.69e+01   5.2*sigma
   A 134  HIS  CA
   A 134  HIS  CB
   A 134  HIS  CG        113.80   118.99    -5.19  1.00e+00  2.69e+01   5.2*sigma
   A 137  HIS  CA
   A 137  HIS  CB
   A 137  HIS  CG        113.80   118.62    -4.82  1.00e+00  2.32e+01   4.8*sigma
   A 135  HIS  N
   A 135  HIS  CA
   A 135  HIS  CB        110.50   118.56    -8.06  1.70e+00  2.25e+01   4.7*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   110.76    -4.66  1.00e+00  2.17e+01   4.7*sigma
   A  94  GLY  C
   A  95  ASP  N
   A  95  ASP  CA        121.70   130.05    -8.35  1.80e+00  2.15e+01   4.6*sigma
   A 134  HIS  O
   A 134  HIS  C
   A 135  HIS  N         123.00   115.66     7.34  1.60e+00  2.10e+01   4.6*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.66    -4.56  1.00e+00  2.08e+01   4.6*sigma
   A 136  HIS  CA
   A 136  HIS  C
   A 137  HIS  N         116.20   125.28    -9.08  2.00e+00  2.06e+01   4.5*sigma
   A 137  HIS  N
   A 137  HIS  CA
   A 137  HIS  CB        110.50   118.13    -7.63  1.70e+00  2.01e+01   4.5*sigma
   A  52  PRO  N
   A  52  PRO  CD
   A  52  PRO  CG        103.20   109.88    -6.68  1.50e+00  1.98e+01   4.5*sigma
   A 134  HIS  ND1
   A 134  HIS  CG
   A 134  HIS  CD2       106.10   110.54    -4.44  1.00e+00  1.97e+01   4.4*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.51    -4.41  1.00e+00  1.94e+01   4.4*sigma
   A 138  HIS  ND1
   A 138  HIS  CG
   A 138  HIS  CD2       106.10   110.49    -4.39  1.00e+00  1.92e+01   4.4*sigma
   A  32  GLU  CB
   A  32  GLU  CG
   A  32  GLU  CD        112.60   119.88    -7.28  1.70e+00  1.83e+01   4.3*sigma
   A  43  HIS  ND1
   A  43  HIS  CG
   A  43  HIS  CD2       106.10   110.36    -4.26  1.00e+00  1.81e+01   4.3*sigma
   A 117  PRO  CA
   A 117  PRO  N
   A 117  PRO  CD        112.00   106.10     5.90  1.40e+00  1.78e+01   4.2*sigma
   A 136  HIS  ND1
   A 136  HIS  CG
   A 136  HIS  CD2       106.10   110.20    -4.10  1.00e+00  1.68e+01   4.1*sigma
   A 113  LYS  CA
   A 113  LYS  C
   A 114  PRO  N         116.90   123.05    -6.15  1.50e+00  1.68e+01   4.1*sigma

  Min. delta:    0.005 (Z=  0.001)
  Max. delta:   17.039 (Z=  9.466)
  Mean delta:    2.430 (Z=  1.356)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 116  ASP  CA
   A 116  ASP  C
   A 117  PRO  N
   A 117  PRO  CA        180.00   130.08    49.92  5.00e+00  9.97e+01  10.0*sigma
   A 117  PRO  CA
   A 117  PRO  C
   A 118  ASP  N
   A 118  ASP  CA        180.00   150.73    29.27  5.00e+00  3.43e+01   5.9*sigma
   A 114  PRO  CA
   A 114  PRO  C
   A 115  ALA  N
   A 115  ALA  CA        180.00   154.27    25.73  5.00e+00  2.65e+01   5.1*sigma
   A  83  THR  CA
   A  83  THR  C
   A  84  GLU  N
   A  84  GLU  CA        180.00   158.47    21.53  5.00e+00  1.85e+01   4.3*sigma

  Min. delta:    0.007
  Max. delta:   62.188
  Mean delta:   11.029

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.001
  Max. delta:    0.494
  Mean delta:    0.117

                       ----------Planar groups----------                       

  atoms                 rms_deltas   delta_max    residual   deviation
   A 135  HIS  CB
   A 135  HIS  CG
   A 135  HIS  ND1
   A 135  HIS  CD2
   A 135  HIS  CE1
   A 135  HIS  NE2           0.071       0.095       75.30   4.8*sigma
   A 111  TYR  CB
   A 111  TYR  CG
   A 111  TYR  CD1
   A 111  TYR  CD2
   A 111  TYR  CE1
   A 111  TYR  CE2
   A 111  TYR  CZ
   A 111  TYR  OH            0.090       0.094      160.76   4.7*sigma
   A  15  PHE  CB
   A  15  PHE  CG
   A  15  PHE  CD1
   A  15  PHE  CD2
   A  15  PHE  CE1
   A  15  PHE  CE2
   A  15  PHE  CZ            0.063       0.094       70.42   4.7*sigma
   A  68  TYR  CB
   A  68  TYR  CG
   A  68  TYR  CD1
   A  68  TYR  CD2
   A  68  TYR  CE1
   A  68  TYR  CE2
   A  68  TYR  CZ
   A  68  TYR  OH            0.057       0.092       65.48   4.6*sigma

  Min. delta:    0.000
  Max. delta:    0.179
  Mean delta:    0.020

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.011   0.055   2241  Z= 0.585
    Angle     :  2.128  17.039   4077  Z= 0.974
    Chirality :  0.117   0.494    176
    Planarity :  0.016   0.179    326
    Dihedral  : 10.559  63.293    768
    Min Nonbonded Distance : 1.725
  
  Molprobity Statistics.
    All-atom Clashscore : 4.51
    Ramachandran Plot:
      Outliers :  7.30 %
      Allowed  :  9.49 %
      Favored  : 83.21 %
    Rotamer:
      Outliers :  0.00 %
      Allowed  :  2.42 %
      Favored  : 97.58 %
    Cbeta Deviations :  1.52 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 1.53 %
      Twisted Proline : 14.29 %
      Twisted General : 0.00 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -1.59 (0.76), residues: 137
    helix:  1.06 (0.63), residues: 65
    sheet:  None (None), residues: 0
    loop : -3.31 (0.78), residues: 72
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.006   0.002   HIS A 139 
   PHE   0.173   0.030   PHE A  15 
   TYR   0.232   0.031   TYR A 111 
   ARG   0.017   0.006   ARG A 129 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.006   0.002   HIS A 139 
   PHE   0.094   0.025   PHE A  15 
   TYR   0.171   0.032   TYR A 111 
   ARG   0.008   0.002   ARG A 129 

                     ----------Asn/Gln/His flips----------                     

  No backwards Asn/Gln/His sidechains found.

=================================== Summary ===================================

  Ramachandran outliers =   4.38 %
                favored =  84.67 %
  Rotamer outliers      =   1.61 %
  C-beta deviations     =     4
  Clashscore            =   9.47
  RMS(bonds)            =   0.0114
  RMS(angles)           =   2.11
  MolProbity score      =   2.32

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py
  Ramachandran outliers =   4.38 %
                favored =  85.40 %
  Rotamer outliers      =   0.00 %
  C-beta deviations     =     4
  Clashscore            =   4.06
  RMS(bonds)            =   0.0128
  RMS(angles)           =   2.15
  MolProbity score      =   1.84

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py

============================== Collecting inputs ==============================


End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000 (Z=  0.000)
  Max. delta:    0.055 (Z=  3.403)
  Mean delta:    0.016 (Z=  0.861)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  30  ILE  CA
   A  30  ILE  CB
   A  30  ILE  CG1       110.40   119.60    -9.20  1.70e+00  2.93e+01   5.4*sigma
   A  44  ASP  CA
   A  44  ASP  CB
   A  44  ASP  CG        112.60   107.19     5.41  1.00e+00  2.92e+01   5.4*sigma
   A  42  GLY  C
   A  43  HIS  N
   A  43  HIS  CA        121.70   130.70    -9.00  1.80e+00  2.50e+01   5.0*sigma
   A  43  HIS  ND1
   A  43  HIS  CG
   A  43  HIS  CD2       106.10   110.92    -4.82  1.00e+00  2.32e+01   4.8*sigma
   A  90  SER  N
   A  90  SER  CA
   A  90  SER  CB        110.50   118.47    -7.97  1.70e+00  2.20e+01   4.7*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.63    -4.53  1.00e+00  2.05e+01   4.5*sigma
   A 113  LYS  CA
   A 113  LYS  C
   A 114  PRO  N         116.90   123.64    -6.74  1.50e+00  2.02e+01   4.5*sigma
   A  75  GLU  C
   A  76  SER  N
   A  76  SER  CA        121.70   129.73    -8.03  1.80e+00  1.99e+01   4.5*sigma
   A  50  TYR  C
   A  51  ILE  N
   A  51  ILE  CA        121.70   129.70    -8.00  1.80e+00  1.98e+01   4.4*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   110.53    -4.43  1.00e+00  1.96e+01   4.4*sigma
   A 101  LYS  CA
   A 101  LYS  C
   A 102  PRO  N         116.90   123.43    -6.53  1.50e+00  1.89e+01   4.4*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.41    -4.31  1.00e+00  1.86e+01   4.3*sigma
   A 136  HIS  ND1
   A 136  HIS  CG
   A 136  HIS  CD2       106.10   110.41    -4.31  1.00e+00  1.86e+01   4.3*sigma
   A  61  LEU  CD1
   A  61  LEU  CG
   A  61  LEU  CD2       110.80   101.49     9.31  2.20e+00  1.79e+01   4.2*sigma
   A  46  SER  CA
   A  46  SER  CB
   A  46  SER  OG        111.10   119.46    -8.36  2.00e+00  1.75e+01   4.2*sigma
   A  88  ASP  C
   A  89  TYR  N
   A  89  TYR  CA        121.70   129.20    -7.50  1.80e+00  1.74e+01   4.2*sigma
   A 134  HIS  ND1
   A 134  HIS  CG
   A 134  HIS  CD2       106.10   110.15    -4.05  1.00e+00  1.64e+01   4.0*sigma
   A 138  HIS  ND1
   A 138  HIS  CG
   A 138  HIS  CD2       106.10   110.14    -4.04  1.00e+00  1.63e+01   4.0*sigma

  Min. delta:    0.001 (Z=  0.000)
  Max. delta:   10.506 (Z=  5.414)
  Mean delta:    2.206 (Z=  1.227)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 100  GLN  CA
   A 100  GLN  C
   A 101  LYS  N
   A 101  LYS  CA        180.00   154.05    25.95  5.00e+00  2.69e+01   5.2*sigma
   A  51  ILE  CA
   A  51  ILE  C
   A  52  PRO  N
   A  52  PRO  CA        180.00   159.73    20.27  5.00e+00  1.64e+01   4.1*sigma
   A 116  ASP  CA
   A 116  ASP  C
   A 117  PRO  N
   A 117  PRO  CA        180.00   159.91    20.09  5.00e+00  1.61e+01   4.0*sigma

  Min. delta:    0.055
  Max. delta:   61.520
  Mean delta:   10.246

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.277
  Mean delta:    0.091

                       ----------Planar groups----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.068
  Mean delta:    0.014

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.012   0.055   2241  Z= 0.613
    Angle     :  1.972  11.044   4077  Z= 0.892
    Chirality :  0.091   0.277    176
    Planarity :  0.010   0.060    326
    Dihedral  :  9.084  61.520    768
    Min Nonbonded Distance : 1.734
  
  Molprobity Statistics.
    All-atom Clashscore : 3.61
    Ramachandran Plot:
      Outliers :  2.19 %
      Allowed  : 10.22 %
      Favored  : 87.59 %
    Rotamer:
      Outliers :  0.00 %
      Allowed  :  0.00 %
      Favored  : 100.00 %
    Cbeta Deviations :  0.76 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.76 %
      Twisted Proline : 0.00 %
      Twisted General : 0.00 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -2.00 (0.63), residues: 137
    helix:  0.14 (0.56), residues: 62
    sheet:  None (None), residues: 0
    loop : -2.77 (0.63), residues: 75
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.005   0.001   HIS A 139 
   PHE   0.118   0.023   PHE A  15 
   TYR   0.072   0.013   TYR A  81 
   ARG   0.051   0.013   ARG A 129 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.005   0.001   HIS A 139 
   PHE   0.062   0.019   PHE A  15 
   TYR   0.056   0.012   TYR A  81 
   ARG   0.008   0.002   ARG A  21 

                     ----------Asn/Gln/His flips----------                     

  No backwards Asn/Gln/His sidechains found.

=================================== Summary ===================================


End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  atoms                 ideal   model   delta   sigma   slack  residual   deviation
   A 135  HIS  CE1
   A 135  HIS  NE2         1.32     1.38    -0.06  1.00e-02  3.43e+01   5.9*sigma
   A  70  LEU  C
   A  71  ILE  N           1.33     1.39    -0.06  1.40e-02  1.75e+01   4.2*sigma

  Min. delta:    0.000 (Z=  0.002)
  Max. delta:    0.059 (Z=  5.857)
  Mean delta:    0.016 (Z=  0.883)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 110  ASP  CA
   A 110  ASP  CB
   A 110  ASP  CG        112.60   121.06    -8.46  1.00e+00  7.16e+01   8.5*sigma
   A  69  ALA  C
   A  69  ALA  CA
   A  69  ALA  CB        110.50   100.61     9.89  1.50e+00  4.35e+01   6.6*sigma
   A 116  ASP  CA
   A 116  ASP  C
   A 117  PRO  N         116.90   126.15    -9.25  1.50e+00  3.80e+01   6.2*sigma
   A  30  ILE  CA
   A  30  ILE  CB
   A  30  ILE  CG1       110.40   120.05    -9.65  1.70e+00  3.22e+01   5.7*sigma
   A 134  HIS  CB
   A 134  HIS  CG
   A 134  HIS  ND1       122.70   114.54     8.16  1.50e+00  2.96e+01   5.4*sigma
   A  45  PHE  CA
   A  45  PHE  CB
   A  45  PHE  CG        113.80   108.44     5.36  1.00e+00  2.87e+01   5.4*sigma
   A 135  HIS  ND1
   A 135  HIS  CE1
   A 135  HIS  NE2       108.40   113.52    -5.12  1.00e+00  2.62e+01   5.1*sigma
   A 113  LYS  N
   A 113  LYS  CA
   A 113  LYS  CB        110.50   118.98    -8.48  1.70e+00  2.49e+01   5.0*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   111.08    -4.98  1.00e+00  2.48e+01   5.0*sigma
   A 135  HIS  CD2
   A 135  HIS  NE2
   A 135  HIS  CE1       109.00   104.12     4.88  1.00e+00  2.39e+01   4.9*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.71    -4.61  1.00e+00  2.13e+01   4.6*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.66    -4.56  1.00e+00  2.08e+01   4.6*sigma
   A 135  HIS  CA
   A 135  HIS  CB
   A 135  HIS  CG        113.80   109.36     4.44  1.00e+00  1.97e+01   4.4*sigma
   A  51  ILE  CA
   A  51  ILE  C
   A  52  PRO  N         116.90   123.44    -6.54  1.50e+00  1.90e+01   4.4*sigma
   A 136  HIS  ND1
   A 136  HIS  CG
   A 136  HIS  CD2       106.10   110.34    -4.24  1.00e+00  1.80e+01   4.2*sigma
   A 134  HIS  ND1
   A 134  HIS  CG
   A 134  HIS  CD2       106.10   110.33    -4.23  1.00e+00  1.79e+01   4.2*sigma
   A 116  ASP  O
   A 116  ASP  C
   A 117  PRO  N         123.00   116.31     6.69  1.60e+00  1.75e+01   4.2*sigma
   A  15  PHE  N
   A  15  PHE  CA
   A  15  PHE  CB        110.50   117.49    -6.99  1.70e+00  1.69e+01   4.1*sigma
   A 118  ASP  CA
   A 118  ASP  CB
   A 118  ASP  CG        112.60   108.49     4.11  1.00e+00  1.69e+01   4.1*sigma

  Min. delta:    0.003 (Z=  0.001)
  Max. delta:   11.186 (Z=  8.460)
  Mean delta:    2.324 (Z=  1.313)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 127  ARG  CA
   A 127  ARG  C
   A 128  MET  N
   A 128  MET  CA        180.00   153.37    26.63  5.00e+00  2.84e+01   5.3*sigma
   A  21  ARG  CA
   A  21  ARG  C
   A  22  PRO  N
   A  22  PRO  CA        180.00   156.09    23.91  5.00e+00  2.29e+01   4.8*sigma

  Min. delta:    0.005
  Max. delta:   59.944
  Mean delta:   10.637

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.535
  Mean delta:    0.116

                       ----------Planar groups----------                       

  atoms                 rms_deltas   delta_max    residual   deviation
   A  45  PHE  CB
   A  45  PHE  CG
   A  45  PHE  CD1
   A  45  PHE  CD2
   A  45  PHE  CE1
   A  45  PHE  CE2
   A  45  PHE  CZ            0.053       0.083       49.37   4.2*sigma

  Min. delta:    0.000
  Max. delta:    0.073
  Mean delta:    0.013

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

                       ----------Angle outliers----------                      

   A   2  LEU  HG , Angle CB-CG-HG, observed: 96.831, delta from target: 12.169
   A 113  LYS  HA , Angle N-CA-HA, observed: 95.543, delta from target: 14.457

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.012   0.059   2241  Z= 0.629
    Angle     :  2.078  14.457   4077  Z= 0.950
    Chirality :  0.116   0.535    176
    Planarity :  0.011   0.073    326
    Dihedral  :  9.619  59.944    768
    Min Nonbonded Distance : 1.691
  
  Molprobity Statistics.
    All-atom Clashscore : 9.02
    Ramachandran Plot:
      Outliers :  3.65 %
      Allowed  :  7.30 %
      Favored  : 89.05 %
    Rotamer:
      Outliers :  0.00 %
      Allowed  :  4.03 %
      Favored  : 95.97 %
    Cbeta Deviations :  3.03 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.00 %
      Twisted Proline : 0.00 %
      Twisted General : 0.00 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -0.22 (0.71), residues: 137
    helix:  1.00 (0.62), residues: 66
    sheet: -1.20 (1.48), residues: 10
    loop : -1.24 (0.82), residues: 61
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.007   0.002   HIS A 134 
   PHE   0.124   0.030   PHE A  45 
   TYR   0.087   0.019   TYR A 111 
   ARG   0.033   0.012   ARG A 129 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.007   0.002   HIS A 134 
   PHE   0.083   0.026   PHE A  45 
   TYR   0.068   0.019   TYR A 111 
   ARG   0.018   0.007   ARG A 129 

                     ----------Asn/Gln/His flips----------                     

  No backwards Asn/Gln/His sidechains found.

=================================== Summary ===================================

  Time building chain proxies: 0.80, per 1000 atoms: 0.36
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (95.997, 47.256, 67.934, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.
  Ramachandran outliers =   7.30 %
                favored =  83.21 %
  Rotamer outliers      =   0.00 %
  C-beta deviations     =     2
  Clashscore            =   4.51
  RMS(bonds)            =   0.0110
  RMS(angles)           =   2.13
  MolProbity score      =   1.92

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py
  Time building chain proxies: 0.99, per 1000 atoms: 0.45
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (55.239, 69.984, 66.652, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.
  Ramachandran outliers =   2.19 %
                favored =  87.59 %
  Rotamer outliers      =   0.00 %
  C-beta deviations     =     1
  Clashscore            =   3.61
  RMS(bonds)            =   0.0116
  RMS(angles)           =   1.97
  MolProbity score      =   1.76

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py
  Ramachandran outliers =   3.65 %
                favored =  89.05 %
  Rotamer outliers      =   0.00 %
  C-beta deviations     =     4
  Clashscore            =   9.02
  RMS(bonds)            =   0.0115
  RMS(angles)           =   2.08
  MolProbity score      =   2.06

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py

End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000 (Z=  0.000)
  Max. delta:    0.071 (Z=  3.643)
  Mean delta:    0.015 (Z=  0.805)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 116  ASP  CA
   A 116  ASP  C
   A 117  PRO  N         116.90   125.76    -8.86  1.50e+00  3.49e+01   5.9*sigma
   A 116  ASP  CA
   A 116  ASP  CB
   A 116  ASP  CG        112.60   117.33    -4.73  1.00e+00  2.24e+01   4.7*sigma
   A  77  ILE  C
   A  78  ILE  N
   A  78  ILE  CA        121.70   130.05    -8.35  1.80e+00  2.15e+01   4.6*sigma
   A  21  ARG  CA
   A  21  ARG  C
   A  22  PRO  N         116.90   123.66    -6.76  1.50e+00  2.03e+01   4.5*sigma
   A 138  HIS  ND1
   A 138  HIS  CG
   A 138  HIS  CD2       106.10   110.54    -4.44  1.00e+00  1.97e+01   4.4*sigma
   A 116  ASP  O
   A 116  ASP  C
   A 117  PRO  N         123.00   115.93     7.07  1.60e+00  1.95e+01   4.4*sigma
   A 101  LYS  CA
   A 101  LYS  C
   A 102  PRO  N         116.90   123.51    -6.61  1.50e+00  1.94e+01   4.4*sigma
   A  34  THR  CA
   A  34  THR  CB
   A  34  THR  CG2       110.50   117.97    -7.47  1.70e+00  1.93e+01   4.4*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.45    -4.35  1.00e+00  1.89e+01   4.3*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   110.37    -4.27  1.00e+00  1.82e+01   4.3*sigma
   A  78  ILE  CA
   A  78  ILE  CB
   A  78  ILE  CG2       110.50   117.70    -7.20  1.70e+00  1.80e+01   4.2*sigma
   A 136  HIS  ND1
   A 136  HIS  CG
   A 136  HIS  CD2       106.10   110.32    -4.22  1.00e+00  1.78e+01   4.2*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.20    -4.10  1.00e+00  1.68e+01   4.1*sigma
   A 113  LYS  CA
   A 113  LYS  C
   A 114  PRO  N         116.90   123.03    -6.13  1.50e+00  1.67e+01   4.1*sigma

  Min. delta:    0.002 (Z=  0.001)
  Max. delta:    8.860 (Z=  5.907)
  Mean delta:    2.176 (Z=  1.222)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 122  ILE  CA
   A 122  ILE  C
   A 123  GLU  N
   A 123  GLU  CA        180.00   154.06    25.94  5.00e+00  2.69e+01   5.2*sigma
   A 121  GLY  CA
   A 121  GLY  C
   A 122  ILE  N
   A 122  ILE  CA        180.00   158.13    21.87  5.00e+00  1.91e+01   4.4*sigma

  Min. delta:    0.033
  Max. delta:   63.493
  Mean delta:    9.332

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.401
  Mean delta:    0.104

                       ----------Planar groups----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.055
  Mean delta:    0.012

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.011   0.071   2241  Z= 0.573
    Angle     :  1.957  10.888   4077  Z= 0.889
    Chirality :  0.104   0.401    176
    Planarity :  0.010   0.061    326
    Dihedral  :  8.500  63.493    768
    Min Nonbonded Distance : 1.714
  
  Molprobity Statistics.
    All-atom Clashscore : 5.41
    Ramachandran Plot:
      Outliers :  2.92 %
      Allowed  : 10.22 %
      Favored  : 86.86 %
    Rotamer:
      Outliers :  0.81 %
      Allowed  :  0.00 %
      Favored  : 99.19 %
    Cbeta Deviations :  1.52 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.00 %
      Twisted Proline : 0.00 %
      Twisted General : 0.00 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -0.90 (0.67), residues: 137
    helix:  0.80 (0.54), residues: 78
    sheet:  None (None), residues: 0
    loop : -2.65 (0.73), residues: 59
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.005   0.002   HIS A 139 
   PHE   0.085   0.025   PHE A  45 
   TYR   0.091   0.018   TYR A 111 
   ARG   0.018   0.004   ARG A  58 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.005   0.002   HIS A 139 
   PHE   0.072   0.023   PHE A  45 
   TYR   0.068   0.018   TYR A 111 
   ARG   0.011   0.002   ARG A  58 

                     ----------Asn/Gln/His flips----------                     

  No backwards Asn/Gln/His sidechains found.

=================================== Summary ===================================


End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000 (Z=  0.001)
  Max. delta:    0.049 (Z=  3.563)
  Mean delta:    0.015 (Z=  0.822)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  30  ILE  CA
   A  30  ILE  CB
   A  30  ILE  CG1       110.40   120.93   -10.53  1.70e+00  3.84e+01   6.2*sigma
   A  87  GLY  C
   A  88  ASP  N
   A  88  ASP  CA        121.70   132.17   -10.47  1.80e+00  3.38e+01   5.8*sigma
   A   2  LEU  CB
   A   2  LEU  CG
   A   2  LEU  CD1       110.70   126.86   -16.16  3.00e+00  2.90e+01   5.4*sigma
   A  92  THR  CA
   A  92  THR  CB
   A  92  THR  CG2       110.50   119.15    -8.65  1.70e+00  2.59e+01   5.1*sigma
   A 138  HIS  ND1
   A 138  HIS  CG
   A 138  HIS  CD2       106.10   110.80    -4.70  1.00e+00  2.21e+01   4.7*sigma
   A 113  LYS  CA
   A 113  LYS  C
   A 114  PRO  N         116.90   123.95    -7.05  1.50e+00  2.21e+01   4.7*sigma
   A 134  HIS  ND1
   A 134  HIS  CG
   A 134  HIS  CD2       106.10   110.50    -4.40  1.00e+00  1.94e+01   4.4*sigma
   A   2  LEU  CD1
   A   2  LEU  CG
   A   2  LEU  CD2       110.80   101.13     9.67  2.20e+00  1.93e+01   4.4*sigma
   A 117  PRO  C
   A 118  ASP  N
   A 118  ASP  CA        121.70   129.51    -7.81  1.80e+00  1.88e+01   4.3*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.37    -4.27  1.00e+00  1.82e+01   4.3*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   110.33    -4.23  1.00e+00  1.79e+01   4.2*sigma
   A   2  LEU  N
   A   2  LEU  CA
   A   2  LEU  CB        110.50   103.38     7.12  1.70e+00  1.76e+01   4.2*sigma
   A  51  ILE  CA
   A  51  ILE  C
   A  52  PRO  N         116.90   123.10    -6.20  1.50e+00  1.71e+01   4.1*sigma
   A  20  THR  CA
   A  20  THR  CB
   A  20  THR  OG1       109.60   115.80    -6.20  1.50e+00  1.71e+01   4.1*sigma
   A 138  HIS  ND1
   A 138  HIS  CE1
   A 138  HIS  NE2       108.40   112.43    -4.03  1.00e+00  1.63e+01   4.0*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.12    -4.02  1.00e+00  1.61e+01   4.0*sigma
   A 139  HIS  ND1
   A 139  HIS  CE1
   A 139  HIS  NE2       108.40   112.40    -4.00  1.00e+00  1.60e+01   4.0*sigma

  Min. delta:    0.001 (Z=  0.000)
  Max. delta:   16.164 (Z=  6.195)
  Mean delta:    2.191 (Z=  1.220)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  21  ARG  CA
   A  21  ARG  C
   A  22  PRO  N
   A  22  PRO  CA        180.00   152.66    27.34  5.00e+00  2.99e+01   5.5*sigma
   A  88  ASP  CA
   A  88  ASP  C
   A  89  TYR  N
   A  89  TYR  CA        180.00   152.77    27.23  5.00e+00  2.96e+01   5.4*sigma

  Min. delta:    0.008
  Max. delta:   62.329
  Mean delta:   10.879

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.466
  Mean delta:    0.096

                       ----------Planar groups----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.072
  Mean delta:    0.014

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

                       ----------Angle outliers----------                      

   A   2  LEU  HG , Angle CB-CG-HG, observed: 95.085, delta from target: 13.915
   A  30  ILE  HB , Angle CA-CB-HB, observed: 94.764, delta from target: 14.236
   A   2  LEU  HG , Angle CD2-CG-HG, observed: 123.552, delta from target: -15.552

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.011   0.049   2241  Z= 0.585
    Angle     :  1.998  16.164   4077  Z= 0.897
    Chirality :  0.096   0.466    176
    Planarity :  0.011   0.072    326
    Dihedral  :  9.611  62.329    768
    Min Nonbonded Distance : 1.399
  
  Molprobity Statistics.
    All-atom Clashscore : 3.61
    Ramachandran Plot:
      Outliers :  1.46 %
      Allowed  :  7.30 %
      Favored  : 91.24 %
    Rotamer:
      Outliers :  1.61 %
      Allowed  :  0.00 %
      Favored  : 98.39 %
    Cbeta Deviations :  0.76 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.00 %
      Twisted Proline : 0.00 %
      Twisted General : 0.00 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole:  0.32 (0.75), residues: 137
    helix:  1.57 (0.61), residues: 64
    sheet:  None (None), residues: 0
    loop : -1.07 (0.82), residues: 73
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.005   0.001   HIS A 138 
   PHE   0.120   0.038   PHE A  15 
   TYR   0.133   0.020   TYR A  89 
   ARG   0.022   0.006   ARG A 129 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.005   0.001   HIS A 138 
   PHE   0.069   0.026   PHE A  45 
   TYR   0.099   0.018   TYR A  89 
   ARG   0.013   0.003   ARG A  58 

                     ----------Asn/Gln/His flips----------                     

  No backwards Asn/Gln/His sidechains found.

=================================== Summary ===================================

Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  


End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000 (Z=  0.000)
  Max. delta:    0.061 (Z=  3.593)
  Mean delta:    0.016 (Z=  0.830)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  30  ILE  CA
   A  30  ILE  CB
   A  30  ILE  CG1       110.40   122.13   -11.73  1.70e+00  4.76e+01   6.9*sigma
   A  51  ILE  CA
   A  51  ILE  C
   A  52  PRO  N         116.90   125.08    -8.18  1.50e+00  2.98e+01   5.5*sigma
   A  67  PHE  CA
   A  67  PHE  CB
   A  67  PHE  CG        113.80   108.89     4.91  1.00e+00  2.42e+01   4.9*sigma
   A  53  LEU  CA
   A  53  LEU  C
   A  54  PRO  N         116.90   124.22    -7.32  1.50e+00  2.38e+01   4.9*sigma
   A 113  LYS  CA
   A 113  LYS  C
   A 114  PRO  N         116.90   123.96    -7.06  1.50e+00  2.21e+01   4.7*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.57    -4.47  1.00e+00  2.00e+01   4.5*sigma
   A  50  TYR  C
   A  51  ILE  N
   A  51  ILE  CA        121.70   129.75    -8.05  1.80e+00  2.00e+01   4.5*sigma
   A 136  HIS  ND1
   A 136  HIS  CG
   A 136  HIS  CD2       106.10   110.49    -4.39  1.00e+00  1.93e+01   4.4*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   110.38    -4.28  1.00e+00  1.83e+01   4.3*sigma
   A  30  ILE  C
   A  31  LEU  N
   A  31  LEU  CA        121.70   129.37    -7.67  1.80e+00  1.82e+01   4.3*sigma
   A 111  TYR  C
   A 111  TYR  CA
   A 111  TYR  CB        110.10   102.05     8.05  1.90e+00  1.79e+01   4.2*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.30    -4.20  1.00e+00  1.76e+01   4.2*sigma
   A  43  HIS  CB
   A  43  HIS  CG
   A  43  HIS  ND1       122.70   116.40     6.30  1.50e+00  1.76e+01   4.2*sigma
   A 134  HIS  ND1
   A 134  HIS  CG
   A 134  HIS  CD2       106.10   110.25    -4.15  1.00e+00  1.73e+01   4.2*sigma
   A 139  HIS  ND1
   A 139  HIS  CE1
   A 139  HIS  NE2       108.40   112.47    -4.07  1.00e+00  1.66e+01   4.1*sigma
   A 138  HIS  ND1
   A 138  HIS  CG
   A 138  HIS  CD2       106.10   110.15    -4.05  1.00e+00  1.64e+01   4.1*sigma
   A 118  ASP  C
   A 119  LEU  N
   A 119  LEU  CA        121.70   128.93    -7.23  1.80e+00  1.61e+01   4.0*sigma

  Min. delta:    0.001 (Z=  0.001)
  Max. delta:   11.727 (Z=  6.898)
  Mean delta:    2.352 (Z=  1.288)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 138  HIS  CA
   A 138  HIS  C
   A 139  HIS  N
   A 139  HIS  CA        180.00   159.69    20.31  5.00e+00  1.65e+01   4.1*sigma

  Min. delta:    0.026
  Max. delta:   62.455
  Mean delta:   11.057

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.001
  Max. delta:    0.475
  Mean delta:    0.112

                       ----------Planar groups----------                       

  atoms                 rms_deltas   delta_max    residual   deviation
   A  68  TYR  CB
   A  68  TYR  CG
   A  68  TYR  CD1
   A  68  TYR  CD2
   A  68  TYR  CE1
   A  68  TYR  CE2
   A  68  TYR  CZ
   A  68  TYR  OH            0.125       0.130      310.17   6.5*sigma
   A  91  TYR  CB
   A  91  TYR  CG
   A  91  TYR  CD1
   A  91  TYR  CD2
   A  91  TYR  CE1
   A  91  TYR  CE2
   A  91  TYR  CZ
   A  91  TYR  OH            0.063       0.117       79.82   5.9*sigma
   A 105  TYR  CB
   A 105  TYR  CG
   A 105  TYR  CD1
   A 105  TYR  CD2
   A 105  TYR  CE1
   A 105  TYR  CE2
   A 105  TYR  CZ
   A 105  TYR  OH            0.052       0.098       53.31   4.9*sigma
   A  45  PHE  CB
   A  45  PHE  CG
   A  45  PHE  CD1
   A  45  PHE  CD2
   A  45  PHE  CE1
   A  45  PHE  CE2
   A  45  PHE  CZ            0.061       0.094       64.33   4.7*sigma

  Min. delta:    0.000
  Max. delta:    0.125
  Mean delta:    0.016

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

                       ----------Angle outliers----------                      

   A   2  LEU  HG , Angle CB-CG-HG, observed: 93.277, delta from target: 15.723

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.011   0.061   2241  Z= 0.591
    Angle     :  2.091  15.723   4077  Z= 0.938
    Chirality :  0.112   0.475    176
    Planarity :  0.014   0.129    326
    Dihedral  : 10.639  69.913    768
    Min Nonbonded Distance : 1.723
  
  Molprobity Statistics.
    All-atom Clashscore : 9.02
    Ramachandran Plot:
      Outliers :  1.46 %
      Allowed  :  8.76 %
      Favored  : 89.78 %
    Rotamer:
      Outliers :  0.81 %
      Allowed  :  4.03 %
      Favored  : 95.16 %
    Cbeta Deviations :  1.52 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.00 %
      Twisted Proline : 0.00 %
      Twisted General : 0.00 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -1.64 (0.66), residues: 137
    helix:  0.51 (0.53), residues: 77
    sheet:  None (None), residues: 0
    loop : -3.42 (0.68), residues: 60
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.005   0.001   HIS A 139 
   PHE   0.163   0.044   PHE A  45 
   TYR   0.251   0.036   TYR A  68 
   ARG   0.021   0.005   ARG A  58 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.005   0.001   HIS A 139 
   PHE   0.094   0.036   PHE A  45 
   TYR   0.211   0.036   TYR A  68 
   ARG   0.004   0.001   ARG A 127 

                     ----------Asn/Gln/His flips----------                     

  No backwards Asn/Gln/His sidechains found.

=================================== Summary ===================================


============================== Collecting inputs ==============================


============================== Collecting inputs ==============================


End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  atoms                 ideal   model   delta   sigma   slack  residual   deviation
   A 117  PRO  C
   A 118  ASP  N           1.33     1.41    -0.08  1.40e-02  3.38e+01   5.8*sigma
   A 116  ASP  C
   A 116  ASP  O           1.23     1.34    -0.11  2.00e-02  3.09e+01   5.6*sigma

  Min. delta:    0.000 (Z=  0.000)
  Max. delta:    0.111 (Z=  5.813)
  Mean delta:    0.018 (Z=  0.920)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  74  ASP  CA
   A  74  ASP  CB
   A  74  ASP  CG        112.60   104.62     7.98  1.00e+00  6.37e+01   8.0*sigma
   A 117  PRO  N
   A 117  PRO  CA
   A 117  PRO  C         112.10   130.13   -18.03  2.50e+00  5.20e+01   7.2*sigma
   A  29  ASP  CA
   A  29  ASP  CB
   A  29  ASP  CG        112.60   119.62    -7.02  1.00e+00  4.93e+01   7.0*sigma
   A  98  SER  C
   A  99  LEU  N
   A  99  LEU  CA        121.70   134.05   -12.35  1.80e+00  4.71e+01   6.9*sigma
   A 116  ASP  C
   A 116  ASP  CA
   A 116  ASP  CB        110.10   121.83   -11.73  1.90e+00  3.81e+01   6.2*sigma
   A 138  HIS  C
   A 139  HIS  N
   A 139  HIS  CA        121.70   131.87   -10.17  1.80e+00  3.19e+01   5.7*sigma
   A 116  ASP  CA
   A 116  ASP  CB
   A 116  ASP  CG        112.60   118.23    -5.63  1.00e+00  3.17e+01   5.6*sigma
   A 113  LYS  CA
   A 113  LYS  C
   A 114  PRO  N         116.90   124.83    -7.93  1.50e+00  2.79e+01   5.3*sigma
   A 118  ASP  N
   A 118  ASP  CA
   A 118  ASP  CB        110.50   118.88    -8.38  1.70e+00  2.43e+01   4.9*sigma
   A  99  LEU  N
   A  99  LEU  CA
   A  99  LEU  C         111.00   124.65   -13.65  2.80e+00  2.38e+01   4.9*sigma
   A 117  PRO  N
   A 117  PRO  CA
   A 117  PRO  CB        103.00    97.74     5.26  1.10e+00  2.29e+01   4.8*sigma
   A  51  ILE  CA
   A  51  ILE  C
   A  52  PRO  N         116.90   123.81    -6.91  1.50e+00  2.12e+01   4.6*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   110.70    -4.60  1.00e+00  2.12e+01   4.6*sigma
   A 139  HIS  CA
   A 139  HIS  CB
   A 139  HIS  CG        113.80   118.40    -4.60  1.00e+00  2.11e+01   4.6*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.50    -4.40  1.00e+00  1.94e+01   4.4*sigma
   A  43  HIS  ND1
   A  43  HIS  CG
   A  43  HIS  CD2       106.10   110.50    -4.40  1.00e+00  1.93e+01   4.4*sigma
   A 136  HIS  ND1
   A 136  HIS  CG
   A 136  HIS  CD2       106.10   110.40    -4.30  1.00e+00  1.85e+01   4.3*sigma
   A 134  HIS  ND1
   A 134  HIS  CG
   A 134  HIS  CD2       106.10   110.39    -4.29  1.00e+00  1.84e+01   4.3*sigma
   A 101  LYS  CA
   A 101  LYS  C
   A 102  PRO  N         116.90   123.29    -6.39  1.50e+00  1.81e+01   4.3*sigma
   A  99  LEU  N
   A  99  LEU  CA
   A  99  LEU  CB        110.50   103.53     6.97  1.70e+00  1.68e+01   4.1*sigma
   A 116  ASP  O
   A 116  ASP  C
   A 117  PRO  N         123.00   116.57     6.43  1.60e+00  1.62e+01   4.0*sigma
   A  53  LEU  CA
   A  53  LEU  C
   A  54  PRO  N         116.90   122.92    -6.02  1.50e+00  1.61e+01   4.0*sigma

  Min. delta:    0.000 (Z=  0.000)
  Max. delta:   18.028 (Z=  7.979)
  Mean delta:    2.363 (Z=  1.317)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 116  ASP  CA
   A 116  ASP  C
   A 117  PRO  N
   A 117  PRO  CA        180.00  -144.47   -35.53  5.00e+00  5.05e+01   7.1*sigma
   A 119  LEU  CA
   A 119  LEU  C
   A 120  GLU  N
   A 120  GLU  CA        180.00   149.99    30.01  5.00e+00  3.60e+01   6.0*sigma
   A  96  GLY  CA
   A  96  GLY  C
   A  97  SER  N
   A  97  SER  CA        180.00   154.42    25.58  5.00e+00  2.62e+01   5.1*sigma
   A 121  GLY  CA
   A 121  GLY  C
   A 122  ILE  N
   A 122  ILE  CA        180.00   156.02    23.98  5.00e+00  2.30e+01   4.8*sigma
   A  89  TYR  CA
   A  89  TYR  C
   A  90  SER  N
   A  90  SER  CA        180.00   157.11    22.89  5.00e+00  2.10e+01   4.6*sigma
   A 136  HIS  CA
   A 136  HIS  C
   A 137  HIS  N
   A 137  HIS  CA        180.00   159.61    20.39  5.00e+00  1.66e+01   4.1*sigma

  Min. delta:    0.012
  Max. delta:   83.975
  Mean delta:   11.683

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.002
  Max. delta:    0.680
  Mean delta:    0.131

                       ----------Planar groups----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.060
  Mean delta:    0.012

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

                       ----------Angle outliers----------                      

   A  89  TYR  HA , Angle N-CA-HA, observed: 97.993, delta from target: 12.007
   A  99  LEU  HA , Angle C-CA-HA, observed: 96.858, delta from target: 12.142
   A 117  PRO  HA , Angle C-CA-HA, observed: 96.577, delta from target: 12.423
   A   2  LEU  HG , Angle CD2-CG-HG, observed: 120.757, delta from target: -12.757
   A 118  ASP  HA , Angle N-CA-HA, observed: 96.874, delta from target: 13.126
   A 117  PRO  HA , Angle CB-CA-HA, observed: 129.543, delta from target: -20.543

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.012   0.111   2241  Z= 0.655
    Angle     :  2.151  20.543   4077  Z= 0.967
    Chirality :  0.131   0.680    176
    Planarity :  0.009   0.052    326
    Dihedral  : 10.292  83.975    768
    Min Nonbonded Distance : 1.718
  
  Molprobity Statistics.
    All-atom Clashscore : 2.71
    Ramachandran Plot:
      Outliers :  5.84 %
      Allowed  : 12.41 %
      Favored  : 81.75 %
    Rotamer:
      Outliers :  0.00 %
      Allowed  :  2.42 %
      Favored  : 97.58 %
    Cbeta Deviations :  3.03 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.00 %
      Twisted Proline : 14.29 %
      Twisted General : 0.76 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -1.14 (0.73), residues: 137
    helix:  1.47 (0.57), residues: 75
    sheet:  None (None), residues: 0
    loop : -3.89 (0.73), residues: 62
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.006   0.001   HIS A 139 
   PHE   0.077   0.019   PHE A  45 
   TYR   0.083   0.014   TYR A 105 
   ARG   0.046   0.010   ARG A  58 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.006   0.001   HIS A 139 
   PHE   0.030   0.011   PHE A  45 
   TYR   0.057   0.012   TYR A 105 
   ARG   0.012   0.003   ARG A  21 

                     ----------Asn/Gln/His flips----------                     

  No backwards Asn/Gln/His sidechains found.

=================================== Summary ===================================

  Ramachandran outliers =   2.92 %
                favored =  86.86 %
  Rotamer outliers      =   0.81 %
  C-beta deviations     =     2
  Clashscore            =   5.41
  RMS(bonds)            =   0.0110
  RMS(angles)           =   1.96
  MolProbity score      =   1.92

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py
  Ramachandran outliers =   1.46 %
                favored =  91.24 %
  Rotamer outliers      =   1.61 %
  C-beta deviations     =     1
  Clashscore            =   3.61
  RMS(bonds)            =   0.0110
  RMS(angles)           =   2.00
  MolProbity score      =   1.82

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py

End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000 (Z=  0.000)
  Max. delta:    0.066 (Z=  3.964)
  Mean delta:    0.015 (Z=  0.812)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 103  ASP  CA
   A 103  ASP  CB
   A 103  ASP  CG        112.60   117.96    -5.36  1.00e+00  2.88e+01   5.4*sigma
   A 138  HIS  N
   A 138  HIS  CA
   A 138  HIS  C         111.00   124.84   -13.84  2.80e+00  2.44e+01   4.9*sigma
   A  48  ALA  C
   A  49  GLU  N
   A  49  GLU  CA        121.70   130.42    -8.72  1.80e+00  2.34e+01   4.8*sigma
   A 113  LYS  CA
   A 113  LYS  C
   A 114  PRO  N         116.90   123.90    -7.00  1.50e+00  2.18e+01   4.7*sigma
   A 134  HIS  ND1
   A 134  HIS  CG
   A 134  HIS  CD2       106.10   110.59    -4.49  1.00e+00  2.02e+01   4.5*sigma
   A  43  HIS  CB
   A  43  HIS  CG
   A  43  HIS  ND1       122.70   116.04     6.66  1.50e+00  1.97e+01   4.4*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   110.31    -4.21  1.00e+00  1.77e+01   4.2*sigma
   A 138  HIS  ND1
   A 138  HIS  CG
   A 138  HIS  CD2       106.10   110.30    -4.20  1.00e+00  1.77e+01   4.2*sigma
   A 119  LEU  N
   A 119  LEU  CA
   A 119  LEU  CB        110.50   117.63    -7.13  1.70e+00  1.76e+01   4.2*sigma
   A 136  HIS  ND1
   A 136  HIS  CG
   A 136  HIS  CD2       106.10   110.28    -4.18  1.00e+00  1.75e+01   4.2*sigma
   A 123  GLU  C
   A 124  ALA  N
   A 124  ALA  CA        121.70   129.06    -7.36  1.80e+00  1.67e+01   4.1*sigma
   A  51  ILE  CA
   A  51  ILE  C
   A  52  PRO  N         116.90   122.94    -6.04  1.50e+00  1.62e+01   4.0*sigma

  Min. delta:    0.000 (Z=  0.000)
  Max. delta:   13.838 (Z=  5.363)
  Mean delta:    2.256 (Z=  1.257)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 137  HIS  CA
   A 137  HIS  C
   A 138  HIS  N
   A 138  HIS  CA        180.00   127.45    52.55  5.00e+00  1.10e+02  10.5*sigma
   A 138  HIS  CA
   A 138  HIS  C
   A 139  HIS  N
   A 139  HIS  CA        180.00   128.46    51.54  5.00e+00  1.06e+02  10.3*sigma
   A 118  ASP  CA
   A 118  ASP  C
   A 119  LEU  N
   A 119  LEU  CA        180.00   137.72    42.28  5.00e+00  7.15e+01   8.5*sigma
   A  14  VAL  CA
   A  14  VAL  C
   A  15  PHE  N
   A  15  PHE  CA        180.00  -156.80   -23.20  5.00e+00  2.15e+01   4.6*sigma
   A 133  GLU  CA
   A 133  GLU  C
   A 134  HIS  N
   A 134  HIS  CA        180.00   157.84    22.16  5.00e+00  1.96e+01   4.4*sigma
   A 119  LEU  CA
   A 119  LEU  C
   A 120  GLU  N
   A 120  GLU  CA        180.00   158.59    21.41  5.00e+00  1.83e+01   4.3*sigma

  Min. delta:    0.010
  Max. delta:   79.516
  Mean delta:   12.668

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.611
  Mean delta:    0.124

                       ----------Planar groups----------                       

  atoms                 rms_deltas   delta_max    residual   deviation
   A  12  TYR  CB
   A  12  TYR  CG
   A  12  TYR  CD1
   A  12  TYR  CD2
   A  12  TYR  CE1
   A  12  TYR  CE2
   A  12  TYR  CZ
   A  12  TYR  OH            0.048       0.089       45.94   4.5*sigma

  Min. delta:    0.000
  Max. delta:    0.064
  Mean delta:    0.014

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

                       ----------Angle outliers----------                      

   A 138  HIS  HA , Angle CB-CA-HA, observed: 121.750, delta from target: -12.750

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.011   0.066   2241  Z= 0.578
    Angle     :  2.030  13.838   4077  Z= 0.917
    Chirality :  0.124   0.611    176
    Planarity :  0.011   0.054    326
    Dihedral  : 11.620  79.516    768
    Min Nonbonded Distance : 1.821
  
  Molprobity Statistics.
    All-atom Clashscore : 4.06
    Ramachandran Plot:
      Outliers :  4.38 %
      Allowed  :  4.38 %
      Favored  : 91.24 %
    Rotamer:
      Outliers :  0.81 %
      Allowed  :  0.00 %
      Favored  : 99.19 %
    Cbeta Deviations :  0.76 %
    Peptide Plane:
      Cis-proline     : 14.29 %
      Cis-general     : 0.00 %
      Twisted Proline : 0.00 %
      Twisted General : 2.29 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -0.38 (0.68), residues: 137
    helix:  1.16 (0.57), residues: 63
    sheet: -0.39 (1.57), residues: 10
    loop : -1.74 (0.77), residues: 64
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.005   0.002   HIS A 134 
   PHE   0.086   0.021   PHE A  15 
   TYR   0.121   0.022   TYR A  81 
   ARG   0.069   0.019   ARG A  58 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.005   0.002   HIS A 134 
   PHE   0.053   0.020   PHE A  15 
   TYR   0.089   0.020   TYR A  12 
   ARG   0.036   0.007   ARG A  58 

                     ----------Asn/Gln/His flips----------                     

  No backwards Asn/Gln/His sidechains found.

=================================== Summary ===================================

  Ramachandran outliers =   1.46 %
                favored =  89.78 %
  Rotamer outliers      =   0.81 %
  C-beta deviations     =     2
  Clashscore            =   9.02
  RMS(bonds)            =   0.0113
  RMS(angles)           =   2.09
  MolProbity score      =   2.04

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py
  Ramachandran outliers =   5.84 %
                favored =  81.75 %
  Rotamer outliers      =   0.00 %
  C-beta deviations     =     4
  Clashscore            =   2.71
  RMS(bonds)            =   0.0125
  RMS(angles)           =   2.15
  MolProbity score      =   1.77

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py
Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  

  Ramachandran outliers =   4.38 %
                favored =  91.24 %
  Rotamer outliers      =   0.81 %
  C-beta deviations     =     1
  Clashscore            =   4.06
  RMS(bonds)            =   0.0110
  RMS(angles)           =   2.03
  MolProbity score      =   1.70

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py
Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  


  Symmetric amino acids flipped
    Residue "A GLU    8": "OE1" <-> "OE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ASP   29": "OD1" <-> "OD2"
    Residue "A ASP   36": "OD1" <-> "OD2"
    Residue "A ASP   47": "OD1" <-> "OD2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   75": "OE1" <-> "OE2"
    Residue "A TYR   89": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU  133": "OE1" <-> "OE2"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""

End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000 (Z=  0.000)
  Max. delta:    0.048 (Z=  3.907)
  Mean delta:    0.015 (Z=  0.778)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  47  ASP  C
   A  48  ALA  N
   A  48  ALA  CA        121.70   135.14   -13.44  1.80e+00  5.58e+01   7.5*sigma
   A 115  ALA  C
   A 116  ASP  N
   A 116  ASP  CA        121.70   131.91   -10.21  1.80e+00  3.22e+01   5.7*sigma
   A  48  ALA  N
   A  48  ALA  CA
   A  48  ALA  CB        110.40   102.45     7.95  1.50e+00  2.81e+01   5.3*sigma
   A 138  HIS  CA
   A 138  HIS  CB
   A 138  HIS  CG        113.80   118.82    -5.02  1.00e+00  2.52e+01   5.0*sigma
   A 138  HIS  ND1
   A 138  HIS  CG
   A 138  HIS  CD2       106.10   110.77    -4.67  1.00e+00  2.18e+01   4.7*sigma
   A  48  ALA  N
   A  48  ALA  CA
   A  48  ALA  C         111.00   123.95   -12.95  2.80e+00  2.14e+01   4.6*sigma
   A  46  SER  CA
   A  46  SER  CB
   A  46  SER  OG        111.10   119.70    -8.60  2.00e+00  1.85e+01   4.3*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.39    -4.29  1.00e+00  1.84e+01   4.3*sigma
   A  43  HIS  ND1
   A  43  HIS  CG
   A  43  HIS  CD2       106.10   110.37    -4.27  1.00e+00  1.83e+01   4.3*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.27    -4.17  1.00e+00  1.74e+01   4.2*sigma
   A  82  THR  C
   A  83  THR  N
   A  83  THR  CA        121.70   129.17    -7.47  1.80e+00  1.72e+01   4.1*sigma
   A  51  ILE  CA
   A  51  ILE  C
   A  52  PRO  N         116.90   123.05    -6.15  1.50e+00  1.68e+01   4.1*sigma
   A  88  ASP  CA
   A  88  ASP  CB
   A  88  ASP  CG        112.60   108.54     4.06  1.00e+00  1.65e+01   4.1*sigma

  Min. delta:    0.001 (Z=  0.000)
  Max. delta:   13.441 (Z=  7.467)
  Mean delta:    2.102 (Z=  1.181)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 138  HIS  CA
   A 138  HIS  C
   A 139  HIS  N
   A 139  HIS  CA        180.00   149.23    30.77  5.00e+00  3.79e+01   6.2*sigma
   A 137  HIS  CA
   A 137  HIS  C
   A 138  HIS  N
   A 138  HIS  CA        180.00   151.66    28.34  5.00e+00  3.21e+01   5.7*sigma
   A  73  GLY  CA
   A  73  GLY  C
   A  74  ASP  N
   A  74  ASP  CA        180.00   152.88    27.12  5.00e+00  2.94e+01   5.4*sigma
   A  87  GLY  CA
   A  87  GLY  C
   A  88  ASP  N
   A  88  ASP  CA        180.00   154.02    25.98  5.00e+00  2.70e+01   5.2*sigma
   A 115  ALA  CA
   A 115  ALA  C
   A 116  ASP  N
   A 116  ASP  CA        180.00  -155.91   -24.09  5.00e+00  2.32e+01   4.8*sigma
   A  50  TYR  CA
   A  50  TYR  C
   A  51  ILE  N
   A  51  ILE  CA        180.00   158.76    21.24  5.00e+00  1.81e+01   4.2*sigma
   A 117  PRO  CA
   A 117  PRO  C
   A 118  ASP  N
   A 118  ASP  CA        180.00   159.89    20.11  5.00e+00  1.62e+01   4.0*sigma

  Min. delta:    0.007
  Max. delta:   87.059
  Mean delta:   11.364

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.001
  Max. delta:    0.344
  Mean delta:    0.100

                       ----------Planar groups----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.067
  Mean delta:    0.014

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

                       ----------Angle outliers----------                      

   A  48  ALA  HA , Angle CB-CA-HA, observed: 121.823, delta from target: -12.823

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.010   0.048   2241  Z= 0.554
    Angle     :  1.908  13.441   4077  Z= 0.863
    Chirality :  0.100   0.344    176
    Planarity :  0.011   0.067    326
    Dihedral  : 10.298  87.059    768
    Min Nonbonded Distance : 1.665
  
  Molprobity Statistics.
    All-atom Clashscore : 3.61
    Ramachandran Plot:
      Outliers :  4.38 %
      Allowed  : 12.41 %
      Favored  : 83.21 %
    Rotamer:
      Outliers :  0.81 %
      Allowed  :  0.00 %
      Favored  : 99.19 %
    Cbeta Deviations :  0.00 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.00 %
      Twisted Proline : 0.00 %
      Twisted General : 0.76 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -0.99 (0.72), residues: 137
    helix:  1.27 (0.63), residues: 69
    sheet:  None (None), residues: 0
    loop : -2.92 (0.69), residues: 68
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.004   0.001   HIS A 139 
   PHE   0.121   0.021   PHE A  15 
   TYR   0.123   0.021   TYR A 111 
   ARG   0.037   0.004   ARG A  21 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.004   0.001   HIS A 139 
   PHE   0.077   0.022   PHE A  15 
   TYR   0.097   0.021   TYR A 111 
   ARG   0.002   0.000   ARG A  21 

                     ----------Asn/Gln/His flips----------                     

  No backwards Asn/Gln/His sidechains found.

=================================== Summary ===================================


End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  atoms                 ideal   model   delta   sigma   slack  residual   deviation
   A 116  ASP  C
   A 117  PRO  N           1.34     1.45    -0.11  1.60e-02  4.73e+01   6.9*sigma
   A 116  ASP  CA
   A 116  ASP  CB          1.53     1.65    -0.12  2.00e-02  3.71e+01   6.1*sigma
   A 117  PRO  N
   A 117  PRO  CA          1.47     1.54    -0.08  1.50e-02  2.69e+01   5.2*sigma
   A 116  ASP  CA
   A 116  ASP  C           1.52     1.62    -0.09  2.10e-02  1.93e+01   4.4*sigma

  Min. delta:    0.000 (Z=  0.001)
  Max. delta:    0.122 (Z=  6.877)
  Mean delta:    0.017 (Z=  0.909)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 116  ASP  CA
   A 116  ASP  C
   A 117  PRO  N         116.90   138.24   -21.34  1.50e+00  2.02e+02  14.2*sigma
   A 116  ASP  CA
   A 116  ASP  C
   A 116  ASP  O         120.80   106.35    14.45  1.70e+00  7.23e+01   8.5*sigma
   A 117  PRO  C
   A 118  ASP  N
   A 118  ASP  CA        121.70   133.25   -11.55  1.80e+00  4.11e+01   6.4*sigma
   A 116  ASP  C
   A 117  PRO  N
   A 117  PRO  CD        125.00   101.21    23.79  4.10e+00  3.37e+01   5.8*sigma
   A 116  ASP  O
   A 116  ASP  C
   A 117  PRO  N         123.00   114.31     8.69  1.60e+00  2.95e+01   5.4*sigma
   A 117  PRO  N
   A 117  PRO  CD
   A 117  PRO  CG        103.20   111.02    -7.82  1.50e+00  2.72e+01   5.2*sigma
   A 117  PRO  C
   A 117  PRO  CA
   A 117  PRO  CB        110.10   100.56     9.54  1.90e+00  2.52e+01   5.0*sigma
   A  30  ILE  CA
   A  30  ILE  CB
   A  30  ILE  CG1       110.40   118.28    -7.88  1.70e+00  2.15e+01   4.6*sigma
   A 118  ASP  N
   A 118  ASP  CA
   A 118  ASP  C         111.00   123.87   -12.87  2.80e+00  2.11e+01   4.6*sigma
   A 113  LYS  CA
   A 113  LYS  C
   A 114  PRO  N         116.90   123.72    -6.82  1.50e+00  2.07e+01   4.5*sigma
   A  74  ASP  CA
   A  74  ASP  CB
   A  74  ASP  CG        112.60   108.13     4.47  1.00e+00  1.99e+01   4.5*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.46    -4.36  1.00e+00  1.90e+01   4.4*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.41    -4.31  1.00e+00  1.86e+01   4.3*sigma
   A 136  HIS  ND1
   A 136  HIS  CG
   A 136  HIS  CD2       106.10   110.39    -4.29  1.00e+00  1.84e+01   4.3*sigma
   A  43  HIS  ND1
   A  43  HIS  CG
   A  43  HIS  CD2       106.10   110.39    -4.29  1.00e+00  1.84e+01   4.3*sigma
   A  53  LEU  CA
   A  53  LEU  C
   A  54  PRO  N         116.90   123.26    -6.36  1.50e+00  1.80e+01   4.2*sigma
   A 134  HIS  ND1
   A 134  HIS  CG
   A 134  HIS  CD2       106.10   110.30    -4.20  1.00e+00  1.77e+01   4.2*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   110.29    -4.19  1.00e+00  1.75e+01   4.2*sigma
   A  72  ASN  OD1
   A  72  ASN  CG
   A  72  ASN  ND2       122.60   118.54     4.06  1.00e+00  1.65e+01   4.1*sigma

  Min. delta:    0.000 (Z=  0.000)
  Max. delta:   23.789 (Z= 14.227)
  Mean delta:    2.451 (Z=  1.313)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  47  ASP  CA
   A  47  ASP  C
   A  48  ALA  N
   A  48  ALA  CA        180.00    71.71   108.29  5.00e+00  4.69e+02  21.7*sigma
   A 116  ASP  CA
   A 116  ASP  C
   A 117  PRO  N
   A 117  PRO  CA        180.00   100.00    80.00  5.00e+00  2.56e+02  16.0*sigma
   A 119  LEU  CA
   A 119  LEU  C
   A 120  GLU  N
   A 120  GLU  CA        180.00   124.45    55.55  5.00e+00  1.23e+02  11.1*sigma
   A 117  PRO  CA
   A 117  PRO  C
   A 118  ASP  N
   A 118  ASP  CA        180.00   145.73    34.27  5.00e+00  4.70e+01   6.9*sigma
   A 118  ASP  CA
   A 118  ASP  C
   A 119  LEU  N
   A 119  LEU  CA        180.00   146.06    33.94  5.00e+00  4.61e+01   6.8*sigma
   A  51  ILE  CA
   A  51  ILE  C
   A  52  PRO  N
   A  52  PRO  CA        180.00  -151.66   -28.34  5.00e+00  3.21e+01   5.7*sigma
   A 122  ILE  CA
   A 122  ILE  C
   A 123  GLU  N
   A 123  GLU  CA        180.00   152.18    27.82  5.00e+00  3.10e+01   5.6*sigma
   A  48  ALA  CA
   A  48  ALA  C
   A  49  GLU  N
   A  49  GLU  CA        180.00   153.62    26.38  5.00e+00  2.78e+01   5.3*sigma
   A 132  LEU  CA
   A 132  LEU  C
   A 133  GLU  N
   A 133  GLU  CA        180.00   154.25    25.75  5.00e+00  2.65e+01   5.2*sigma
   A  89  TYR  CA
   A  89  TYR  C
   A  90  SER  N
   A  90  SER  CA        180.00   157.20    22.80  5.00e+00  2.08e+01   4.6*sigma
   A  46  SER  CA
   A  46  SER  C
   A  47  ASP  N
   A  47  ASP  CA        180.00   158.63    21.37  5.00e+00  1.83e+01   4.3*sigma
   A 120  GLU  CA
   A 120  GLU  C
   A 121  GLY  N
   A 121  GLY  CA        180.00   158.80    21.20  5.00e+00  1.80e+01   4.2*sigma
   A 124  ALA  CA
   A 124  ALA  C
   A 125  LYS  N
   A 125  LYS  CA        180.00   159.77    20.23  5.00e+00  1.64e+01   4.0*sigma

  Min. delta:    0.051
  Max. delta:  108.287
  Mean delta:   14.005

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.708
  Mean delta:    0.114

                       ----------Planar groups----------                       

  atoms                 rms_deltas   delta_max    residual   deviation
   A  91  TYR  CB
   A  91  TYR  CG
   A  91  TYR  CD1
   A  91  TYR  CD2
   A  91  TYR  CE1
   A  91  TYR  CE2
   A  91  TYR  CZ
   A  91  TYR  OH            0.116       0.094      268.59   4.7*sigma
   A  51  ILE  C
   A  52  PRO  N
   A  52  PRO  CA
   A  52  PRO  CD            0.136       0.236       29.71   4.7*sigma

  Min. delta:    0.000
  Max. delta:    0.177
  Mean delta:    0.021

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

                       ----------Angle outliers----------                      

   A 119  LEU  HA , Angle N-CA-HA, observed: 97.974, delta from target: 12.026
   A  99  LEU  HG , Angle CD2-CG-HG, observed: 121.060, delta from target: -13.060
   A 117  PRO  HA , Angle CB-CA-HA, observed: 125.223, delta from target: -16.223

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.012   0.122   2241  Z= 0.647
    Angle     :  2.110  23.789   4077  Z= 0.945
    Chirality :  0.114   0.708    176
    Planarity :  0.017   0.177    326
    Dihedral  : 11.975 108.287    768
    Min Nonbonded Distance : 1.653
  
  Molprobity Statistics.
    All-atom Clashscore : 4.51
    Ramachandran Plot:
      Outliers :  6.57 %
      Allowed  : 14.60 %
      Favored  : 78.83 %
    Rotamer:
      Outliers :  0.81 %
      Allowed  :  3.23 %
      Favored  : 95.97 %
    Cbeta Deviations :  0.76 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.00 %
      Twisted Proline : 14.29 %
      Twisted General : 3.05 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -1.41 (0.68), residues: 137
    helix:  1.50 (0.61), residues: 64
    sheet:  None (None), residues: 0
    loop : -3.48 (0.58), residues: 73
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.005   0.001   HIS A 139 
   PHE   0.081   0.019   PHE A  67 
   TYR   0.263   0.029   TYR A  91 
   ARG   0.025   0.005   ARG A  58 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.005   0.001   HIS A 139 
   PHE   0.042   0.014   PHE A  67 
   TYR   0.215   0.031   TYR A  91 
   ARG   0.012   0.002   ARG A  58 

                     ----------Asn/Gln/His flips----------                     

  No backwards Asn/Gln/His sidechains found.

=================================== Summary ===================================

        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'PTRANS': 7, 'TRANS': 131}

============================== Collecting inputs ==============================

  Ramachandran outliers =   4.38 %
                favored =  83.21 %
  Rotamer outliers      =   0.81 %
  C-beta deviations     =     0
  Clashscore            =   3.61
  RMS(bonds)            =   0.0104
  RMS(angles)           =   1.91
  MolProbity score      =   1.84

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py

============================== Collecting inputs ==============================


End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000 (Z=  0.001)
  Max. delta:    0.072 (Z=  3.599)
  Mean delta:    0.016 (Z=  0.823)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  72  ASN  CA
   A  72  ASN  CB
   A  72  ASN  CG        112.60   120.82    -8.22  1.00e+00  6.76e+01   8.2*sigma
   A 116  ASP  CA
   A 116  ASP  C
   A 117  PRO  N         116.90   127.28   -10.38  1.50e+00  4.79e+01   6.9*sigma
   A  73  GLY  C
   A  74  ASP  N
   A  74  ASP  CA        121.70   133.71   -12.01  1.80e+00  4.45e+01   6.7*sigma
   A  32  GLU  CB
   A  32  GLU  CG
   A  32  GLU  CD        112.60   123.36   -10.76  1.70e+00  4.01e+01   6.3*sigma
   A  51  ILE  CA
   A  51  ILE  C
   A  52  PRO  N         116.90   126.26    -9.36  1.50e+00  3.89e+01   6.2*sigma
   A  99  LEU  N
   A  99  LEU  CA
   A  99  LEU  CB        110.50   100.29    10.21  1.70e+00  3.61e+01   6.0*sigma
   A  97  SER  N
   A  97  SER  CA
   A  97  SER  CB        110.50   120.31    -9.81  1.70e+00  3.33e+01   5.8*sigma
   A  45  PHE  C
   A  46  SER  N
   A  46  SER  CA        121.70   130.66    -8.96  1.80e+00  2.48e+01   5.0*sigma
   A  88  ASP  CA
   A  88  ASP  CB
   A  88  ASP  CG        112.60   107.67     4.93  1.00e+00  2.43e+01   4.9*sigma
   A  53  LEU  CA
   A  53  LEU  C
   A  54  PRO  N         116.90   124.14    -7.24  1.50e+00  2.33e+01   4.8*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.71    -4.61  1.00e+00  2.13e+01   4.6*sigma
   A 116  ASP  O
   A 116  ASP  C
   A 117  PRO  N         123.00   115.63     7.37  1.60e+00  2.12e+01   4.6*sigma
   A 101  LYS  CA
   A 101  LYS  C
   A 102  PRO  N         116.90   123.78    -6.88  1.50e+00  2.10e+01   4.6*sigma
   A 134  HIS  ND1
   A 134  HIS  CG
   A 134  HIS  CD2       106.10   110.62    -4.52  1.00e+00  2.04e+01   4.5*sigma
   A  45  PHE  CA
   A  45  PHE  CB
   A  45  PHE  CG        113.80   109.30     4.50  1.00e+00  2.02e+01   4.5*sigma
   A  36  ASP  CA
   A  36  ASP  CB
   A  36  ASP  CG        112.60   108.15     4.45  1.00e+00  1.98e+01   4.4*sigma
   A  96  GLY  C
   A  97  SER  N
   A  97  SER  CA        121.70   129.70    -8.00  1.80e+00  1.98e+01   4.4*sigma
   A  77  ILE  CB
   A  77  ILE  CG1
   A  77  ILE  CD1       113.80   123.12    -9.32  2.10e+00  1.97e+01   4.4*sigma
   A  43  HIS  ND1
   A  43  HIS  CG
   A  43  HIS  CD2       106.10   110.45    -4.35  1.00e+00  1.89e+01   4.4*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.43    -4.33  1.00e+00  1.87e+01   4.3*sigma
   A   7  ASP  CA
   A   7  ASP  CB
   A   7  ASP  CG        112.60   108.45     4.15  1.00e+00  1.72e+01   4.1*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   110.23    -4.13  1.00e+00  1.70e+01   4.1*sigma
   A 136  HIS  ND1
   A 136  HIS  CG
   A 136  HIS  CD2       106.10   110.22    -4.12  1.00e+00  1.70e+01   4.1*sigma
   A 138  HIS  ND1
   A 138  HIS  CG
   A 138  HIS  CD2       106.10   110.21    -4.11  1.00e+00  1.69e+01   4.1*sigma
   A  77  ILE  CA
   A  77  ILE  CB
   A  77  ILE  CG2       110.50   117.48    -6.98  1.70e+00  1.69e+01   4.1*sigma

  Min. delta:    0.002 (Z=  0.001)
  Max. delta:   12.010 (Z=  8.220)
  Mean delta:    2.493 (Z=  1.370)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 117  PRO  CA
   A 117  PRO  C
   A 118  ASP  N
   A 118  ASP  CA        180.00   151.09    28.91  5.00e+00  3.34e+01   5.8*sigma
   A 129  ARG  CA
   A 129  ARG  C
   A 130  SER  N
   A 130  SER  CA        180.00   159.85    20.15  5.00e+00  1.62e+01   4.0*sigma

  Min. delta:    0.009
  Max. delta:   81.483
  Mean delta:   11.457

                       ----------Chiral volumes----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  88  ASP  CA
   A  88  ASP  N
   A  88  ASP  C
   A  88  ASP  CB          2.51     1.50     1.01  2.00e-01  2.56e+01   5.1*sigma

  Min. delta:    0.000
  Max. delta:    1.012
  Mean delta:    0.150

                       ----------Planar groups----------                       

  atoms                 rms_deltas   delta_max    residual   deviation
   A 111  TYR  CB
   A 111  TYR  CG
   A 111  TYR  CD1
   A 111  TYR  CD2
   A 111  TYR  CE1
   A 111  TYR  CE2
   A 111  TYR  CZ
   A 111  TYR  OH            0.052       0.098       55.03   4.9*sigma
   A  68  TYR  CB
   A  68  TYR  CG
   A  68  TYR  CD1
   A  68  TYR  CD2
   A  68  TYR  CE1
   A  68  TYR  CE2
   A  68  TYR  CZ
   A  68  TYR  OH            0.064       0.090       82.48   4.5*sigma
   A 105  TYR  CB
   A 105  TYR  CG
   A 105  TYR  CD1
   A 105  TYR  CD2
   A 105  TYR  CE1
   A 105  TYR  CE2
   A 105  TYR  CZ
   A 105  TYR  OH            0.046       0.087       41.84   4.3*sigma
   A  50  TYR  CB
   A  50  TYR  CG
   A  50  TYR  CD1
   A  50  TYR  CD2
   A  50  TYR  CE1
   A  50  TYR  CE2
   A  50  TYR  CZ
   A  50  TYR  OH            0.045       0.082       40.80   4.1*sigma

  Min. delta:    0.000
  Max. delta:    0.064
  Mean delta:    0.016

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

                       ----------Angle outliers----------                      

   A  93  LEU  HG , Angle CB-CG-HG, observed: 96.491, delta from target: 12.509
   A  99  LEU  HG , Angle CD1-CG-HG, observed: 120.574, delta from target: -12.574
   A  97  SER  HA , Angle N-CA-HA, observed: 95.545, delta from target: 14.455

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.011   0.072   2241  Z= 0.586
    Angle     :  2.182  14.455   4077  Z= 0.988
    Chirality :  0.150   1.012    176
    Planarity :  0.014   0.103    326
    Dihedral  : 10.380  81.483    768
    Min Nonbonded Distance : 1.658
  
  Molprobity Statistics.
    All-atom Clashscore : 7.22
    Ramachandran Plot:
      Outliers :  6.57 %
      Allowed  :  9.49 %
      Favored  : 83.94 %
    Rotamer:
      Outliers :  0.81 %
      Allowed  :  0.81 %
      Favored  : 98.39 %
    Cbeta Deviations :  5.30 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.76 %
      Twisted Proline : 0.00 %
      Twisted General : 0.00 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -0.74 (0.72), residues: 137
    helix:  1.73 (0.74), residues: 46
    sheet:  0.54 (1.30), residues: 12
    loop : -2.19 (0.70), residues: 79
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.006   0.002   HIS A  43 
   PHE   0.168   0.037   PHE A  45 
   TYR   0.220   0.036   TYR A  68 
   ARG   0.047   0.012   ARG A  21 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.006   0.002   HIS A  43 
   PHE   0.084   0.027   PHE A  45 
   TYR   0.110   0.029   TYR A  68 
   ARG   0.022   0.006   ARG A 127 

                     ----------Asn/Gln/His flips----------                     

  No backwards Asn/Gln/His sidechains found.

=================================== Summary ===================================

  Ramachandran outliers =   6.57 %
                favored =  78.83 %
  Rotamer outliers      =   0.81 %
  C-beta deviations     =     1
  Clashscore            =   4.51
  RMS(bonds)            =   0.0122
  RMS(angles)           =   2.11
  MolProbity score      =   1.98

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py

  Symmetric amino acids flipped
    Residue "A PHE   15": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   55": "OE1" <-> "OE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A PHE   67": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU   84": "OE1" <-> "OE2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU  120": "OE1" <-> "OE2"
    Residue "A GLU  123": "OE1" <-> "OE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""

End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  atoms                 ideal   model   delta   sigma   slack  residual   deviation
   A 112  VAL  C
   A 113  LYS  N           1.33     1.40    -0.07  1.40e-02  2.84e+01   5.3*sigma
   A 112  VAL  C
   A 112  VAL  O           1.23     1.14     0.09  2.00e-02  1.90e+01   4.4*sigma

  Min. delta:    0.000 (Z=  0.001)
  Max. delta:    0.087 (Z=  5.328)
  Mean delta:    0.016 (Z=  0.844)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 113  LYS  O
   A 113  LYS  C
   A 114  PRO  N         123.00   109.55    13.45  1.60e+00  7.07e+01   8.4*sigma
   A 113  LYS  CA
   A 113  LYS  C
   A 114  PRO  N         116.90   129.32   -12.42  1.50e+00  6.85e+01   8.3*sigma
   A  47  ASP  CA
   A  47  ASP  CB
   A  47  ASP  CG        112.60   105.53     7.07  1.00e+00  5.00e+01   7.1*sigma
   A 114  PRO  N
   A 114  PRO  CA
   A 114  PRO  C         112.10   128.83   -16.73  2.50e+00  4.48e+01   6.7*sigma
   A 112  VAL  CA
   A 112  VAL  CB
   A 112  VAL  CG1       110.40   119.08    -8.68  1.70e+00  2.61e+01   5.1*sigma
   A   9  LEU  CD1
   A   9  LEU  CG
   A   9  LEU  CD2       110.80   100.24    10.56  2.20e+00  2.30e+01   4.8*sigma
   A  97  SER  C
   A  98  SER  N
   A  98  SER  CA        121.70   129.55    -7.85  1.80e+00  1.90e+01   4.4*sigma
   A  29  ASP  CA
   A  29  ASP  CB
   A  29  ASP  CG        112.60   116.93    -4.33  1.00e+00  1.88e+01   4.3*sigma
   A  66  GLN  CA
   A  66  GLN  CB
   A  66  GLN  CG        114.10   122.70    -8.60  2.00e+00  1.85e+01   4.3*sigma
   A  53  LEU  CA
   A  53  LEU  C
   A  54  PRO  N         116.90   123.24    -6.34  1.50e+00  1.79e+01   4.2*sigma
   A  21  ARG  CA
   A  21  ARG  C
   A  22  PRO  N         116.90   123.21    -6.31  1.50e+00  1.77e+01   4.2*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.29    -4.19  1.00e+00  1.75e+01   4.2*sigma
   A 139  HIS  ND1
   A 139  HIS  CE1
   A 139  HIS  NE2       108.40   112.53    -4.13  1.00e+00  1.71e+01   4.1*sigma
   A   1  MET  CG
   A   1  MET  SD
   A   1  MET  CE        100.90    91.85     9.05  2.20e+00  1.69e+01   4.1*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.21    -4.11  1.00e+00  1.69e+01   4.1*sigma
   A 136  HIS  ND1
   A 136  HIS  CG
   A 136  HIS  CD2       106.10   110.19    -4.09  1.00e+00  1.67e+01   4.1*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   110.18    -4.08  1.00e+00  1.67e+01   4.1*sigma
   A 113  LYS  C
   A 114  PRO  N
   A 114  PRO  CD        125.00   108.27    16.73  4.10e+00  1.67e+01   4.1*sigma

  Min. delta:    0.001 (Z=  0.000)
  Max. delta:   16.734 (Z=  8.408)
  Mean delta:    2.316 (Z=  1.274)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 113  LYS  CA
   A 113  LYS  C
   A 114  PRO  N
   A 114  PRO  CA        180.00  -143.46   -36.54  5.00e+00  5.34e+01   7.3*sigma
   A 132  LEU  CA
   A 132  LEU  C
   A 133  GLU  N
   A 133  GLU  CA        180.00   153.88    26.12  5.00e+00  2.73e+01   5.2*sigma
   A 116  ASP  CA
   A 116  ASP  C
   A 117  PRO  N
   A 117  PRO  CA        180.00   154.02    25.98  5.00e+00  2.70e+01   5.2*sigma
   A 117  PRO  CA
   A 117  PRO  C
   A 118  ASP  N
   A 118  ASP  CA        180.00   156.66    23.34  5.00e+00  2.18e+01   4.7*sigma
   A 112  VAL  CA
   A 112  VAL  C
   A 113  LYS  N
   A 113  LYS  CA        180.00   157.74    22.26  5.00e+00  1.98e+01   4.5*sigma
   A  95  ASP  CA
   A  95  ASP  C
   A  96  GLY  N
   A  96  GLY  CA        180.00   159.19    20.81  5.00e+00  1.73e+01   4.2*sigma

  Min. delta:    0.058
  Max. delta:   64.964
  Mean delta:    9.901

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.001
  Max. delta:    0.628
  Mean delta:    0.108

                       ----------Planar groups----------                       

  atoms                 rms_deltas   delta_max    residual   deviation
   A  12  TYR  CB
   A  12  TYR  CG
   A  12  TYR  CD1
   A  12  TYR  CD2
   A  12  TYR  CE1
   A  12  TYR  CE2
   A  12  TYR  CZ
   A  12  TYR  OH            0.082       0.131      135.90   6.6*sigma
   A 113  LYS  C
   A 114  PRO  N
   A 114  PRO  CA
   A 114  PRO  CD            0.161       0.278       41.36   5.6*sigma
   A  15  PHE  CB
   A  15  PHE  CG
   A  15  PHE  CD1
   A  15  PHE  CD2
   A  15  PHE  CE1
   A  15  PHE  CE2
   A  15  PHE  CZ            0.058       0.092       57.91   4.6*sigma

  Min. delta:    0.000
  Max. delta:    0.161
  Mean delta:    0.019

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

                       ----------Angle outliers----------                      

   A 114  PRO  HA , Angle CB-CA-HA, observed: 123.189, delta from target: -14.189
   A 114  PRO  HA , Angle C-CA-HA, observed: 93.441, delta from target: 15.559

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.011   0.087   2241  Z= 0.601
    Angle     :  2.033  16.734   4077  Z= 0.920
    Chirality :  0.108   0.628    176
    Planarity :  0.015   0.161    326
    Dihedral  :  8.718  64.964    768
    Min Nonbonded Distance : 1.695
  
  Molprobity Statistics.
    All-atom Clashscore : 10.83
    Ramachandran Plot:
      Outliers :  4.38 %
      Allowed  :  8.76 %
      Favored  : 86.86 %
    Rotamer:
      Outliers :  0.81 %
      Allowed  :  0.81 %
      Favored  : 98.39 %
    Cbeta Deviations :  0.76 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.00 %
      Twisted Proline : 14.29 %
      Twisted General : 0.00 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -1.84 (0.67), residues: 137
    helix:  0.58 (0.61), residues: 62
    sheet:  None (None), residues: 0
    loop : -3.01 (0.63), residues: 75
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.005   0.002   HIS A 139 
   PHE   0.135   0.036   PHE A  15 
   TYR   0.249   0.025   TYR A  12 
   ARG   0.060   0.012   ARG A  21 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.005   0.002   HIS A 139 
   PHE   0.092   0.029   PHE A  15 
   TYR   0.150   0.022   TYR A  12 
   ARG   0.019   0.003   ARG A  21 

                     ----------Asn/Gln/His flips----------                     

   A  43  HIS

=================================== Summary ===================================

  Ramachandran outliers =   6.57 %
                favored =  83.94 %
  Rotamer outliers      =   0.81 %
  C-beta deviations     =     7
  Clashscore            =   7.22
  RMS(bonds)            =   0.0114
  RMS(angles)           =   2.18
  MolProbity score      =   2.08

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py

============================== Collecting inputs ==============================

  Time building chain proxies: 1.12, per 1000 atoms: 0.51
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (61.025, 48.815, 86.36, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.
Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  

  Ramachandran outliers =   4.38 %
                favored =  86.86 %
  Rotamer outliers      =   0.81 %
  C-beta deviations     =     1
  Clashscore            =  10.83
  RMS(bonds)            =   0.0112
  RMS(angles)           =   2.03
  MolProbity score      =   2.18

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py

============================== Collecting inputs ==============================


============================== Collecting inputs ==============================

Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  


============================== Collecting inputs ==============================


  Symmetric amino acids flipped
    Residue "A GLU    8": "OE1" <-> "OE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ASP   29": "OD1" <-> "OD2"
    Residue "A ASP   36": "OD1" <-> "OD2"
    Residue "A ASP   47": "OD1" <-> "OD2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   75": "OE1" <-> "OE2"
    Residue "A TYR   89": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU  133": "OE1" <-> "OE2"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""

============================== Collecting inputs ==============================


============================== Collecting inputs ==============================


============================== Collecting inputs ==============================


============================== Collecting inputs ==============================

        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'PTRANS': 7, 'TRANS': 131}
Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  


  Symmetric amino acids flipped
    Residue "A GLU    8": "OE1" <-> "OE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   24": "OE1" <-> "OE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A PHE   67": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU   75": "OE1" <-> "OE2"
    Residue "A TYR   89": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR   91": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""
Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  


  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 0.80
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 0.92 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  

Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  

  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 127
        1.23 -     1.43: 338
        1.43 -     1.62: 666
        1.62 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" CE1 HIS A 139 "
       model="   1" pdb=" NE2 HIS A 139 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.18e+01
  bond model="   1" pdb=" CE1 HIS A 135 "
       model="   1" pdb=" NE2 HIS A 135 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.18e+01
  bond model="   1" pdb=" CE1 HIS A 134 "
       model="   1" pdb=" NE2 HIS A 134 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.17e+01
  bond model="   1" pdb=" CE1 HIS A 138 "
       model="   1" pdb=" NE2 HIS A 138 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.13e+01
  bond model="   1" pdb=" CE1 HIS A 136 "
       model="   1" pdb=" NE2 HIS A 136 "
    ideal  model  delta    sigma   weight residual
    1.321  1.354 -0.033 1.00e-02 1.00e+04 1.11e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       97.06 -   103.81: 30
      103.81 -   110.56: 2230
      110.56 -   117.31: 813
      117.31 -   124.06: 896
      124.06 -   130.81: 108
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" CA  ASP A  74 "
        model="   1" pdb=" CB  ASP A  74 "
        model="   1" pdb=" CG  ASP A  74 "
      ideal   model   delta    sigma   weight residual
     112.60  121.03   -8.43 1.00e+00 1.00e+00 7.10e+01
  angle model="   1" pdb=" CA  ASP A 103 "
        model="   1" pdb=" CB  ASP A 103 "
        model="   1" pdb=" CG  ASP A 103 "
      ideal   model   delta    sigma   weight residual
     112.60  119.02   -6.42 1.00e+00 1.00e+00 4.12e+01
  angle model="   1" pdb=" CA  ASP A  74 "
        model="   1" pdb=" C   ASP A  74 "
        model="   1" pdb=" N   GLU A  75 "
      ideal   model   delta    sigma   weight residual
     116.20  128.05  -11.85 2.00e+00 2.50e-01 3.51e+01
  angle model="   1" pdb=" CA  ILE A  51 "
        model="   1" pdb=" C   ILE A  51 "
        model="   1" pdb=" N   PRO A  52 "
      ideal   model   delta    sigma   weight residual
     116.90  125.11   -8.21 1.50e+00 4.44e-01 2.99e+01
  angle model="   1" pdb=" CA  SER A  98 "
        model="   1" pdb=" CB  SER A  98 "
        model="   1" pdb=" OG  SER A  98 "
      ideal   model   delta    sigma   weight residual
     111.10  120.22   -9.12 2.00e+00 2.50e-01 2.08e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    10.48: 927
       10.48 -    20.97: 71
       20.97 -    31.45: 16
       31.45 -    41.93: 11
       41.93 -    52.41: 7
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" CA  GLU A 123 "
           model="   1" pdb=" C   GLU A 123 "
           model="   1" pdb=" N   ALA A 124 "
           model="   1" pdb=" CA  ALA A 124 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  160.12   19.88     0      5.00e+00 4.00e-02 1.58e+01
  dihedral model="   1" pdb=" CA  PRO A 117 "
           model="   1" pdb=" C   PRO A 117 "
           model="   1" pdb=" N   ASP A 118 "
           model="   1" pdb=" CA  ASP A 118 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  161.09   18.91     0      5.00e+00 4.00e-02 1.43e+01
  dihedral model="   1" pdb=" N   SER A  98 "
           model="   1" pdb=" C   SER A  98 "
           model="   1" pdb=" CA  SER A  98 "
           model="   1" pdb=" CB  SER A  98 "
      ideal   model   delta  harmonic     sigma   weight residual
     122.80  131.24   -8.44     0      2.50e+00 1.60e-01 1.14e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.000 -    0.084: 126
       0.084 -    0.168: 34
       0.168 -    0.252: 12
       0.252 -    0.336: 3
       0.336 -    0.420: 1
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CB  ILE A  77 "
            model="   1" pdb=" CA  ILE A  77 "
            model="   1" pdb=" CG1 ILE A  77 "
            model="   1" pdb=" CG2 ILE A  77 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.64    2.22    0.42 2.00e-01 2.50e+01 4.42e+00
  chirality model="   1" pdb=" CA  SER A  98 "
            model="   1" pdb=" N   SER A  98 "
            model="   1" pdb=" C   SER A  98 "
            model="   1" pdb=" CB  SER A  98 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.18    0.33 2.00e-01 2.50e+01 2.78e+00
  chirality model="   1" pdb=" CA  SER A  17 "
            model="   1" pdb=" N   SER A  17 "
            model="   1" pdb=" C   SER A  17 "
            model="   1" pdb=" CB  SER A  17 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.23    0.28 2.00e-01 2.50e+01 2.01e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  12 "   -0.002 2.00e-02 2.50e+03   4.00e-02 4.80e+01
        model="   1" pdb=" CG  TYR A  12 "    0.019 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  12 "    0.024 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  12 "   -0.017 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  12 "   -0.028 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  12 "    0.013 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  12 "    0.007 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  12 "    0.031 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  12 "    0.062 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  12 "   -0.060 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  12 "   -0.085 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  12 "    0.037 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  50 "   -0.095 2.00e-02 2.50e+03   3.94e-02 4.66e+01
        model="   1" pdb=" CG  TYR A  50 "   -0.006 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  50 "    0.022 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  50 "    0.018 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  50 "    0.006 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  50 "    0.010 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  50 "   -0.010 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  50 "   -0.061 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  50 "    0.053 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  50 "    0.041 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  50 "    0.006 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  50 "    0.017 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A 111 "   -0.080 2.00e-02 2.50e+03   3.86e-02 4.48e+01
        model="   1" pdb=" CG  TYR A 111 "   -0.011 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A 111 "    0.009 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A 111 "    0.022 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A 111 "    0.019 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A 111 "    0.007 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A 111 "   -0.004 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A 111 "   -0.075 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A 111 "    0.017 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A 111 "    0.053 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A 111 "    0.040 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A 111 "    0.004 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.76 -     2.33: 462
        2.33 -     2.90: 5188
        2.90 -     3.46: 5180
        3.46 -     4.03: 6751
        4.03 -     4.60: 9973
  Nonbonded interactions: 27554
  Sorted by model distance:
  nonbonded model="   1" pdb=" HZ3 LYS A  10 "
            model="   1" pdb=" OD1 ASP A  23 "
     model   vdw
     1.760 1.850
  nonbonded model="   1" pdb=" OE1 GLU A   8 "
            model="   1" pdb="HH11 ARG A  58 "
     model   vdw
     1.775 1.850
  nonbonded model="   1" pdb=" HB2 LEU A   3 "
            model="   1" pdb="HD12 LEU A  61 "
     model   vdw
     1.779 2.440
  nonbonded model="   1" pdb=" OE2 GLU A  55 "
            model="   1" pdb="HH21 ARG A  58 "
     model   vdw
     1.785 1.850
  nonbonded model="   1" pdb="HH21 ARG A 129 "
            model="   1" pdb=" OE1 GLU A 133 "
     model   vdw
     1.796 1.850
  ... (remaining 27549 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.
  Time building chain proxies: 1.13, per 1000 atoms: 0.51
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (66.288, 37.375, 91.874, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'PTRANS': 7, 'TRANS': 131}
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'PTRANS': 7, 'TRANS': 131}
Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  


  Symmetric amino acids flipped
    Residue "A GLU    8": "OE1" <-> "OE2"
    Residue "A GLU   16": "OE1" <-> "OE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   24": "OE1" <-> "OE2"
    Residue "A PHE   45": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR   50": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A TYR   81": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ASP  116": "OD1" <-> "OD2"
    Residue "A GLU  123": "OE1" <-> "OE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""

============================== Collecting inputs ==============================


============================== Collecting inputs ==============================


============================== Collecting inputs ==============================

Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  

  Time building chain proxies: 0.65, per 1000 atoms: 0.29
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (66.288, 37.375, 91.874, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.

============================== Collecting inputs ==============================


============================== Collecting inputs ==============================

Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  

Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  


============================== Collecting inputs ==============================


  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 1.21
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 1.35 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Time building chain proxies: 1.17, per 1000 atoms: 0.53
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (106.724, 52.973, 57.911, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.

============================== Collecting inputs ==============================


============================== Collecting inputs ==============================


  Symmetric amino acids flipped
    Residue "A GLU    8": "OE1" <-> "OE2"
    Residue "A TYR   12": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   24": "OE1" <-> "OE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A PHE   67": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ASP   74": "OD1" <-> "OD2"
    Residue "A GLU   75": "OE1" <-> "OE2"
    Residue "A TYR   81": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU   84": "OE1" <-> "OE2"
    Residue "A TYR   91": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU  123": "OE1" <-> "OE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""
Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  

Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  

  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 130
        1.23 -     1.43: 336
        1.43 -     1.63: 665
        1.63 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" CE1 HIS A 139 "
       model="   1" pdb=" NE2 HIS A 139 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.17e+01
  bond model="   1" pdb=" CE1 HIS A 138 "
       model="   1" pdb=" NE2 HIS A 138 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.16e+01
  bond model="   1" pdb=" CE1 HIS A 135 "
       model="   1" pdb=" NE2 HIS A 135 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.16e+01
  bond model="   1" pdb=" CE1 HIS A 136 "
       model="   1" pdb=" NE2 HIS A 136 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.15e+01
  bond model="   1" pdb=" CE1 HIS A 134 "
       model="   1" pdb=" NE2 HIS A 134 "
    ideal  model  delta    sigma   weight residual
    1.321  1.354 -0.033 1.00e-02 1.00e+04 1.12e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       96.56 -   103.84: 31
      103.84 -   111.12: 2359
      111.12 -   118.40: 766
      118.40 -   125.68: 892
      125.68 -   132.97: 29
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" CA  LYS A 101 "
        model="   1" pdb=" C   LYS A 101 "
        model="   1" pdb=" N   PRO A 102 "
      ideal   model   delta    sigma   weight residual
     116.90  126.45   -9.55 1.50e+00 4.44e-01 4.05e+01
  angle model="   1" pdb=" C   HIS A 138 "
        model="   1" pdb=" N   HIS A 139 "
        model="   1" pdb=" CA  HIS A 139 "
      ideal   model   delta    sigma   weight residual
     121.70  132.97  -11.27 1.80e+00 3.09e-01 3.92e+01
  angle model="   1" pdb=" CA  ILE A  51 "
        model="   1" pdb=" C   ILE A  51 "
        model="   1" pdb=" N   PRO A  52 "
      ideal   model   delta    sigma   weight residual
     116.90  124.87   -7.97 1.50e+00 4.44e-01 2.82e+01
  angle model="   1" pdb=" CA  ASP A  29 "
        model="   1" pdb=" CB  ASP A  29 "
        model="   1" pdb=" CG  ASP A  29 "
      ideal   model   delta    sigma   weight residual
     112.60  117.86   -5.26 1.00e+00 1.00e+00 2.77e+01
  angle model="   1" pdb=" CA  ASP A  88 "
        model="   1" pdb=" CB  ASP A  88 "
        model="   1" pdb=" CG  ASP A  88 "
      ideal   model   delta    sigma   weight residual
     112.60  107.43    5.17 1.00e+00 1.00e+00 2.67e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    16.69: 978
       16.69 -    33.38: 38
       33.38 -    50.07: 10
       50.07 -    66.75: 5
       66.75 -    83.44: 1
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" CA  ASP A 116 "
           model="   1" pdb=" C   ASP A 116 "
           model="   1" pdb=" N   PRO A 117 "
           model="   1" pdb=" CA  PRO A 117 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  142.49   37.51     0      5.00e+00 4.00e-02 5.63e+01
  dihedral model="   1" pdb=" CA  ASP A  88 "
           model="   1" pdb=" C   ASP A  88 "
           model="   1" pdb=" N   TYR A  89 "
           model="   1" pdb=" CA  TYR A  89 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  145.75   34.25     0      5.00e+00 4.00e-02 4.69e+01
  dihedral model="   1" pdb=" CA  ALA A 115 "
           model="   1" pdb=" C   ALA A 115 "
           model="   1" pdb=" N   ASP A 116 "
           model="   1" pdb=" CA  ASP A 116 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  156.02   23.98     0      5.00e+00 4.00e-02 2.30e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.001 -    0.082: 125
       0.082 -    0.162: 37
       0.162 -    0.243: 7
       0.243 -    0.324: 5
       0.324 -    0.405: 2
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  TYR A  89 "
            model="   1" pdb=" N   TYR A  89 "
            model="   1" pdb=" C   TYR A  89 "
            model="   1" pdb=" CB  TYR A  89 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.11    0.41 2.00e-01 2.50e+01 4.10e+00
  chirality model="   1" pdb=" CA  THR A  34 "
            model="   1" pdb=" N   THR A  34 "
            model="   1" pdb=" C   THR A  34 "
            model="   1" pdb=" CB  THR A  34 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.53    2.16    0.37 2.00e-01 2.50e+01 3.33e+00
  chirality model="   1" pdb=" CA  PRO A 102 "
            model="   1" pdb=" N   PRO A 102 "
            model="   1" pdb=" C   PRO A 102 "
            model="   1" pdb=" CB  PRO A 102 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.72    2.41    0.31 2.00e-01 2.50e+01 2.45e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  PHE A  15 "    0.169 2.00e-02 2.50e+03   7.51e-02 1.69e+02
        model="   1" pdb=" CG  PHE A  15 "   -0.025 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 PHE A  15 "   -0.048 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 PHE A  15 "   -0.030 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 PHE A  15 "   -0.007 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 PHE A  15 "   -0.025 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  PHE A  15 "    0.047 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 PHE A  15 "   -0.091 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 PHE A  15 "   -0.036 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 PHE A  15 "   -0.017 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 PHE A  15 "   -0.070 2.00e-02 2.50e+03
        model="   1" pdb=" HZ  PHE A  15 "    0.133 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  68 "   -0.049 2.00e-02 2.50e+03   4.48e-02 6.01e+01
        model="   1" pdb=" CG  TYR A  68 "    0.034 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  68 "    0.021 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  68 "    0.019 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  68 "   -0.029 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  68 "   -0.026 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  68 "   -0.036 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  68 "    0.087 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  68 "    0.046 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  68 "    0.039 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  68 "   -0.057 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  68 "   -0.048 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" C   ASP A 116 "    0.116 5.00e-02 4.00e+02   1.75e-01 4.90e+01
        model="   1" pdb=" N   PRO A 117 "   -0.303 5.00e-02 4.00e+02
        model="   1" pdb=" CA  PRO A 117 "    0.096 5.00e-02 4.00e+02
        model="   1" pdb=" CD  PRO A 117 "    0.091 5.00e-02 4.00e+02
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.71 -     2.29: 301
        2.29 -     2.87: 4975
        2.87 -     3.44: 4952
        3.44 -     4.02: 6374
        4.02 -     4.60: 9400
  Nonbonded interactions: 26002
  Sorted by model distance:
  nonbonded model="   1" pdb=" OE2 GLU A  24 "
            model="   1" pdb=" HZ2 LYS A  27 "
     model   vdw
     1.712 1.850
  nonbonded model="   1" pdb=" HZ3 LYS A  10 "
            model="   1" pdb=" OD1 ASP A  23 "
     model   vdw
     1.745 1.850
  nonbonded model="   1" pdb=" OE2 GLU A  55 "
            model="   1" pdb="HH21 ARG A  58 "
     model   vdw
     1.784 1.850
  nonbonded model="   1" pdb="HE21 GLN A  28 "
            model="   1" pdb=" OE2 GLU A  32 "
     model   vdw
     1.812 1.850
  nonbonded model="   1" pdb=" OE1 GLU A  55 "
            model="   1" pdb=" HE  ARG A  58 "
     model   vdw
     1.889 1.850
  ... (remaining 25997 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Symmetric amino acids flipped
    Residue "A GLU    8": "OE1" <-> "OE2"
    Residue "A TYR   12": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A PHE   15": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   24": "OE1" <-> "OE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A TYR   68": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU   75": "OE1" <-> "OE2"
    Residue "A TYR   89": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR   91": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ASP   95": "OD1" <-> "OD2"
    Residue "A ASP  103": "OD1" <-> "OD2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""

============================== Collecting inputs ==============================


============================== Collecting inputs ==============================


  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 0.98
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 1.10 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'PTRANS': 7, 'TRANS': 131}

============================== Collecting inputs ==============================


============================== Collecting inputs ==============================


  Symmetric amino acids flipped
    Residue "A GLU    8": "OE1" <-> "OE2"
    Residue "A GLU   16": "OE1" <-> "OE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   24": "OE1" <-> "OE2"
    Residue "A PHE   45": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR   50": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   84": "OE1" <-> "OE2"
    Residue "A TYR   89": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR   91": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""
Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  

  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 118
        1.23 -     1.43: 350
        1.43 -     1.63: 663
        1.63 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" CD  ARG A 127 "
       model="   1" pdb=" NE  ARG A 127 "
    ideal  model  delta    sigma   weight residual
    1.458  1.506 -0.048 1.40e-02 5.10e+03 1.17e+01
  bond model="   1" pdb=" CA  MET A   1 "
       model="   1" pdb=" C   MET A   1 "
    ideal  model  delta    sigma   weight residual
    1.525  1.455  0.070 2.10e-02 2.27e+03 1.11e+01
  bond model="   1" pdb=" CE1 HIS A 139 "
       model="   1" pdb=" NE2 HIS A 139 "
    ideal  model  delta    sigma   weight residual
    1.321  1.354 -0.033 1.00e-02 1.00e+04 1.08e+01
  bond model="   1" pdb=" CE1 HIS A 137 "
       model="   1" pdb=" NE2 HIS A 137 "
    ideal  model  delta    sigma   weight residual
    1.321  1.353 -0.032 1.00e-02 1.00e+04 1.05e+01
  bond model="   1" pdb=" CE1 HIS A 135 "
       model="   1" pdb=" NE2 HIS A 135 "
    ideal  model  delta    sigma   weight residual
    1.321  1.353 -0.032 1.00e-02 1.00e+04 1.04e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       94.82 -   102.39: 15
      102.39 -   109.96: 2067
      109.96 -   117.53: 1013
      117.53 -   125.11: 928
      125.11 -   132.68: 54
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" CA  PHE A  45 "
        model="   1" pdb=" CB  PHE A  45 "
        model="   1" pdb=" CG  PHE A  45 "
      ideal   model   delta    sigma   weight residual
     113.80  105.38    8.42 1.00e+00 1.00e+00 7.09e+01
  angle model="   1" pdb=" CA  ASP A 116 "
        model="   1" pdb=" C   ASP A 116 "
        model="   1" pdb=" N   PRO A 117 "
      ideal   model   delta    sigma   weight residual
     116.90  128.04  -11.14 1.50e+00 4.44e-01 5.51e+01
  angle model="   1" pdb=" N   THR A   5 "
        model="   1" pdb=" CA  THR A   5 "
        model="   1" pdb=" CB  THR A   5 "
      ideal   model   delta    sigma   weight residual
     111.50  119.95   -8.45 1.70e+00 3.46e-01 2.47e+01
  angle model="   1" pdb=" CA  ILE A  51 "
        model="   1" pdb=" C   ILE A  51 "
        model="   1" pdb=" N   PRO A  52 "
      ideal   model   delta    sigma   weight residual
     116.90  124.21   -7.31 1.50e+00 4.44e-01 2.37e+01
  angle model="   1" pdb=" CA  LYS A 113 "
        model="   1" pdb=" C   LYS A 113 "
        model="   1" pdb=" N   PRO A 114 "
      ideal   model   delta    sigma   weight residual
     116.90  124.07   -7.17 1.50e+00 4.44e-01 2.29e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    15.44: 979
       15.44 -    30.88: 36
       30.88 -    46.31: 9
       46.31 -    61.75: 6
       61.75 -    77.19: 2
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" CA  ARG A  21 "
           model="   1" pdb=" C   ARG A  21 "
           model="   1" pdb=" N   PRO A  22 "
           model="   1" pdb=" CA  PRO A  22 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  155.32   24.68     0      5.00e+00 4.00e-02 2.44e+01
  dihedral model="   1" pdb=" CA  LYS A  85 "
           model="   1" pdb=" C   LYS A  85 "
           model="   1" pdb=" N   ILE A  86 "
           model="   1" pdb=" CA  ILE A  86 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  159.86   20.14     0      5.00e+00 4.00e-02 1.62e+01
  dihedral model="   1" pdb=" CA  PHE A  45 "
           model="   1" pdb=" C   PHE A  45 "
           model="   1" pdb=" N   SER A  46 "
           model="   1" pdb=" CA  SER A  46 "
      ideal   model   delta  harmonic     sigma   weight residual
    -180.00 -161.37  -18.63     0      5.00e+00 4.00e-02 1.39e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.001 -    0.056: 87
       0.056 -    0.111: 52
       0.111 -    0.165: 18
       0.165 -    0.220: 14
       0.220 -    0.275: 5
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  PHE A  45 "
            model="   1" pdb=" N   PHE A  45 "
            model="   1" pdb=" C   PHE A  45 "
            model="   1" pdb=" CB  PHE A  45 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.24    0.27 2.00e-01 2.50e+01 1.89e+00
  chirality model="   1" pdb=" CA  THR A   5 "
            model="   1" pdb=" N   THR A   5 "
            model="   1" pdb=" C   THR A   5 "
            model="   1" pdb=" CB  THR A   5 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.53    2.25    0.27 2.00e-01 2.50e+01 1.85e+00
  chirality model="   1" pdb=" CA  PRO A  54 "
            model="   1" pdb=" N   PRO A  54 "
            model="   1" pdb=" C   PRO A  54 "
            model="   1" pdb=" CB  PRO A  54 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.72    2.45    0.27 2.00e-01 2.50e+01 1.81e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  81 "   -0.105 2.00e-02 2.50e+03   6.31e-02 1.19e+02
        model="   1" pdb=" CG  TYR A  81 "    0.059 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  81 "    0.016 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  81 "    0.052 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  81 "   -0.001 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  81 "   -0.037 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  81 "   -0.001 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  81 "    0.047 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  81 "   -0.002 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  81 "    0.108 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  81 "   -0.013 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  81 "   -0.122 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A 105 "    0.016 2.00e-02 2.50e+03   4.93e-02 7.30e+01
        model="   1" pdb=" CG  TYR A 105 "    0.045 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A 105 "   -0.026 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A 105 "    0.022 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A 105 "    0.030 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A 105 "   -0.019 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A 105 "    0.026 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A 105 "   -0.008 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A 105 "   -0.111 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A 105 "    0.033 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A 105 "    0.068 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A 105 "   -0.076 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  68 "   -0.048 2.00e-02 2.50e+03   4.21e-02 5.32e+01
        model="   1" pdb=" CG  TYR A  68 "   -0.049 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  68 "    0.011 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  68 "   -0.000 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  68 "    0.005 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  68 "    0.016 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  68 "   -0.047 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  68 "   -0.068 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  68 "    0.053 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  68 "    0.021 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  68 "    0.038 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  68 "    0.068 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.74 -     2.31: 374
        2.31 -     2.88: 5149
        2.88 -     3.46: 5097
        3.46 -     4.03: 6508
        4.03 -     4.60: 9884
  Nonbonded interactions: 27012
  Sorted by model distance:
  nonbonded model="   1" pdb="HH21 ARG A  21 "
            model="   1" pdb=" HB1 ALA A  69 "
     model   vdw
     1.742 2.270
  nonbonded model="   1" pdb=" H3  MET A   1 "
            model="   1" pdb=" O   SER A  46 "
     model   vdw
     1.759 1.850
  nonbonded model="   1" pdb=" OE2 GLU A  16 "
            model="   1" pdb=" HZ2 LYS A  19 "
     model   vdw
     1.766 1.850
  nonbonded model="   1" pdb=" OD2 ASP A  36 "
            model="   1" pdb=" HZ2 LYS A  40 "
     model   vdw
     1.793 1.850
  nonbonded model="   1" pdb=" HZ3 LYS A  85 "
            model="   1" pdb=" OE1 GLN A 100 "
     model   vdw
     1.843 1.850
  ... (remaining 27007 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.
Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  

Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  

        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'CIS': 1, 'PTRANS': 7, 'TRANS': 130}
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'PTRANS': 7, 'TRANS': 131}
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'PCIS': 1, 'PTRANS': 6, 'TRANS': 131}
  Time building chain proxies: 1.19, per 1000 atoms: 0.54
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (92.69, 64.799, 52.019, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.
Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  

Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  

Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  


  Symmetric amino acids flipped
    Residue "A GLU    8": "OE1" <-> "OE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A PHE   67": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU   84": "OE1" <-> "OE2"
    Residue "A TYR   89": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR   91": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ASP  116": "OD1" <-> "OD2"
    Residue "A GLU  120": "OE1" <-> "OE2"
    Residue "A GLU  123": "OE1" <-> "OE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""
Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  


============================== Collecting inputs ==============================

  Time building chain proxies: 0.68, per 1000 atoms: 0.31
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (55.529, 36.341, 91.08, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.

  Symmetric amino acids flipped
    Residue "A GLU    8": "OE1" <-> "OE2"
    Residue "A TYR   12": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU   16": "OE1" <-> "OE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   24": "OE1" <-> "OE2"
    Residue "A PHE   45": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A TYR   68": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ASP   74": "OD1" <-> "OD2"
    Residue "A TYR   81": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU   84": "OE1" <-> "OE2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ASP  118": "OD1" <-> "OD2"
    Residue "A GLU  120": "OE1" <-> "OE2"
    Residue "A GLU  123": "OE1" <-> "OE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""
Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  


============================== Collecting inputs ==============================

  Time building chain proxies: 0.61, per 1000 atoms: 0.28
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (74.804, 89.311, 66.985, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.

  Symmetric amino acids flipped
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   24": "OE1" <-> "OE2"
    Residue "A GLU   32": "OE1" <-> "OE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A PHE   67": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR   91": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ASP   95": "OD1" <-> "OD2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU  123": "OE1" <-> "OE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU  133": "OE1" <-> "OE2"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""

  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 0.62
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 0.70 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Time building chain proxies: 1.13, per 1000 atoms: 0.51
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (72.522, 75.015, 83.83, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.

  Symmetric amino acids flipped
    Residue "A GLU    8": "OE1" <-> "OE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   24": "OE1" <-> "OE2"
    Residue "A GLU   32": "OE1" <-> "OE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A TYR   68": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU   75": "OE1" <-> "OE2"
    Residue "A TYR   81": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ASP   88": "OD1" <-> "OD2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""

============================== Collecting inputs ==============================

  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 125
        1.23 -     1.43: 342
        1.43 -     1.62: 664
        1.62 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" CE1 HIS A 137 "
       model="   1" pdb=" NE2 HIS A 137 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.18e+01
  bond model="   1" pdb=" CE1 HIS A 134 "
       model="   1" pdb=" NE2 HIS A 134 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.16e+01
  bond model="   1" pdb=" CE1 HIS A 139 "
       model="   1" pdb=" NE2 HIS A 139 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.16e+01
  bond model="   1" pdb=" CE1 HIS A 138 "
       model="   1" pdb=" NE2 HIS A 138 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.16e+01
  bond model="   1" pdb=" CE1 HIS A 135 "
       model="   1" pdb=" NE2 HIS A 135 "
    ideal  model  delta    sigma   weight residual
    1.321  1.354 -0.033 1.00e-02 1.00e+04 1.12e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       96.83 -   103.75: 30
      103.75 -   110.67: 2252
      110.67 -   117.59: 800
      117.59 -   124.50: 934
      124.50 -   131.42: 61
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" CA  ASP A  74 "
        model="   1" pdb=" CB  ASP A  74 "
        model="   1" pdb=" CG  ASP A  74 "
      ideal   model   delta    sigma   weight residual
     112.60  118.81   -6.21 1.00e+00 1.00e+00 3.86e+01
  angle model="   1" pdb=" N   PRO A 117 "
        model="   1" pdb=" CA  PRO A 117 "
        model="   1" pdb=" C   PRO A 117 "
      ideal   model   delta    sigma   weight residual
     112.10  125.41  -13.31 2.50e+00 1.60e-01 2.83e+01
  angle model="   1" pdb=" C   ALA A 115 "
        model="   1" pdb=" N   ASP A 116 "
        model="   1" pdb=" CA  ASP A 116 "
      ideal   model   delta    sigma   weight residual
     121.70  130.89   -9.19 1.80e+00 3.09e-01 2.61e+01
  angle model="   1" pdb=" CA  LYS A 101 "
        model="   1" pdb=" C   LYS A 101 "
        model="   1" pdb=" N   PRO A 102 "
      ideal   model   delta    sigma   weight residual
     116.90  124.28   -7.38 1.50e+00 4.44e-01 2.42e+01
  angle model="   1" pdb=" CB  PRO A 117 "
        model="   1" pdb=" CA  PRO A 117 "
        model="   1" pdb=" HA  PRO A 117 "
      ideal   model   delta    sigma   weight residual
     109.00  123.34  -14.34 3.00e+00 1.11e-01 2.29e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    10.62: 925
       10.62 -    21.24: 68
       21.24 -    31.85: 24
       31.85 -    42.47: 8
       42.47 -    53.09: 7
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" CA  PRO A 114 "
           model="   1" pdb=" C   PRO A 114 "
           model="   1" pdb=" N   ALA A 115 "
           model="   1" pdb=" CA  ALA A 115 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  140.21   39.79     0      5.00e+00 4.00e-02 6.33e+01
  dihedral model="   1" pdb=" CA  PRO A 117 "
           model="   1" pdb=" C   PRO A 117 "
           model="   1" pdb=" N   ASP A 118 "
           model="   1" pdb=" CA  ASP A 118 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  142.91   37.09     0      5.00e+00 4.00e-02 5.50e+01
  dihedral model="   1" pdb=" CA  ASP A 116 "
           model="   1" pdb=" C   ASP A 116 "
           model="   1" pdb=" N   PRO A 117 "
           model="   1" pdb=" CA  PRO A 117 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00 -158.89  -21.11     0      5.00e+00 4.00e-02 1.78e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.000 -    0.082: 128
       0.082 -    0.163: 33
       0.163 -    0.245: 10
       0.245 -    0.327: 3
       0.327 -    0.408: 2
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  PRO A 117 "
            model="   1" pdb=" N   PRO A 117 "
            model="   1" pdb=" C   PRO A 117 "
            model="   1" pdb=" CB  PRO A 117 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.72    2.31    0.41 2.00e-01 2.50e+01 4.17e+00
  chirality model="   1" pdb=" CB  ILE A  71 "
            model="   1" pdb=" CA  ILE A  71 "
            model="   1" pdb=" CG1 ILE A  71 "
            model="   1" pdb=" CG2 ILE A  71 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.64    2.30    0.35 2.00e-01 2.50e+01 2.99e+00
  chirality model="   1" pdb=" CB  ILE A  77 "
            model="   1" pdb=" CA  ILE A  77 "
            model="   1" pdb=" CG1 ILE A  77 "
            model="   1" pdb=" CG2 ILE A  77 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.64    2.32    0.32 2.00e-01 2.50e+01 2.64e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  12 "   -0.101 2.00e-02 2.50e+03   4.46e-02 5.97e+01
        model="   1" pdb=" CG  TYR A  12 "    0.009 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  12 "    0.030 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  12 "    0.013 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  12 "    0.003 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  12 "    0.022 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  12 "   -0.008 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  12 "   -0.077 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  12 "    0.061 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  12 "    0.010 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  12 "   -0.009 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  12 "    0.047 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  68 "   -0.071 2.00e-02 2.50e+03   3.62e-02 3.92e+01
        model="   1" pdb=" CG  TYR A  68 "   -0.023 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  68 "    0.022 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  68 "    0.006 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  68 "   -0.001 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  68 "    0.015 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  68 "   -0.008 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  68 "   -0.053 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  68 "    0.069 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  68 "    0.020 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  68 "   -0.012 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  68 "    0.036 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  PHE A  15 "   -0.057 2.00e-02 2.50e+03   2.50e-02 1.88e+01
        model="   1" pdb=" CG  PHE A  15 "   -0.002 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 PHE A  15 "    0.009 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 PHE A  15 "    0.018 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 PHE A  15 "    0.006 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 PHE A  15 "   -0.003 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  PHE A  15 "   -0.011 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 PHE A  15 "    0.018 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 PHE A  15 "    0.046 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 PHE A  15 "    0.016 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 PHE A  15 "   -0.012 2.00e-02 2.50e+03
        model="   1" pdb=" HZ  PHE A  15 "   -0.028 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.55 -     2.16: 95
        2.16 -     2.77: 4159
        2.77 -     3.38: 5776
        3.38 -     3.99: 6949
        3.99 -     4.60: 10249
  Nonbonded interactions: 27228
  Sorted by model distance:
  nonbonded model="   1" pdb=" HB  ILE A  71 "
            model="   1" pdb="HG21 ILE A  77 "
     model   vdw
     1.550 2.440
  nonbonded model="   1" pdb=" OD2 ASP A  36 "
            model="   1" pdb=" HZ2 LYS A  40 "
     model   vdw
     1.710 1.850
  nonbonded model="   1" pdb=" HZ2 LYS A  85 "
            model="   1" pdb=" OD2 ASP A  88 "
     model   vdw
     1.749 1.850
  nonbonded model="   1" pdb=" HZ3 LYS A  10 "
            model="   1" pdb=" OD1 ASP A  23 "
     model   vdw
     1.788 1.850
  nonbonded model="   1" pdb=" OE2 GLU A  32 "
            model="   1" pdb=" HZ1 LYS A  79 "
     model   vdw
     1.797 1.850
  ... (remaining 27223 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.
Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  

Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  


============================== Collecting inputs ==============================

Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  

Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  


  Symmetric amino acids flipped
    Residue "A GLU    8": "OE1" <-> "OE2"
    Residue "A TYR   12": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU   16": "OE1" <-> "OE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A PHE   67": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ASP   88": "OD1" <-> "OD2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ASP  118": "OD1" <-> "OD2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""

  Symmetric amino acids flipped
    Residue "A GLU    8": "OE1" <-> "OE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   24": "OE1" <-> "OE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A PHE   67": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR   81": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU   84": "OE1" <-> "OE2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU  120": "OE1" <-> "OE2"
    Residue "A GLU  123": "OE1" <-> "OE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU  133": "OE1" <-> "OE2"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""

  Symmetric amino acids flipped
    Residue "A TYR   12": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   24": "OE1" <-> "OE2"
    Residue "A GLU   49": "OE1" <-> "OE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   84": "OE1" <-> "OE2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU  133": "OE1" <-> "OE2"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'PTRANS': 7, 'TRANS': 131}

  Symmetric amino acids flipped
    Residue "A PHE   15": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A PHE   67": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR   68": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU   84": "OE1" <-> "OE2"
    Residue "A TYR   91": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""

  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 0.96
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 1.10 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  


  Symmetric amino acids flipped
    Residue "A GLU    8": "OE1" <-> "OE2"
    Residue "A TYR   12": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU   16": "OE1" <-> "OE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A PHE   67": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR   68": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR   81": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU   84": "OE1" <-> "OE2"
    Residue "A TYR   91": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU  133": "OE1" <-> "OE2"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""

  Symmetric amino acids flipped
    Residue "A GLU    8": "OE1" <-> "OE2"
    Residue "A TYR   12": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   24": "OE1" <-> "OE2"
    Residue "A ASP   44": "OD1" <-> "OD2"
    Residue "A GLU   55": "OE1" <-> "OE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A TYR   68": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU   84": "OE1" <-> "OE2"
    Residue "A TYR   91": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ASP   95": "OD1" <-> "OD2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ASP  116": "OD1" <-> "OD2"
    Residue "A ASP  118": "OD1" <-> "OD2"
    Residue "A GLU  123": "OE1" <-> "OE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""
  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 125
        1.23 -     1.43: 342
        1.43 -     1.62: 664
        1.62 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" CE1 HIS A 137 "
       model="   1" pdb=" NE2 HIS A 137 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.18e+01
  bond model="   1" pdb=" CE1 HIS A 134 "
       model="   1" pdb=" NE2 HIS A 134 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.16e+01
  bond model="   1" pdb=" CE1 HIS A 139 "
       model="   1" pdb=" NE2 HIS A 139 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.16e+01
  bond model="   1" pdb=" CE1 HIS A 138 "
       model="   1" pdb=" NE2 HIS A 138 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.16e+01
  bond model="   1" pdb=" CE1 HIS A 135 "
       model="   1" pdb=" NE2 HIS A 135 "
    ideal  model  delta    sigma   weight residual
    1.321  1.354 -0.033 1.00e-02 1.00e+04 1.12e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       96.83 -   103.75: 30
      103.75 -   110.67: 2252
      110.67 -   117.59: 800
      117.59 -   124.50: 934
      124.50 -   131.42: 61
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" CA  ASP A  74 "
        model="   1" pdb=" CB  ASP A  74 "
        model="   1" pdb=" CG  ASP A  74 "
      ideal   model   delta    sigma   weight residual
     112.60  118.81   -6.21 1.00e+00 1.00e+00 3.86e+01
  angle model="   1" pdb=" N   PRO A 117 "
        model="   1" pdb=" CA  PRO A 117 "
        model="   1" pdb=" C   PRO A 117 "
      ideal   model   delta    sigma   weight residual
     112.10  125.41  -13.31 2.50e+00 1.60e-01 2.83e+01
  angle model="   1" pdb=" C   ALA A 115 "
        model="   1" pdb=" N   ASP A 116 "
        model="   1" pdb=" CA  ASP A 116 "
      ideal   model   delta    sigma   weight residual
     121.70  130.89   -9.19 1.80e+00 3.09e-01 2.61e+01
  angle model="   1" pdb=" CA  LYS A 101 "
        model="   1" pdb=" C   LYS A 101 "
        model="   1" pdb=" N   PRO A 102 "
      ideal   model   delta    sigma   weight residual
     116.90  124.28   -7.38 1.50e+00 4.44e-01 2.42e+01
  angle model="   1" pdb=" CB  PRO A 117 "
        model="   1" pdb=" CA  PRO A 117 "
        model="   1" pdb=" HA  PRO A 117 "
      ideal   model   delta    sigma   weight residual
     109.00  123.34  -14.34 3.00e+00 1.11e-01 2.29e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    10.62: 925
       10.62 -    21.24: 68
       21.24 -    31.85: 24
       31.85 -    42.47: 8
       42.47 -    53.09: 7
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" CA  PRO A 114 "
           model="   1" pdb=" C   PRO A 114 "
           model="   1" pdb=" N   ALA A 115 "
           model="   1" pdb=" CA  ALA A 115 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  140.21   39.79     0      5.00e+00 4.00e-02 6.33e+01
  dihedral model="   1" pdb=" CA  PRO A 117 "
           model="   1" pdb=" C   PRO A 117 "
           model="   1" pdb=" N   ASP A 118 "
           model="   1" pdb=" CA  ASP A 118 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  142.91   37.09     0      5.00e+00 4.00e-02 5.50e+01
  dihedral model="   1" pdb=" CA  ASP A 116 "
           model="   1" pdb=" C   ASP A 116 "
           model="   1" pdb=" N   PRO A 117 "
           model="   1" pdb=" CA  PRO A 117 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00 -158.89  -21.11     0      5.00e+00 4.00e-02 1.78e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.000 -    0.082: 128
       0.082 -    0.163: 33
       0.163 -    0.245: 10
       0.245 -    0.327: 3
       0.327 -    0.408: 2
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  PRO A 117 "
            model="   1" pdb=" N   PRO A 117 "
            model="   1" pdb=" C   PRO A 117 "
            model="   1" pdb=" CB  PRO A 117 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.72    2.31    0.41 2.00e-01 2.50e+01 4.17e+00
  chirality model="   1" pdb=" CB  ILE A  71 "
            model="   1" pdb=" CA  ILE A  71 "
            model="   1" pdb=" CG1 ILE A  71 "
            model="   1" pdb=" CG2 ILE A  71 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.64    2.30    0.35 2.00e-01 2.50e+01 2.99e+00
  chirality model="   1" pdb=" CB  ILE A  77 "
            model="   1" pdb=" CA  ILE A  77 "
            model="   1" pdb=" CG1 ILE A  77 "
            model="   1" pdb=" CG2 ILE A  77 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.64    2.32    0.32 2.00e-01 2.50e+01 2.64e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  12 "   -0.101 2.00e-02 2.50e+03   4.46e-02 5.97e+01
        model="   1" pdb=" CG  TYR A  12 "    0.009 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  12 "    0.030 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  12 "    0.013 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  12 "    0.003 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  12 "    0.022 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  12 "   -0.008 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  12 "   -0.077 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  12 "    0.061 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  12 "    0.010 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  12 "   -0.009 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  12 "    0.047 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  68 "   -0.071 2.00e-02 2.50e+03   3.62e-02 3.92e+01
        model="   1" pdb=" CG  TYR A  68 "   -0.023 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  68 "    0.022 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  68 "    0.006 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  68 "   -0.001 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  68 "    0.015 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  68 "   -0.008 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  68 "   -0.053 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  68 "    0.069 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  68 "    0.020 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  68 "   -0.012 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  68 "    0.036 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  PHE A  15 "   -0.057 2.00e-02 2.50e+03   2.50e-02 1.88e+01
        model="   1" pdb=" CG  PHE A  15 "   -0.002 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 PHE A  15 "    0.009 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 PHE A  15 "    0.018 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 PHE A  15 "    0.006 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 PHE A  15 "   -0.003 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  PHE A  15 "   -0.011 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 PHE A  15 "    0.018 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 PHE A  15 "    0.046 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 PHE A  15 "    0.016 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 PHE A  15 "   -0.012 2.00e-02 2.50e+03
        model="   1" pdb=" HZ  PHE A  15 "   -0.028 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.55 -     2.16: 95
        2.16 -     2.77: 4159
        2.77 -     3.38: 5776
        3.38 -     3.99: 6949
        3.99 -     4.60: 10249
  Nonbonded interactions: 27228
  Sorted by model distance:
  nonbonded model="   1" pdb=" HB  ILE A  71 "
            model="   1" pdb="HG21 ILE A  77 "
     model   vdw
     1.550 2.440
  nonbonded model="   1" pdb=" OD2 ASP A  36 "
            model="   1" pdb=" HZ2 LYS A  40 "
     model   vdw
     1.710 1.850
  nonbonded model="   1" pdb=" HZ2 LYS A  85 "
            model="   1" pdb=" OD2 ASP A  88 "
     model   vdw
     1.749 1.850
  nonbonded model="   1" pdb=" HZ3 LYS A  10 "
            model="   1" pdb=" OD1 ASP A  23 "
     model   vdw
     1.788 1.850
  nonbonded model="   1" pdb=" OE2 GLU A  32 "
            model="   1" pdb=" HZ1 LYS A  79 "
     model   vdw
     1.797 1.850
  ... (remaining 27223 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.
Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  


  Symmetric amino acids flipped
    Residue "A GLU    8": "OE1" <-> "OE2"
    Residue "A GLU   16": "OE1" <-> "OE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ASP   36": "OD1" <-> "OD2"
    Residue "A ASP   47": "OD1" <-> "OD2"
    Residue "A TYR   50": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A PHE   67": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR   89": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR   91": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU  120": "OE1" <-> "OE2"
    Residue "A GLU  123": "OE1" <-> "OE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU  133": "OE1" <-> "OE2"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'PTRANS': 7, 'TRANS': 131}
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'PTRANS': 7, 'TRANS': 131}
Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  

  Time building chain proxies: 1.20, per 1000 atoms: 0.54
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (59.821, 43.216, 86.359, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'PTRANS': 7, 'TRANS': 131}
Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  

        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'PTRANS': 7, 'TRANS': 131}

  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 1.03
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 1.15 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.


  Symmetric amino acids flipped
    Residue "A GLU    8": "OE1" <-> "OE2"
    Residue "A TYR   12": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU   16": "OE1" <-> "OE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   24": "OE1" <-> "OE2"
    Residue "A PHE   45": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A TYR   68": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ASP   74": "OD1" <-> "OD2"
    Residue "A TYR   81": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU   84": "OE1" <-> "OE2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ASP  118": "OD1" <-> "OD2"
    Residue "A GLU  120": "OE1" <-> "OE2"
    Residue "A GLU  123": "OE1" <-> "OE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'PTRANS': 7, 'TRANS': 131}

  Symmetric amino acids flipped
    Residue "A GLU    8": "OE1" <-> "OE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   24": "OE1" <-> "OE2"
    Residue "A GLU   32": "OE1" <-> "OE2"
    Residue "A ASP   36": "OD1" <-> "OD2"
    Residue "A GLU   49": "OE1" <-> "OE2"
    Residue "A GLU   55": "OE1" <-> "OE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   84": "OE1" <-> "OE2"
    Residue "A ASP   88": "OD1" <-> "OD2"
    Residue "A GLU  120": "OE1" <-> "OE2"
    Residue "A GLU  123": "OE1" <-> "OE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""
  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 124
        1.23 -     1.43: 348
        1.43 -     1.63: 659
        1.63 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" CB  HIS A  43 "
       model="   1" pdb=" CG  HIS A  43 "
    ideal  model  delta    sigma   weight residual
    1.497  1.435  0.062 1.40e-02 5.10e+03 1.94e+01
  bond model="   1" pdb=" C   ILE A  71 "
       model="   1" pdb=" N   ASN A  72 "
    ideal  model  delta    sigma   weight residual
    1.329  1.389 -0.060 1.40e-02 5.10e+03 1.84e+01
  bond model="   1" pdb=" CE1 HIS A 138 "
       model="   1" pdb=" NE2 HIS A 138 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.16e+01
  bond model="   1" pdb=" CE1 HIS A 139 "
       model="   1" pdb=" NE2 HIS A 139 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.15e+01
  bond model="   1" pdb=" CE1 HIS A 135 "
       model="   1" pdb=" NE2 HIS A 135 "
    ideal  model  delta    sigma   weight residual
    1.321  1.354 -0.033 1.00e-02 1.00e+04 1.08e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       95.69 -   102.85: 24
      102.85 -   110.01: 2098
      110.01 -   117.18: 957
      117.18 -   124.34: 890
      124.34 -   131.50: 108
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" CA  ASN A  72 "
        model="   1" pdb=" CB  ASN A  72 "
        model="   1" pdb=" CG  ASN A  72 "
      ideal   model   delta    sigma   weight residual
     112.60  122.73  -10.13 1.00e+00 1.00e+00 1.03e+02
  angle model="   1" pdb=" CA  ASP A  74 "
        model="   1" pdb=" CB  ASP A  74 "
        model="   1" pdb=" CG  ASP A  74 "
      ideal   model   delta    sigma   weight residual
     112.60  121.46   -8.86 1.00e+00 1.00e+00 7.85e+01
  angle model="   1" pdb=" C   HIS A  43 "
        model="   1" pdb=" CA  HIS A  43 "
        model="   1" pdb=" CB  HIS A  43 "
      ideal   model   delta    sigma   weight residual
     110.10   97.58   12.52 1.90e+00 2.77e-01 4.34e+01
  angle model="   1" pdb=" OD1 ASN A  72 "
        model="   1" pdb=" CG  ASN A  72 "
        model="   1" pdb=" ND2 ASN A  72 "
      ideal   model   delta    sigma   weight residual
     122.60  116.52    6.08 1.00e+00 1.00e+00 3.70e+01
  angle model="   1" pdb=" CA  THR A   5 "
        model="   1" pdb=" C   THR A   5 "
        model="   1" pdb=" N   PRO A   6 "
      ideal   model   delta    sigma   weight residual
     116.90  125.80   -8.90 1.50e+00 4.44e-01 3.52e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    18.24: 983
       18.24 -    36.48: 40
       36.48 -    54.73: 5
       54.73 -    72.97: 1
       72.97 -    91.21: 3
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" C   ILE A  51 "
           model="   1" pdb=" N   ILE A  51 "
           model="   1" pdb=" CA  ILE A  51 "
           model="   1" pdb=" CB  ILE A  51 "
      ideal   model   delta  harmonic     sigma   weight residual
    -122.00 -140.41   18.41     0      2.50e+00 1.60e-01 5.43e+01
  dihedral model="   1" pdb=" N   ILE A  51 "
           model="   1" pdb=" C   ILE A  51 "
           model="   1" pdb=" CA  ILE A  51 "
           model="   1" pdb=" CB  ILE A  51 "
      ideal   model   delta  harmonic     sigma   weight residual
     123.40  139.99  -16.59     0      2.50e+00 1.60e-01 4.41e+01
  dihedral model="   1" pdb=" C   VAL A  14 "
           model="   1" pdb=" N   VAL A  14 "
           model="   1" pdb=" CA  VAL A  14 "
           model="   1" pdb=" CB  VAL A  14 "
      ideal   model   delta  harmonic     sigma   weight residual
    -122.00 -137.92   15.92     0      2.50e+00 1.60e-01 4.05e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.000 -    0.118: 146
       0.118 -    0.236: 24
       0.236 -    0.354: 4
       0.354 -    0.472: 0
       0.472 -    0.590: 2
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  VAL A  14 "
            model="   1" pdb=" N   VAL A  14 "
            model="   1" pdb=" C   VAL A  14 "
            model="   1" pdb=" CB  VAL A  14 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.44    1.85    0.59 2.00e-01 2.50e+01 8.70e+00
  chirality model="   1" pdb=" CA  ILE A  51 "
            model="   1" pdb=" N   ILE A  51 "
            model="   1" pdb=" C   ILE A  51 "
            model="   1" pdb=" CB  ILE A  51 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.43    1.86    0.58 2.00e-01 2.50e+01 8.35e+00
  chirality model="   1" pdb=" CB  VAL A  14 "
            model="   1" pdb=" CA  VAL A  14 "
            model="   1" pdb=" CG1 VAL A  14 "
            model="   1" pdb=" CG2 VAL A  14 "
    both_signs  ideal   model   delta    sigma   weight residual
      False     -2.63   -2.29   -0.34 2.00e-01 2.50e+01 2.88e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  68 "   -0.095 2.00e-02 2.50e+03   1.99e-01 1.18e+03
        model="   1" pdb=" CG  TYR A  68 "    0.034 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  68 "    0.129 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  68 "   -0.029 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  68 "   -0.148 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  68 "    0.014 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  68 "    0.010 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  68 "    0.233 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  68 "    0.375 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  68 "   -0.102 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  68 "   -0.465 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  68 "    0.044 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  50 "    0.113 2.00e-02 2.50e+03   8.82e-02 2.33e+02
        model="   1" pdb=" CG  TYR A  50 "    0.046 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  50 "    0.016 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  50 "   -0.060 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  50 "   -0.050 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  50 "    0.027 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  50 "    0.013 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  50 "    0.084 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  50 "    0.040 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  50 "   -0.188 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  50 "   -0.134 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  50 "    0.095 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  81 "    0.113 2.00e-02 2.50e+03   5.46e-02 8.96e+01
        model="   1" pdb=" CG  TYR A  81 "    0.015 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  81 "   -0.036 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  81 "   -0.019 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  81 "    0.020 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  81 "    0.001 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  81 "    0.067 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  81 "    0.009 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  81 "   -0.108 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  81 "   -0.057 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  81 "    0.025 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  81 "   -0.029 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.71 -     2.28: 322
        2.28 -     2.86: 5009
        2.86 -     3.44: 5284
        3.44 -     4.02: 6634
        4.02 -     4.60: 9936
  Nonbonded interactions: 27185
  Sorted by model distance:
  nonbonded model="   1" pdb=" OD2 ASP A  36 "
            model="   1" pdb=" HH  TYR A  68 "
     model   vdw
     1.706 1.850
  nonbonded model="   1" pdb=" HA  TYR A  68 "
            model="   1" pdb=" HD1 TYR A  68 "
     model   vdw
     1.729 2.270
  nonbonded model="   1" pdb="HG13 ILE A  71 "
            model="   1" pdb=" H   GLY A  73 "
     model   vdw
     1.747 2.270
  nonbonded model="   1" pdb=" O   LEU A  70 "
            model="   1" pdb=" HZ2 LYS A  79 "
     model   vdw
     1.846 1.850
  nonbonded model="   1" pdb=" H   LEU A   2 "
            model="   1" pdb=" HB2 TYR A  50 "
     model   vdw
     1.848 2.270
  ... (remaining 27180 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 0.52
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 0.59 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Time building chain proxies: 1.09, per 1000 atoms: 0.49
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (81.208, 44.652, 46.519, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.
  Time building chain proxies: 1.16, per 1000 atoms: 0.52
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (57.473, 37.547, 73.131, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.
  Time building chain proxies: 0.64, per 1000 atoms: 0.29
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (93.745, 38.68, 67.05, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.
  Time building chain proxies: 1.10, per 1000 atoms: 0.50
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (54.524, 37.039, 86.993, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'CIS': 2, 'PTRANS': 7, 'TRANS': 129}
  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 86
        1.23 -     1.43: 391
        1.43 -     1.63: 654
        1.63 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" C   PRO A 117 "
       model="   1" pdb=" N   ASP A 118 "
    ideal  model  delta    sigma   weight residual
    1.329  1.410 -0.081 1.40e-02 5.10e+03 3.38e+01
  bond model="   1" pdb=" C   ASP A 116 "
       model="   1" pdb=" O   ASP A 116 "
    ideal  model  delta    sigma   weight residual
    1.231  1.342 -0.111 2.00e-02 2.50e+03 3.09e+01
  bond model="   1" pdb=" N   PRO A 117 "
       model="   1" pdb=" CD  PRO A 117 "
    ideal  model  delta    sigma   weight residual
    1.473  1.528 -0.055 1.40e-02 5.10e+03 1.53e+01
  bond model="   1" pdb=" CD  ARG A 129 "
       model="   1" pdb=" NE  ARG A 129 "
    ideal  model  delta    sigma   weight residual
    1.458  1.508 -0.050 1.40e-02 5.10e+03 1.27e+01
  bond model="   1" pdb=" CA  PRO A 117 "
       model="   1" pdb=" C   PRO A 117 "
    ideal  model  delta    sigma   weight residual
    1.525  1.599 -0.074 2.10e-02 2.27e+03 1.25e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       96.58 -   104.07: 53
      104.07 -   111.57: 2420
      111.57 -   119.06: 733
      119.06 -   126.55: 838
      126.55 -   134.05: 33
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" CA  ASP A  74 "
        model="   1" pdb=" CB  ASP A  74 "
        model="   1" pdb=" CG  ASP A  74 "
      ideal   model   delta    sigma   weight residual
     112.60  104.62    7.98 1.00e+00 1.00e+00 6.37e+01
  angle model="   1" pdb=" N   PRO A 117 "
        model="   1" pdb=" CA  PRO A 117 "
        model="   1" pdb=" C   PRO A 117 "
      ideal   model   delta    sigma   weight residual
     112.10  130.13  -18.03 2.50e+00 1.60e-01 5.20e+01
  angle model="   1" pdb=" CA  ASP A  29 "
        model="   1" pdb=" CB  ASP A  29 "
        model="   1" pdb=" CG  ASP A  29 "
      ideal   model   delta    sigma   weight residual
     112.60  119.62   -7.02 1.00e+00 1.00e+00 4.93e+01
  angle model="   1" pdb=" C   SER A  98 "
        model="   1" pdb=" N   LEU A  99 "
        model="   1" pdb=" CA  LEU A  99 "
      ideal   model   delta    sigma   weight residual
     121.70  134.05  -12.35 1.80e+00 3.09e-01 4.71e+01
  angle model="   1" pdb=" CB  PRO A 117 "
        model="   1" pdb=" CA  PRO A 117 "
        model="   1" pdb=" HA  PRO A 117 "
      ideal   model   delta    sigma   weight residual
     109.00  129.54  -20.54 3.00e+00 1.11e-01 4.69e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    16.80: 985
       16.80 -    33.59: 33
       33.59 -    50.39: 9
       50.39 -    67.18: 2
       67.18 -    83.97: 3
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" N   TYR A  89 "
           model="   1" pdb=" C   TYR A  89 "
           model="   1" pdb=" CA  TYR A  89 "
           model="   1" pdb=" CB  TYR A  89 "
      ideal   model   delta  harmonic     sigma   weight residual
     122.80  140.95  -18.15     0      2.50e+00 1.60e-01 5.27e+01
  dihedral model="   1" pdb=" CA  ASP A 116 "
           model="   1" pdb=" C   ASP A 116 "
           model="   1" pdb=" N   PRO A 117 "
           model="   1" pdb=" CA  PRO A 117 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00 -144.47  -35.53     0      5.00e+00 4.00e-02 5.05e+01
  dihedral model="   1" pdb=" C   TYR A  89 "
           model="   1" pdb=" N   TYR A  89 "
           model="   1" pdb=" CA  TYR A  89 "
           model="   1" pdb=" CB  TYR A  89 "
      ideal   model   delta  harmonic     sigma   weight residual
    -122.60 -139.37   16.77     0      2.50e+00 1.60e-01 4.50e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.002 -    0.138: 141
       0.138 -    0.273: 29
       0.273 -    0.409: 2
       0.409 -    0.545: 3
       0.545 -    0.680: 1
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  TYR A  89 "
            model="   1" pdb=" N   TYR A  89 "
            model="   1" pdb=" C   TYR A  89 "
            model="   1" pdb=" CB  TYR A  89 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    1.83    0.68 2.00e-01 2.50e+01 1.16e+01
  chirality model="   1" pdb=" CA  ASP A 116 "
            model="   1" pdb=" N   ASP A 116 "
            model="   1" pdb=" C   ASP A 116 "
            model="   1" pdb=" CB  ASP A 116 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.03    0.48 2.00e-01 2.50e+01 5.80e+00
  chirality model="   1" pdb=" CA  ASP A  74 "
            model="   1" pdb=" N   ASP A  74 "
            model="   1" pdb=" C   ASP A  74 "
            model="   1" pdb=" CB  ASP A  74 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.04    0.47 2.00e-01 2.50e+01 5.60e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  PHE A  45 "    0.006 2.00e-02 2.50e+03   4.14e-02 5.15e+01
        model="   1" pdb=" CG  PHE A  45 "    0.012 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 PHE A  45 "   -0.014 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 PHE A  45 "    0.018 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 PHE A  45 "    0.002 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 PHE A  45 "   -0.030 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  PHE A  45 "    0.021 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 PHE A  45 "   -0.040 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 PHE A  45 "    0.055 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 PHE A  45 "   -0.001 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 PHE A  45 "   -0.096 2.00e-02 2.50e+03
        model="   1" pdb=" HZ  PHE A  45 "    0.068 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A 105 "   -0.009 2.00e-02 2.50e+03   3.58e-02 3.84e+01
        model="   1" pdb=" CG  TYR A 105 "   -0.011 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A 105 "   -0.012 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A 105 "    0.004 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A 105 "    0.029 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A 105 "    0.013 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A 105 "    0.008 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A 105 "   -0.083 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A 105 "   -0.040 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A 105 "    0.009 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A 105 "    0.070 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A 105 "    0.022 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  PHE A  15 "    0.047 2.00e-02 2.50e+03   2.72e-02 2.22e+01
        model="   1" pdb=" CG  PHE A  15 "    0.030 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 PHE A  15 "   -0.005 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 PHE A  15 "   -0.015 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 PHE A  15 "   -0.006 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 PHE A  15 "    0.003 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  PHE A  15 "    0.012 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 PHE A  15 "   -0.028 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 PHE A  15 "   -0.056 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 PHE A  15 "   -0.020 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 PHE A  15 "    0.008 2.00e-02 2.50e+03
        model="   1" pdb=" HZ  PHE A  15 "    0.030 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.72 -     2.29: 335
        2.29 -     2.87: 5039
        2.87 -     3.45: 5221
        3.45 -     4.02: 6558
        4.02 -     4.60: 10047
  Nonbonded interactions: 27200
  Sorted by model distance:
  nonbonded model="   1" pdb="HG23 VAL A  41 "
            model="   1" pdb=" H   HIS A  43 "
     model   vdw
     1.718 2.270
  nonbonded model="   1" pdb=" HZ2 LYS A  40 "
            model="   1" pdb=" OE1 GLN A 100 "
     model   vdw
     1.799 1.850
  nonbonded model="   1" pdb=" OD1 ASP A  74 "
            model="   1" pdb=" HZ1 LYS A  79 "
     model   vdw
     1.822 1.850
  nonbonded model="   1" pdb=" O   ASP A  23 "
            model="   1" pdb=" H   LYS A  27 "
     model   vdw
     1.918 1.850
  nonbonded model="   1" pdb=" H   LEU A   2 "
            model="   1" pdb="HD12 LEU A   2 "
     model   vdw
     1.924 2.270
  ... (remaining 27195 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.
  Time building chain proxies: 1.10, per 1000 atoms: 0.50
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (70.684, 47.689, 50.352, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'CIS': 1, 'PTRANS': 7, 'TRANS': 130}
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'PTRANS': 7, 'TRANS': 131}

  Symmetric amino acids flipped
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   24": "OE1" <-> "OE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A PHE   67": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ASP   74": "OD1" <-> "OD2"
    Residue "A GLU   75": "OE1" <-> "OE2"
    Residue "A GLU   84": "OE1" <-> "OE2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU  123": "OE1" <-> "OE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'CIS': 3, 'PTRANS': 7, 'TRANS': 128}

  Symmetric amino acids flipped
    Residue "A GLU    8": "OE1" <-> "OE2"
    Residue "A TYR   12": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU   16": "OE1" <-> "OE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   24": "OE1" <-> "OE2"
    Residue "A GLU   32": "OE1" <-> "OE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A TYR   68": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU   75": "OE1" <-> "OE2"
    Residue "A TYR   91": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU  133": "OE1" <-> "OE2"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""

  Symmetric amino acids flipped
    Residue "A GLU    8": "OE1" <-> "OE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   24": "OE1" <-> "OE2"
    Residue "A ASP   36": "OD1" <-> "OD2"
    Residue "A ASP   47": "OD1" <-> "OD2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   84": "OE1" <-> "OE2"
    Residue "A TYR   89": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ASP   95": "OD1" <-> "OD2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU  123": "OE1" <-> "OE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""
  Time building chain proxies: 0.60, per 1000 atoms: 0.27
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (68.218, 64.609, 64.299, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.

  Symmetric amino acids flipped
    Residue "A GLU    8": "OE1" <-> "OE2"
    Residue "A TYR   12": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A PHE   15": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU   16": "OE1" <-> "OE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ASP   47": "OD1" <-> "OD2"
    Residue "A GLU   55": "OE1" <-> "OE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A PHE   67": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU   84": "OE1" <-> "OE2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU  120": "OE1" <-> "OE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""

  Symmetric amino acids flipped
    Residue "A TYR   12": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   24": "OE1" <-> "OE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A TYR   81": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU   84": "OE1" <-> "OE2"
    Residue "A ASP   88": "OD1" <-> "OD2"
    Residue "A TYR   89": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR   91": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ASP  116": "OD1" <-> "OD2"
    Residue "A GLU  120": "OE1" <-> "OE2"
    Residue "A GLU  123": "OE1" <-> "OE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""

  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 0.76
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 0.89 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'PTRANS': 7, 'TRANS': 131}

  Symmetric amino acids flipped
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   24": "OE1" <-> "OE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A PHE   67": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ASP   74": "OD1" <-> "OD2"
    Residue "A GLU   75": "OE1" <-> "OE2"
    Residue "A GLU   84": "OE1" <-> "OE2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU  123": "OE1" <-> "OE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'PTRANS': 7, 'TRANS': 131}
  Time building chain proxies: 1.11, per 1000 atoms: 0.50
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (88.974, 57.862, 66.28, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.

  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 0.70
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 0.81 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Time building chain proxies: 1.09, per 1000 atoms: 0.49
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (59.704, 50.95, 94.681, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.
  Time building chain proxies: 1.10, per 1000 atoms: 0.50
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (82.952, 43.931, 73.181, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.

  Symmetric amino acids flipped
    Residue "A GLU    8": "OE1" <-> "OE2"
    Residue "A TYR   12": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A PHE   15": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A PHE   67": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR   68": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR   91": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ASP  116": "OD1" <-> "OD2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""
  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 135
        1.23 -     1.43: 340
        1.43 -     1.63: 656
        1.63 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" CE1 HIS A 137 "
       model="   1" pdb=" NE2 HIS A 137 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.16e+01
  bond model="   1" pdb=" CE1 HIS A 138 "
       model="   1" pdb=" NE2 HIS A 138 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.16e+01
  bond model="   1" pdb=" C   GLY A  80 "
       model="   1" pdb=" O   GLY A  80 "
    ideal  model  delta    sigma   weight residual
    1.231  1.164  0.067 2.00e-02 2.50e+03 1.12e+01
  bond model="   1" pdb=" CE1 HIS A 139 "
       model="   1" pdb=" NE2 HIS A 139 "
    ideal  model  delta    sigma   weight residual
    1.321  1.354 -0.033 1.00e-02 1.00e+04 1.06e+01
  bond model="   1" pdb=" CE1 HIS A 134 "
       model="   1" pdb=" NE2 HIS A 134 "
    ideal  model  delta    sigma   weight residual
    1.321  1.353 -0.032 1.00e-02 1.00e+04 1.05e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       96.92 -   104.06: 48
      104.06 -   111.20: 2346
      111.20 -   118.34: 765
      118.34 -   125.48: 870
      125.48 -   132.62: 48
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" CA  ILE A  78 "
        model="   1" pdb=" CB  ILE A  78 "
        model="   1" pdb=" CG1 ILE A  78 "
      ideal   model   delta    sigma   weight residual
     110.40  123.12  -12.72 1.70e+00 3.46e-01 5.60e+01
  angle model="   1" pdb=" C   SER A  97 "
        model="   1" pdb=" CA  SER A  97 "
        model="   1" pdb=" CB  SER A  97 "
      ideal   model   delta    sigma   weight residual
     110.10   99.02   11.08 1.90e+00 2.77e-01 3.40e+01
  angle model="   1" pdb=" C   HIS A  43 "
        model="   1" pdb=" CA  HIS A  43 "
        model="   1" pdb=" CB  HIS A  43 "
      ideal   model   delta    sigma   weight residual
     110.10   99.33   10.77 1.90e+00 2.77e-01 3.22e+01
  angle model="   1" pdb=" CA  LYS A 113 "
        model="   1" pdb=" C   LYS A 113 "
        model="   1" pdb=" N   PRO A 114 "
      ideal   model   delta    sigma   weight residual
     116.90  125.31   -8.41 1.50e+00 4.44e-01 3.14e+01
  angle model="   1" pdb=" CA  LYS A 101 "
        model="   1" pdb=" C   LYS A 101 "
        model="   1" pdb=" N   PRO A 102 "
      ideal   model   delta    sigma   weight residual
     116.90  124.97   -8.07 1.50e+00 4.44e-01 2.90e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    14.75: 969
       14.75 -    29.50: 42
       29.50 -    44.26: 13
       44.26 -    59.01: 4
       59.01 -    73.76: 4
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" CA  ARG A 127 "
           model="   1" pdb=" C   ARG A 127 "
           model="   1" pdb=" N   MET A 128 "
           model="   1" pdb=" CA  MET A 128 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  147.74   32.26     0      5.00e+00 4.00e-02 4.16e+01
  dihedral model="   1" pdb=" CA  ASP A 118 "
           model="   1" pdb=" C   ASP A 118 "
           model="   1" pdb=" N   LEU A 119 "
           model="   1" pdb=" CA  LEU A 119 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  155.06   24.94     0      5.00e+00 4.00e-02 2.49e+01
  dihedral model="   1" pdb=" C   SER A  97 "
           model="   1" pdb=" N   SER A  97 "
           model="   1" pdb=" CA  SER A  97 "
           model="   1" pdb=" CB  SER A  97 "
      ideal   model   delta  harmonic     sigma   weight residual
    -122.60 -110.24  -12.36     0      2.50e+00 1.60e-01 2.45e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.001 -    0.068: 101
       0.068 -    0.136: 45
       0.136 -    0.204: 17
       0.204 -    0.272: 6
       0.272 -    0.339: 7
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  ILE A  78 "
            model="   1" pdb=" N   ILE A  78 "
            model="   1" pdb=" C   ILE A  78 "
            model="   1" pdb=" CB  ILE A  78 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.43    2.09    0.34 2.00e-01 2.50e+01 2.88e+00
  chirality model="   1" pdb=" CA  LEU A   9 "
            model="   1" pdb=" N   LEU A   9 "
            model="   1" pdb=" C   LEU A   9 "
            model="   1" pdb=" CB  LEU A   9 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.18    0.33 2.00e-01 2.50e+01 2.77e+00
  chirality model="   1" pdb=" CA  MET A 128 "
            model="   1" pdb=" N   MET A 128 "
            model="   1" pdb=" C   MET A 128 "
            model="   1" pdb=" CB  MET A 128 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.19    0.32 2.00e-01 2.50e+01 2.63e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  68 "   -0.049 2.00e-02 2.50e+03   7.86e-02 1.85e+02
        model="   1" pdb=" CG  TYR A  68 "   -0.014 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  68 "    0.053 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  68 "   -0.025 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  68 "   -0.053 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  68 "    0.025 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  68 "   -0.028 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  68 "    0.032 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  68 "    0.171 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  68 "   -0.066 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  68 "   -0.142 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  68 "    0.095 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  81 "   -0.113 2.00e-02 2.50e+03   4.97e-02 7.40e+01
        model="   1" pdb=" CG  TYR A  81 "    0.038 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  81 "    0.016 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  81 "    0.035 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  81 "    0.026 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  81 "    0.008 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  81 "    0.019 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  81 "   -0.092 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  81 "   -0.004 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  81 "    0.051 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  81 "    0.036 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  81 "   -0.018 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  PHE A  45 "   -0.042 2.00e-02 2.50e+03   3.11e-02 2.91e+01
        model="   1" pdb=" CG  PHE A  45 "   -0.022 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 PHE A  45 "    0.011 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 PHE A  45 "    0.003 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 PHE A  45 "    0.006 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 PHE A  45 "    0.015 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  PHE A  45 "   -0.022 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 PHE A  45 "    0.035 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 PHE A  45 "    0.010 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 PHE A  45 "    0.022 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 PHE A  45 "    0.049 2.00e-02 2.50e+03
        model="   1" pdb=" HZ  PHE A  45 "   -0.066 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.68 -     2.27: 244
        2.27 -     2.85: 4930
        2.85 -     3.43: 5313
        3.43 -     4.02: 6766
        4.02 -     4.60: 10100
  Nonbonded interactions: 27353
  Sorted by model distance:
  nonbonded model="   1" pdb=" OE1 GLU A  32 "
            model="   1" pdb=" HZ1 LYS A  79 "
     model   vdw
     1.682 1.850
  nonbonded model="   1" pdb=" H   GLN A 100 "
            model="   1" pdb=" HG2 GLN A 100 "
     model   vdw
     1.690 2.270
  nonbonded model="   1" pdb=" H   ILE A  71 "
            model="   1" pdb="HG22 ILE A  71 "
     model   vdw
     1.787 2.270
  nonbonded model="   1" pdb=" HB2 SER A  13 "
            model="   1" pdb="HE22 GLN A  66 "
     model   vdw
     1.795 2.270
  nonbonded model="   1" pdb=" HZ3 LYS A  10 "
            model="   1" pdb=" OD1 ASP A  23 "
     model   vdw
     1.795 1.850
  ... (remaining 27348 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'CIS': 1, 'PTRANS': 7, 'TRANS': 130}
  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 108
        1.23 -     1.43: 357
        1.43 -     1.63: 666
        1.63 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" CE1 HIS A 138 "
       model="   1" pdb=" NE2 HIS A 138 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.13e+01
  bond model="   1" pdb=" CE1 HIS A 134 "
       model="   1" pdb=" NE2 HIS A 134 "
    ideal  model  delta    sigma   weight residual
    1.321  1.354 -0.033 1.00e-02 1.00e+04 1.08e+01
  bond model="   1" pdb=" CE1 HIS A 136 "
       model="   1" pdb=" NE2 HIS A 136 "
    ideal  model  delta    sigma   weight residual
    1.321  1.354 -0.033 1.00e-02 1.00e+04 1.06e+01
  bond model="   1" pdb=" CE1 HIS A 135 "
       model="   1" pdb=" NE2 HIS A 135 "
    ideal  model  delta    sigma   weight residual
    1.321  1.353 -0.032 1.00e-02 1.00e+04 1.05e+01
  bond model="   1" pdb=" CE1 HIS A 137 "
       model="   1" pdb=" NE2 HIS A 137 "
    ideal  model  delta    sigma   weight residual
    1.321  1.353 -0.032 1.00e-02 1.00e+04 1.05e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       95.53 -   102.69: 25
      102.69 -   109.85: 2029
      109.85 -   117.01: 991
      117.01 -   124.17: 931
      124.17 -   131.33: 101
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" CA  LYS A 113 "
        model="   1" pdb=" C   LYS A 113 "
        model="   1" pdb=" N   PRO A 114 "
      ideal   model   delta    sigma   weight residual
     116.90  124.84   -7.94 1.50e+00 4.44e-01 2.80e+01
  angle model="   1" pdb=" CA  VAL A  14 "
        model="   1" pdb=" CB  VAL A  14 "
        model="   1" pdb=" CG1 VAL A  14 "
      ideal   model   delta    sigma   weight residual
     110.40  119.25   -8.85 1.70e+00 3.46e-01 2.71e+01
  angle model="   1" pdb=" C   TYR A  50 "
        model="   1" pdb=" N   ILE A  51 "
        model="   1" pdb=" CA  ILE A  51 "
      ideal   model   delta    sigma   weight residual
     121.70  130.78   -9.08 1.80e+00 3.09e-01 2.55e+01
  angle model="   1" pdb=" CA  ASP A  88 "
        model="   1" pdb=" CB  ASP A  88 "
        model="   1" pdb=" CG  ASP A  88 "
      ideal   model   delta    sigma   weight residual
     112.60  117.49   -4.89 1.00e+00 1.00e+00 2.39e+01
  angle model="   1" pdb=" C   GLY A  42 "
        model="   1" pdb=" N   HIS A  43 "
        model="   1" pdb=" CA  HIS A  43 "
      ideal   model   delta    sigma   weight residual
     121.70  130.24   -8.54 1.80e+00 3.09e-01 2.25e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    10.64: 922
       10.64 -    21.28: 80
       21.28 -    31.92: 17
       31.92 -    42.55: 8
       42.55 -    53.19: 5
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" N   VAL A  14 "
           model="   1" pdb=" C   VAL A  14 "
           model="   1" pdb=" CA  VAL A  14 "
           model="   1" pdb=" CB  VAL A  14 "
      ideal   model   delta  harmonic     sigma   weight residual
     123.40  135.86  -12.46     0      2.50e+00 1.60e-01 2.48e+01
  dihedral model="   1" pdb=" CA  ILE A  77 "
           model="   1" pdb=" C   ILE A  77 "
           model="   1" pdb=" N   ILE A  78 "
           model="   1" pdb=" CA  ILE A  78 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  155.45   24.55     0      5.00e+00 4.00e-02 2.41e+01
  dihedral model="   1" pdb=" C   ILE A  86 "
           model="   1" pdb=" N   ILE A  86 "
           model="   1" pdb=" CA  ILE A  86 "
           model="   1" pdb=" CB  ILE A  86 "
      ideal   model   delta  harmonic     sigma   weight residual
    -122.00 -132.60   10.60     0      2.50e+00 1.60e-01 1.80e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.000 -    0.092: 119
       0.092 -    0.184: 41
       0.184 -    0.276: 12
       0.276 -    0.368: 3
       0.368 -    0.460: 1
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  LYS A  79 "
            model="   1" pdb=" N   LYS A  79 "
            model="   1" pdb=" C   LYS A  79 "
            model="   1" pdb=" CB  LYS A  79 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.05    0.46 2.00e-01 2.50e+01 5.28e+00
  chirality model="   1" pdb=" CA  GLU A  75 "
            model="   1" pdb=" N   GLU A  75 "
            model="   1" pdb=" C   GLU A  75 "
            model="   1" pdb=" CB  GLU A  75 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.16    0.35 2.00e-01 2.50e+01 3.00e+00
  chirality model="   1" pdb=" CA  VAL A  14 "
            model="   1" pdb=" N   VAL A  14 "
            model="   1" pdb=" C   VAL A  14 "
            model="   1" pdb=" CB  VAL A  14 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.44    2.12    0.32 2.00e-01 2.50e+01 2.60e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  89 "   -0.173 2.00e-02 2.50e+03   9.26e-02 2.57e+02
        model="   1" pdb=" CG  TYR A  89 "   -0.046 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  89 "    0.053 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  89 "    0.012 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  89 "   -0.004 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  89 "    0.041 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  89 "   -0.058 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  89 "   -0.140 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  89 "    0.162 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  89 "    0.030 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  89 "   -0.005 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  89 "    0.127 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  12 "    0.136 2.00e-02 2.50e+03   6.75e-02 1.37e+02
        model="   1" pdb=" CG  TYR A  12 "    0.023 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  12 "   -0.010 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  12 "   -0.047 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  12 "   -0.027 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  12 "    0.007 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  12 "    0.024 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  12 "    0.087 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  12 "   -0.020 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  12 "   -0.132 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  12 "   -0.074 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  12 "    0.033 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A 105 "   -0.058 2.00e-02 2.50e+03   5.21e-02 8.14e+01
        model="   1" pdb=" CG  TYR A 105 "   -0.052 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A 105 "    0.030 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A 105 "   -0.011 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A 105 "   -0.017 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A 105 "    0.023 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A 105 "   -0.031 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A 105 "   -0.039 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A 105 "    0.118 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A 105 "   -0.006 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A 105 "   -0.040 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A 105 "    0.082 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.68 -     2.26: 197
        2.26 -     2.85: 4837
        2.85 -     3.43: 5131
        3.43 -     4.02: 6463
        4.02 -     4.60: 9637
  Nonbonded interactions: 26265
  Sorted by model distance:
  nonbonded model="   1" pdb=" HZ1 LYS A  10 "
            model="   1" pdb=" OD1 ASP A  23 "
     model   vdw
     1.678 1.850
  nonbonded model="   1" pdb=" HZ1 LYS A  63 "
            model="   1" pdb=" OD2 ASP A 103 "
     model   vdw
     1.713 1.850
  nonbonded model="   1" pdb=" OE1 GLU A  16 "
            model="   1" pdb=" HZ2 LYS A  19 "
     model   vdw
     1.806 1.850
  nonbonded model="   1" pdb="HG23 VAL A  41 "
            model="   1" pdb=" H   HIS A  43 "
     model   vdw
     1.826 2.270
  nonbonded model="   1" pdb="HG23 ILE A  30 "
            model="   1" pdb="HD11 LEU A  61 "
     model   vdw
     1.881 2.440
  ... (remaining 26260 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Symmetric amino acids flipped
    Residue "A GLU    8": "OE1" <-> "OE2"
    Residue "A PHE   15": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   24": "OE1" <-> "OE2"
    Residue "A TYR   50": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A TYR   68": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU   75": "OE1" <-> "OE2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU  120": "OE1" <-> "OE2"
    Residue "A GLU  123": "OE1" <-> "OE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""
  Time building chain proxies: 1.07, per 1000 atoms: 0.48
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (88.103, 73.099, 68.3, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'PTRANS': 7, 'TRANS': 131}

  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 1.00
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 1.13 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Time building chain proxies: 1.11, per 1000 atoms: 0.50
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (66.921, 45.03, 50.164, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.
  Time building chain proxies: 0.84, per 1000 atoms: 0.38
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (94.373, 54.743, 67.983, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.
  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 88
        1.23 -     1.43: 382
        1.43 -     1.62: 661
        1.62 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" CA  VAL A  14 "
       model="   1" pdb=" CB  VAL A  14 "
    ideal  model  delta    sigma   weight residual
    1.540  1.442  0.098 2.70e-02 1.37e+03 1.31e+01
  bond model="   1" pdb=" CD  ARG A  21 "
       model="   1" pdb=" NE  ARG A  21 "
    ideal  model  delta    sigma   weight residual
    1.458  1.506 -0.048 1.40e-02 5.10e+03 1.15e+01
  bond model="   1" pdb=" CE1 HIS A 137 "
       model="   1" pdb=" NE2 HIS A 137 "
    ideal  model  delta    sigma   weight residual
    1.321  1.353 -0.032 1.00e-02 1.00e+04 1.01e+01
  bond model="   1" pdb=" CD  ARG A 127 "
       model="   1" pdb=" NE  ARG A 127 "
    ideal  model  delta    sigma   weight residual
    1.458  1.502 -0.044 1.40e-02 5.10e+03 9.75e+00
  bond model="   1" pdb=" CD  ARG A 129 "
       model="   1" pdb=" NE  ARG A 129 "
    ideal  model  delta    sigma   weight residual
    1.458  1.501 -0.043 1.40e-02 5.10e+03 9.61e+00
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       96.85 -   103.64: 48
      103.64 -   110.43: 2144
      110.43 -   117.21: 877
      117.21 -   124.00: 862
      124.00 -   130.79: 146
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" CA  LYS A 113 "
        model="   1" pdb=" C   LYS A 113 "
        model="   1" pdb=" N   PRO A 114 "
      ideal   model   delta    sigma   weight residual
     116.90  128.40  -11.50 1.50e+00 4.44e-01 5.88e+01
  angle model="   1" pdb=" CA  HIS A 138 "
        model="   1" pdb=" CB  HIS A 138 "
        model="   1" pdb=" CG  HIS A 138 "
      ideal   model   delta    sigma   weight residual
     113.80  120.65   -6.85 1.00e+00 1.00e+00 4.69e+01
  angle model="   1" pdb=" C   VAL A  14 "
        model="   1" pdb=" CA  VAL A  14 "
        model="   1" pdb=" CB  VAL A  14 "
      ideal   model   delta    sigma   weight residual
     111.40  100.19   11.21 1.90e+00 2.77e-01 3.48e+01
  angle model="   1" pdb=" CG1 VAL A  14 "
        model="   1" pdb=" CB  VAL A  14 "
        model="   1" pdb=" CG2 VAL A  14 "
      ideal   model   delta    sigma   weight residual
     110.80   98.38   12.42 2.20e+00 2.07e-01 3.19e+01
  angle model="   1" pdb=" N   VAL A  14 "
        model="   1" pdb=" CA  VAL A  14 "
        model="   1" pdb=" CB  VAL A  14 "
      ideal   model   delta    sigma   weight residual
     111.50  102.37    9.13 1.70e+00 3.46e-01 2.89e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    16.11: 978
       16.11 -    32.22: 43
       32.22 -    48.33: 6
       48.33 -    64.44: 4
       64.44 -    80.55: 1
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" CA  SER A  76 "
           model="   1" pdb=" C   SER A  76 "
           model="   1" pdb=" N   ILE A  77 "
           model="   1" pdb=" CA  ILE A  77 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  143.45   36.55     0      5.00e+00 4.00e-02 5.34e+01
  dihedral model="   1" pdb=" CA  HIS A 138 "
           model="   1" pdb=" C   HIS A 138 "
           model="   1" pdb=" N   HIS A 139 "
           model="   1" pdb=" CA  HIS A 139 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  144.62   35.38     0      5.00e+00 4.00e-02 5.01e+01
  dihedral model="   1" pdb=" C   ILE A  78 "
           model="   1" pdb=" N   ILE A  78 "
           model="   1" pdb=" CA  ILE A  78 "
           model="   1" pdb=" CB  ILE A  78 "
      ideal   model   delta  harmonic     sigma   weight residual
    -122.00 -136.13   14.13     0      2.50e+00 1.60e-01 3.20e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.001 -    0.131: 142
       0.131 -    0.261: 27
       0.261 -    0.391: 1
       0.391 -    0.522: 5
       0.522 -    0.652: 1
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CB  VAL A  18 "
            model="   1" pdb=" CA  VAL A  18 "
            model="   1" pdb=" CG1 VAL A  18 "
            model="   1" pdb=" CG2 VAL A  18 "
    both_signs  ideal   model   delta    sigma   weight residual
      False     -2.63   -1.98   -0.65 2.00e-01 2.50e+01 1.06e+01
  chirality model="   1" pdb=" CA  TYR A  81 "
            model="   1" pdb=" N   TYR A  81 "
            model="   1" pdb=" C   TYR A  81 "
            model="   1" pdb=" CB  TYR A  81 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.01    0.51 2.00e-01 2.50e+01 6.38e+00
  chirality model="   1" pdb=" CA  LYS A 113 "
            model="   1" pdb=" N   LYS A 113 "
            model="   1" pdb=" C   LYS A 113 "
            model="   1" pdb=" CB  LYS A 113 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.01    0.50 2.00e-01 2.50e+01 6.28e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  12 "    0.282 2.00e-02 2.50e+03   2.05e-01 1.27e+03
        model="   1" pdb=" CG  TYR A  12 "    0.069 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  12 "   -0.063 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  12 "   -0.013 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  12 "   -0.071 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  12 "   -0.141 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  12 "   -0.003 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  12 "    0.507 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  12 "   -0.144 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  12 "    0.017 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  12 "   -0.121 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  12 "   -0.317 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  89 "   -0.020 2.00e-02 2.50e+03   3.31e-02 3.29e+01
        model="   1" pdb=" CG  TYR A  89 "    0.007 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  89 "   -0.009 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  89 "    0.023 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  89 "    0.012 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  89 "   -0.022 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  89 "    0.008 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  89 "    0.014 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  89 "   -0.035 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  89 "    0.064 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  89 "    0.028 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  89 "   -0.071 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  81 "    0.079 2.00e-02 2.50e+03   3.18e-02 3.03e+01
        model="   1" pdb=" CG  TYR A  81 "   -0.008 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  81 "   -0.018 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  81 "   -0.016 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  81 "   -0.008 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  81 "   -0.009 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  81 "    0.006 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  81 "    0.056 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  81 "   -0.032 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  81 "   -0.026 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  81 "   -0.009 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  81 "   -0.015 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.74 -     2.31: 394
        2.31 -     2.88: 5091
        2.88 -     3.46: 5058
        3.46 -     4.03: 6297
        4.03 -     4.60: 9409
  Nonbonded interactions: 26249
  Sorted by model distance:
  nonbonded model="   1" pdb=" H   VAL A  14 "
            model="   1" pdb="HG22 VAL A  14 "
     model   vdw
     1.740 2.270
  nonbonded model="   1" pdb=" HZ3 LYS A  63 "
            model="   1" pdb=" OD2 ASP A 103 "
     model   vdw
     1.804 1.850
  nonbonded model="   1" pdb=" O   VAL A  18 "
            model="   1" pdb=" H   ARG A  21 "
     model   vdw
     1.870 1.850
  nonbonded model="   1" pdb="HG23 VAL A  41 "
            model="   1" pdb=" H   HIS A  43 "
     model   vdw
     1.875 2.270
  nonbonded model="   1" pdb="HG21 VAL A  14 "
            model="   1" pdb="HG11 VAL A  18 "
     model   vdw
     1.879 2.440
  ... (remaining 26244 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Symmetric amino acids flipped
    Residue "A GLU    8": "OE1" <-> "OE2"
    Residue "A TYR   12": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU   16": "OE1" <-> "OE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   24": "OE1" <-> "OE2"
    Residue "A GLU   49": "OE1" <-> "OE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A TYR   81": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU   84": "OE1" <-> "OE2"
    Residue "A ASP   88": "OD1" <-> "OD2"
    Residue "A TYR   91": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ASP  116": "OD1" <-> "OD2"
    Residue "A GLU  120": "OE1" <-> "OE2"
    Residue "A GLU  123": "OE1" <-> "OE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU  133": "OE1" <-> "OE2"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""

  Symmetric amino acids flipped
    Residue "A GLU    8": "OE1" <-> "OE2"
    Residue "A TYR   12": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A PHE   15": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ASP   36": "OD1" <-> "OD2"
    Residue "A PHE   45": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   84": "OE1" <-> "OE2"
    Residue "A TYR   89": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR   91": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ASP  103": "OD1" <-> "OD2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU  120": "OE1" <-> "OE2"
    Residue "A GLU  123": "OE1" <-> "OE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""

  Symmetric amino acids flipped
    Residue "A GLU    8": "OE1" <-> "OE2"
    Residue "A TYR   12": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU   16": "OE1" <-> "OE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   24": "OE1" <-> "OE2"
    Residue "A GLU   49": "OE1" <-> "OE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A TYR   81": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU   84": "OE1" <-> "OE2"
    Residue "A ASP   88": "OD1" <-> "OD2"
    Residue "A TYR   91": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ASP  116": "OD1" <-> "OD2"
    Residue "A GLU  120": "OE1" <-> "OE2"
    Residue "A GLU  123": "OE1" <-> "OE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU  133": "OE1" <-> "OE2"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'PTRANS': 7, 'TRANS': 131}
  Time building chain proxies: 1.13, per 1000 atoms: 0.51
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (81.208, 44.652, 46.519, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'CIS': 1, 'PTRANS': 7, 'TRANS': 130}
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'PTRANS': 7, 'TRANS': 131}
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'CIS': 2, 'PTRANS': 7, 'TRANS': 129}

  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 0.58
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 0.65 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.


  Symmetric amino acids flipped
    Residue "A GLU    8": "OE1" <-> "OE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   24": "OE1" <-> "OE2"
    Residue "A GLU   32": "OE1" <-> "OE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A PHE   67": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR   68": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU   84": "OE1" <-> "OE2"
    Residue "A TYR   89": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR   91": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ASP  116": "OD1" <-> "OD2"
    Residue "A GLU  120": "OE1" <-> "OE2"
    Residue "A GLU  123": "OE1" <-> "OE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU  133": "OE1" <-> "OE2"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'CIS': 1, 'PTRANS': 7, 'TRANS': 130}
  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 135
        1.23 -     1.43: 333
        1.43 -     1.63: 663
        1.63 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" CD  ARG A  58 "
       model="   1" pdb=" NE  ARG A  58 "
    ideal  model  delta    sigma   weight residual
    1.458  1.508 -0.050 1.40e-02 5.10e+03 1.29e+01
  bond model="   1" pdb=" CE1 HIS A  43 "
       model="   1" pdb=" NE2 HIS A  43 "
    ideal  model  delta    sigma   weight residual
    1.321  1.356 -0.035 1.00e-02 1.00e+04 1.26e+01
  bond model="   1" pdb=" CE1 HIS A 135 "
       model="   1" pdb=" NE2 HIS A 135 "
    ideal  model  delta    sigma   weight residual
    1.321  1.356 -0.035 1.00e-02 1.00e+04 1.24e+01
  bond model="   1" pdb=" CE1 HIS A 136 "
       model="   1" pdb=" NE2 HIS A 136 "
    ideal  model  delta    sigma   weight residual
    1.321  1.356 -0.035 1.00e-02 1.00e+04 1.21e+01
  bond model="   1" pdb=" CE1 HIS A 134 "
       model="   1" pdb=" NE2 HIS A 134 "
    ideal  model  delta    sigma   weight residual
    1.321  1.356 -0.035 1.00e-02 1.00e+04 1.21e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       95.74 -   102.90: 23
      102.90 -   110.07: 2094
      110.07 -   117.23: 933
      117.23 -   124.40: 932
      124.40 -   131.56: 95
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" CA  LYS A 101 "
        model="   1" pdb=" C   LYS A 101 "
        model="   1" pdb=" N   PRO A 102 "
      ideal   model   delta    sigma   weight residual
     116.90  125.91   -9.01 1.50e+00 4.44e-01 3.61e+01
  angle model="   1" pdb=" CA  ASP A 116 "
        model="   1" pdb=" C   ASP A 116 "
        model="   1" pdb=" N   PRO A 117 "
      ideal   model   delta    sigma   weight residual
     116.90  124.93   -8.03 1.50e+00 4.44e-01 2.86e+01
  angle model="   1" pdb=" CA  LYS A 113 "
        model="   1" pdb=" C   LYS A 113 "
        model="   1" pdb=" N   PRO A 114 "
      ideal   model   delta    sigma   weight residual
     116.90  124.40   -7.50 1.50e+00 4.44e-01 2.50e+01
  angle model="   1" pdb=" N   GLU A 133 "
        model="   1" pdb=" CA  GLU A 133 "
        model="   1" pdb=" CB  GLU A 133 "
      ideal   model   delta    sigma   weight residual
     110.50  118.68   -8.18 1.70e+00 3.46e-01 2.31e+01
  angle model="   1" pdb=" N   SER A 130 "
        model="   1" pdb=" CA  SER A 130 "
        model="   1" pdb=" HA  SER A 130 "
      ideal   model   delta    sigma   weight residual
     110.00   95.74   14.26 3.00e+00 1.11e-01 2.26e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    17.29: 987
       17.29 -    34.59: 33
       34.59 -    51.88: 8
       51.88 -    69.17: 2
       69.17 -    86.46: 2
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" CA  SER A  98 "
           model="   1" pdb=" C   SER A  98 "
           model="   1" pdb=" N   LEU A  99 "
           model="   1" pdb=" CA  LEU A  99 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  140.63   39.37     0      5.00e+00 4.00e-02 6.20e+01
  dihedral model="   1" pdb=" N   GLU A 133 "
           model="   1" pdb=" C   GLU A 133 "
           model="   1" pdb=" CA  GLU A 133 "
           model="   1" pdb=" CB  GLU A 133 "
      ideal   model   delta  harmonic     sigma   weight residual
     122.80  139.70  -16.90     0      2.50e+00 1.60e-01 4.57e+01
  dihedral model="   1" pdb=" C   GLU A 133 "
           model="   1" pdb=" N   GLU A 133 "
           model="   1" pdb=" CA  GLU A 133 "
           model="   1" pdb=" CB  GLU A 133 "
      ideal   model   delta  harmonic     sigma   weight residual
    -122.60 -137.07   14.47     0      2.50e+00 1.60e-01 3.35e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.001 -    0.130: 149
       0.130 -    0.258: 19
       0.258 -    0.387: 5
       0.387 -    0.516: 1
       0.516 -    0.644: 2
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  LEU A  99 "
            model="   1" pdb=" N   LEU A  99 "
            model="   1" pdb=" C   LEU A  99 "
            model="   1" pdb=" CB  LEU A  99 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    1.87    0.64 2.00e-01 2.50e+01 1.04e+01
  chirality model="   1" pdb=" CA  GLU A 133 "
            model="   1" pdb=" N   GLU A 133 "
            model="   1" pdb=" C   GLU A 133 "
            model="   1" pdb=" CB  GLU A 133 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    1.89    0.62 2.00e-01 2.50e+01 9.54e+00
  chirality model="   1" pdb=" CA  TYR A  81 "
            model="   1" pdb=" N   TYR A  81 "
            model="   1" pdb=" C   TYR A  81 "
            model="   1" pdb=" CB  TYR A  81 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.07    0.44 2.00e-01 2.50e+01 4.86e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  PHE A  45 "   -0.166 2.00e-02 2.50e+03   9.41e-02 2.66e+02
        model="   1" pdb=" CG  PHE A  45 "   -0.027 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 PHE A  45 "    0.006 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 PHE A  45 "    0.068 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 PHE A  45 "    0.042 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 PHE A  45 "   -0.018 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  PHE A  45 "   -0.045 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 PHE A  45 "    0.004 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 PHE A  45 "    0.190 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 PHE A  45 "    0.124 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 PHE A  45 "   -0.057 2.00e-02 2.50e+03
        model="   1" pdb=" HZ  PHE A  45 "   -0.121 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A 105 "    0.145 2.00e-02 2.50e+03   5.73e-02 9.85e+01
        model="   1" pdb=" CG  TYR A 105 "   -0.009 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A 105 "   -0.030 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A 105 "   -0.035 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A 105 "   -0.014 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A 105 "   -0.008 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A 105 "    0.002 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A 105 "    0.086 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A 105 "   -0.055 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A 105 "   -0.072 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A 105 "   -0.015 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A 105 "    0.004 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  68 "   -0.100 2.00e-02 2.50e+03   4.76e-02 6.78e+01
        model="   1" pdb=" CG  TYR A  68 "    0.001 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  68 "    0.019 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  68 "    0.019 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  68 "    0.020 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  68 "    0.019 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  68 "   -0.002 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  68 "   -0.107 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  68 "    0.030 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  68 "    0.030 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  68 "    0.036 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  68 "    0.034 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.72 -     2.29: 319
        2.29 -     2.87: 4966
        2.87 -     3.45: 5127
        3.45 -     4.02: 6536
        4.02 -     4.60: 9666
  Nonbonded interactions: 26614
  Sorted by model distance:
  nonbonded model="   1" pdb=" OE2 GLU A  16 "
            model="   1" pdb=" HZ2 LYS A  19 "
     model   vdw
     1.719 1.850
  nonbonded model="   1" pdb=" HZ3 LYS A  10 "
            model="   1" pdb=" OD1 ASP A  23 "
     model   vdw
     1.732 1.850
  nonbonded model="   1" pdb=" O   LYS A 101 "
            model="   1" pdb=" H   TYR A 105 "
     model   vdw
     1.876 1.850
  nonbonded model="   1" pdb=" O   GLY A  42 "
            model="   1" pdb=" HZ1 LYS A 113 "
     model   vdw
     1.886 1.850
  nonbonded model="   1" pdb=" H   PHE A  45 "
            model="   1" pdb=" HD1 PHE A  45 "
     model   vdw
     1.888 2.100
  ... (remaining 26609 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'PTRANS': 7, 'TRANS': 131}
  Time building chain proxies: 1.12, per 1000 atoms: 0.51
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (101.242, 51.868, 55.041, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.
  Time building chain proxies: 1.12, per 1000 atoms: 0.51
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (83.275, 48.651, 69.114, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.
  Time building chain proxies: 1.13, per 1000 atoms: 0.51
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (60.999, 56.224, 61.256, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'PCIS': 1, 'PTRANS': 6, 'TRANS': 131}
  Time building chain proxies: 0.97, per 1000 atoms: 0.44
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (66.236, 48.658, 90.973, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'PTRANS': 7, 'TRANS': 131}
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'PTRANS': 7, 'TRANS': 131}
  Time building chain proxies: 1.13, per 1000 atoms: 0.51
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (52.644, 41.079, 53.54, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.

  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 0.98
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 1.11 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Time building chain proxies: 1.10, per 1000 atoms: 0.50
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (60.999, 56.224, 61.256, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.
  Time building chain proxies: 0.68, per 1000 atoms: 0.31
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (55.909, 47.57, 68.131, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.
  Time building chain proxies: 1.12, per 1000 atoms: 0.51
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (57.542, 52.594, 73.775, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'PTRANS': 7, 'TRANS': 131}
  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 138
        1.23 -     1.43: 329
        1.43 -     1.63: 664
        1.63 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" CE1 HIS A 134 "
       model="   1" pdb=" NE2 HIS A 134 "
    ideal  model  delta    sigma   weight residual
    1.321  1.356 -0.035 1.00e-02 1.00e+04 1.22e+01
  bond model="   1" pdb=" CE1 HIS A 137 "
       model="   1" pdb=" NE2 HIS A 137 "
    ideal  model  delta    sigma   weight residual
    1.321  1.356 -0.035 1.00e-02 1.00e+04 1.21e+01
  bond model="   1" pdb=" CE1 HIS A 136 "
       model="   1" pdb=" NE2 HIS A 136 "
    ideal  model  delta    sigma   weight residual
    1.321  1.356 -0.035 1.00e-02 1.00e+04 1.20e+01
  bond model="   1" pdb=" CE1 HIS A 135 "
       model="   1" pdb=" NE2 HIS A 135 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.18e+01
  bond model="   1" pdb=" CE1 HIS A 139 "
       model="   1" pdb=" NE2 HIS A 139 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.16e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       93.95 -   101.42: 9
      101.42 -   108.89: 913
      108.89 -   116.35: 2093
      116.35 -   123.82: 911
      123.82 -   131.28: 151
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" N   PRO A 114 "
        model="   1" pdb=" CA  PRO A 114 "
        model="   1" pdb=" C   PRO A 114 "
      ideal   model   delta    sigma   weight residual
     112.10  127.86  -15.76 2.50e+00 1.60e-01 3.98e+01
  angle model="   1" pdb=" CA  ILE A  77 "
        model="   1" pdb=" CB  ILE A  77 "
        model="   1" pdb=" CG1 ILE A  77 "
      ideal   model   delta    sigma   weight residual
     110.40  120.52  -10.12 1.70e+00 3.46e-01 3.54e+01
  angle model="   1" pdb=" CA  ILE A  30 "
        model="   1" pdb=" CB  ILE A  30 "
        model="   1" pdb=" CG1 ILE A  30 "
      ideal   model   delta    sigma   weight residual
     110.40  120.21   -9.81 1.70e+00 3.46e-01 3.33e+01
  angle model="   1" pdb=" CA  LYS A 101 "
        model="   1" pdb=" C   LYS A 101 "
        model="   1" pdb=" N   PRO A 102 "
      ideal   model   delta    sigma   weight residual
     116.90  125.43   -8.53 1.50e+00 4.44e-01 3.23e+01
  angle model="   1" pdb=" N   ASP A  74 "
        model="   1" pdb=" CA  ASP A  74 "
        model="   1" pdb=" C   ASP A  74 "
      ideal   model   delta    sigma   weight residual
     111.00   95.46   15.54 2.80e+00 1.28e-01 3.08e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    17.42: 986
       17.42 -    34.84: 37
       34.84 -    52.26: 5
       52.26 -    69.68: 3
       69.68 -    87.10: 1
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" CA  GLU A 120 "
           model="   1" pdb=" C   GLU A 120 "
           model="   1" pdb=" N   GLY A 121 "
           model="   1" pdb=" CA  GLY A 121 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  144.17   35.83     0      5.00e+00 4.00e-02 5.14e+01
  dihedral model="   1" pdb=" N   SER A  97 "
           model="   1" pdb=" C   SER A  97 "
           model="   1" pdb=" CA  SER A  97 "
           model="   1" pdb=" CB  SER A  97 "
      ideal   model   delta  harmonic     sigma   weight residual
     122.80  138.93  -16.13     0      2.50e+00 1.60e-01 4.16e+01
  dihedral model="   1" pdb=" C   SER A  97 "
           model="   1" pdb=" N   SER A  97 "
           model="   1" pdb=" CA  SER A  97 "
           model="   1" pdb=" CB  SER A  97 "
      ideal   model   delta  harmonic     sigma   weight residual
    -122.60 -137.31   14.71     0      2.50e+00 1.60e-01 3.46e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.001 -    0.120: 138
       0.120 -    0.239: 32
       0.239 -    0.358: 2
       0.358 -    0.477: 2
       0.477 -    0.596: 2
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  SER A  97 "
            model="   1" pdb=" N   SER A  97 "
            model="   1" pdb=" C   SER A  97 "
            model="   1" pdb=" CB  SER A  97 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    1.91    0.60 2.00e-01 2.50e+01 8.87e+00
  chirality model="   1" pdb=" CA  PRO A 114 "
            model="   1" pdb=" N   PRO A 114 "
            model="   1" pdb=" C   PRO A 114 "
            model="   1" pdb=" CB  PRO A 114 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.72    2.15    0.57 2.00e-01 2.50e+01 8.11e+00
  chirality model="   1" pdb=" CG  LEU A   2 "
            model="   1" pdb=" CB  LEU A   2 "
            model="   1" pdb=" CD1 LEU A   2 "
            model="   1" pdb=" CD2 LEU A   2 "
    both_signs  ideal   model   delta    sigma   weight residual
      False     -2.59   -2.16   -0.43 2.00e-01 2.50e+01 4.55e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  68 "   -0.152 2.00e-02 2.50e+03   7.71e-02 1.78e+02
        model="   1" pdb=" CG  TYR A  68 "   -0.031 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  68 "    0.028 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  68 "    0.027 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  68 "    0.027 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  68 "    0.031 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  68 "   -0.022 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  68 "   -0.164 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  68 "    0.067 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  68 "    0.062 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  68 "    0.058 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  68 "    0.069 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A 105 "    0.001 2.00e-02 2.50e+03   4.49e-02 6.04e+01
        model="   1" pdb=" CG  TYR A 105 "   -0.022 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A 105 "    0.023 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A 105 "   -0.019 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A 105 "   -0.035 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A 105 "    0.009 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A 105 "   -0.010 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A 105 "    0.046 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A 105 "    0.093 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A 105 "   -0.035 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A 105 "   -0.089 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A 105 "    0.039 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  81 "    0.008 2.00e-02 2.50e+03   3.67e-02 4.04e+01
        model="   1" pdb=" CG  TYR A  81 "    0.024 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  81 "   -0.016 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  81 "    0.019 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  81 "    0.008 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  81 "   -0.028 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  81 "   -0.007 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  81 "    0.041 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  81 "   -0.059 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  81 "    0.049 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  81 "    0.035 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  81 "   -0.073 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.68 -     2.26: 242
        2.26 -     2.85: 4837
        2.85 -     3.43: 5242
        3.43 -     4.02: 6524
        4.02 -     4.60: 9935
  Nonbonded interactions: 26780
  Sorted by model distance:
  nonbonded model="   1" pdb=" H3  MET A   1 "
            model="   1" pdb=" OD2 ASP A  47 "
     model   vdw
     1.679 1.850
  nonbonded model="   1" pdb=" OD1 ASP A   7 "
            model="   1" pdb=" HZ2 LYS A  10 "
     model   vdw
     1.726 1.850
  nonbonded model="   1" pdb=" OE1 GLU A  55 "
            model="   1" pdb=" HE  ARG A  58 "
     model   vdw
     1.794 1.850
  nonbonded model="   1" pdb=" OE2 GLU A  55 "
            model="   1" pdb="HH21 ARG A  58 "
     model   vdw
     1.801 1.850
  nonbonded model="   1" pdb=" HB3 LYS A 113 "
            model="   1" pdb=" HD2 PRO A 114 "
     model   vdw
     1.827 2.440
  ... (remaining 26775 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.
  Time building chain proxies: 1.10, per 1000 atoms: 0.50
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (79.318, 65.622, 71.474, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'PTRANS': 7, 'TRANS': 131}

  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 1.00
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 1.14 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.


  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 0.98
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 1.13 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.


  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 0.98
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 1.11 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.


  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 1.00
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 1.13 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'PTRANS': 7, 'TRANS': 131}
  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 121
        1.23 -     1.43: 341
        1.43 -     1.62: 669
        1.62 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" CA  SER A  13 "
       model="   1" pdb=" CB  SER A  13 "
    ideal  model  delta    sigma   weight residual
    1.530  1.613 -0.083 2.00e-02 2.50e+03 1.74e+01
  bond model="   1" pdb=" N   SER A  13 "
       model="   1" pdb=" CA  SER A  13 "
    ideal  model  delta    sigma   weight residual
    1.458  1.535 -0.077 1.90e-02 2.77e+03 1.66e+01
  bond model="   1" pdb=" C   TYR A  12 "
       model="   1" pdb=" N   SER A  13 "
    ideal  model  delta    sigma   weight residual
    1.329  1.385 -0.056 1.40e-02 5.10e+03 1.58e+01
  bond model="   1" pdb=" CD  ARG A  21 "
       model="   1" pdb=" NE  ARG A  21 "
    ideal  model  delta    sigma   weight residual
    1.458  1.511 -0.053 1.40e-02 5.10e+03 1.42e+01
  bond model="   1" pdb=" CE1 HIS A  43 "
       model="   1" pdb=" NE2 HIS A  43 "
    ideal  model  delta    sigma   weight residual
    1.321  1.356 -0.035 1.00e-02 1.00e+04 1.24e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       92.26 -   101.19: 4
      101.19 -   110.13: 2137
      110.13 -   119.06: 1071
      119.06 -   128.00: 857
      128.00 -   136.93: 8
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" C   TYR A  12 "
        model="   1" pdb=" N   SER A  13 "
        model="   1" pdb=" CA  SER A  13 "
      ideal   model   delta    sigma   weight residual
     121.70  136.93  -15.23 1.80e+00 3.09e-01 7.16e+01
  angle model="   1" pdb=" CA  PHE A  15 "
        model="   1" pdb=" CB  PHE A  15 "
        model="   1" pdb=" CG  PHE A  15 "
      ideal   model   delta    sigma   weight residual
     113.80  121.37   -7.57 1.00e+00 1.00e+00 5.73e+01
  angle model="   1" pdb=" CA  ASN A  72 "
        model="   1" pdb=" CB  ASN A  72 "
        model="   1" pdb=" CG  ASN A  72 "
      ideal   model   delta    sigma   weight residual
     112.60  107.30    5.30 1.00e+00 1.00e+00 2.81e+01
  angle model="   1" pdb=" N   SER A  13 "
        model="   1" pdb=" CA  SER A  13 "
        model="   1" pdb=" HA  SER A  13 "
      ideal   model   delta    sigma   weight residual
     110.00   94.18   15.82 3.00e+00 1.11e-01 2.78e+01
  angle model="   1" pdb=" CA  ASP A  29 "
        model="   1" pdb=" CB  ASP A  29 "
        model="   1" pdb=" CG  ASP A  29 "
      ideal   model   delta    sigma   weight residual
     112.60  117.55   -4.95 1.00e+00 1.00e+00 2.45e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    14.77: 958
       14.77 -    29.54: 53
       29.54 -    44.31: 14
       44.31 -    59.08: 5
       59.08 -    73.86: 2
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" CA  GLY A  73 "
           model="   1" pdb=" C   GLY A  73 "
           model="   1" pdb=" N   ASP A  74 "
           model="   1" pdb=" CA  ASP A  74 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  142.43   37.57     0      5.00e+00 4.00e-02 5.65e+01
  dihedral model="   1" pdb=" CA  LEU A 119 "
           model="   1" pdb=" C   LEU A 119 "
           model="   1" pdb=" N   GLU A 120 "
           model="   1" pdb=" CA  GLU A 120 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  155.35   24.65     0      5.00e+00 4.00e-02 2.43e+01
  dihedral model="   1" pdb=" CA  ILE A 122 "
           model="   1" pdb=" C   ILE A 122 "
           model="   1" pdb=" N   GLU A 123 "
           model="   1" pdb=" CA  GLU A 123 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  155.41   24.59     0      5.00e+00 4.00e-02 2.42e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.000 -    0.062: 91
       0.062 -    0.123: 54
       0.123 -    0.185: 24
       0.185 -    0.246: 4
       0.246 -    0.308: 3
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  LEU A   9 "
            model="   1" pdb=" N   LEU A   9 "
            model="   1" pdb=" C   LEU A   9 "
            model="   1" pdb=" CB  LEU A   9 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.20    0.31 2.00e-01 2.50e+01 2.36e+00
  chirality model="   1" pdb=" CA  LYS A  10 "
            model="   1" pdb=" N   LYS A  10 "
            model="   1" pdb=" C   LYS A  10 "
            model="   1" pdb=" CB  LYS A  10 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.22    0.29 2.00e-01 2.50e+01 2.17e+00
  chirality model="   1" pdb=" CA  LEU A  99 "
            model="   1" pdb=" N   LEU A  99 "
            model="   1" pdb=" C   LEU A  99 "
            model="   1" pdb=" CB  LEU A  99 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.22    0.29 2.00e-01 2.50e+01 2.05e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  12 "    0.210 2.00e-02 2.50e+03   1.02e-01 3.15e+02
        model="   1" pdb=" CG  TYR A  12 "   -0.004 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  12 "   -0.070 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  12 "   -0.016 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  12 "   -0.001 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  12 "   -0.055 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  12 "    0.016 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  12 "    0.173 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  12 "   -0.161 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  12 "    0.001 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  12 "    0.034 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  12 "   -0.128 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A 105 "   -0.165 2.00e-02 2.50e+03   6.84e-02 1.40e+02
        model="   1" pdb=" CG  TYR A 105 "   -0.006 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A 105 "    0.040 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A 105 "    0.032 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A 105 "    0.011 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A 105 "    0.016 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A 105 "   -0.026 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A 105 "   -0.106 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A 105 "    0.090 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A 105 "    0.067 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A 105 "    0.016 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A 105 "    0.033 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  68 "   -0.122 2.00e-02 2.50e+03   5.65e-02 9.58e+01
        model="   1" pdb=" CG  TYR A  68 "    0.012 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  68 "    0.043 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  68 "    0.025 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  68 "   -0.024 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  68 "   -0.007 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  68 "   -0.036 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  68 "    0.018 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  68 "    0.109 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  68 "    0.054 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  68 "   -0.062 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  68 "   -0.009 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.68 -     2.27: 233
        2.27 -     2.85: 4910
        2.85 -     3.43: 5342
        3.43 -     4.02: 6966
        4.02 -     4.60: 10258
  Nonbonded interactions: 27709
  Sorted by model distance:
  nonbonded model="   1" pdb=" OE2 GLU A  16 "
            model="   1" pdb=" HZ2 LYS A  19 "
     model   vdw
     1.682 1.850
  nonbonded model="   1" pdb=" HZ1 LYS A  10 "
            model="   1" pdb=" OD1 ASP A  23 "
     model   vdw
     1.699 1.850
  nonbonded model="   1" pdb=" H   MET A 128 "
            model="   1" pdb=" H   ARG A 129 "
     model   vdw
     1.710 2.100
  nonbonded model="   1" pdb=" HB3 LEU A   3 "
            model="   1" pdb="HD13 LEU A  53 "
     model   vdw
     1.720 2.440
  nonbonded model="   1" pdb=" HZ2 LYS A  40 "
            model="   1" pdb=" OD1 ASP A 118 "
     model   vdw
     1.746 1.850
  ... (remaining 27704 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.
  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 131
        1.23 -     1.43: 341
        1.43 -     1.63: 659
        1.63 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" N   PHE A  45 "
       model="   1" pdb=" CA  PHE A  45 "
    ideal  model  delta    sigma   weight residual
    1.458  1.389  0.069 1.90e-02 2.77e+03 1.33e+01
  bond model="   1" pdb=" CB  PHE A  45 "
       model="   1" pdb=" CG  PHE A  45 "
    ideal  model  delta    sigma   weight residual
    1.502  1.418  0.084 2.30e-02 1.89e+03 1.32e+01
  bond model="   1" pdb=" CE1 HIS A 135 "
       model="   1" pdb=" NE2 HIS A 135 "
    ideal  model  delta    sigma   weight residual
    1.321  1.356 -0.035 1.00e-02 1.00e+04 1.21e+01
  bond model="   1" pdb=" CD  ARG A 129 "
       model="   1" pdb=" NE  ARG A 129 "
    ideal  model  delta    sigma   weight residual
    1.458  1.506 -0.048 1.40e-02 5.10e+03 1.19e+01
  bond model="   1" pdb=" CE1 HIS A 139 "
       model="   1" pdb=" NE2 HIS A 139 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.19e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       94.94 -   102.34: 23
      102.34 -   109.75: 1964
      109.75 -   117.15: 1078
      117.15 -   124.55: 922
      124.55 -   131.96: 90
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" CA  PHE A  45 "
        model="   1" pdb=" CB  PHE A  45 "
        model="   1" pdb=" CG  PHE A  45 "
      ideal   model   delta    sigma   weight residual
     113.80  101.95   11.85 1.00e+00 1.00e+00 1.40e+02
  angle model="   1" pdb=" CA  ASP A 116 "
        model="   1" pdb=" C   ASP A 116 "
        model="   1" pdb=" N   PRO A 117 "
      ideal   model   delta    sigma   weight residual
     116.90  128.24  -11.34 1.50e+00 4.44e-01 5.72e+01
  angle model="   1" pdb=" N   PHE A  45 "
        model="   1" pdb=" CA  PHE A  45 "
        model="   1" pdb=" CB  PHE A  45 "
      ideal   model   delta    sigma   weight residual
     110.50   97.77   12.73 1.70e+00 3.46e-01 5.61e+01
  angle model="   1" pdb=" CA  LYS A 113 "
        model="   1" pdb=" C   LYS A 113 "
        model="   1" pdb=" N   PRO A 114 "
      ideal   model   delta    sigma   weight residual
     116.90  127.03  -10.13 1.50e+00 4.44e-01 4.56e+01
  angle model="   1" pdb=" C   PHE A  15 "
        model="   1" pdb=" CA  PHE A  15 "
        model="   1" pdb=" CB  PHE A  15 "
      ideal   model   delta    sigma   weight residual
     110.10   98.03   12.07 1.90e+00 2.77e-01 4.04e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    17.03: 967
       17.03 -    34.06: 56
       34.06 -    51.09: 5
       51.09 -    68.12: 3
       68.12 -    85.16: 1
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" N   VAL A  14 "
           model="   1" pdb=" C   VAL A  14 "
           model="   1" pdb=" CA  VAL A  14 "
           model="   1" pdb=" CB  VAL A  14 "
      ideal   model   delta  harmonic     sigma   weight residual
     123.40  139.17  -15.77     0      2.50e+00 1.60e-01 3.98e+01
  dihedral model="   1" pdb=" C   VAL A  14 "
           model="   1" pdb=" N   VAL A  14 "
           model="   1" pdb=" CA  VAL A  14 "
           model="   1" pdb=" CB  VAL A  14 "
      ideal   model   delta  harmonic     sigma   weight residual
    -122.00 -136.86   14.86     0      2.50e+00 1.60e-01 3.53e+01
  dihedral model="   1" pdb=" CD2 PHE A  15 "
           model="   1" pdb=" CG  PHE A  15 "
           model="   1" pdb=" CD1 PHE A  15 "
           model="   1" pdb=" HD1 PHE A  15 "
      ideal   model   delta  harmonic     sigma   weight residual
    -180.00 -151.56  -28.44     0      5.00e+00 4.00e-02 3.23e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.000 -    0.112: 134
       0.112 -    0.223: 26
       0.223 -    0.335: 11
       0.335 -    0.446: 4
       0.446 -    0.558: 1
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  VAL A  14 "
            model="   1" pdb=" N   VAL A  14 "
            model="   1" pdb=" C   VAL A  14 "
            model="   1" pdb=" CB  VAL A  14 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.44    1.88    0.56 2.00e-01 2.50e+01 7.77e+00
  chirality model="   1" pdb=" CG  LEU A  61 "
            model="   1" pdb=" CB  LEU A  61 "
            model="   1" pdb=" CD1 LEU A  61 "
            model="   1" pdb=" CD2 LEU A  61 "
    both_signs  ideal   model   delta    sigma   weight residual
      False     -2.59   -2.15   -0.44 2.00e-01 2.50e+01 4.80e+00
  chirality model="   1" pdb=" CA  ASP A  47 "
            model="   1" pdb=" N   ASP A  47 "
            model="   1" pdb=" C   ASP A  47 "
            model="   1" pdb=" CB  ASP A  47 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.13    0.38 2.00e-01 2.50e+01 3.67e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  PHE A  15 "    0.650 2.00e-02 2.50e+03   2.79e-01 2.33e+03
        model="   1" pdb=" CG  PHE A  15 "    0.084 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 PHE A  15 "   -0.158 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 PHE A  15 "   -0.143 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 PHE A  15 "   -0.012 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 PHE A  15 "   -0.038 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  PHE A  15 "    0.139 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 PHE A  15 "   -0.413 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 PHE A  15 "   -0.364 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 PHE A  15 "   -0.015 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 PHE A  15 "   -0.084 2.00e-02 2.50e+03
        model="   1" pdb=" HZ  PHE A  15 "    0.354 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  PHE A  45 "    0.372 2.00e-02 2.50e+03   1.69e-01 8.58e+02
        model="   1" pdb=" CG  PHE A  45 "    0.073 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 PHE A  45 "   -0.069 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 PHE A  45 "   -0.092 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 PHE A  45 "   -0.044 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 PHE A  45 "   -0.014 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  PHE A  45 "    0.090 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 PHE A  45 "   -0.178 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 PHE A  45 "   -0.251 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 PHE A  45 "   -0.115 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 PHE A  45 "   -0.030 2.00e-02 2.50e+03
        model="   1" pdb=" HZ  PHE A  45 "    0.259 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A 111 "    0.230 2.00e-02 2.50e+03   1.52e-01 6.95e+02
        model="   1" pdb=" CG  TYR A 111 "   -0.097 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A 111 "   -0.003 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A 111 "   -0.130 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A 111 "   -0.052 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A 111 "    0.076 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A 111 "   -0.036 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A 111 "    0.013 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A 111 "    0.092 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A 111 "   -0.291 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A 111 "   -0.096 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A 111 "    0.294 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.71 -     2.29: 350
        2.29 -     2.87: 5053
        2.87 -     3.44: 5254
        3.44 -     4.02: 6576
        4.02 -     4.60: 9958
  Nonbonded interactions: 27191
  Sorted by model distance:
  nonbonded model="   1" pdb="HD11 ILE A   4 "
            model="   1" pdb=" HA  ARG A  58 "
     model   vdw
     1.712 2.440
  nonbonded model="   1" pdb=" OE2 GLU A   8 "
            model="   1" pdb="HH11 ARG A  58 "
     model   vdw
     1.747 1.850
  nonbonded model="   1" pdb="HD12 ILE A   4 "
            model="   1" pdb="HD13 LEU A  61 "
     model   vdw
     1.765 2.440
  nonbonded model="   1" pdb=" OE2 GLU A  16 "
            model="   1" pdb=" HZ3 LYS A  19 "
     model   vdw
     1.830 1.850
  nonbonded model="   1" pdb=" H   PHE A  45 "
            model="   1" pdb=" HB2 PHE A  45 "
     model   vdw
     1.849 2.270
  ... (remaining 27186 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.
  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 74
        1.23 -     1.43: 396
        1.43 -     1.62: 661
        1.62 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" CE1 HIS A 134 "
       model="   1" pdb=" NE2 HIS A 134 "
    ideal  model  delta    sigma   weight residual
    1.321  1.357 -0.036 1.00e-02 1.00e+04 1.29e+01
  bond model="   1" pdb=" CE1 HIS A 136 "
       model="   1" pdb=" NE2 HIS A 136 "
    ideal  model  delta    sigma   weight residual
    1.321  1.357 -0.036 1.00e-02 1.00e+04 1.28e+01
  bond model="   1" pdb=" CE1 HIS A 139 "
       model="   1" pdb=" NE2 HIS A 139 "
    ideal  model  delta    sigma   weight residual
    1.321  1.357 -0.036 1.00e-02 1.00e+04 1.26e+01
  bond model="   1" pdb=" CE1 HIS A 138 "
       model="   1" pdb=" NE2 HIS A 138 "
    ideal  model  delta    sigma   weight residual
    1.321  1.356 -0.035 1.00e-02 1.00e+04 1.24e+01
  bond model="   1" pdb=" CE1 HIS A 135 "
       model="   1" pdb=" NE2 HIS A 135 "
    ideal  model  delta    sigma   weight residual
    1.321  1.356 -0.035 1.00e-02 1.00e+04 1.22e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       93.28 -   101.40: 10
      101.40 -   109.53: 1877
      109.53 -   117.66: 1204
      117.66 -   125.78: 941
      125.78 -   133.91: 45
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" CA  ILE A  30 "
        model="   1" pdb=" CB  ILE A  30 "
        model="   1" pdb=" CG1 ILE A  30 "
      ideal   model   delta    sigma   weight residual
     110.40  122.13  -11.73 1.70e+00 3.46e-01 4.76e+01
  angle model="   1" pdb=" CA  ILE A  51 "
        model="   1" pdb=" C   ILE A  51 "
        model="   1" pdb=" N   PRO A  52 "
      ideal   model   delta    sigma   weight residual
     116.90  125.08   -8.18 1.50e+00 4.44e-01 2.98e+01
  angle model="   1" pdb=" CB  LEU A   2 "
        model="   1" pdb=" CG  LEU A   2 "
        model="   1" pdb=" HG  LEU A   2 "
      ideal   model   delta    sigma   weight residual
     109.00   93.28   15.72 3.00e+00 1.11e-01 2.75e+01
  angle model="   1" pdb=" CA  PHE A  67 "
        model="   1" pdb=" CB  PHE A  67 "
        model="   1" pdb=" CG  PHE A  67 "
      ideal   model   delta    sigma   weight residual
     113.80  108.89    4.91 1.00e+00 1.00e+00 2.42e+01
  angle model="   1" pdb=" CA  LEU A  53 "
        model="   1" pdb=" C   LEU A  53 "
        model="   1" pdb=" N   PRO A  54 "
      ideal   model   delta    sigma   weight residual
     116.90  124.22   -7.32 1.50e+00 4.44e-01 2.38e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    13.98: 952
       13.98 -    27.97: 55
       27.97 -    41.95: 15
       41.95 -    55.93: 6
       55.93 -    69.91: 4
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" CA  HIS A 138 "
           model="   1" pdb=" C   HIS A 138 "
           model="   1" pdb=" N   HIS A 139 "
           model="   1" pdb=" CA  HIS A 139 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  159.69   20.31     0      5.00e+00 4.00e-02 1.65e+01
  dihedral model="   1" pdb=" C   THR A  83 "
           model="   1" pdb=" N   THR A  83 "
           model="   1" pdb=" CA  THR A  83 "
           model="   1" pdb=" CB  THR A  83 "
      ideal   model   delta  harmonic     sigma   weight residual
    -122.00 -131.76    9.76     0      2.50e+00 1.60e-01 1.52e+01
  dihedral model="   1" pdb=" C   LEU A   3 "
           model="   1" pdb=" N   LEU A   3 "
           model="   1" pdb=" CA  LEU A   3 "
           model="   1" pdb=" CB  LEU A   3 "
      ideal   model   delta  harmonic     sigma   weight residual
    -122.60 -113.27   -9.33     0      2.50e+00 1.60e-01 1.39e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.001 -    0.096: 120
       0.096 -    0.190: 40
       0.190 -    0.285: 11
       0.285 -    0.380: 4
       0.380 -    0.475: 1
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CG  LEU A  53 "
            model="   1" pdb=" CB  LEU A  53 "
            model="   1" pdb=" CD1 LEU A  53 "
            model="   1" pdb=" CD2 LEU A  53 "
    both_signs  ideal   model   delta    sigma   weight residual
      False     -2.59   -2.11   -0.47 2.00e-01 2.50e+01 5.64e+00
  chirality model="   1" pdb=" CA  THR A  83 "
            model="   1" pdb=" N   THR A  83 "
            model="   1" pdb=" C   THR A  83 "
            model="   1" pdb=" CB  THR A  83 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.53    2.18    0.34 2.00e-01 2.50e+01 2.93e+00
  chirality model="   1" pdb=" CG  LEU A   3 "
            model="   1" pdb=" CB  LEU A   3 "
            model="   1" pdb=" CD1 LEU A   3 "
            model="   1" pdb=" CD2 LEU A   3 "
    both_signs  ideal   model   delta    sigma   weight residual
      False     -2.59   -2.92    0.33 2.00e-01 2.50e+01 2.76e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  68 "   -0.251 2.00e-02 2.50e+03   1.29e-01 5.00e+02
        model="   1" pdb=" CG  TYR A  68 "   -0.013 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  68 "    0.081 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  68 "    0.016 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  68 "    0.017 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  68 "    0.073 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  68 "   -0.011 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  68 "   -0.251 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  68 "    0.186 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  68 "   -0.003 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  68 "   -0.007 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  68 "    0.163 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  PHE A  45 "    0.183 2.00e-02 2.50e+03   7.63e-02 1.75e+02
        model="   1" pdb=" CG  PHE A  45 "   -0.000 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 PHE A  45 "   -0.032 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 PHE A  45 "   -0.056 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 PHE A  45 "   -0.010 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 PHE A  45 "    0.009 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  PHE A  45 "    0.030 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 PHE A  45 "   -0.068 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 PHE A  45 "   -0.141 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 PHE A  45 "   -0.022 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 PHE A  45 "    0.037 2.00e-02 2.50e+03
        model="   1" pdb=" HZ  PHE A  45 "    0.071 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  12 "    0.020 2.00e-02 2.50e+03   6.83e-02 1.40e+02
        model="   1" pdb=" CG  TYR A  12 "   -0.011 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  12 "    0.021 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  12 "   -0.043 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  12 "   -0.009 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  12 "    0.056 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  12 "    0.031 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  12 "   -0.079 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  12 "    0.063 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  12 "   -0.130 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  12 "   -0.056 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  12 "    0.137 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.72 -     2.30: 376
        2.30 -     2.87: 5104
        2.87 -     3.45: 5414
        3.45 -     4.02: 6765
        4.02 -     4.60: 10277
  Nonbonded interactions: 27936
  Sorted by model distance:
  nonbonded model="   1" pdb=" HZ2 LYS A  79 "
            model="   1" pdb=" OE1 GLU A  84 "
     model   vdw
     1.723 1.850
  nonbonded model="   1" pdb="HG12 ILE A   4 "
            model="   1" pdb="HD21 LEU A  62 "
     model   vdw
     1.761 2.440
  nonbonded model="   1" pdb="HG13 VAL A  18 "
            model="   1" pdb=" HE  ARG A  21 "
     model   vdw
     1.855 2.270
  nonbonded model="   1" pdb=" HA  LEU A   9 "
            model="   1" pdb="HD22 LEU A  62 "
     model   vdw
     1.887 2.440
  nonbonded model="   1" pdb=" O   ASN A  72 "
            model="   1" pdb=" H   SER A  76 "
     model   vdw
     1.897 1.850
  ... (remaining 27931 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.
  Time building chain proxies: 1.09, per 1000 atoms: 0.49
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (58.426, 49.826, 54.614, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.
  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 129
        1.23 -     1.43: 335
        1.43 -     1.63: 667
        1.63 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" CE1 HIS A  43 "
       model="   1" pdb=" NE2 HIS A  43 "
    ideal  model  delta    sigma   weight residual
    1.321  1.356 -0.035 1.00e-02 1.00e+04 1.19e+01
  bond model="   1" pdb=" CE1 HIS A 135 "
       model="   1" pdb=" NE2 HIS A 135 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.18e+01
  bond model="   1" pdb=" CE1 HIS A 139 "
       model="   1" pdb=" NE2 HIS A 139 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.18e+01
  bond model="   1" pdb=" CE1 HIS A 138 "
       model="   1" pdb=" NE2 HIS A 138 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.17e+01
  bond model="   1" pdb=" CE1 HIS A 136 "
       model="   1" pdb=" NE2 HIS A 136 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.17e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       96.09 -   103.19: 19
      103.19 -   110.29: 2159
      110.29 -   117.39: 889
      117.39 -   124.49: 908
      124.49 -   131.59: 102
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" CA  LYS A 113 "
        model="   1" pdb=" C   LYS A 113 "
        model="   1" pdb=" N   PRO A 114 "
      ideal   model   delta    sigma   weight residual
     116.90  125.69   -8.79 1.50e+00 4.44e-01 3.43e+01
  angle model="   1" pdb=" CD1 LEU A  61 "
        model="   1" pdb=" CG  LEU A  61 "
        model="   1" pdb=" CD2 LEU A  61 "
      ideal   model   delta    sigma   weight residual
     110.80  100.06   10.74 2.20e+00 2.07e-01 2.38e+01
  angle model="   1" pdb=" ND1 HIS A  43 "
        model="   1" pdb=" CG  HIS A  43 "
        model="   1" pdb=" CD2 HIS A  43 "
      ideal   model   delta    sigma   weight residual
     106.10  110.80   -4.70 1.00e+00 1.00e+00 2.21e+01
  angle model="   1" pdb=" CA  ASP A  88 "
        model="   1" pdb=" CB  ASP A  88 "
        model="   1" pdb=" CG  ASP A  88 "
      ideal   model   delta    sigma   weight residual
     112.60  107.98    4.62 1.00e+00 1.00e+00 2.14e+01
  angle model="   1" pdb=" ND1 HIS A 135 "
        model="   1" pdb=" CG  HIS A 135 "
        model="   1" pdb=" CD2 HIS A 135 "
      ideal   model   delta    sigma   weight residual
     106.10  110.40   -4.30 1.00e+00 1.00e+00 1.85e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    11.60: 939
       11.60 -    23.20: 70
       23.20 -    34.80: 13
       34.80 -    46.40: 6
       46.40 -    58.00: 4
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" N   LEU A  99 "
           model="   1" pdb=" C   LEU A  99 "
           model="   1" pdb=" CA  LEU A  99 "
           model="   1" pdb=" CB  LEU A  99 "
      ideal   model   delta  harmonic     sigma   weight residual
     122.80  136.03  -13.23     0      2.50e+00 1.60e-01 2.80e+01
  dihedral model="   1" pdb=" CA  TYR A  81 "
           model="   1" pdb=" C   TYR A  81 "
           model="   1" pdb=" N   THR A  82 "
           model="   1" pdb=" CA  THR A  82 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  156.88   23.12     0      5.00e+00 4.00e-02 2.14e+01
  dihedral model="   1" pdb=" CA  LYS A 113 "
           model="   1" pdb=" C   LYS A 113 "
           model="   1" pdb=" N   PRO A 114 "
           model="   1" pdb=" CA  PRO A 114 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  157.71   22.29     0      5.00e+00 4.00e-02 1.99e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.001 -    0.101: 121
       0.101 -    0.201: 51
       0.201 -    0.301: 3
       0.301 -    0.401: 0
       0.401 -    0.501: 1
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  LEU A  99 "
            model="   1" pdb=" N   LEU A  99 "
            model="   1" pdb=" C   LEU A  99 "
            model="   1" pdb=" CB  LEU A  99 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.01    0.50 2.00e-01 2.50e+01 6.27e+00
  chirality model="   1" pdb=" CA  ASN A  72 "
            model="   1" pdb=" N   ASN A  72 "
            model="   1" pdb=" C   ASN A  72 "
            model="   1" pdb=" CB  ASN A  72 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.24    0.27 2.00e-01 2.50e+01 1.88e+00
  chirality model="   1" pdb=" CA  THR A  92 "
            model="   1" pdb=" N   THR A  92 "
            model="   1" pdb=" C   THR A  92 "
            model="   1" pdb=" CB  THR A  92 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.53    2.29    0.24 2.00e-01 2.50e+01 1.41e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  PHE A  15 "   -0.234 2.00e-02 2.50e+03   1.26e-01 4.79e+02
        model="   1" pdb=" CG  PHE A  15 "   -0.041 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 PHE A  15 "    0.082 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 PHE A  15 "    0.020 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 PHE A  15 "   -0.012 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 PHE A  15 "    0.056 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  PHE A  15 "   -0.071 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 PHE A  15 "    0.228 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 PHE A  15 "    0.036 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 PHE A  15 "   -0.034 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 PHE A  15 "    0.165 2.00e-02 2.50e+03
        model="   1" pdb=" HZ  PHE A  15 "   -0.195 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  12 "   -0.015 2.00e-02 2.50e+03   4.13e-02 5.12e+01
        model="   1" pdb=" CG  TYR A  12 "   -0.028 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  12 "    0.014 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  12 "   -0.018 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  12 "    0.001 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  12 "    0.035 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  12 "    0.015 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  12 "   -0.074 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  12 "    0.050 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  12 "   -0.048 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  12 "   -0.016 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  12 "    0.084 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A 111 "   -0.087 2.00e-02 2.50e+03   3.87e-02 4.50e+01
        model="   1" pdb=" CG  TYR A 111 "    0.005 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A 111 "    0.016 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A 111 "    0.018 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A 111 "    0.016 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A 111 "    0.014 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A 111 "   -0.000 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A 111 "   -0.083 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A 111 "    0.025 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A 111 "    0.029 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A 111 "    0.026 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A 111 "    0.021 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.70 -     2.28: 285
        2.28 -     2.86: 5003
        2.86 -     3.44: 5226
        3.44 -     4.02: 6606
        4.02 -     4.60: 9971
  Nonbonded interactions: 27091
  Sorted by model distance:
  nonbonded model="   1" pdb=" OE2 GLU A  55 "
            model="   1" pdb="HH21 ARG A  58 "
     model   vdw
     1.701 1.850
  nonbonded model="   1" pdb=" HZ1 LYS A  10 "
            model="   1" pdb=" OD1 ASP A  23 "
     model   vdw
     1.710 1.850
  nonbonded model="   1" pdb=" OE1 GLU A  55 "
            model="   1" pdb=" HE  ARG A  58 "
     model   vdw
     1.751 1.850
  nonbonded model="   1" pdb=" HZ1 LYS A 113 "
            model="   1" pdb=" OD2 ASP A 116 "
     model   vdw
     1.764 1.850
  nonbonded model="   1" pdb=" H   TYR A  81 "
            model="   1" pdb=" H   THR A  82 "
     model   vdw
     1.785 2.100
  ... (remaining 27086 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.
  Time building chain proxies: 1.12, per 1000 atoms: 0.51
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (58.426, 49.826, 54.614, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.

  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 0.94
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 1.06 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.


  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 0.96
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 1.08 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.


  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 0.98
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 1.10 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.


  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 0.63
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 0.76 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 100
        1.23 -     1.43: 366
        1.43 -     1.62: 665
        1.62 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" CD  ARG A  21 "
       model="   1" pdb=" NE  ARG A  21 "
    ideal  model  delta    sigma   weight residual
    1.458  1.513 -0.055 1.40e-02 5.10e+03 1.55e+01
  bond model="   1" pdb=" CE1 HIS A 139 "
       model="   1" pdb=" NE2 HIS A 139 "
    ideal  model  delta    sigma   weight residual
    1.321  1.354 -0.033 1.00e-02 1.00e+04 1.07e+01
  bond model="   1" pdb=" CE1 HIS A 137 "
       model="   1" pdb=" NE2 HIS A 137 "
    ideal  model  delta    sigma   weight residual
    1.321  1.353 -0.032 1.00e-02 1.00e+04 1.04e+01
  bond model="   1" pdb=" CE1 HIS A  43 "
       model="   1" pdb=" NE2 HIS A  43 "
    ideal  model  delta    sigma   weight residual
    1.321  1.353 -0.032 1.00e-02 1.00e+04 1.04e+01
  bond model="   1" pdb=" CE1 HIS A 135 "
       model="   1" pdb=" NE2 HIS A 135 "
    ideal  model  delta    sigma   weight residual
    1.321  1.353 -0.032 1.00e-02 1.00e+04 9.94e+00
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       96.55 -   104.99: 94
      104.99 -   113.43: 2687
      113.43 -   121.86: 931
      121.86 -   130.30: 361
      130.30 -   138.74: 4
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" C   HIS A 136 "
        model="   1" pdb=" N   HIS A 137 "
        model="   1" pdb=" CA  HIS A 137 "
      ideal   model   delta    sigma   weight residual
     121.70  138.74  -17.04 1.80e+00 3.09e-01 8.96e+01
  angle model="   1" pdb=" C   HIS A 134 "
        model="   1" pdb=" N   HIS A 135 "
        model="   1" pdb=" CA  HIS A 135 "
      ideal   model   delta    sigma   weight residual
     121.70  137.96  -16.26 1.80e+00 3.09e-01 8.16e+01
  angle model="   1" pdb=" CA  ILE A  51 "
        model="   1" pdb=" C   ILE A  51 "
        model="   1" pdb=" N   PRO A  52 "
      ideal   model   delta    sigma   weight residual
     116.90  125.71   -8.81 1.50e+00 4.44e-01 3.45e+01
  angle model="   1" pdb=" N   HIS A 134 "
        model="   1" pdb=" CA  HIS A 134 "
        model="   1" pdb=" CB  HIS A 134 "
      ideal   model   delta    sigma   weight residual
     110.50  119.72   -9.22 1.70e+00 3.46e-01 2.94e+01
  angle model="   1" pdb=" O   HIS A 136 "
        model="   1" pdb=" C   HIS A 136 "
        model="   1" pdb=" N   HIS A 137 "
      ideal   model   delta    sigma   weight residual
     123.00  114.57    8.43 1.60e+00 3.91e-01 2.78e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    12.66: 938
       12.66 -    25.32: 64
       25.32 -    37.98: 15
       37.98 -    50.63: 8
       50.63 -    63.29: 7
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" CA  ASP A 116 "
           model="   1" pdb=" C   ASP A 116 "
           model="   1" pdb=" N   PRO A 117 "
           model="   1" pdb=" CA  PRO A 117 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  130.08   49.92     0      5.00e+00 4.00e-02 9.97e+01
  dihedral model="   1" pdb=" CA  PRO A 117 "
           model="   1" pdb=" C   PRO A 117 "
           model="   1" pdb=" N   ASP A 118 "
           model="   1" pdb=" CA  ASP A 118 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  150.73   29.27     0      5.00e+00 4.00e-02 3.43e+01
  dihedral model="   1" pdb=" CA  PRO A 114 "
           model="   1" pdb=" C   PRO A 114 "
           model="   1" pdb=" N   ALA A 115 "
           model="   1" pdb=" CA  ALA A 115 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  154.27   25.73     0      5.00e+00 4.00e-02 2.65e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.001 -    0.099: 115
       0.099 -    0.198: 46
       0.198 -    0.297: 12
       0.297 -    0.395: 1
       0.395 -    0.494: 2
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  THR A  83 "
            model="   1" pdb=" N   THR A  83 "
            model="   1" pdb=" C   THR A  83 "
            model="   1" pdb=" CB  THR A  83 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.53    2.03    0.49 2.00e-01 2.50e+01 6.10e+00
  chirality model="   1" pdb=" CA  HIS A 136 "
            model="   1" pdb=" N   HIS A 136 "
            model="   1" pdb=" C   HIS A 136 "
            model="   1" pdb=" CB  HIS A 136 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.09    0.42 2.00e-01 2.50e+01 4.51e+00
  chirality model="   1" pdb=" CA  HIS A 134 "
            model="   1" pdb=" N   HIS A 134 "
            model="   1" pdb=" C   HIS A 134 "
            model="   1" pdb=" CB  HIS A 134 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.19    0.32 2.00e-01 2.50e+01 2.58e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A 111 "   -0.232 2.00e-02 2.50e+03   9.21e-02 2.55e+02
        model="   1" pdb=" CG  TYR A 111 "    0.002 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A 111 "    0.053 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A 111 "    0.051 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A 111 "    0.009 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A 111 "    0.012 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A 111 "   -0.046 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A 111 "   -0.117 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A 111 "    0.117 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A 111 "    0.109 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A 111 "    0.016 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A 111 "    0.025 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  PHE A  15 "    0.198 2.00e-02 2.50e+03   8.53e-02 2.18e+02
        model="   1" pdb=" CG  PHE A  15 "    0.022 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 PHE A  15 "   -0.057 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 PHE A  15 "   -0.038 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 PHE A  15 "    0.006 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 PHE A  15 "   -0.011 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  PHE A  15 "    0.037 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 PHE A  15 "   -0.151 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 PHE A  15 "   -0.097 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 PHE A  15 "    0.027 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 PHE A  15 "   -0.026 2.00e-02 2.50e+03
        model="   1" pdb=" HZ  PHE A  15 "    0.090 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  68 "   -0.145 2.00e-02 2.50e+03   7.95e-02 1.90e+02
        model="   1" pdb=" CG  TYR A  68 "   -0.026 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  68 "    0.057 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  68 "    0.012 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  68 "   -0.034 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  68 "    0.013 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  68 "   -0.091 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  68 "   -0.022 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  68 "    0.172 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  68 "    0.036 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  68 "   -0.055 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  68 "    0.084 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.72 -     2.30: 320
        2.30 -     2.87: 4968
        2.87 -     3.45: 4963
        3.45 -     4.02: 6054
        4.02 -     4.60: 9321
  Nonbonded interactions: 25626
  Sorted by model distance:
  nonbonded model="   1" pdb="HD21 LEU A   3 "
            model="   1" pdb=" HE  ARG A  58 "
     model   vdw
     1.725 2.270
  nonbonded model="   1" pdb=" HZ3 LYS A  10 "
            model="   1" pdb=" OD1 ASP A  23 "
     model   vdw
     1.761 1.850
  nonbonded model="   1" pdb=" OE1 GLU A  16 "
            model="   1" pdb=" HZ2 LYS A  19 "
     model   vdw
     1.840 1.850
  nonbonded model="   1" pdb=" H   THR A   5 "
            model="   1" pdb=" OE1 GLU A   8 "
     model   vdw
     1.915 1.850
  nonbonded model="   1" pdb=" HA  HIS A 136 "
            model="   1" pdb=" HB3 HIS A 137 "
     model   vdw
     1.948 2.440
  ... (remaining 25621 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 1.01
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 1.14 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Time building chain proxies: 1.14, per 1000 atoms: 0.51
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (109.604, 51.322, 66.767, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.

  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 0.76
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 0.86 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 126
        1.23 -     1.43: 343
        1.43 -     1.63: 662
        1.63 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" CE1 HIS A 134 "
       model="   1" pdb=" NE2 HIS A 134 "
    ideal  model  delta    sigma   weight residual
    1.321  1.357 -0.036 1.00e-02 1.00e+04 1.31e+01
  bond model="   1" pdb=" CE1 HIS A 138 "
       model="   1" pdb=" NE2 HIS A 138 "
    ideal  model  delta    sigma   weight residual
    1.321  1.356 -0.035 1.00e-02 1.00e+04 1.20e+01
  bond model="   1" pdb=" CE1 HIS A 139 "
       model="   1" pdb=" NE2 HIS A 139 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.18e+01
  bond model="   1" pdb=" CE1 HIS A 137 "
       model="   1" pdb=" NE2 HIS A 137 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.17e+01
  bond model="   1" pdb=" CE1 HIS A 136 "
       model="   1" pdb=" NE2 HIS A 136 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.16e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       95.50 -   103.36: 22
      103.36 -   111.22: 2349
      111.22 -   119.08: 837
      119.08 -   126.95: 840
      126.95 -   134.81: 29
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" CA  ASP A 116 "
        model="   1" pdb=" C   ASP A 116 "
        model="   1" pdb=" N   PRO A 117 "
      ideal   model   delta    sigma   weight residual
     116.90  128.18  -11.28 1.50e+00 4.44e-01 5.65e+01
  angle model="   1" pdb=" C   LEU A 132 "
        model="   1" pdb=" N   GLU A 133 "
        model="   1" pdb=" CA  GLU A 133 "
      ideal   model   delta    sigma   weight residual
     121.70  134.81  -13.11 1.80e+00 3.09e-01 5.30e+01
  angle model="   1" pdb=" CA  ASP A  29 "
        model="   1" pdb=" CB  ASP A  29 "
        model="   1" pdb=" CG  ASP A  29 "
      ideal   model   delta    sigma   weight residual
     112.60  118.23   -5.63 1.00e+00 1.00e+00 3.17e+01
  angle model="   1" pdb=" CA  LEU A 132 "
        model="   1" pdb=" C   LEU A 132 "
        model="   1" pdb=" N   GLU A 133 "
      ideal   model   delta    sigma   weight residual
     116.20  126.56  -10.36 2.00e+00 2.50e-01 2.69e+01
  angle model="   1" pdb=" ND1 HIS A 134 "
        model="   1" pdb=" CG  HIS A 134 "
        model="   1" pdb=" CD2 HIS A 134 "
      ideal   model   delta    sigma   weight residual
     106.10  111.07   -4.97 1.00e+00 1.00e+00 2.47e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    13.80: 951
       13.80 -    27.60: 60
       27.60 -    41.40: 11
       41.40 -    55.20: 6
       55.20 -    69.00: 4
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" CA  HIS A 137 "
           model="   1" pdb=" C   HIS A 137 "
           model="   1" pdb=" N   HIS A 138 "
           model="   1" pdb=" CA  HIS A 138 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  111.00   69.00     0      5.00e+00 4.00e-02 1.90e+02
  dihedral model="   1" pdb=" CA  HIS A 138 "
           model="   1" pdb=" C   HIS A 138 "
           model="   1" pdb=" N   HIS A 139 "
           model="   1" pdb=" CA  HIS A 139 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  125.25   54.75     0      5.00e+00 4.00e-02 1.20e+02
  dihedral model="   1" pdb=" CA  GLY A  87 "
           model="   1" pdb=" C   GLY A  87 "
           model="   1" pdb=" N   ASP A  88 "
           model="   1" pdb=" CA  ASP A  88 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  144.28   35.72     0      5.00e+00 4.00e-02 5.10e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.001 -    0.085: 123
       0.085 -    0.170: 38
       0.170 -    0.254: 11
       0.254 -    0.338: 3
       0.338 -    0.422: 1
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  ASP A  88 "
            model="   1" pdb=" N   ASP A  88 "
            model="   1" pdb=" C   ASP A  88 "
            model="   1" pdb=" CB  ASP A  88 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.09    0.42 2.00e-01 2.50e+01 4.46e+00
  chirality model="   1" pdb=" CA  PRO A  22 "
            model="   1" pdb=" N   PRO A  22 "
            model="   1" pdb=" C   PRO A  22 "
            model="   1" pdb=" CB  PRO A  22 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.72    2.45    0.27 2.00e-01 2.50e+01 1.76e+00
  chirality model="   1" pdb=" CA  GLU A 133 "
            model="   1" pdb=" N   GLU A 133 "
            model="   1" pdb=" C   GLU A 133 "
            model="   1" pdb=" CB  GLU A 133 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.25    0.26 2.00e-01 2.50e+01 1.74e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  68 "    0.057 2.00e-02 2.50e+03   8.05e-02 1.94e+02
        model="   1" pdb=" CG  TYR A  68 "    0.031 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  68 "    0.000 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  68 "    0.002 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  68 "   -0.048 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  68 "   -0.052 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  68 "   -0.015 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  68 "    0.211 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  68 "    0.011 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  68 "    0.019 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  68 "   -0.103 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  68 "   -0.113 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  PHE A  15 "   -0.125 2.00e-02 2.50e+03   5.71e-02 9.79e+01
        model="   1" pdb=" CG  PHE A  15 "   -0.008 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 PHE A  15 "    0.028 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 PHE A  15 "    0.027 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 PHE A  15 "    0.010 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 PHE A  15 "    0.014 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  PHE A  15 "   -0.037 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 PHE A  15 "    0.064 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 PHE A  15 "    0.059 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 PHE A  15 "    0.030 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 PHE A  15 "    0.040 2.00e-02 2.50e+03
        model="   1" pdb=" HZ  PHE A  15 "   -0.102 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A 111 "   -0.096 2.00e-02 2.50e+03   3.64e-02 3.96e+01
        model="   1" pdb=" CG  TYR A 111 "    0.018 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A 111 "    0.022 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A 111 "    0.023 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A 111 "    0.007 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A 111 "    0.005 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A 111 "   -0.001 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A 111 "   -0.050 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A 111 "    0.035 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A 111 "    0.039 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A 111 "    0.001 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A 111 "   -0.003 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.74 -     2.31: 365
        2.31 -     2.88: 5070
        2.88 -     3.45: 5115
        3.45 -     4.03: 6524
        4.03 -     4.60: 10106
  Nonbonded interactions: 27180
  Sorted by model distance:
  nonbonded model="   1" pdb=" HZ1 LYS A  10 "
            model="   1" pdb=" OD1 ASP A  23 "
     model   vdw
     1.736 1.850
  nonbonded model="   1" pdb="HG23 VAL A  41 "
            model="   1" pdb=" H   HIS A  43 "
     model   vdw
     1.743 2.270
  nonbonded model="   1" pdb=" OD1 ASP A  44 "
            model="   1" pdb=" H   SER A  46 "
     model   vdw
     1.763 1.850
  nonbonded model="   1" pdb="HE21 GLN A  28 "
            model="   1" pdb=" OE2 GLU A  32 "
     model   vdw
     1.865 1.850
  nonbonded model="   1" pdb=" OD1 ASP A  47 "
            model="   1" pdb=" H   TYR A  50 "
     model   vdw
     1.884 1.850
  ... (remaining 27175 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 0.94
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 1.07 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 115
        1.23 -     1.43: 355
        1.43 -     1.62: 661
        1.62 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" CA  ILE A  78 "
       model="   1" pdb=" C   ILE A  78 "
    ideal  model  delta    sigma   weight residual
    1.525  1.406  0.119 2.10e-02 2.27e+03 3.20e+01
  bond model="   1" pdb=" CE1 HIS A 139 "
       model="   1" pdb=" NE2 HIS A 139 "
    ideal  model  delta    sigma   weight residual
    1.321  1.357 -0.036 1.00e-02 1.00e+04 1.28e+01
  bond model="   1" pdb=" CE1 HIS A 135 "
       model="   1" pdb=" NE2 HIS A 135 "
    ideal  model  delta    sigma   weight residual
    1.321  1.356 -0.035 1.00e-02 1.00e+04 1.23e+01
  bond model="   1" pdb=" CE1 HIS A 138 "
       model="   1" pdb=" NE2 HIS A 138 "
    ideal  model  delta    sigma   weight residual
    1.321  1.356 -0.035 1.00e-02 1.00e+04 1.22e+01
  bond model="   1" pdb=" CE1 HIS A 136 "
       model="   1" pdb=" NE2 HIS A 136 "
    ideal  model  delta    sigma   weight residual
    1.321  1.356 -0.035 1.00e-02 1.00e+04 1.19e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       88.97 -    97.36: 4
       97.36 -   105.75: 149
      105.75 -   114.14: 2723
      114.14 -   122.52: 886
      122.52 -   130.91: 315
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" CA  ILE A  78 "
        model="   1" pdb=" CB  ILE A  78 "
        model="   1" pdb=" CG2 ILE A  78 "
      ideal   model   delta    sigma   weight residual
     110.50  124.08  -13.58 1.70e+00 3.46e-01 6.38e+01
  angle model="   1" pdb=" CB  GLU A  16 "
        model="   1" pdb=" CG  GLU A  16 "
        model="   1" pdb=" CD  GLU A  16 "
      ideal   model   delta    sigma   weight residual
     112.60  125.47  -12.87 1.70e+00 3.46e-01 5.73e+01
  angle model="   1" pdb=" CB  ILE A  71 "
        model="   1" pdb=" CA  ILE A  71 "
        model="   1" pdb=" HA  ILE A  71 "
      ideal   model   delta    sigma   weight residual
     109.00   88.97   20.03 3.00e+00 1.11e-01 4.46e+01
  angle model="   1" pdb=" N   ILE A  78 "
        model="   1" pdb=" CA  ILE A  78 "
        model="   1" pdb=" CB  ILE A  78 "
      ideal   model   delta    sigma   weight residual
     111.50  122.24  -10.74 1.70e+00 3.46e-01 3.99e+01
  angle model="   1" pdb=" CA  MET A   1 "
        model="   1" pdb=" C   MET A   1 "
        model="   1" pdb=" N   LEU A   2 "
      ideal   model   delta    sigma   weight residual
     116.20  128.74  -12.54 2.00e+00 2.50e-01 3.93e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    22.38: 999
       22.38 -    44.76: 25
       44.76 -    67.14: 6
       67.14 -    89.52: 1
       89.52 -   111.90: 1
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" CA  HIS A 134 "
           model="   1" pdb=" C   HIS A 134 "
           model="   1" pdb=" N   HIS A 135 "
           model="   1" pdb=" CA  HIS A 135 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00   68.10  111.90     0      5.00e+00 4.00e-02 5.01e+02
  dihedral model="   1" pdb=" CA  GLU A 133 "
           model="   1" pdb=" C   GLU A 133 "
           model="   1" pdb=" N   HIS A 134 "
           model="   1" pdb=" CA  HIS A 134 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  133.74   46.26     0      5.00e+00 4.00e-02 8.56e+01
  dihedral model="   1" pdb=" C   ILE A  71 "
           model="   1" pdb=" N   ILE A  71 "
           model="   1" pdb=" CA  ILE A  71 "
           model="   1" pdb=" CB  ILE A  71 "
      ideal   model   delta  harmonic     sigma   weight residual
    -122.00 -144.87   22.87     0      2.50e+00 1.60e-01 8.37e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.000 -    0.165: 156
       0.165 -    0.329: 16
       0.329 -    0.494: 3
       0.494 -    0.659: 0
       0.659 -    0.823: 1
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  ILE A  71 "
            model="   1" pdb=" N   ILE A  71 "
            model="   1" pdb=" C   ILE A  71 "
            model="   1" pdb=" CB  ILE A  71 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.43    1.61    0.82 2.00e-01 2.50e+01 1.69e+01
  chirality model="   1" pdb=" CA  HIS A 134 "
            model="   1" pdb=" N   HIS A 134 "
            model="   1" pdb=" C   HIS A 134 "
            model="   1" pdb=" CB  HIS A 134 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.05    0.46 2.00e-01 2.50e+01 5.39e+00
  chirality model="   1" pdb=" CB  ILE A  71 "
            model="   1" pdb=" CA  ILE A  71 "
            model="   1" pdb=" CG1 ILE A  71 "
            model="   1" pdb=" CG2 ILE A  71 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.64    2.20    0.45 2.00e-01 2.50e+01 4.97e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  PHE A  15 "    0.163 2.00e-02 2.50e+03   7.02e-02 1.48e+02
        model="   1" pdb=" CG  PHE A  15 "    0.005 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 PHE A  15 "   -0.052 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 PHE A  15 "   -0.026 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 PHE A  15 "    0.010 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 PHE A  15 "   -0.015 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  PHE A  15 "    0.029 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 PHE A  15 "   -0.132 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 PHE A  15 "   -0.055 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 PHE A  15 "    0.037 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 PHE A  15 "   -0.036 2.00e-02 2.50e+03
        model="   1" pdb=" HZ  PHE A  15 "    0.072 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  HIS A 135 "   -0.115 2.00e-02 2.50e+03   6.81e-02 9.27e+01
        model="   1" pdb=" CG  HIS A 135 "    0.099 2.00e-02 2.50e+03
        model="   1" pdb=" ND1 HIS A 135 "    0.091 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 HIS A 135 "    0.020 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 HIS A 135 "   -0.010 2.00e-02 2.50e+03
        model="   1" pdb=" NE2 HIS A 135 "   -0.049 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 HIS A 135 "    0.014 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 HIS A 135 "   -0.050 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  12 "    0.138 2.00e-02 2.50e+03   5.53e-02 9.17e+01
        model="   1" pdb=" CG  TYR A  12 "   -0.089 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  12 "   -0.045 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  12 "   -0.031 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  12 "    0.008 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  12 "   -0.008 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  12 "   -0.008 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  12 "    0.032 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  12 "   -0.051 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  12 "   -0.007 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  12 "    0.054 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  12 "    0.007 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.52 -     2.14: 93
        2.14 -     2.75: 4002
        2.75 -     3.37: 5843
        3.37 -     3.98: 6958
        3.98 -     4.60: 10357
  Nonbonded interactions: 27253
  Sorted by model distance:
  nonbonded model="   1" pdb="HD22 LEU A   9 "
            model="   1" pdb="HG21 VAL A  18 "
     model   vdw
     1.522 2.440
  nonbonded model="   1" pdb=" HZ1 LYS A  79 "
            model="   1" pdb=" OD2 ASP A  95 "
     model   vdw
     1.648 1.850
  nonbonded model="   1" pdb=" HB3 LEU A   3 "
            model="   1" pdb="HD22 LEU A  53 "
     model   vdw
     1.675 2.440
  nonbonded model="   1" pdb="HD13 LEU A   9 "
            model="   1" pdb="HD11 LEU A  26 "
     model   vdw
     1.699 2.440
  nonbonded model="   1" pdb=" H   SER A  17 "
            model="   1" pdb=" HG3 GLN A  66 "
     model   vdw
     1.740 2.270
  ... (remaining 27248 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.
  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 72
        1.23 -     1.43: 397
        1.43 -     1.62: 662
        1.62 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" CD  ARG A 127 "
       model="   1" pdb=" NE  ARG A 127 "
    ideal  model  delta    sigma   weight residual
    1.458  1.513 -0.055 1.40e-02 5.10e+03 1.55e+01
  bond model="   1" pdb=" CE1 HIS A 137 "
       model="   1" pdb=" NE2 HIS A 137 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.13e+01
  bond model="   1" pdb=" CA  GLY A 121 "
       model="   1" pdb=" C   GLY A 121 "
    ideal  model  delta    sigma   weight residual
    1.516  1.457  0.059 1.80e-02 3.09e+03 1.06e+01
  bond model="   1" pdb=" CE1 HIS A 139 "
       model="   1" pdb=" NE2 HIS A 139 "
    ideal  model  delta    sigma   weight residual
    1.321  1.353 -0.032 1.00e-02 1.00e+04 1.00e+01
  bond model="   1" pdb=" CE1 HIS A 135 "
       model="   1" pdb=" NE2 HIS A 135 "
    ideal  model  delta    sigma   weight residual
    1.321  1.353 -0.032 1.00e-02 1.00e+04 9.97e+00
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       96.72 -   104.04: 39
      104.04 -   111.37: 2396
      111.37 -   118.70: 750
      118.70 -   126.03: 855
      126.03 -   133.36: 37
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" CA  ASP A  36 "
        model="   1" pdb=" CB  ASP A  36 "
        model="   1" pdb=" CG  ASP A  36 "
      ideal   model   delta    sigma   weight residual
     112.60  105.22    7.38 1.00e+00 1.00e+00 5.45e+01
  angle model="   1" pdb=" C   HIS A 136 "
        model="   1" pdb=" N   HIS A 137 "
        model="   1" pdb=" CA  HIS A 137 "
      ideal   model   delta    sigma   weight residual
     121.70  133.36  -11.66 1.80e+00 3.09e-01 4.20e+01
  angle model="   1" pdb=" CA  VAL A  18 "
        model="   1" pdb=" CB  VAL A  18 "
        model="   1" pdb=" CG1 VAL A  18 "
      ideal   model   delta    sigma   weight residual
     110.40  119.51   -9.11 1.70e+00 3.46e-01 2.87e+01
  angle model="   1" pdb=" CA  LYS A 113 "
        model="   1" pdb=" C   LYS A 113 "
        model="   1" pdb=" N   PRO A 114 "
      ideal   model   delta    sigma   weight residual
     116.90  124.73   -7.83 1.50e+00 4.44e-01 2.72e+01
  angle model="   1" pdb=" CA  ILE A  51 "
        model="   1" pdb=" CB  ILE A  51 "
        model="   1" pdb=" CG2 ILE A  51 "
      ideal   model   delta    sigma   weight residual
     110.50  118.79   -8.29 1.70e+00 3.46e-01 2.38e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    11.95: 914
       11.95 -    23.91: 90
       23.91 -    35.86: 15
       35.86 -    47.81: 8
       47.81 -    59.76: 5
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" CA  HIS A 138 "
           model="   1" pdb=" C   HIS A 138 "
           model="   1" pdb=" N   HIS A 139 "
           model="   1" pdb=" CA  HIS A 139 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  120.24   59.76     0      5.00e+00 4.00e-02 1.43e+02
  dihedral model="   1" pdb=" CA  ARG A 129 "
           model="   1" pdb=" C   ARG A 129 "
           model="   1" pdb=" N   SER A 130 "
           model="   1" pdb=" CA  SER A 130 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  140.75   39.25     0      5.00e+00 4.00e-02 6.16e+01
  dihedral model="   1" pdb=" CA  HIS A 136 "
           model="   1" pdb=" C   HIS A 136 "
           model="   1" pdb=" N   HIS A 137 "
           model="   1" pdb=" CA  HIS A 137 "
      ideal   model   delta  harmonic     sigma   weight residual
       0.00   35.66  -35.66     0      5.00e+00 4.00e-02 5.09e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.001 -    0.104: 129
       0.104 -    0.207: 33
       0.207 -    0.310: 8
       0.310 -    0.413: 2
       0.413 -    0.516: 4
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  ASP A  95 "
            model="   1" pdb=" N   ASP A  95 "
            model="   1" pdb=" C   ASP A  95 "
            model="   1" pdb=" CB  ASP A  95 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    1.99    0.52 2.00e-01 2.50e+01 6.66e+00
  chirality model="   1" pdb=" CA  SER A 130 "
            model="   1" pdb=" N   SER A 130 "
            model="   1" pdb=" C   SER A 130 "
            model="   1" pdb=" CB  SER A 130 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.02    0.49 2.00e-01 2.50e+01 5.95e+00
  chirality model="   1" pdb=" CA  ASP A  88 "
            model="   1" pdb=" N   ASP A  88 "
            model="   1" pdb=" C   ASP A  88 "
            model="   1" pdb=" CB  ASP A  88 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.06    0.45 2.00e-01 2.50e+01 4.99e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A 105 "    0.235 2.00e-02 2.50e+03   1.15e-01 3.96e+02
        model="   1" pdb=" CG  TYR A 105 "    0.036 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A 105 "   -0.078 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A 105 "   -0.023 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A 105 "    0.018 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A 105 "   -0.042 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A 105 "    0.073 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A 105 "    0.136 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A 105 "   -0.217 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A 105 "   -0.050 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A 105 "    0.044 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A 105 "   -0.133 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  PHE A  15 "    0.135 2.00e-02 2.50e+03   8.63e-02 2.23e+02
        model="   1" pdb=" CG  PHE A  15 "    0.030 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 PHE A  15 "   -0.001 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 PHE A  15 "   -0.055 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 PHE A  15 "   -0.045 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 PHE A  15 "    0.009 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  PHE A  15 "    0.049 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 PHE A  15 "    0.008 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 PHE A  15 "   -0.156 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 PHE A  15 "   -0.137 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 PHE A  15 "    0.025 2.00e-02 2.50e+03
        model="   1" pdb=" HZ  PHE A  15 "    0.138 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  68 "   -0.094 2.00e-02 2.50e+03   6.89e-02 1.43e+02
        model="   1" pdb=" CG  TYR A  68 "   -0.016 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  68 "    0.004 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  68 "    0.020 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  68 "    0.042 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  68 "    0.027 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  68 "   -0.020 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  68 "   -0.166 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  68 "   -0.008 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  68 "    0.040 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  68 "    0.108 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  68 "    0.063 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.67 -     2.25: 226
        2.25 -     2.84: 4717
        2.84 -     3.43: 5479
        3.43 -     4.01: 6689
        4.01 -     4.60: 10103
  Nonbonded interactions: 27214
  Sorted by model distance:
  nonbonded model="   1" pdb=" OE1 GLU A  75 "
            model="   1" pdb=" HZ2 LYS A  79 "
     model   vdw
     1.666 1.850
  nonbonded model="   1" pdb=" HE1 TYR A  68 "
            model="   1" pdb="HD21 ASN A  72 "
     model   vdw
     1.744 2.100
  nonbonded model="   1" pdb=" OE1 GLU A  55 "
            model="   1" pdb=" HE  ARG A  58 "
     model   vdw
     1.746 1.850
  nonbonded model="   1" pdb=" OE1 GLU A  49 "
            model="   1" pdb=" H   GLU A  49 "
     model   vdw
     1.766 1.850
  nonbonded model="   1" pdb=" OE2 GLU A  55 "
            model="   1" pdb="HH21 ARG A  58 "
     model   vdw
     1.784 1.850
  ... (remaining 27209 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.
  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 140
        1.23 -     1.43: 334
        1.43 -     1.63: 657
        1.63 -     1.83: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" CE1 HIS A 139 "
       model="   1" pdb=" NE2 HIS A 139 "
    ideal  model  delta    sigma   weight residual
    1.321  1.358 -0.037 1.00e-02 1.00e+04 1.36e+01
  bond model="   1" pdb=" CE1 HIS A 137 "
       model="   1" pdb=" NE2 HIS A 137 "
    ideal  model  delta    sigma   weight residual
    1.321  1.357 -0.036 1.00e-02 1.00e+04 1.31e+01
  bond model="   1" pdb=" CE1 HIS A 135 "
       model="   1" pdb=" NE2 HIS A 135 "
    ideal  model  delta    sigma   weight residual
    1.321  1.357 -0.036 1.00e-02 1.00e+04 1.31e+01
  bond model="   1" pdb=" CE1 HIS A  43 "
       model="   1" pdb=" NE2 HIS A  43 "
    ideal  model  delta    sigma   weight residual
    1.321  1.356 -0.035 1.00e-02 1.00e+04 1.25e+01
  bond model="   1" pdb=" CE1 HIS A 134 "
       model="   1" pdb=" NE2 HIS A 134 "
    ideal  model  delta    sigma   weight residual
    1.321  1.356 -0.035 1.00e-02 1.00e+04 1.22e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       96.86 -   104.88: 69
      104.88 -   112.89: 2614
      112.89 -   120.91: 852
      120.91 -   128.93: 534
      128.93 -   136.95: 8
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" C   HIS A 136 "
        model="   1" pdb=" N   HIS A 137 "
        model="   1" pdb=" CA  HIS A 137 "
      ideal   model   delta    sigma   weight residual
     121.70  136.95  -15.25 1.80e+00 3.09e-01 7.18e+01
  angle model="   1" pdb=" CA  HIS A 136 "
        model="   1" pdb=" CB  HIS A 136 "
        model="   1" pdb=" CG  HIS A 136 "
      ideal   model   delta    sigma   weight residual
     113.80  120.46   -6.66 1.00e+00 1.00e+00 4.43e+01
  angle model="   1" pdb=" C   HIS A 134 "
        model="   1" pdb=" N   HIS A 135 "
        model="   1" pdb=" CA  HIS A 135 "
      ideal   model   delta    sigma   weight residual
     121.70  132.50  -10.80 1.80e+00 3.09e-01 3.60e+01
  angle model="   1" pdb=" CA  LYS A 113 "
        model="   1" pdb=" C   LYS A 113 "
        model="   1" pdb=" N   PRO A 114 "
      ideal   model   delta    sigma   weight residual
     116.90  125.88   -8.98 1.50e+00 4.44e-01 3.59e+01
  angle model="   1" pdb=" CA  HIS A 135 "
        model="   1" pdb=" CB  HIS A 135 "
        model="   1" pdb=" CG  HIS A 135 "
      ideal   model   delta    sigma   weight residual
     113.80  119.58   -5.78 1.00e+00 1.00e+00 3.34e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    23.24: 998
       23.24 -    46.49: 28
       46.49 -    69.73: 5
       69.73 -    92.98: 0
       92.98 -   116.22: 1
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" CA  SER A 130 "
           model="   1" pdb=" C   SER A 130 "
           model="   1" pdb=" N   ILE A 131 "
           model="   1" pdb=" CA  ILE A 131 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00   63.78  116.22     0      5.00e+00 4.00e-02 5.40e+02
  dihedral model="   1" pdb=" CA  HIS A 134 "
           model="   1" pdb=" C   HIS A 134 "
           model="   1" pdb=" N   HIS A 135 "
           model="   1" pdb=" CA  HIS A 135 "
      ideal   model   delta  harmonic     sigma   weight residual
       0.00   35.11  -35.11     0      5.00e+00 4.00e-02 4.93e+01
  dihedral model="   1" pdb=" N   HIS A 136 "
           model="   1" pdb=" C   HIS A 136 "
           model="   1" pdb=" CA  HIS A 136 "
           model="   1" pdb=" CB  HIS A 136 "
      ideal   model   delta  harmonic     sigma   weight residual
     122.80  139.56  -16.76     0      2.50e+00 1.60e-01 4.49e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.000 -    0.112: 137
       0.112 -    0.223: 33
       0.223 -    0.335: 3
       0.335 -    0.447: 2
       0  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 135
        1.23 -     1.43: 332
        1.43 -     1.63: 664
        1.63 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" C   PRO A  52 "
       model="   1" pdb=" N   LEU A  53 "
    ideal  model  delta    sigma   weight residual
    1.329  1.381 -0.052 1.40e-02 5.10e+03 1.38e+01
  bond model="   1" pdb=" CE1 HIS A 138 "
       model="   1" pdb=" NE2 HIS A 138 "
    ideal  model  delta    sigma   weight residual
    1.321  1.356 -0.035 1.00e-02 1.00e+04 1.24e+01
  bond model="   1" pdb=" CE1 HIS A 134 "
       model="   1" pdb=" NE2 HIS A 134 "
    ideal  model  delta    sigma   weight residual
    1.321  1.356 -0.035 1.00e-02 1.00e+04 1.21e+01
  bond model="   1" pdb=" CE1 HIS A 137 "
       model="   1" pdb=" NE2 HIS A 137 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.19e+01
  bond model="   1" pdb=" CE1 HIS A 139 "
       model="   1" pdb=" NE2 HIS A 139 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.15e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       96.54 -   103.53: 29
      103.53 -   110.53: 2208
      110.53 -   117.53: 858
      117.53 -   124.53: 904
      124.53 -   131.53: 78
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" N   GLU A  55 "
        model="   1" pdb=" CA  GLU A  55 "
        model="   1" pdb=" CB  GLU A  55 "
      ideal   model   delta    sigma   weight residual
     110.50  120.11   -9.61 1.70e+00 3.46e-01 3.20e+01
  angle model="   1" pdb=" N   ALA A 124 "
        model="   1" pdb=" CA  ALA A 124 "
        model="   1" pdb=" CB  ALA A 124 "
      ideal   model   delta    sigma   weight residual
     110.40  117.94   -7.54 1.50e+00 4.44e-01 2.53e+01
  angle model="   1" pdb=" CA  THR A  92 "
        model="   1" pdb=" CB  THR A  92 "
        model="   1" pdb=" CG2 THR A  92 "
      ideal   model   delta    sigma   weight residual
     110.50  118.54   -8.04 1.70e+00 3.46e-01 2.24e+01
  angle model="   1" pdb=" ND1 HIS A 138 "
        model="   1" pdb=" CG  HIS A 138 "
        model="   1" pdb=" CD2 HIS A 138 "
      ideal   model   delta    sigma   weight residual
     106.10  110.64   -4.54 1.00e+00 1.00e+00 2.06e+01
  angle model="   1" pdb=" ND1 HIS A 135 "
        model="   1" pdb=" CG  HIS A 135 "
        model="   1" pdb=" CD2 HIS A 135 "
      ideal   model   delta    sigma   weight residual
     106.10  110.56   -4.46 1.00e+00 1.00e+00 1.99e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    14.62: 963
       14.62 -    29.25: 46
       29.25 -    43.87: 10
       43.87 -    58.49: 8
       58.49 -    73.12: 5
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" CA  ILE A 122 "
           model="   1" pdb=" C   ILE A 122 "
           model="   1" pdb=" N   GLU A 123 "
           model="   1" pdb=" CA  GLU A 123 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  152.53   27.47     0      5.00e+00 4.00e-02 3.02e+01
  dihedral model="   1" pdb=" CA  GLY A 121 "
           model="   1" pdb=" C   GLY A 121 "
           model="   1" pdb=" N   ILE A 122 "
           model="   1" pdb=" CA  ILE A 122 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  152.81   27.19     0      5.00e+00 4.00e-02 2.96e+01
  dihedral model="   1" pdb=" N   LYS A 125 "
           model="   1" pdb=" C   LYS A 125 "
           model="   1" pdb=" CA  LYS A 125 "
           model="   1" pdb=" CB  LYS A 125 "
      ideal   model   delta  harmonic     sigma   weight residual
     122.80  133.94  -11.14     0      2.50e+00 1.60e-01 1.99e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.001 -    0.087: 119
       0.087 -    0.174: 45
       0.174 -    0.260: 5
       0.260 -    0.347: 3
       0.347 -    0.433: 4
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  THR A  83 "
            model="   1" pdb=" N   THR A  83 "
            model="   1" pdb=" C   THR A  83 "
            model="   1" pdb=" CB  THR A  83 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.53    2.09    0.43 2.00e-01 2.50e+01 4.69e+00
  chirality model="   1" pdb=" CA  LYS A 125 "
            model="   1" pdb=" N   LYS A 125 "
            model="   1" pdb=" C   LYS A 125 "
            model="   1" pdb=" CB  LYS A 125 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.08    0.43 2.00e-01 2.50e+01 4.61e+00
  chirality model="   1" pdb=" CA  THR A  92 "
            model="   1" pdb=" N   THR A  92 "
            model="   1" pdb=" C   THR A  92 "
            model="   1" pdb=" CB  THR A  92 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.53    2.17    0.36 2.00e-01 2.50e+01 3.20e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  68 "    0.010 2.00e-02 2.50e+03   5.51e-02 9.11e+01
        model="   1" pdb=" CG  TYR A  68 "    0.028 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  68 "    0.024 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  68 "   -0.012 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  68 "   -0.046 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  68 "   -0.009 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  68 "   -0.005 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  68 "    0.109 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  68 "    0.069 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  68 "   -0.040 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  68 "   -0.120 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  68 "   -0.009 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  PHE A  45 "   -0.094 2.00e-02 2.50e+03   3.61e-02 3.90e+01
        model="   1" pdb=" CG  PHE A  45 "    0.029 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 PHE A  45 "    0.027 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 PHE A  45 "    0.023 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 PHE A  45 "   -0.004 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 PHE A  45 "    0.000 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  PHE A  45 "   -0.011 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 PHE A  45 "    0.048 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 PHE A  45 "    0.035 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 PHE A  45 "   -0.022 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 PHE A  45 "   -0.008 2.00e-02 2.50e+03
        model="   1" pdb=" HZ  PHE A  45 "   -0.023 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A 105 "    0.071 2.00e-02 2.50e+03   3.57e-02 3.82e+01
        model="   1" pdb=" CG  TYR A 105 "   -0.025 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A 105 "   -0.025 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A 105 "   -0.018 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A 105 "    0.019 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A 105 "    0.011 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A 105 "    0.036 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A 105 "   -0.033 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A 105 "   -0.056 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A 105 "   -0.033 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A 105 "    0.038 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A 105 "    0.014 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.76 -     2.33: 462
        2.33 -     2.90: 504.447 -    0.558: 1
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  HIS A 136 "
            model="   1" pdb=" N   HIS A 136 "
            model="   1" pdb=" C   HIS A 136 "
            model="   1" pdb=" CB  HIS A 136 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    1.95    0.56 2.00e-01 2.50e+01 7.79e+00
  chirality model="   1" pdb=" CA  ASP A  95 "
            model="   1" pdb=" N   ASP A  95 "
            model="   1" pdb=" C   ASP A  95 "
            model="   1" pdb=" CB  ASP A  95 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.11    0.40 2.00e-01 2.50e+01 4.08e+00
  chirality model="   1" pdb=" CA  MET A 128 "
            model="   1" pdb=" N   MET A 128 "
            model="   1" pdb=" C   MET A 128 "
            model="   1" pdb=" CB  MET A 128 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.17    0.34 2.00e-01 2.50e+01 2.91e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  PHE A  45 "   -0.447 2.00e-02 2.50e+03   2.39e-01 1.71e+03
        model="   1" pdb=" CG  PHE A  45 "   -0.021 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 PHE A  45 "    0.186 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 PHE A  45 "    0.022 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 PHE A  45 "   -0.065 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 PHE A  45 "    0.096 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  PHE A  45 "   -0.098 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 PHE A  45 "    0.496 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 PHE A  45 "    0.002 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 PHE A  45 "   -0.205 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 PHE A  45 "    0.280 2.00e-02 2.50e+03
        model="   1" pdb=" HZ  PHE A  45 "   -0.245 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A 111 "   -0.225 2.00e-02 2.50e+03   9.78e-02 2.87e+02
        model="   1" pdb=" CG  TYR A 111 "    0.001 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A 111 "    0.050 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A 111 "    0.041 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A 111 "    0.025 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A 111 "    0.029 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A 111 "   -0.048 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A 111 "   -0.179 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A 111 "    0.099 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A 111 "    0.077 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A 111 "    0.058 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A 111 "    0.072 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  HIS A 137 "    0.120 2.00e-02 2.50e+03   7.11e-02 1.01e+02
        model="   1" pdb=" CG  HIS A 137 "   -0.107 2.00e-02 2.50e+03
        model="   1" pdb=" ND1 HIS A 137 "   -0.094 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 HIS A 137 "   -0.021 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 HIS A 137 "    0.010 2.00e-02 2.50e+03
        model="   1" pdb=" NE2 HIS A 137 "    0.049 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 HIS A 137 "   -0.010 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 HIS A 137 "    0.053 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.74 -     2.31: 377
        2.31 -     2.88: 5042
        2.88 -     3.45: 5094
        3.45 -     4.03: 6534
        4.03 -     4.60: 9893
  Nonbonded interactions: 26940
  Sorted by model distance:
  nonbonded model="   1" pdb=" HZ2 LYS A  63 "
            model="   1" pdb=" OE1 GLU A  84 "
     model   vdw
     1.737 1.850
  nonbonded model="   1" pdb=" OD2 ASP A  36 "
            model="   1" pdb=" HH  TYR A  68 "
     model   vdw
     1.773 1.850
  nonbonded model="   1" pdb=" OE1 GLU A  49 "
            model="   1" pdb=" H   GLU A  49 "
     model   vdw
     1.814 1.850
  nonbonded model="   1" pdb=" H   VAL A  57 "
            model="   1" pdb="HG23 VAL A  57 "
     model   vdw
     1.828 2.270
  nonbonded model="   1" pdb="HE21 GLN A 100 "
            model="   1" pdb=" HB2 TYR A 105 "
     model   vdw
     1.843 2.270
  ... (remaining 26935 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.
9
        2.90 -     3.46: 5157
        3.46 -     4.03: 6605
        4.03 -     4.60: 9756
  Nonbonded interactions: 27029
  Sorted by model distance:
  nonbonded model="   1" pdb="HE21 GLN A  28 "
            model="   1" pdb=" OE2 GLU A  32 "
     model   vdw
     1.761 1.850
  nonbonded model="   1" pdb="HD22 LEU A  99 "
            model="   1" pdb=" HB3 GLU A 120 "
     model   vdw
     1.850 2.440
  nonbonded model="   1" pdb=" HZ1 LYS A  40 "
            model="   1" pdb=" OD1 ASP A 118 "
     model   vdw
     1.856 1.850
  nonbonded model="   1" pdb=" O   LEU A  53 "
            model="   1" pdb=" HE  ARG A  58 "
     model   vdw
     1.873 1.850
  nonbonded model="   1" pdb=" HB2 GLU A  55 "
            model="   1" pdb=" H   THR A  56 "
     model   vdw
     1.897 2.270
  ... (remaining 27024 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.
  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 106
        1.23 -     1.43: 356
        1.43 -     1.63: 669
        1.63 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" CE1 HIS A 134 "
       model="   1" pdb=" NE2 HIS A 134 "
    ideal  model  delta    sigma   weight residual
    1.321  1.356 -0.035 1.00e-02 1.00e+04 1.25e+01
  bond model="   1" pdb=" CE1 HIS A 139 "
       model="   1" pdb=" NE2 HIS A 139 "
    ideal  model  delta    sigma   weight residual
    1.321  1.356 -0.035 1.00e-02 1.00e+04 1.22e+01
  bond model="   1" pdb=" CE1 HIS A 135 "
       model="   1" pdb=" NE2 HIS A 135 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.19e+01
  bond model="   1" pdb=" CE1 HIS A 137 "
       model="   1" pdb=" NE2 HIS A 137 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.18e+01
  bond model="   1" pdb=" CE1 HIS A 136 "
       model="   1" pdb=" NE2 HIS A 136 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.17e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       96.99 -   104.67: 70
      104.67 -   112.35: 2526
      112.35 -   120.03: 808
      120.03 -   127.71: 660
      127.71 -   135.40: 13
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" CA  ILE A  51 "
        model="   1" pdb=" C   ILE A  51 "
        model="   1" pdb=" N   PRO A  52 "
      ideal   model   delta    sigma   weight residual
     116.90  129.01  -12.11 1.50e+00 4.44e-01 6.51e+01
  angle model="   1" pdb=" CA  ASP A  29 "
        model="   1" pdb=" CB  ASP A  29 "
        model="   1" pdb=" CG  ASP A  29 "
      ideal   model   delta    sigma   weight residual
     112.60  120.04   -7.44 1.00e+00 1.00e+00 5.53e+01
  angle model="   1" pdb=" N   SER A  97 "
        model="   1" pdb=" CA  SER A  97 "
        model="   1" pdb=" CB  SER A  97 "
      ideal   model   delta    sigma   weight residual
     110.50  121.08  -10.58 1.70e+00 3.46e-01 3.87e+01
  angle model="   1" pdb=" O   ILE A  51 "
        model="   1" pdb=" C   ILE A  51 "
        model="   1" pdb=" N   PRO A  52 "
      ideal   model   delta    sigma   weight residual
     123.00  113.75    9.25 1.60e+00 3.91e-01 3.35e+01
  angle model="   1" pdb=" CA  LYS A 113 "
        model="   1" pdb=" C   LYS A 113 "
        model="   1" pdb=" N   PRO A 114 "
      ideal   model   delta    sigma   weight residual
     116.90  125.57   -8.67 1.50e+00 4.44e-01 3.34e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    16.25: 990
       16.25 -    32.50: 26
       32.50 -    48.74: 11
       48.74 -    64.99: 4
       64.99 -    81.24: 1
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" C   ILE A  51 "
           model="   1" pdb=" N   ILE A  51 "
           model="   1" pdb=" CA  ILE A  51 "
           model="   1" pdb=" CB  ILE A  51 "
      ideal   model   delta  harmonic     sigma   weight residual
    -122.00 -137.79   15.79     0      2.50e+00 1.60e-01 3.99e+01
  dihedral model="   1" pdb=" N   SER A  97 "
           model="   1" pdb=" C   SER A  97 "
           model="   1" pdb=" CA  SER A  97 "
           model="   1" pdb=" CB  SER A  97 "
      ideal   model   delta  harmonic     sigma   weight residual
     122.80  136.50  -13.70     0      2.50e+00 1.60e-01 3.00e+01
  dihedral model="   1" pdb=" N   ILE A  51 "
           model="   1" pdb=" C   ILE A  51 "
           model="   1" pdb=" CA  ILE A  51 "
           model="   1" pdb=" CB  ILE A  51 "
      ideal   model   delta  harmonic     sigma   weight residual
     123.40  133.49  -10.09     0      2.50e+00 1.60e-01 1.63e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.001 -    0.084: 109
       0.084 -    0.167: 41
       0.167 -    0.250: 18
       0.250 -    0.333: 6
       0.333 -    0.416: 2
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  SER A  97 "
            model="   1" pdb=" N   SER A  97 "
            model="   1" pdb=" C   SER A  97 "
            model="   1" pdb=" CB  SER A  97 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.09    0.42 2.00e-01 2.50e+01 4.32e+00
  chirality model="   1" pdb=" CA  ILE A  51 "
            model="   1" pdb=" N   ILE A  51 "
            model="   1" pdb=" C   ILE A  51 "
            model="   1" pdb=" CB  ILE A  51 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.43    2.09    0.34 2.00e-01 2.50e+01 2.88e+00
  chirality model="   1" pdb=" CA  SER A  98 "
            model="   1" pdb=" N   SER A  98 "
            model="   1" pdb=" C   SER A  98 "
            model="   1" pdb=" CB  SER A  98 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.24    0.27 2.00e-01 2.50e+01 1.89e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  50 "   -0.120 2.00e-02 2.50e+03   8.57e-02 2.21e+02
        model="   1" pdb=" CG  TYR A  50 "    0.024 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  50 "   -0.007 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  50 "    0.071 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  50 "    0.027 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  50 "   -0.048 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  50 "   -0.013 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  50 "   -0.000 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  50 "   -0.050 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  50 "    0.186 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  50 "    0.077 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  50 "   -0.148 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  68 "   -0.111 2.00e-02 2.50e+03   5.27e-02 8.32e+01
        model="   1" pdb=" CG  TYR A  68 "   -0.014 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  68 "    0.018 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  68 "    0.024 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  68 "    0.020 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  68 "    0.012 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  68 "   -0.025 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  68 "   -0.102 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  68 "    0.038 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  68 "    0.058 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  68 "    0.052 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  68 "    0.030 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  91 "   -0.076 2.00e-02 2.50e+03   5.07e-02 7.72e+01
        model="   1" pdb=" CG  TYR A  91 "   -0.027 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  91 "    0.033 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  91 "   -0.005 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  91 "   -0.009 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  91 "    0.028 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  91 "   -0.016 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  91 "   -0.065 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  91 "    0.102 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  91 "   -0.012 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  91 "   -0.032 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  91 "    0.080 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.69 -     2.27: 208
        2.27 -     2.85: 4867
        2.85 -     3.43: 5206
        3.43 -     4.02: 6471
        4.02 -     4.60: 9571
  Nonbonded interactions: 26323
  Sorted by model distance:
  nonbonded model="   1" pdb=" OE2 GLU A  55 "
            model="   1" pdb="HH21 ARG A  58 "
     model   vdw
     1.688 1.850
  nonbonded model="   1" pdb=" HZ1 LYS A  10 "
            model="   1" pdb=" OD1 ASP A  23 "
     model   vdw
     1.715 1.850
  nonbonded model="   1" pdb=" OE2 GLU A 123 "
            model="   1" pdb=" HE  ARG A 127 "
     model   vdw
     1.719 1.850
  nonbonded model="   1" pdb=" OE1 GLU A  55 "
            model="   1" pdb=" HE  ARG A  58 "
     model   vdw
     1.749 1.850
  nonbonded model="   1" pdb=" OE1 GLU A  16 "
            model="   1" pdb=" HZ2 LYS A  19 "
     model   vdw
     1.788 1.850
  ... (remaining 26318 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 0.93
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 1.05 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.


  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 0.54
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 0.62 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 131
        1.23 -     1.43: 341
        1.43 -     1.63: 659
        1.63 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" N   PHE A  45 "
       model="   1" pdb=" CA  PHE A  45 "
    ideal  model  delta    sigma   weight residual
    1.458  1.389  0.069 1.90e-02 2.77e+03 1.33e+01
  bond model="   1" pdb=" CB  PHE A  45 "
       model="   1" pdb=" CG  PHE A  45 "
    ideal  model  delta    sigma   weight residual
    1.502  1.418  0.084 2.30e-02 1.89e+03 1.32e+01
  bond model="   1" pdb=" CE1 HIS A 135 "
       model="   1" pdb=" NE2 HIS A 135 "
    ideal  model  delta    sigma   weight residual
    1.321  1.356 -0.035 1.00e-02 1.00e+04 1.21e+01
  bond model="   1" pdb=" CD  ARG A 129 "
       model="   1" pdb=" NE  ARG A 129 "
    ideal  model  delta    sigma   weight residual
    1.458  1.506 -0.048 1.40e-02 5.10e+03 1.19e+01
  bond model="   1" pdb=" CE1 HIS A 139 "
       model="   1" pdb=" NE2 HIS A 139 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.19e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       94.94 -   102.34: 23
      102.34 -   109.75: 1964
      109.75 -   117.15: 1078
      117.15 -   124.55: 922
      124.55 -   131.96: 90
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" CA  PHE A  45 "
        model="   1" pdb=" CB  PHE A  45 "
        model="   1" pdb=" CG  PHE A  45 "
      ideal   model   delta    sigma   weight residual
     113.80  101.95   11.85 1.00e+00 1.00e+00 1.40e+02
  angle model="   1" pdb=" CA  ASP A 116 "
        model="   1" pdb=" C   ASP A 116 "
        model="   1" pdb=" N   PRO A 117 "
      ideal   model   delta    sigma   weight residual
     116.90  128.24  -11.34 1.50e+00 4.44e-01 5.72e+01
  angle model="   1" pdb=" N   PHE A  45 "
        model="   1" pdb=" CA  PHE A  45 "
        model="   1" pdb=" CB  PHE A  45 "
      ideal   model   delta    sigma   weight residual
     110.50   97.77   12.73 1.70e+00 3.46e-01 5.61e+01
  angle model="   1" pdb=" CA  LYS A 113 "
        model="   1" pdb=" C   LYS A 113 "
        model="   1" pdb=" N   PRO A 114 "
      ideal   model   delta    sigma   weight residual
     116.90  127.03  -10.13 1.50e+00 4.44e-01 4.56e+01
  angle model="   1" pdb=" C   PHE A  15 "
        model="   1" pdb=" CA  PHE A  15 "
        model="   1" pdb=" CB  PHE A  15 "
      ideal   model   delta    sigma   weight residual
     110.10   98.03   12.07 1.90e+00 2.77e-01 4.04e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    17.03: 967
       17.03 -    34.06: 56
       34.06 -    51.09: 5
       51.09 -    68.12: 3
       68.12 -    85.16: 1
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" N   VAL A  14 "
           model="   1" pdb=" C   VAL A  14 "
           model="   1" pdb=" CA  VAL A  14 "
           model="   1" pdb=" CB  VAL A  14 "
      ideal   model   delta  harmonic     sigma   weight residual
     123.40  139.17  -15.77     0      2.50e+00 1.60e-01 3.98e+01
  dihedral model="   1" pdb=" C   VAL A  14 "
           model="   1" pdb=" N   VAL A  14 "
           model="   1" pdb=" CA  VAL A  14 "
           model="   1" pdb=" CB  VAL A  14 "
      ideal   model   delta  harmonic     sigma   weight residual
    -122.00 -136.86   14.86     0      2.50e+00 1.60e-01 3.53e+01
  dihedral model="   1" pdb=" CD2 PHE A  15 "
           model="   1" pdb=" CG  PHE A  15 "
           model="   1" pdb=" CD1 PHE A  15 "
           model="   1" pdb=" HD1 PHE A  15 "
      ideal   model   delta  harmonic     sigma   weight residual
    -180.00 -151.56  -28.44     0      5.00e+00 4.00e-02 3.23e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.000 -    0.112: 134
       0.112 -    0.223: 26
       0.223 -    0.335: 11
       0.335 -    0.446: 4
       0.446 -    0.558: 1
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  VAL A  14 "
            model="   1" pdb=" N   VAL A  14 "
            model="   1" pdb=" C   VAL A  14 "
            model="   1" pdb=" CB  VAL A  14 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.44    1.88    0.56 2.00e-01 2.50e+01 7.77e+00
  chirality model="   1" pdb=" CG  LEU A  61 "
            model="   1" pdb=" CB  LEU A  61 "
            model="   1" pdb=" CD1 LEU A  61 "
            model="   1" pdb=" CD2 LEU A  61 "
    both_signs  ideal   model   delta    sigma   weight residual
      False     -2.59   -2.15   -0.44 2.00e-01 2.50e+01 4.80e+00
  chirality model="   1" pdb=" CA  ASP A  47 "
            model="   1" pdb=" N   ASP A  47 "
            model="   1" pdb=" C   ASP A  47 "
            model="   1" pdb=" CB  ASP A  47 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.13    0.38 2.00e-01 2.50e+01 3.67e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  PHE A  15 "    0.650 2.00e-02 2.50e+03   2.79e-01 2.33e+03
        model="   1" pdb=" CG  PHE A  15 "    0.084 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 PHE A  15 "   -0.158 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 PHE A  15 "   -0.143 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 PHE A  15 "   -0.012 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 PHE A  15 "   -0.038 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  PHE A  15 "    0.139 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 PHE A  15 "   -0.413 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 PHE A  15 "   -0.364 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 PHE A  15 "   -0.015 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 PHE A  15 "   -0.084 2.00e-02 2.50e+03
        model="   1" pdb=" HZ  PHE A  15 "    0.354 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  PHE A  45 "    0.372 2.00e-02 2.50e+03   1.69e-01 8.58e+02
        model="   1" pdb=" CG  PHE A  45 "    0.073 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 PHE A  45 "   -0.069 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 PHE A  45 "   -0.092 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 PHE A  45 "   -0.044 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 PHE A  45 "   -0.014 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  PHE A  45 "    0.090 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 PHE A  45 "   -0.178 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 PHE A  45 "   -0.251 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 PHE A  45 "   -0.115 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 PHE A  45 "   -0.030 2.00e-02 2.50e+03
        model="   1" pdb=" HZ  PHE A  45 "    0.259 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A 111 "    0.230 2.00e-02 2.50e+03   1.52e-01 6.95e+02
        model="   1" pdb=" CG  TYR A 111 "   -0.097 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A 111 "   -0.003 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A 111 "   -0.130 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A 111 "   -0.052 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A 111 "    0.076 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A 111 "   -0.036 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A 111 "    0.013 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A 111 "    0.092 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A 111 "   -0.291 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A 111 "   -0.096 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A 111 "    0.294 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.71 -     2.29: 350
        2.29 -     2.87: 5053
        2.87 -     3.44: 5254
        3.44 -     4.02: 6576
        4.02 -     4.60: 9958
  Nonbonded interactions: 27191
  Sorted by model distance:
  nonbonded model="   1" pdb="HD11 ILE A   4 "
            model="   1" pdb=" HA  ARG A  58 "
     model   vdw
     1.712 2.440
  nonbonded model="   1" pdb=" OE2 GLU A   8 "
            model="   1" pdb="HH11 ARG A  58 "
     model   vdw
     1.747 1.850
  nonbonded model="   1" pdb="HD12 ILE A   4 "
            model="   1" pdb="HD13 LEU A  61 "
     model   vdw
     1.765 2.440
  nonbonded model="   1" pdb=" OE2 GLU A  16 "
            model="   1" pdb=" HZ3 LYS A  19 "
     model   vdw
     1.830 1.850
  nonbonded model="   1" pdb=" H   PHE A  45 "
            model="   1" pdb=" HB2 PHE A  45 "
     model   vdw
     1.849 2.270
  ... (remaining 27186 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.
  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 135
        1.23 -     1.43: 335
        1.43 -     1.63: 661
        1.63 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" CE1 HIS A 135 "
       model="   1" pdb=" NE2 HIS A 135 "
    ideal  model  delta    sigma   weight residual
    1.321  1.357 -0.036 1.00e-02 1.00e+04 1.31e+01
  bond model="   1" pdb=" CE1 HIS A 136 "
       model="   1" pdb=" NE2 HIS A 136 "
    ideal  model  delta    sigma   weight residual
    1.321  1.357 -0.036 1.00e-02 1.00e+04 1.26e+01
  bond model="   1" pdb=" CE1 HIS A 139 "
       model="   1" pdb=" NE2 HIS A 139 "
    ideal  model  delta    sigma   weight residual
    1.321  1.356 -0.035 1.00e-02 1.00e+04 1.26e+01
  bond model="   1" pdb=" CD  ARG A 129 "
       model="   1" pdb=" NE  ARG A 129 "
    ideal  model  delta    sigma   weight residual
    1.458  1.506 -0.048 1.40e-02 5.10e+03 1.19e+01
  bond model="   1" pdb=" CD  ARG A 127 "
       model="   1" pdb=" NE  ARG A 127 "
    ideal  model  delta    sigma   weight residual
    1.458  1.506 -0.048 1.40e-02 5.10e+03 1.19e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       93.42 -   101.42: 14
      101.42 -   109.41: 1202
      109.41 -   117.41: 1869
      117.41 -   125.41: 946
      125.41 -   133.41: 46
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" N   SER A  46 "
        model="   1" pdb=" CA  SER A  46 "
        model="   1" pdb=" CB  SER A  46 "
      ideal   model   delta    sigma   weight residual
     110.50  122.12  -11.62 1.70e+00 3.46e-01 4.67e+01
  angle model="   1" pdb=" CA  ASP A 116 "
        model="   1" pdb=" CB  ASP A 116 "
        model="   1" pdb=" CG  ASP A 116 "
      ideal   model   delta    sigma   weight residual
     112.60  106.81    5.79 1.00e+00 1.00e+00 3.35e+01
  angle model="   1" pdb=" CB  LEU A   2 "
        model="   1" pdb=" CG  LEU A   2 "
        model="   1" pdb=" CD1 LEU A   2 "
      ideal   model   delta    sigma   weight residual
     110.70  126.39  -15.69 3.00e+00 1.11e-01 2.73e+01
  angle model="   1" pdb=" CB  LEU A   2 "
        model="   1" pdb=" CG  LEU A   2 "
        model="   1" pdb=" HG  LEU A   2 "
      ideal   model   delta    sigma   weight residual
     109.00   93.42   15.58 3.00e+00 1.11e-01 2.70e+01
  angle model="   1" pdb=" CA  ASP A  36 "
        model="   1" pdb=" CB  ASP A  36 "
        model="   1" pdb=" CG  ASP A  36 "
      ideal   model   delta    sigma   weight residual
     112.60  107.65    4.95 1.00e+00 1.00e+00 2.45e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    12.56: 955
       12.56 -    25.11: 58
       25.11 -    37.67: 11
       37.67 -    50.23: 3
       50.23 -    62.78: 5
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" C   VAL A  14 "
           model="   1" pdb=" N   VAL A  14 "
           model="   1" pdb=" CA  VAL A  14 "
           model="   1" pdb=" CB  VAL A  14 "
      ideal   model   delta  harmonic     sigma   weight residual
    -122.00 -137.85   15.85     0      2.50e+00 1.60e-01 4.02e+01
  dihedral model="   1" pdb=" N   SER A  46 "
           model="   1" pdb=" C   SER A  46 "
           model="   1" pdb=" CA  SER A  46 "
           model="   1" pdb=" CB  SER A  46 "
      ideal   model   delta  harmonic     sigma   weight residual
     122.80  135.25  -12.45     0      2.50e+00 1.60e-01 2.48e+01
  dihedral model="   1" pdb=" N   VAL A  14 "
           model="   1" pdb=" C   VAL A  14 "
           model="   1" pdb=" CA  VAL A  14 "
           model="   1" pdb=" CB  VAL A  14 "
      ideal   model   delta  harmonic     sigma   weight residual
     123.40  135.71  -12.31     0      2.50e+00 1.60e-01 2.42e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.001 -    0.091: 118
       0.091 -    0.181: 39
       0.181 -    0.271: 12
       0.271 -    0.361: 4
       0.361 -    0.451: 3
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CB  ILE A 131 "
            model="   1" pdb=" CA  ILE A 131 "
            model="   1" pdb=" CG1 ILE A 131 "
            model="   1" pdb=" CG2 ILE A 131 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.64    2.19    0.45 2.00e-01 2.50e+01 5.09e+00
  chirality model="   1" pdb=" CA  VAL A  14 "
            model="   1" pdb=" N   VAL A  14 "
            model="   1" pdb=" C   VAL A  14 "
            model="   1" pdb=" CB  VAL A  14 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.44    1.99    0.45 2.00e-01 2.50e+01 5.05e+00
  chirality model="   1" pdb=" CA  PRO A 102 "
            model="   1" pdb=" N   PRO A 102 "
            model="   1" pdb=" C   PRO A 102 "
            model="   1" pdb=" CB  PRO A 102 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.72    2.31    0.40 2.00e-01 2.50e+01 4.10e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  PHE A  67 "   -0.222 2.00e-02 2.50e+03   9.97e-02 2.98e+02
        model="   1" pdb=" CG  PHE A  67 "    0.002 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 PHE A  67 "    0.034 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 PHE A  67 "    0.069 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 PHE A  67 "    0.032 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 PHE A  67 "   -0.003 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  PHE A  67 "   -0.055 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 PHE A  67 "    0.056 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 PHE A  67 "    0.163 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 PHE A  67 "    0.089 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 PHE A  67 "   -0.017 2.00e-02 2.50e+03
        model="   1" pdb=" HZ  PHE A  67 "   -0.148 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A 111 "    0.006 2.00e-02 2.50e+03   7.56e-02 1.71e+02
        model="   1" pdb=" CG  TYR A 111 "    0.039 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A 111 "   -0.015 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A 111 "    0.036 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A 111 "   -0.012 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A 111 "   -0.063 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A 111 "   -0.014 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A 111 "    0.148 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A 111 "   -0.052 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A 111 "    0.099 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A 111 "   -0.009 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A 111 "   -0.163 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  PHE A  45 "    0.008 2.00e-02 2.50e+03   5.37e-02 8.65e+01
        model="   1" pdb=" CG  PHE A  45 "    0.068 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 PHE A  45 "    0.020 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 PHE A  45 "   -0.009 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 PHE A  45 "   -0.034 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 PHE A  45 "   -0.005 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  PHE A  45 "    0.031 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 PHE A  45 "    0.024 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 PHE A  45 "   -0.063 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 PHE A  45 "   -0.112 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 PHE A  45 "   -0.026 2.00e-02 2.50e+03
        model="   1" pdb=" HZ  PHE A  45 "    0.098 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.72 -     2.29: 331
        2.29 -     2.87: 4962
        2.87 -     3.45: 5101
        3.45 -     4.02: 6559
        4.02 -     4.60: 9688
  Nonbonded interactions: 26641
  Sorted by model distance:
  nonbonded model="   1" pdb=" HZ3 LYS A  63 "
            model="   1" pdb=" OD2 ASP A 103 "
     model   vdw
     1.716 1.850
  nonbonded model="   1" pdb=" OE2 GLU A  16 "
            model="   1" pdb=" HZ2 LYS A  19 "
     model   vdw
     1.719 1.850
  nonbonded model="   1" pdb="HG23 ILE A  30 "
            model="   1" pdb="HD21 LEU A  61 "
     model   vdw
     1.743 2.440
  nonbonded model="   1" pdb=" H   VAL A  18 "
            model="   1" pdb="HG22 VAL A  18 "
     model   vdw
     1.786 2.270
  nonbonded model="   1" pdb="HE21 GLN A  28 "
            model="   1" pdb=" OE2 GLU A  32 "
     model   vdw
     1.842 1.850
  ... (remaining 26636 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 0.79
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 0.88 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.


  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 0.94
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 1.08 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.


  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 0.83
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 0.91 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.


  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 0.92
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 1.05 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.


  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 1.00
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 1.12 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.


  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 0.98
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 1.11 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 101
        1.23 -     1.43: 366
        1.43 -     1.63: 664
        1.63 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" CD  ARG A  58 "
       model="   1" pdb=" NE  ARG A  58 "
    ideal  model  delta    sigma   weight residual
    1.458  1.511 -0.053 1.40e-02 5.10e+03 1.41e+01
  bond model="   1" pdb=" CE1 HIS A  43 "
       model="   1" pdb=" NE2 HIS A  43 "
    ideal  model  delta    sigma   weight residual
    1.321  1.358 -0.037 1.00e-02 1.00e+04 1.34e+01
  bond model="   1" pdb=" CE1 HIS A 134 "
       model="   1" pdb=" NE2 HIS A 134 "
    ideal  model  delta    sigma   weight residual
    1.321  1.357 -0.036 1.00e-02 1.00e+04 1.30e+01
  bond model="   1" pdb=" C   ILE A  51 "
       model="   1" pdb=" O   ILE A  51 "
    ideal  model  delta    sigma   weight residual
    1.231  1.303 -0.072 2.00e-02 2.50e+03 1.29e+01
  bond model="   1" pdb=" CE1 HIS A 137 "
       model="   1" pdb=" NE2 HIS A 137 "
    ideal  model  delta    sigma   weight residual
    1.321  1.357 -0.036 1.00e-02 1.00e+04 1.27e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       96.05 -   103.37: 28
      103.37 -   110.70: 2223
      110.70 -   118.03: 868
      118.03 -   125.35: 906
      125.35 -   132.68: 52
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" CA  ILE A  51 "
        model="   1" pdb=" C   ILE A  51 "
        model="   1" pdb=" N   PRO A  52 "
      ideal   model   delta    sigma   weight residual
     116.90  126.94  -10.04 1.50e+00 4.44e-01 4.48e+01
  angle model="   1" pdb=" CA  LYS A 113 "
        model="   1" pdb=" C   LYS A 113 "
        model="   1" pdb=" N   PRO A 114 "
      ideal   model   delta    sigma   weight residual
     116.90  124.52   -7.62 1.50e+00 4.44e-01 2.58e+01
  angle model="   1" pdb=" N   HIS A 139 "
        model="   1" pdb=" CA  HIS A 139 "
        model="   1" pdb=" CB  HIS A 139 "
      ideal   model   delta    sigma   weight residual
     110.50  118.57   -8.07 1.70e+00 3.46e-01 2.25e+01
  angle model="   1" pdb=" N   HIS A 138 "
        model="   1" pdb=" CA  HIS A 138 "
        model="   1" pdb=" HA  HIS A 138 "
      ideal   model   delta    sigma   weight residual
     110.00   96.05   13.95 3.00e+00 1.11e-01 2.16e+01
  angle model="   1" pdb=" ND1 HIS A 135 "
        model="   1" pdb=" CG  HIS A 135 "
        model="   1" pdb=" CD2 HIS A 135 "
      ideal   model   delta    sigma   weight residual
     106.10  110.65   -4.55 1.00e+00 1.00e+00 2.07e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    14.07: 965
       14.07 -    28.14: 45
       28.14 -    42.22: 13
       42.22 -    56.29: 6
       56.29 -    70.36: 3
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" CA  HIS A 138 "
           model="   1" pdb=" C   HIS A 138 "
           model="   1" pdb=" N   HIS A 139 "
           model="   1" pdb=" CA  HIS A 139 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  140.65   39.35     0      5.00e+00 4.00e-02 6.19e+01
  dihedral model="   1" pdb=" CA  HIS A 137 "
           model="   1" pdb=" C   HIS A 137 "
           model="   1" pdb=" N   HIS A 138 "
           model="   1" pdb=" CA  HIS A 138 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  151.37   28.63     0      5.00e+00 4.00e-02 3.28e+01
  dihedral model="   1" pdb=" N   HIS A 138 "
           model="   1" pdb=" C   HIS A 138 "
           model="   1" pdb=" CA  HIS A 138 "
           model="   1" pdb=" CB  HIS A 138 "
      ideal   model   delta  harmonic     sigma   weight residual
     122.80  136.39  -13.59     0      2.50e+00 1.60e-01 2.96e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.000 -    0.105: 126
       0.105 -    0.210: 35
       0.210 -    0.315: 13
       0.315 -    0.420: 1
       0.420 -    0.525: 1
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  HIS A 138 "
            model="   1" pdb=" N   HIS A 138 "
            model="   1" pdb=" C   HIS A 138 "
            model="   1" pdb=" CB  HIS A 138 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    1.99    0.52 2.00e-01 2.50e+01 6.88e+00
  chirality model="   1" pdb=" CA  TYR A  50 "
            model="   1" pdb=" N   TYR A  50 "
            model="   1" pdb=" C   TYR A  50 "
            model="   1" pdb=" CB  TYR A  50 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.14    0.37 2.00e-01 2.50e+01 3.45e+00
  chirality model="   1" pdb=" CA  LYS A  79 "
            model="   1" pdb=" N   LYS A  79 "
            model="   1" pdb=" C   LYS A  79 "
            model="   1" pdb=" CB  LYS A  79 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.22    0.29 2.00e-01 2.50e+01 2.10e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  50 "    0.369 2.00e-02 2.50e+03   1.63e-01 7.97e+02
        model="   1" pdb=" CG  TYR A  50 "    0.026 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  50 "   -0.062 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  50 "   -0.085 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  50 "   -0.055 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  50 "   -0.045 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  50 "    0.024 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  50 "    0.313 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  50 "   -0.125 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  50 "   -0.191 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  50 "   -0.104 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  50 "   -0.064 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A 105 "    0.119 2.00e-02 2.50e+03   4.86e-02 7.08e+01
        model="   1" pdb=" CG  TYR A 105 "   -0.001 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A 105 "   -0.022 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A 105 "   -0.032 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A 105 "   -0.010 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A 105 "    0.000 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A 105 "    0.029 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A 105 "    0.061 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A 105 "   -0.043 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A 105 "   -0.073 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A 105 "   -0.029 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A 105 "    0.001 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  68 "   -0.104 2.00e-02 2.50e+03   4.27e-02 5.48e+01
        model="   1" pdb=" CG  TYR A  68 "    0.011 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  68 "    0.019 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  68 "    0.026 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  68 "    0.013 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  68 "    0.006 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  68 "   -0.020 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  68 "   -0.071 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  68 "    0.029 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  68 "    0.049 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  68 "    0.031 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  68 "    0.011 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.83 -     2.38: 824
        2.38 -     2.94: 4937
        2.94 -     3.49: 5024
        3.49 -     4.05: 6291
        4.05 -     4.60: 9211
  Nonbonded interactions: 26287
  Sorted by model distance:
  nonbonded model="   1" pdb=" O   ASP A  47 "
            model="   1" pdb=" H   TYR A  50 "
     model   vdw
     1.829 1.850
  nonbonded model="   1" pdb=" H   LEU A   2 "
            model="   1" pdb=" HG  LEU A   2 "
     model   vdw
     1.875 2.270
  nonbonded model="   1" pdb=" HB3 SER A  13 "
            model="   1" pdb="HE22 GLN A  66 "
     model   vdw
     1.935 2.270
  nonbonded model="   1" pdb=" O   GLU A  55 "
            model="   1" pdb=" H   LEU A  59 "
     model   vdw
     1.940 1.850
  nonbonded model="   1" pdb=" H   THR A   5 "
            model="   1" pdb=" OE1 GLU A   8 "
     model   vdw
     1.941 1.850
  ... (remaining 26282 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.
  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 136
        1.23 -     1.43: 338
        1.43 -     1.63: 657
        1.63 -     1.83: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" CD  ARG A 129 "
       model="   1" pdb=" NE  ARG A 129 "
    ideal  model  delta    sigma   weight residual
    1.458  1.507 -0.049 1.40e-02 5.10e+03 1.20e+01
  bond model="   1" pdb=" CE1 HIS A 139 "
       model="   1" pdb=" NE2 HIS A 139 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.14e+01
  bond model="   1" pdb=" CE1 HIS A 137 "
       model="   1" pdb=" NE2 HIS A 137 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.14e+01
  bond model="   1" pdb=" CE1 HIS A 136 "
       model="   1" pdb=" NE2 HIS A 136 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.13e+01
  bond model="   1" pdb=" CE1 HIS A 134 "
       model="   1" pdb=" NE2 HIS A 134 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.13e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       90.68 -    98.83: 4
       98.83 -   106.99: 325
      106.99 -   115.14: 2620
      115.14 -   123.29: 917
      123.29 -   131.44: 211
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" N   PRO A 114 "
        model="   1" pdb=" CA  PRO A 114 "
        model="   1" pdb=" C   PRO A 114 "
      ideal   model   delta    sigma   weight residual
     112.10  131.44  -19.34 2.50e+00 1.60e-01 5.98e+01
  angle model="   1" pdb=" CA  ASP A  29 "
        model="   1" pdb=" CB  ASP A  29 "
        model="   1" pdb=" CG  ASP A  29 "
      ideal   model   delta    sigma   weight residual
     112.60  119.87   -7.27 1.00e+00 1.00e+00 5.29e+01
  angle model="   1" pdb=" CA  ASP A  36 "
        model="   1" pdb=" CB  ASP A  36 "
        model="   1" pdb=" CG  ASP A  36 "
      ideal   model   delta    sigma   weight residual
     112.60  105.79    6.81 1.00e+00 1.00e+00 4.63e+01
  angle model="   1" pdb=" C   PRO A 114 "
        model="   1" pdb=" CA  PRO A 114 "
        model="   1" pdb=" HA  PRO A 114 "
      ideal   model   delta    sigma   weight residual
     109.00   90.68   18.32 3.00e+00 1.11e-01 3.73e+01
  angle model="   1" pdb=" CB  PRO A 114 "
        model="   1" pdb=" CA  PRO A 114 "
        model="   1" pdb=" HA  PRO A 114 "
      ideal   model   delta    sigma   weight residual
     109.00  125.74  -16.74 3.00e+00 1.11e-01 3.11e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    14.28: 966
       14.28 -    28.56: 44
       28.56 -    42.83: 14
       42.83 -    57.11: 6
       57.11 -    71.39: 2
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" CA  VAL A 126 "
           model="   1" pdb=" C   VAL A 126 "
           model="   1" pdb=" N   ARG A 127 "
           model="   1" pdb=" CA  ARG A 127 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  132.66   47.34     0      5.00e+00 4.00e-02 8.97e+01
  dihedral model="   1" pdb=" C   ILE A  86 "
           model="   1" pdb=" N   ILE A  86 "
           model="   1" pdb=" CA  ILE A  86 "
           model="   1" pdb=" CB  ILE A  86 "
      ideal   model   delta  harmonic     sigma   weight residual
    -122.00 -139.49   17.49     0      2.50e+00 1.60e-01 4.89e+01
  dihedral model="   1" pdb=" N   PRO A 114 "
           model="   1" pdb=" C   PRO A 114 "
           model="   1" pdb=" CA  PRO A 114 "
           model="   1" pdb=" CB  PRO A 114 "
      ideal   model   delta  harmonic     sigma   weight residual
     115.10  131.40  -16.30     0      2.50e+00 1.60e-01 4.25e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.000 -    0.173: 155
       0.173 -    0.346: 15
       0.346 -    0.519: 4
       0.519 -    0.692: 1
       0.692 -    0.865: 1
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  PRO A 114 "
            model="   1" pdb=" N   PRO A 114 "
            model="   1" pdb=" C   PRO A 114 "
            model="   1" pdb=" CB  PRO A 114 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.72    1.85    0.86 2.00e-01 2.50e+01 1.87e+01
  chirality model="   1" pdb=" CA  ILE A  86 "
            model="   1" pdb=" N   ILE A  86 "
            model="   1" pdb=" C   ILE A  86 "
            model="   1" pdb=" CB  ILE A  86 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.43    1.87    0.56 2.00e-01 2.50e+01 7.97e+00
  chirality model="   1" pdb=" CA  VAL A 126 "
            model="   1" pdb=" N   VAL A 126 "
            model="   1" pdb=" C   VAL A 126 "
            model="   1" pdb=" CB  VAL A 126 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.44    1.97    0.48 2.00e-01 2.50e+01 5.66e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A 111 "   -0.177 2.00e-02 2.50e+03   8.78e-02 2.31e+02
        model="   1" pdb=" CG  TYR A 111 "   -0.030 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A 111 "    0.047 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A 111 "    0.018 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A 111 "    0.014 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A 111 "    0.041 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A 111 "   -0.034 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A 111 "   -0.165 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A 111 "    0.120 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A 111 "    0.035 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A 111 "    0.023 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A 111 "    0.107 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  68 "   -0.017 2.00e-02 2.50e+03   4.99e-02 7.46e+01
        model="   1" pdb=" CG  TYR A  68 "   -0.048 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  68 "   -0.007 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  68 "   -0.005 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  68 "    0.031 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  68 "    0.028 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  68 "    0.003 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  68 "   -0.123 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  68 "   -0.006 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  68 "    0.001 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  68 "    0.076 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  68 "    0.067 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  PHE A  15 "   -0.121 2.00e-02 2.50e+03   4.87e-02 7.12e+01
        model="   1" pdb=" CG  PHE A  15 "    0.011 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 PHE A  15 "    0.029 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 PHE A  15 "    0.034 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 PHE A  15 "   -0.002 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 PHE A  15 "   -0.006 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  PHE A  15 "   -0.013 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 PHE A  15 "    0.061 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 PHE A  15 "    0.078 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 PHE A  15 "   -0.016 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 PHE A  15 "   -0.029 2.00e-02 2.50e+03
        model="   1" pdb=" HZ  PHE A  15 "   -0.025 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.82 -     2.37: 757
        2.37 -     2.93: 5048
        2.93 -     3.49: 5005
        3.49 -     4.04: 6395
        4.04 -     4.60: 9437
  Nonbonded interactions: 26642
  Sorted by model distance:
  nonbonded model="   1" pdb=" HB2 HIS A  43 "
            model="   1" pdb=" HG3 LYS A 113 "
     model   vdw
     1.817 2.440
  nonbonded model="   1" pdb=" O   GLU A  55 "
            model="   1" pdb=" H   LEU A  59 "
     model   vdw
     1.869 1.850
  nonbonded model="   1" pdb="HG21 ILE A   4 "
            model="   1" pdb="HD21 LEU A  62 "
     model   vdw
     1.887 2.440
  nonbonded model="   1" pdb=" HB3 LYS A 113 "
            model="   1" pdb=" HD2 PRO A 114 "
     model   vdw
     1.902 2.440
  nonbonded model="   1" pdb=" HB3 LEU A   3 "
            model="   1" pdb="HD22 LEU A  61 "
     model   vdw
     1.913 2.440
  ... (remaining 26637 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.
  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 136
        1.23 -     1.43: 337
        1.43 -     1.63: 658
        1.63 -     1.83: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" CE1 HIS A 135 "
       model="   1" pdb=" NE2 HIS A 135 "
    ideal  model  delta    sigma   weight residual
    1.321  1.356 -0.035 1.00e-02 1.00e+04 1.24e+01
  bond model="   1" pdb=" CE1 HIS A 138 "
       model="   1" pdb=" NE2 HIS A 138 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.17e+01
  bond model="   1" pdb=" CE1 HIS A 136 "
       model="   1" pdb=" NE2 HIS A 136 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.16e+01
  bond model="   1" pdb=" CE1 HIS A 134 "
       model="   1" pdb=" NE2 HIS A 134 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.14e+01
  bond model="   1" pdb=" CE1 HIS A 139 "
       model="   1" pdb=" NE2 HIS A 139 "
    ideal  model  delta    sigma   weight residual
    1.321  1.354 -0.033 1.00e-02 1.00e+04 1.12e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       93.69 -   101.49: 9
      101.49 -   109.28: 1136
      109.28 -   117.08: 1911
      117.08 -   124.88: 948
      124.88 -   132.68: 73
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" CA  LYS A 101 "
        model="   1" pdb=" C   LYS A 101 "
        model="   1" pdb=" N   PRO A 102 "
      ideal   model   delta    sigma   weight residual
     116.90  127.72  -10.82 1.50e+00 4.44e-01 5.20e+01
  angle model="   1" pdb=" CB  GLU A 123 "
        model="   1" pdb=" CG  GLU A 123 "
        model="   1" pdb=" CD  GLU A 123 "
      ideal   model   delta    sigma   weight residual
     112.60  122.99  -10.39 1.70e+00 3.46e-01 3.74e+01
  angle model="   1" pdb=" C   GLU A 123 "
        model="   1" pdb=" CA  GLU A 123 "
        model="   1" pdb=" CB  GLU A 123 "
      ideal   model   delta    sigma   weight residual
     110.10  121.44  -11.34 1.90e+00 2.77e-01 3.56e+01
  angle model="   1" pdb=" CA  ILE A  51 "
        model="   1" pdb=" C   ILE A  51 "
        model="   1" pdb=" N   PRO A  52 "
      ideal   model   delta    sigma   weight residual
     116.90  124.81   -7.91 1.50e+00 4.44e-01 2.78e+01
  angle model="   1" pdb=" C   GLU A 123 "
        model="   1" pdb=" CA  GLU A 123 "
        model="   1" pdb=" HA  GLU A 123 "
      ideal   model   delta    sigma   weight residual
     109.00   93.69   15.31 3.00e+00 1.11e-01 2.61e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    15.26: 967
       15.26 -    30.52: 44
       30.52 -    45.78: 16
       45.78 -    61.04: 3
       61.04 -    76.30: 2
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" C   GLU A 123 "
           model="   1" pdb=" N   GLU A 123 "
           model="   1" pdb=" CA  GLU A 123 "
           model="   1" pdb=" CB  GLU A 123 "
      ideal   model   delta  harmonic     sigma   weight residual
    -122.60 -138.94   16.34     0      2.50e+00 1.60e-01 4.27e+01
  dihedral model="   1" pdb=" C   VAL A  14 "
           model="   1" pdb=" N   VAL A  14 "
           model="   1" pdb=" CA  VAL A  14 "
           model="   1" pdb=" CB  VAL A  14 "
      ideal   model   delta  harmonic     sigma   weight residual
    -122.00 -135.68   13.68     0      2.50e+00 1.60e-01 2.99e+01
  dihedral model="   1" pdb=" CA  GLU A 133 "
           model="   1" pdb=" C   GLU A 133 "
           model="   1" pdb=" N   HIS A 134 "
           model="   1" pdb=" CA  HIS A 134 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  153.85   26.15     0      5.00e+00 4.00e-02 2.74e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.000 -    0.126: 139
       0.126 -    0.251: 31
       0.251 -    0.377: 4
       0.377 -    0.502: 1
       0.502 -    0.628: 1
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  GLU A 123 "
            model="   1" pdb=" N   GLU A 123 "
            model="   1" pdb=" C   GLU A 123 "
            model="   1" pdb=" CB  GLU A 123 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    1.88    0.63 2.00e-01 2.50e+01 9.85e+00
  chirality model="   1" pdb=" CA  VAL A  14 "
            model="   1" pdb=" N   VAL A  14 "
            model="   1" pdb=" C   VAL A  14 "
            model="   1" pdb=" CB  VAL A  14 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.44    2.04    0.40 2.00e-01 2.50e+01 3.96e+00
  chirality model="   1" pdb=" CA  THR A  20 "
            model="   1" pdb=" N   THR A  20 "
            model="   1" pdb=" C   THR A  20 "
            model="   1" pdb=" CB  THR A  20 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.53    2.17    0.36 2.00e-01 2.50e+01 3.21e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  68 "    0.114 2.00e-02 2.50e+03   5.07e-02 7.71e+01
        model="   1" pdb=" CG  TYR A  68 "   -0.017 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  68 "   -0.014 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  68 "   -0.035 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  68 "   -0.024 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  68 "   -0.006 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  68 "    0.007 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  68 "    0.092 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  68 "   -0.006 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  68 "   -0.067 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  68 "   -0.050 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  68 "    0.005 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  12 "    0.051 2.00e-02 2.50e+03   4.78e-02 6.84e+01
        model="   1" pdb=" CG  TYR A  12 "    0.031 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  12 "   -0.032 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  12 "    0.006 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  12 "    0.030 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  12 "   -0.009 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  12 "    0.030 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  12 "   -0.015 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  12 "   -0.117 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  12 "    0.000 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  12 "    0.071 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  12 "   -0.045 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  PHE A  15 "    0.029 2.00e-02 2.50e+03   2.63e-02 2.08e+01
        model="   1" pdb=" CG  PHE A  15 "   -0.058 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 PHE A  15 "   -0.007 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 PHE A  15 "   -0.016 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 PHE A  15 "    0.004 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 PHE A  15 "    0.012 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  PHE A  15 "   -0.008 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 PHE A  15 "    0.020 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 PHE A  15 "   -0.006 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 PHE A  15 "    0.018 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 PHE A  15 "    0.044 2.00e-02 2.50e+03
        model="   1" pdb=" HZ  PHE A  15 "   -0.030 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.72 -     2.30: 338
        2.30 -     2.87: 498  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 114
        1.23 -     1.43: 355
        1.43 -     1.63: 662
        1.63 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" CE1 HIS A 134 "
       model="   1" pdb=" NE2 HIS A 134 "
    ideal  model  delta    sigma   weight residual
    1.321  1.361 -0.040 1.00e-02 1.00e+04 1.63e+01
  bond model="   1" pdb=" CE1 HIS A 135 "
       model="   1" pdb=" NE2 HIS A 135 "
    ideal  model  delta    sigma   weight residual
    1.321  1.361 -0.040 1.00e-02 1.00e+04 1.59e+01
  bond model="   1" pdb=" CE1 HIS A 139 "
       model="   1" pdb=" NE2 HIS A 139 "
    ideal  model  delta    sigma   weight residual
    1.321  1.361 -0.040 1.00e-02 1.00e+04 1.59e+01
  bond model="   1" pdb=" CE1 HIS A 138 "
       model="   1" pdb=" NE2 HIS A 138 "
    ideal  model  delta    sigma   weight residual
    1.321  1.360 -0.039 1.00e-02 1.00e+04 1.56e+01
  bond model="   1" pdb=" CE1 HIS A  43 "
       model="   1" pdb=" NE2 HIS A  43 "
    ideal  model  delta    sigma   weight residual
    1.321  1.360 -0.039 1.00e-02 1.00e+04 1.50e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       96.27 -   104.27: 38
      104.27 -   112.28: 2566
      112.28 -   120.29: 860
      120.29 -   128.29: 603
      128.29 -   136.30: 10
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" C   HIS A 137 "
        model="   1" pdb=" N   HIS A 138 "
        model="   1" pdb=" CA  HIS A 138 "
      ideal   model   delta    sigma   weight residual
     121.70  136.30  -14.60 1.80e+00 3.09e-01 6.58e+01
  angle model="   1" pdb=" C   HIS A 135 "
        model="   1" pdb=" N   HIS A 136 "
        model="   1" pdb=" CA  HIS A 136 "
      ideal   model   delta    sigma   weight residual
     121.70  135.27  -13.57 1.80e+00 3.09e-01 5.68e+01
  angle model="   1" pdb=" O   HIS A 135 "
        model="   1" pdb=" C   HIS A 135 "
        model="   1" pdb=" N   HIS A 136 "
      ideal   model   delta    sigma   weight residual
     123.00  112.71   10.29 1.60e+00 3.91e-01 4.14e+01
  angle model="   1" pdb=" N   HIS A 137 "
        model="   1" pdb=" CA  HIS A 137 "
        model="   1" pdb=" CB  HIS A 137 "
      ideal   model   delta    sigma   weight residual
     110.50  120.32   -9.82 1.70e+00 3.46e-01 3.34e+01
  angle model="   1" pdb=" CA  HIS A 135 "
        model="   1" pdb=" C   HIS A 135 "
        model="   1" pdb=" N   HIS A 136 "
      ideal   model   delta    sigma   weight residual
     116.20  127.16  -10.96 2.00e+00 2.50e-01 3.00e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    14.82: 969
       14.82 -    29.63: 45
       29.63 -    44.45: 14
       44.45 -    59.27: 3
       59.27 -    74.09: 1
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" N   HIS A 137 "
           model="   1" pdb=" C   HIS A 137 "
           model="   1" pdb=" CA  HIS A 137 "
           model="   1" pdb=" CB  HIS A 137 "
      ideal   model   delta  harmonic     sigma   weight residual
     122.80  142.40  -19.60     0      2.50e+00 1.60e-01 6.14e+01
  dihedral model="   1" pdb=" CA  HIS A 138 "
           model="   1" pdb=" C   HIS A 138 "
           model="   1" pdb=" N   HIS A 139 "
           model="   1" pdb=" CA  HIS A 139 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  144.07   35.93     0      5.00e+00 4.00e-02 5.16e+01
  dihedral model="   1" pdb=" C   HIS A 137 "
           model="   1" pdb=" N   HIS A 137 "
           model="   1" pdb=" CA  HIS A 137 "
           model="   1" pdb=" CB  HIS A 137 "
      ideal   model   delta  harmonic     sigma   weight residual
    -122.60 -139.60   17.00     0      2.50e+00 1.60e-01 4.62e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.001 -    0.142: 159
       0.142 -    0.283: 15
       0.283 -    0.424: 1
       0.424 -    0.566: 0
      7
        2.87 -     3.45: 5094
        3.45 -     4.02: 6652
        4.02 -     4.60: 9688
  Nonbonded interactions: 26759
  Sorted by model distance:
  nonbonded model="   1" pdb=" OE2 GLU A  55 "
            model="   1" pdb="HH21 ARG A  58 "
     model   vdw
     1.722 1.850
  nonbonded model="   1" pdb=" OE1 GLU A  55 "
            model="   1" pdb=" HE  ARG A  58 "
     model   vdw
     1.761 1.850
  nonbonded model="   1" pdb=" OD2 ASP A  36 "
            model="   1" pdb=" HH  TYR A  68 "
     model   vdw
     1.781 1.850
  nonbonded model="   1" pdb="HG23 VAL A  41 "
            model="   1" pdb=" H   HIS A  43 "
     model   vdw
     1.808 2.270
  nonbonded model="   1" pdb=" OE1 GLU A  75 "
            model="   1" pdb=" HG1 THR A  83 "
     model   vdw
     1.831 1.850
  ... (remaining 26754 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.
 0.566 -    0.707: 1
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  HIS A 137 "
            model="   1" pdb=" N   HIS A 137 "
            model="   1" pdb=" C   HIS A 137 "
            model="   1" pdb=" CB  HIS A 137 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    1.80    0.71 2.00e-01 2.50e+01 1.25e+01
  chirality model="   1" pdb=" CA  THR A  20 "
            model="   1" pdb=" N   THR A  20 "
            model="   1" pdb=" C   THR A  20 "
            model="   1" pdb=" CB  THR A  20 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.53    2.22    0.31 2.00e-01 2.50e+01 2.42e+00
  chirality model="   1" pdb=" CA  LEU A   3 "
            model="   1" pdb=" N   LEU A   3 "
            model="   1" pdb=" C   LEU A   3 "
            model="   1" pdb=" CB  LEU A   3 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.79   -0.28 2.00e-01 2.50e+01 1.96e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  HIS A 136 "    0.152 2.00e-02 2.50e+03   8.91e-02 1.59e+02
        model="   1" pdb=" CG  HIS A 136 "   -0.135 2.00e-02 2.50e+03
        model="   1" pdb=" ND1 HIS A 136 "   -0.112 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 HIS A 136 "   -0.028 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 HIS A 136 "    0.015 2.00e-02 2.50e+03
        model="   1" pdb=" NE2 HIS A 136 "    0.067 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 HIS A 136 "   -0.021 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 HIS A 136 "    0.063 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  89 "   -0.111 2.00e-02 2.50e+03   5.37e-02 8.65e+01
        model="   1" pdb=" CG  TYR A  89 "   -0.022 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  89 "    0.034 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  89 "    0.011 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  89 "   -0.002 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  89 "    0.020 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  89 "   -0.028 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  89 "   -0.075 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  89 "    0.098 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  89 "    0.026 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  89 "   -0.009 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  89 "    0.058 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  HIS A 138 "   -0.108 2.00e-02 2.50e+03   6.35e-02 8.06e+01
        model="   1" pdb=" CG  HIS A 138 "    0.098 2.00e-02 2.50e+03
        model="   1" pdb=" ND1 HIS A 138 "    0.079 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 HIS A 138 "    0.020 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 HIS A 138 "   -0.010 2.00e-02 2.50e+03
        model="   1" pdb=" NE2 HIS A 138 "   -0.048 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 HIS A 138 "    0.013 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 HIS A 138 "   -0.044 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.71 -     2.29: 280
        2.29 -     2.87: 4991
        2.87 -     3.44: 4914
        3.44 -     4.02: 6245
        4.02 -     4.60: 9561
  Nonbonded interactions: 25991
  Sorted by model distance:
  nonbonded model="   1" pdb=" OE2 GLU A  55 "
            model="   1" pdb="HH21 ARG A  58 "
     model   vdw
     1.709 1.850
  nonbonded model="   1" pdb=" HZ1 LYS A  10 "
            model="   1" pdb=" OD1 ASP A  23 "
     model   vdw
     1.725 1.850
  nonbonded model="   1" pdb="HG23 VAL A  41 "
            model="   1" pdb=" H   HIS A  43 "
     model   vdw
     1.762 2.270
  nonbonded model="   1" pdb=" OE1 GLU A  55 "
            model="   1" pdb=" HE  ARG A  58 "
     model   vdw
     1.768 1.850
  nonbonded model="   1" pdb=" H   ALA A 115 "
            model="   1" pdb=" H   ASP A 116 "
     model   vdw
     1.847 2.100
  ... (remaining 25986 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.
  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 129
        1.23 -     1.43: 338
        1.43 -     1.63: 664
        1.63 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" CE1 HIS A 134 "
       model="   1" pdb=" NE2 HIS A 134 "
    ideal  model  delta    sigma   weight residual
    1.321  1.357 -0.036 1.00e-02 1.00e+04 1.27e+01
  bond model="   1" pdb=" CE1 HIS A 136 "
       model="   1" pdb=" NE2 HIS A 136 "
    ideal  model  delta    sigma   weight residual
    1.321  1.356 -0.035 1.00e-02 1.00e+04 1.25e+01
  bond model="   1" pdb=" CD  ARG A  21 "
       model="   1" pdb=" NE  ARG A  21 "
    ideal  model  delta    sigma   weight residual
    1.458  1.506 -0.048 1.40e-02 5.10e+03 1.17e+01
  bond model="   1" pdb=" CE1 HIS A 135 "
       model="   1" pdb=" NE2 HIS A 135 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.17e+01
  bond model="   1" pdb=" CE1 HIS A 137 "
       model="   1" pdb=" NE2 HIS A 137 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.15e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       95.37 -   102.74: 18
      102.74 -   110.12: 2134
      110.12 -   117.49: 930
      117.49 -   124.87: 923
      124.87 -   132.24: 72
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" CA  ILE A  51 "
        model="   1" pdb=" C   ILE A  51 "
        model="   1" pdb=" N   PRO A  52 "
      ideal   model   delta    sigma   weight residual
     116.90  126.79   -9.89 1.50e+00 4.44e-01 4.35e+01
  angle model="   1" pdb=" O   ILE A  51 "
        model="   1" pdb=" C   ILE A  51 "
        model="   1" pdb=" N   PRO A  52 "
      ideal   model   delta    sigma   weight residual
     123.00  114.10    8.90 1.60e+00 3.91e-01 3.10e+01
  angle model="   1" pdb=" CA  ASP A 118 "
        model="   1" pdb=" CB  ASP A 118 "
        model="   1" pdb=" CG  ASP A 118 "
      ideal   model   delta    sigma   weight residual
     112.60  117.37   -4.77 1.00e+00 1.00e+00 2.28e+01
  angle model="   1" pdb=" N   PRO A  52 "
        model="   1" pdb=" CD  PRO A  52 "
        model="   1" pdb=" CG  PRO A  52 "
      ideal   model   delta    sigma   weight residual
     103.20  110.18   -6.98 1.50e+00 4.44e-01 2.17e+01
  angle model="   1" pdb=" ND1 HIS A 134 "
        model="   1" pdb=" CG  HIS A 134 "
        model="   1" pdb=" CD2 HIS A 134 "
      ideal   model   delta    sigma   weight residual
     106.10  110.68   -4.58 1.00e+00 1.00e+00 2.09e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    14.32: 973
       14.32 -    28.64: 43
       28.64 -    42.96: 11
       42.96 -    57.28: 4
       57.28 -    71.60: 1
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" CA  ASP A 118 "
           model="   1" pdb=" C   ASP A 118 "
           model="   1" pdb=" N   LEU A 119 "
           model="   1" pdb=" CA  LEU A 119 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  138.32   41.68     0      5.00e+00 4.00e-02 6.95e+01
  dihedral model="   1" pdb=" C   ILE A  51 "
           model="   1" pdb=" N   ILE A  51 "
           model="   1" pdb=" CA  ILE A  51 "
           model="   1" pdb=" CB  ILE A  51 "
      ideal   model   delta  harmonic     sigma   weight residual
    -122.00 -142.27   20.27     0      2.50e+00 1.60e-01 6.57e+01
  dihedral model="   1" pdb=" CA  ASP A 116 "
           model="   1" pdb=" C   ASP A 116 "
           model="   1" pdb=" N   PRO A 117 "
           model="   1" pdb=" CA  PRO A 117 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  144.99   35.01     0      5.00e+00 4.00e-02 4.90e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.000 -    0.120: 150
       0.120 -    0.239: 17
       0.239 -    0.359: 4
       0.359 -    0.478: 2
       0.478 -    0.597: 3
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  PHE A  15 "
            model="   1" pdb=" N   PHE A  15 "
            model="   1" pdb=" C   PHE A  15 "
            model="   1" pdb=" CB  PHE A  15 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    1.91    0.60 2.00e-01 2.50e+01 8.92e+00
  chirality model="   1" pdb=" CA  ILE A  51 "
            model="   1" pdb=" N   ILE A  51 "
            model="   1" pdb=" C   ILE A  51 "
            model="   1" pdb=" CB  ILE A  51 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.43    1.86    0.57 2.00e-01 2.50e+01 8.15e+00
  chirality model="   1" pdb=" CA  GLU A  75 "
            model="   1" pdb=" N   GLU A  75 "
            model="   1" pdb=" C   GLU A  75 "
            model="   1" pdb=" CB  GLU A  75 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    1.99    0.52 2.00e-01 2.50e+01 6.78e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  12 "    0.037 2.00e-02 2.50e+03   3.38e-02 3.42e+01
        model="   1" pdb=" CG  TYR A  12 "    0.014 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  12 "    0.009 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  12 "   -0.023 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  12 "   -0.018 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  12 "    0.013 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  12 "    0.016 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  12 "    0.025 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  12 "    0.023 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  12 "   -0.071 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  12 "   -0.059 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  12 "    0.034 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  89 "    0.059 2.00e-02 2.50e+03   2.41e-02 1.74e+01
        model="   1" pdb=" CG  TYR A  89 "   -0.005 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  89 "   -0.018 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  89 "   -0.011 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  89 "    0.004 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  89 "   -0.003 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  89 "    0.002 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  89 "    0.017 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  89 "   -0.042 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  89 "   -0.021 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  89 "    0.020 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  89 "   -0.001 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  PHE A  45 "    0.047 2.00e-02 2.50e+03   2.35e-02 1.65e+01
        model="   1" pdb=" CG  PHE A  45 "   -0.004 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 PHE A  45 "   -0.013 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 PHE A  45 "   -0.007 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 PHE A  45 "   -0.004 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 PHE A  45 "   -0.010 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  PHE A  45 "    0.016 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 PHE A  45 "   -0.025 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 PHE A  45 "   -0.008 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 PHE A  45 "   -0.011 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 PHE A  45 "   -0.028 2.00e-02 2.50e+03
        model="   1" pdb=" HZ  PHE A  45 "    0.047 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.62 -     2.22: 136
        2.22 -     2.81: 4440
        2.81 -     3.41: 5390
        3.41 -     4.00: 6417
        4.00 -     4.60: 9834
  Nonbonded interactions: 26217
  Sorted by model distance:
  nonbonded model="   1" pdb=" OE2 GLU A  16 "
            model="   1" pdb=" HZ2 LYS A  19 "
     model   vdw
     1.619 1.850
  nonbonded model="   1" pdb=" HZ1 LYS A  10 "
            model="   1" pdb=" OD1 ASP A  23 "
     model   vdw
     1.686 1.850
  nonbonded model="   1" pdb=" OE2 GLU A  55 "
            model="   1" pdb="HH21 ARG A  58 "
     model   vdw
     1.710 1.850
  nonbonded model="   1" pdb=" OE1 GLU A  55 "
            model="   1" pdb=" HE  ARG A  58 "
     model   vdw
     1.777 1.850
  nonbonded model="   1" pdb="HD12 ILE A   4 "
            model="   1" pdb="HD23 LEU A  62 "
     model   vdw
     1.839 2.440
  ... (remaining 26212 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.
  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 136
        1.23 -     1.43: 337
        1.43 -     1.63: 658
        1.63 -     1.83: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" CE1 HIS A 135 "
       model="   1" pdb=" NE2 HIS A 135 "
    ideal  model  delta    sigma   weight residual
    1.321  1.356 -0.035 1.00e-02 1.00e+04 1.24e+01
  bond model="   1" pdb=" CE1 HIS A 138 "
       model="   1" pdb=" NE2 HIS A 138 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.17e+01
  bond model="   1" pdb=" CE1 HIS A 136 "
       model="   1" pdb=" NE2 HIS A 136 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.16e+01
  bond model="   1" pdb=" CE1 HIS A 134 "
       model="   1" pdb=" NE2 HIS A 134 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.14e+01
  bond model="   1" pdb=" CE1 HIS A 139 "
       model="   1" pdb=" NE2 HIS A 139 "
    ideal  model  delta    sigma   weight residual
    1.321  1.354 -0.033 1.00e-02 1.00e+04 1.12e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       93.69 -   101.49: 9
      101.49 -   109.28: 1136
      109.28 -   117.08: 1911
      117.08 -   124.88: 948
      124.88 -   132.68: 73
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" CA  LYS A 101 "
        model="   1" pdb=" C   LYS A 101 "
        model="   1" pdb=" N   PRO A 102 "
      ideal   model   delta    sigma   weight residual
     116.90  127.72  -10.82 1.50e+00 4.44e-01 5.20e+01
  angle model="   1" pdb=" CB  GLU A 123 "
        model="   1" pdb=" CG  GLU A 123 "
        model="   1" pdb=" CD  GLU A 123 "
      ideal   model   delta    sigma   weight residual
     112.60  122.99  -10.39 1.70e+00 3.46e-01 3.74e+01
  angle model="   1" pdb=" C   GLU A 123 "
        model="   1" pdb=" CA  GLU A 123 "
        model="   1" pdb=" CB  GLU A 123 "
      ideal   model   delta    sigma   weight residual
     110.10  121.44  -11.34 1.90e+00 2.77e-01 3.56e+01
  angle model="   1" pdb=" CA  ILE A  51 "
        model="   1" pdb=" C   ILE A  51 "
        model="   1" pdb=" N   PRO A  52 "
      ideal   model   delta    sigma   weight residual
     116.90  124.81   -7.91 1.50e+00 4.44e-01 2.78e+01
  angle model="   1" pdb=" C   GLU A 123 "
        model="   1" pdb=" CA  GLU A 123 "
        model="   1" pdb=" HA  GLU A 123 "
      ideal   model   delta    sigma   weight residual
     109.00   93.69   15.31 3.00e+00 1.11e-01 2.61e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    15.26: 967
       15.26 -    30.52: 44
       30.52 -    45.78: 16
       45.78 -    61.04: 3
       61.04 -    76.30: 2
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" C   GLU A 123 "
           model="   1" pdb=" N   GLU A 123 "
           model="   1" pdb=" CA  GLU A 123 "
           model="   1" pdb=" CB  GLU A 123 "
      ideal   model   delta  harmonic     sigma   weight residual
    -122.60 -138.94   16.34     0      2.50e+00 1.60e-01 4.27e+01
  dihedral model="   1" pdb=" C   VAL A  14 "
           model="   1" pdb=" N   VAL A  14 "
           model="   1" pdb=" CA  VAL A  14 "
           model="   1" pdb=" CB  VAL A  14 "
      ideal   model   delta  harmonic     sigma   weight residual
    -122.00 -135.68   13.68     0      2.50e+00 1.60e-01 2.99e+01
  dihedral model="   1" pdb=" CA  GLU A 133 "
           model="   1" pdb=" C   GLU A 133 "
           model="   1" pdb=" N   HIS A 134 "
           model="   1" pdb=" CA  HIS A 134 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  153.85   26.15     0      5.00e+00 4.00e-02 2.74e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.000 -    0.126: 139
       0.126 -    0.251: 31
       0.251 -    0.377: 4
       0.377 -    0.502: 1
       0.502 -    0.628: 1
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  GLU A 123 "
            model="   1" pdb=" N   GLU A 123 "
            model="   1" pdb=" C   GLU A 123 "
            model="   1" pdb=" CB  GLU A 123 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    1.88    0.63 2.00e-01 2.50e+01 9.85e+00
  chirality model="   1" pdb=" CA  VAL A  14 "
            model="   1" pdb=" N   VAL A  14 "
            model="   1" pdb=" C   VAL A  14 "
            model="   1" pdb=" CB  VAL A  14 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.44    2.04    0.40 2.00e-01 2.50e+01 3.96e+00
  chirality model="   1" pdb=" CA  THR A  20 "
            model="   1" pdb=" N   THR A  20 "
            model="   1" pdb=" C   THR A  20 "
            model="   1" pdb=" CB  THR A  20 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.53    2.17    0.36 2.00e-01 2.50e+01 3.21e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  68 "    0.114 2.00e-02 2.50e+03   5.07e-02 7.71e+01
        model="   1" pdb=" CG  TYR A  68 "   -0.017 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  68 "   -0.014 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  68 "   -0.035 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  68 "   -0.024 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  68 "   -0.006 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  68 "    0.007 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  68 "    0.092 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  68 "   -0.006 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  68 "   -0.067 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  68 "   -0.050 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  68 "    0.005 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  12 "    0.051 2.00e-02 2.50e+03   4.78e-02 6.84e+01
        model="   1" pdb=" CG  TYR A  12 "    0.031 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  12 "   -0.032 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  12 "    0.006 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  12 "    0.030 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  12 "   -0.009 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  12 "    0.030 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  12 "   -0.015 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  12 "   -0.117 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  12 "    0.000 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  12 "    0.071 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  12 "   -0.045 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  PHE A  15 "    0.029 2.00e-02 2.50e+03   2.63e-02 2.08e+01
        model="   1" pdb=" CG  PHE A  15 "   -0.058 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 PHE A  15 "   -0.007 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 PHE A  15 "   -0.016 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 PHE A  15 "    0.004 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 PHE A  15 "    0.012 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  PHE A  15 "   -0.008 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 PHE A  15 "    0.020 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 PHE A  15 "   -0.006 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 PHE A  15 "    0.018 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 PHE A  15 "    0.044 2.00e-02 2.50e+03
        model="   1" pdb=" HZ  PHE A  15 "   -0.030 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.72 -     2.30: 338
        2.30 -     2.87: 4987
        2.87 -     3.45: 5094
        3.45 -     4.02: 6652
        4.02 -     4.60: 9688
  Nonbonded interactions: 26759
  Sorted by model distance:
  nonbonded model="   1" pdb=" OE2 GLU A  55 "
            model="   1" pdb="HH21 ARG A  58 "
     model   vdw
     1.722 1.850
  nonbonded model="   1" pdb=" OE1 GLU A  55 "
            model="   1" pdb=" HE  ARG A  58 "
     model   vdw
     1.761 1.850
  nonbonded model="   1" pdb=" OD2 ASP A  36 "
            model="   1" pdb=" HH  TYR A  68 "
     model   vdw
     1.781 1.850
  nonbonded model="   1" pdb="HG23 VAL A  41 "
            model="   1" pdb=" H   HIS A  43 "
     model   vdw
     1.808 2.270
  nonbonded model="   1" pdb=" OE1 GLU A  75 "
            model="   1" pdb=" HG1 THR A  83 "
     model   vdw
     1.831 1.850
  ... (remaining 26754 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 0.99
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 1.12 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.


  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 0.96
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 1.09 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 91
        1.23 -     1.43: 377
        1.43 -     1.63: 663
        1.63 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" CA  ASN A  72 "
       model="   1" pdb=" CB  ASN A  72 "
    ideal  model  delta    sigma   weight residual
    1.530  1.602 -0.072 2.00e-02 2.50e+03 1.30e+01
  bond model="   1" pdb=" CD  ARG A  58 "
       model="   1" pdb=" NE  ARG A  58 "
    ideal  model  delta    sigma   weight residual
    1.458  1.504 -0.046 1.40e-02 5.10e+03 1.10e+01
  bond model="   1" pdb=" CE1 HIS A 134 "
       model="   1" pdb=" NE2 HIS A 134 "
    ideal  model  delta    sigma   weight residual
    1.321  1.353 -0.032 1.00e-02 1.00e+04 1.00e+01
  bond model="   1" pdb=" CE1 HIS A 136 "
       model="   1" pdb=" NE2 HIS A 136 "
    ideal  model  delta    sigma   weight residual
    1.321  1.352 -0.031 1.00e-02 1.00e+04 9.77e+00
  bond model="   1" pdb=" CE1 HIS A 137 "
       model="   1" pdb=" NE2 HIS A 137 "
    ideal  model  delta    sigma   weight residual
    1.321  1.352 -0.031 1.00e-02 1.00e+04 9.64e+00
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       95.47 -   103.12: 35
      103.12 -   110.76: 2249
      110.76 -   118.41: 874
      118.41 -   126.06: 877
      126.06 -   133.71: 42
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" CA  ASN A  72 "
        model="   1" pdb=" CB  ASN A  72 "
        model="   1" pdb=" CG  ASN A  72 "
      ideal   model   delta    sigma   weight residual
     112.60  120.82   -8.22 1.00e+00 1.00e+00 6.76e+01
  angle model="   1" pdb=" CA  ASP A 116 "
        model="   1" pdb=" C   ASP A 116 "
        model="   1" pdb=" N   PRO A 117 "
      ideal   model   delta    sigma   weight residual
     116.90  127.28  -10.38 1.50e+00 4.44e-01 4.79e+01
  angle model="   1" pdb=" C   GLY A  73 "
        model="   1" pdb=" N   ASP A  74 "
        model="   1" pdb=" CA  ASP A  74 "
      ideal   model   delta    sigma   weight residual
     121.70  133.71  -12.01 1.80e+00 3.09e-01 4.45e+01
  angle model="   1" pdb=" CB  GLU A  32 "
        model="   1" pdb=" CG  GLU A  32 "
        model="   1" pdb=" CD  GLU A  32 "
      ideal   model   delta    sigma   weight residual
     112.60  123.36  -10.76 1.70e+00 3.46e-01 4.01e+01
  angle model="   1" pdb=" CA  ILE A  51 "
        model="   1" pdb=" C   ILE A  51 "
        model="   1" pdb=" N   PRO A  52 "
      ideal   model   delta    sigma   weight residual
     116.90  126.26   -9.36 1.50e+00 4.44e-01 3.89e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    16.30: 972
       16.30 -    32.59: 45
       32.59 -    48.89: 9
       48.89 -    65.19: 3
       65.19 -    81.48: 3
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" C   ASP A  88 "
           model="   1" pdb=" N   ASP A  88 "
           model="   1" pdb=" CA  ASP A  88 "
           model="   1" pdb=" CB  ASP A  88 "
      ideal   model   delta  harmonic     sigma   weight residual
    -122.60 -146.18   23.58     0      2.50e+00 1.60e-01 8.90e+01
  dihedral model="   1" pdb=" N   ASP A  88 "
           model="   1" pdb=" C   ASP A  88 "
           model="   1" pdb=" CA  ASP A  88 "
           model="   1" pdb=" CB  ASP A  88 "
      ideal   model   delta  harmonic     sigma   weight residual
     122.80  145.61  -22.81     0      2.50e+00 1.60e-01 8.33e+01
  dihedral model="   1" pdb=" C   ASP A  74 "
           model="   1" pdb=" N   ASP A  74 "
           model="   1" pdb=" CA  ASP A  74 "
           model="   1" pdb=" CB  ASP A  74 "
      ideal   model   delta  harmonic     sigma   weight residual
    -122.60 -139.37   16.77     0      2.50e+00 1.60e-01 4.50e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.000 -    0.203: 159
       0.203 -    0.405: 12
       0.405 -    0.607: 4
       0.607 -    0.810: 0
       0.810 -    1.012: 1
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  ASP A  88 "
            model="   1" pdb=" N   ASP A  88 "
            model="   1" pdb=" C   ASP A  88 "
            model="   1" pdb=" CB  ASP A  88 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    1.50    1.01 2.00e-01 2.50e+01 2.56e+01
  chirality model="   1" pdb=" CA  ASP A  74 "
            model="   1" pdb=" N   ASP A  74 "
            model="   1" pdb=" C   ASP A  74 "
            model="   1" pdb=" CB  ASP A  74 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    1.90    0.61 2.00e-01 2.50e+01 9.17e+00
  chirality model="   1" pdb=" CA  PRO A  54 "
            model="   1" pdb=" N   PRO A  54 "
            model="   1" pdb=" C   PRO A  54 "
            model="   1" pdb=" CB  PRO A  54 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.72    2.25    0.47 2.00e-01 2.50e+01 5.45e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  68 "   -0.039 2.00e-02 2.50e+03   1.03e-01 3.20e+02
        model="   1" pdb=" CG  TYR A  68 "   -0.038 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  68 "    0.061 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  68 "   -0.033 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  68 "   -0.081 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  68 "    0.010 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  68 "   -0.112 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  68 "    0.101 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  68 "    0.220 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  68 "   -0.059 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  68 "   -0.153 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  68 "    0.123 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  PHE A  45 "    0.152 2.00e-02 2.50e+03   9.05e-02 2.46e+02
        model="   1" pdb=" CG  PHE A  45 "    0.033 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 PHE A  45 "   -0.057 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 PHE A  45 "   -0.006 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 PHE A  45 "    0.009 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 PHE A  45 "   -0.045 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  PHE A  45 "    0.050 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 PHE A  45 "   -0.162 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 PHE A  45 "   -0.005 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 PHE A  45 "    0.025 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 PHE A  45 "   -0.136 2.00e-02 2.50e+03
        model="   1" pdb=" HZ  PHE A  45 "    0.143 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A 111 "    0.057 2.00e-02 2.50e+03   6.14e-02 1.13e+02
        model="   1" pdb=" CG  TYR A 111 "   -0.021 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A 111 "    0.015 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A 111 "   -0.030 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A 111 "   -0.051 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A 111 "   -0.007 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A 111 "   -0.029 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A 111 "    0.122 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A 111 "    0.082 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A 111 "   -0.053 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A 111 "   -0.109 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A 111 "    0.024 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.66 -     2.25: 220
        2.25 -     2.83: 4704
        2.83 -     3.42: 5673
        3.42 -     4.01: 7051
        4.01 -     4.60: 10417
  Nonbonded interactions: 28065
  Sorted by model distance:
  nonbonded model="   1" pdb="HG22 ILE A   4 "
            model="   1" pdb="HD23 LEU A  61 "
     model   vdw
     1.658 2.440
  nonbonded model="   1" pdb=" OD1 ASP A   7 "
            model="   1" pdb=" HZ3 LYS A  10 "
     model   vdw
     1.692 1.850
  nonbonded model="   1" pdb="HD22 LEU A  93 "
            model="   1" pdb="HD11 LEU A  99 "
     model   vdw
     1.737 2.440
  nonbonded model="   1" pdb="HG23 VAL A  41 "
            model="   1" pdb=" H   HIS A  43 "
     model   vdw
     1.765 2.270
  nonbonded model="   1" pdb=" HZ1 LYS A  85 "
            model="   1" pdb=" OD1 ASP A  88 "
     model   vdw
     1.766 1.850
  ... (remaining 28060 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.
  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 131
        1.23 -     1.43: 336
        1.43 -     1.63: 664
        1.63 -     1.83: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" CE1 HIS A 137 "
       model="   1" pdb=" NE2 HIS A 137 "
    ideal  model  delta    sigma   weight residual
    1.321  1.357 -0.036 1.00e-02 1.00e+04 1.27e+01
  bond model="   1" pdb=" CE1 HIS A 134 "
       model="   1" pdb=" NE2 HIS A 134 "
    ideal  model  delta    sigma   weight residual
    1.321  1.356 -0.035 1.00e-02 1.00e+04 1.25e+01
  bond model="   1" pdb=" CE1 HIS A 135 "
       model="   1" pdb=" NE2 HIS A 135 "
    ideal  model  delta    sigma   weight residual
    1.321  1.356 -0.035 1.00e-02 1.00e+04 1.25e+01
  bond model="   1" pdb=" CE1 HIS A  43 "
       model="   1" pdb=" NE2 HIS A  43 "
    ideal  model  delta    sigma   weight residual
    1.321  1.356 -0.035 1.00e-02 1.00e+04 1.24e+01
  bond model="   1" pdb=" CE1 HIS A 139 "
       model="   1" pdb=" NE2 HIS A 139 "
    ideal  model  delta    sigma   weight residual
    1.321  1.356 -0.035 1.00e-02 1.00e+04 1.21e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       96.07 -   103.23: 30
      103.23 -   110.40: 2154
      110.40 -   117.56: 900
      117.56 -   124.72: 914
      124.72 -   131.88: 79
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" CA  ASP A  29 "
        model="   1" pdb=" CB  ASP A  29 "
        model="   1" pdb=" CG  ASP A  29 "
      ideal   model   delta    sigma   weight residual
     112.60  120.37   -7.77 1.00e+00 1.00e+00 6.04e+01
  angle model="   1" pdb=" CA  PHE A  45 "
        model="   1" pdb=" CB  PHE A  45 "
        model="   1" pdb=" CG  PHE A  45 "
      ideal   model   delta    sigma   weight residual
     113.80  107.68    6.12 1.00e+00 1.00e+00 3.75e+01
  angle model="   1" pdb=" CA  ASP A 116 "
        model="   1" pdb=" C   ASP A 116 "
        model="   1" pdb=" N   PRO A 117 "
      ideal   model   delta    sigma   weight residual
     116.90  125.64   -8.74 1.50e+00 4.44e-01 3.40e+01
  angle model="   1" pdb=" CA  LYS A 113 "
        model="   1" pdb=" C   LYS A 113 "
        model="   1" pdb=" N   PRO A 114 "
      ideal   model   delta    sigma   weight residual
     116.90  124.90   -8.00 1.50e+00 4.44e-01 2.84e+01
  angle model="   1" pdb=" ND1 HIS A  43 "
        model="   1" pdb=" CG  HIS A  43 "
        model="   1" pdb=" CD2 HIS A  43 "
      ideal   model   delta    sigma   weight residual
     106.10  110.85   -4.75 1.00e+00 1.00e+00 2.25e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    13.12: 962
       13.12 -    26.24: 48
       26.24 -    39.36: 15
       39.36 -    52.47: 5
       52.47 -    65.59: 2
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" CA  HIS A 138 "
           model="   1" pdb=" C   HIS A 138 "
           model="   1" pdb=" N   HIS A 139 "
           model="   1" pdb=" CA  HIS A 139 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  151.97   28.03     0      5.00e+00 4.00e-02 3.14e+01
  dihedral model="   1" pdb=" C   VAL A  14 "
           model="   1" pdb=" N   VAL A  14 "
           model="   1" pdb=" CA  VAL A  14 "
           model="   1" pdb=" CB  VAL A  14 "
      ideal   model   delta  harmonic     sigma   weight residual
    -122.00 -135.88   13.88     0      2.50e+00 1.60e-01 3.08e+01
  dihedral model="   1" pdb=" N   VAL A  14 "
           model="   1" pdb=" C   VAL A  14 "
           model="   1" pdb=" CA  VAL A  14 "
           model="   1" pdb=" CB  VAL A  14 "
      ideal   model   delta  harmonic     sigma   weight residual
     123.40  136.07  -12.67     0      2.50e+00 1.60e-01 2.57e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.000 -    0.081: 113
       0.081 -    0.162: 41
       0.162 -    0.243: 15
       0.243 -    0.324: 5
       0.324 -    0.405: 2
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  VAL A  14 "
            model="   1" pdb=" N   VAL A  14 "
            model="   1" pdb=" C   VAL A  14 "
            model="   1" pdb=" CB  VAL A  14 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.44    2.04    0.41 2.00e-01 2.50e+01 4.10e+00
  chirality model="   1" pdb=" CA  ASP A  95 "
            model="   1" pdb=" N   ASP A  95 "
            model="   1" pdb=" C   ASP A  95 "
            model="   1" pdb=" CB  ASP A  95 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.13    0.38 2.00e-01 2.50e+01 3.68e+00
  chirality model="   1" pdb=" CG  LEU A   3 "
            model="   1" pdb=" CB  LEU A   3 "
            model="   1" pdb=" CD1 LEU A   3 "
            model="   1" pdb=" CD2 LEU A   3 "
    both_signs  ideal   model   delta    sigma   weight residual
      False     -2.59   -2.88    0.29 2.00e-01 2.50e+01 2.06e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  PHE A  45 "    0.167 2.00e-02 2.50e+03   8.08e-02 1.96e+02
        model="   1" pdb=" CG  PHE A  45 "    0.026 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 PHE A  45 "   -0.051 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 PHE A  45 "   -0.022 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 PHE A  45 "    0.000 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 PHE A  45 "   -0.028 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  PHE A  45 "    0.046 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 PHE A  45 "   -0.137 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 PHE A  45 "   -0.051 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 PHE A  45 "    0.004 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 PHE A  45 "   -0.081 2.00e-02 2.50e+03
        model="   1" pdb=" HZ  PHE A  45 "    0.126 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  HIS A  43 "    0.102 2.00e-02 2.50e+03   6.02e-02 7.25e+01
        model="   1" pdb=" CG  HIS A  43 "   -0.089 2.00e-02 2.50e+03
        model="   1" pdb=" ND1 HIS A  43 "   -0.077 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 HIS A  43 "   -0.019 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 HIS A  43 "    0.009 2.00e-02 2.50e+03
        model="   1" pdb=" NE2 HIS A  43 "    0.047 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 HIS A  43 "   -0.016 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 HIS A  43 "    0.041 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  68 "   -0.087 2.00e-02 2.50e+03   3.97e-02 4.73e+01
        model="   1" pdb=" CG  TYR A  68 "    0.002 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  68 "    0.015 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  68 "    0.019 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  68 "    0.016 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  68 "    0.012 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  68 "   -0.010 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  68 "   -0.082 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  68 "    0.023 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  68 "    0.036 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  68 "    0.035 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  68 "    0.021 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.64 -     2.23: 155
        2.23 -     2.82: 4504
        2.82 -     3.41: 5513
        3.41 -     4.01: 6539
        4.01 -     4.60: 10068
  Nonbonded interactions: 26779
  Sorted by model distance:
  nonbonded model="   1" pdb=" OE1 GLU A  16 "
            model="   1" pdb=" HZ3 LYS A  19 "
     model   vdw
     1.637 1.850
  nonbonded model="   1" pdb=" OE1 GLU A  75 "
            model="   1" pdb=" HZ2 LYS A  79 "
     model   vdw
     1.654 1.850
  nonbonded model="   1" pdb=" HZ3 LYS A  63 "
            model="   1" pdb=" OD1 ASP A 103 "
     model   vdw
     1.740 1.850
  nonbonded model="   1" pdb=" HZ1 LYS A  10 "
            model="   1" pdb=" OD1 ASP A  23 "
     model   vdw
     1.774 1.850
  nonbonded model="   1" pdb="HG23 VAL A  41 "
            model="   1" pdb=" H   HIS A  43 "
     model   vdw
     1.814 2.270
  ... (remaining 26774 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 0.98
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 1.10 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 126
        1.23 -     1.43: 339
        1.43 -     1.63: 666
        1.63 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" CD  ARG A 129 "
       model="   1" pdb=" NE  ARG A 129 "
    ideal  model  delta    sigma   weight residual
    1.458  1.510 -0.052 1.40e-02 5.10e+03 1.36e+01
  bond model="   1" pdb=" CD  ARG A 127 "
       model="   1" pdb=" NE  ARG A 127 "
    ideal  model  delta    sigma   weight residual
    1.458  1.508 -0.050 1.40e-02 5.10e+03 1.26e+01
  bond model="   1" pdb=" CE1 HIS A  43 "
       model="   1" pdb=" NE2 HIS A  43 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.15e+01
  bond model="   1" pdb=" CE1 HIS A 136 "
       model="   1" pdb=" NE2 HIS A 136 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.14e+01
  bond model="   1" pdb=" CE1 HIS A 139 "
       model="   1" pdb=" NE2 HIS A 139 "
    ideal  model  delta    sigma   weight residual
    1.321  1.354 -0.033 1.00e-02 1.00e+04 1.11e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       93.46 -   101.20: 7
      101.20 -   108.93: 955
      108.93 -   116.66: 2070
      116.66 -   124.39: 950
      124.39 -   132.12: 95
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" CA  ASP A 116 "
        model="   1" pdb=" CB  ASP A 116 "
        model="   1" pdb=" CG  ASP A 116 "
      ideal   model   delta    sigma   weight residual
     112.60  120.96   -8.36 1.00e+00 1.00e+00 6.98e+01
  angle model="   1" pdb=" N   PRO A 114 "
        model="   1" pdb=" CA  PRO A 114 "
        model="   1" pdb=" C   PRO A 114 "
      ideal   model   delta    sigma   weight residual
     112.10  127.78  -15.68 2.50e+00 1.60e-01 3.93e+01
  angle model="   1" pdb=" C   GLY A  87 "
        model="   1" pdb=" N   ASP A  88 "
        model="   1" pdb=" CA  ASP A  88 "
      ideal   model   delta    sigma   weight residual
     121.70  132.12  -10.42 1.80e+00 3.09e-01 3.35e+01
  angle model="   1" pdb=" CB  PRO A 114 "
        model="   1" pdb=" CA  PRO A 114 "
        model="   1" pdb=" HA  PRO A 114 "
      ideal   model   delta    sigma   weight residual
     109.00  125.93  -16.93 3.00e+00 1.11e-01 3.19e+01
  angle model="   1" pdb=" CA  ASP A 116 "
        model="   1" pdb=" C   ASP A 116 "
        model="   1" pdb=" N   PRO A 117 "
      ideal   model   delta    sigma   weight residual
     116.90  124.57   -7.67 1.50e+00 4.44e-01 2.61e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    14.40: 970
       14.40 -    28.81: 41
       28.81 -    43.21: 12
       43.21 -    57.61: 7
       57.61 -    72.02: 2
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" CA  ASP A 116 "
           model="   1" pdb=" C   ASP A 116 "
           model="   1" pdb=" N   PRO A 117 "
           model="   1" pdb=" CA  PRO A 117 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  149.38   30.62     0      5.00e+00 4.00e-02 3.75e+01
  dihedral model="   1" pdb=" CA  LYS A 113 "
           model="   1" pdb=" C   LYS A 113 "
           model="   1" pdb=" N   PRO A 114 "
           model="   1" pdb=" CA  PRO A 114 "
      ideal   model   delta  harmonic     sigma   weight residual
    -180.00 -149.97  -30.03     0      5.00e+00 4.00e-02 3.61e+01
  dihedral model="   1" pdb=" CA  HIS A 135 "
           model="   1" pdb=" C   HIS A 135 "
           model="   1" pdb=" N   HIS A 136 "
           model="   1" pdb=" CA  HIS A 136 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  153.63   26.37     0      5.00e+00 4.00e-02 2.78e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.000 -    0.087: 111
       0.087 -    0.174: 47
       0.174 -    0.261: 13
       0.261 -    0.348: 2
       0.348 -    0.435: 3
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  MET A 128 "
            model="   1" pdb=" N   MET A 128 "
            model="   1" pdb=" C   MET A 128 "
            model="   1" pdb=" CB  MET A 128 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.08    0.43 2.00e-01 2.50e+01 4.73e+00
  chirality model="   1" pdb=" CA  PRO A 114 "
            model="   1" pdb=" N   PRO A 114 "
            model="   1" pdb=" C   PRO A 114 "
            model="   1" pdb=" CB  PRO A 114 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.72    2.29    0.43 2.00e-01 2.50e+01 4.66e+00
  chirality model="   1" pdb=" CA  HIS A 135 "
            model="   1" pdb=" N   HIS A 135 "
            model="   1" pdb=" C   HIS A 135 "
            model="   1" pdb=" CB  HIS A 135 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.13    0.38 2.00e-01 2.50e+01 3.61e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  68 "    0.108 2.00e-02 2.50e+03   4.28e-02 5.49e+01
        model="   1" pdb=" CG  TYR A  68 "   -0.031 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  68 "   -0.029 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  68 "   -0.021 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  68 "   -0.008 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  68 "   -0.015 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  68 "   -0.008 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  68 "    0.074 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  68 "   -0.040 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  68 "   -0.018 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  68 "    0.004 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  68 "   -0.016 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  81 "   -0.062 2.00e-02 2.50e+03   4.14e-02 5.15e+01
        model="   1" pdb=" CG  TYR A  81 "   -0.014 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  81 "   -0.004 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  81 "    0.030 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  81 "    0.018 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  81 "   -0.016 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  81 "   -0.022 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  81 "   -0.029 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  81 "   -0.011 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  81 "    0.091 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  81 "    0.060 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  81 "   -0.042 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A 105 "    0.076 2.00e-02 2.50e+03   3.40e-02 3.48e+01
        model="   1" pdb=" CG  TYR A 105 "   -0.022 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A 105 "   -0.030 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A 105 "   -0.011 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A 105 "    0.013 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A 105 "   -0.006 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A 105 "    0.016 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A 105 "    0.009 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A 105 "   -0.064 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A 105 "   -0.006 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A 105 "    0.040 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A 105 "   -0.017 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.73 -     2.30: 357
        2.30 -     2.88: 5045
        2.88 -     3.45: 5192
        3.45 -     4.03: 6829
        4.03 -     4.60: 10145
  Nonbonded interactions: 27568
  Sorted by model distance:
  nonbonded model="   1" pdb=" OE2 GLU A  55 "
            model="   1" pdb="HH21 ARG A  58 "
     model   vdw
     1.726 1.850
  nonbonded model="   1" pdb=" OE1 GLU A  55 "
            model="   1" pdb=" HE  ARG A  58 "
     model   vdw
     1.786 1.850
  nonbonded model="   1" pdb=" OE2 GLU A  16 "
            model="   1" pdb=" HZ2 LYS A  19 "
     model   vdw
     1.792 1.850
  nonbonded model="   1" pdb=" OD2 ASP A  36 "
            model="   1" pdb=" HH  TYR A  68 "
     model   vdw
     1.827 1.850
  nonbonded model="   1" pdb=" OE1 GLU A 120 "
            model="   1" pdb=" H   GLU A 120 "
     model   vdw
     1.835 1.850
  ... (remaining 27563 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 0.95
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 1.08 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 126
        1.23 -     1.43: 339
        1.43 -     1.63: 666
        1.63 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" CD  ARG A 129 "
       model="   1" pdb=" NE  ARG A 129 "
    ideal  model  delta    sigma   weight residual
    1.458  1.510 -0.052 1.40e-02 5.10e+03 1.36e+01
  bond model="   1" pdb=" CD  ARG A 127 "
       model="   1" pdb=" NE  ARG A 127 "
    ideal  model  delta    sigma   weight residual
    1.458  1.508 -0.050 1.40e-02 5.10e+03 1.26e+01
  bond model="   1" pdb=" CE1 HIS A  43 "
       model="   1" pdb=" NE2 HIS A  43 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.15e+01
  bond model="   1" pdb=" CE1 HIS A 136 "
       model="   1" pdb=" NE2 HIS A 136 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.14e+01
  bond model="   1" pdb=" CE1 HIS A 139 "
       model="   1" pdb=" NE2 HIS A 139 "
    ideal  model  delta    sigma   weight residual
    1.321  1.354 -0.033 1.00e-02 1.00e+04 1.11e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       93.46 -   101.20: 7
      101.20 -   108.93: 955
      108.93 -   116.66: 2070
      116.66 -   124.39: 950
      124.39 -   132.12: 95
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" CA  ASP A 116 "
        model="   1" pdb=" CB  ASP A 116 "
        model="   1" pdb=" CG  ASP A 116 "
      ideal   model   delta    sigma   weight residual
     112.60  120.96   -8.36 1.00e+00 1.00e+00 6.98e+01
  angle model="   1" pdb=" N   PRO A 114 "
        model="   1" pdb=" CA  PRO A 114 "
        model="   1" pdb=" C   PRO A 114 "
      ideal   model   delta    sigma   weight residual
     112.10  127.78  -15.68 2.50e+00 1.60e-01 3.93e+01
  angle model="   1" pdb=" C   GLY A  87 "
        model="   1" pdb=" N   ASP A  88 "
        model="   1" pdb=" CA  ASP A  88 "
      ideal   model   delta    sigma   weight residual
     121.70  132.12  -10.42 1.80e+00 3.09e-01 3.35e+01
  angle model="   1" pdb=" CB  PRO A 114 "
        model="   1" pdb=" CA  PRO A 114 "
        model="   1" pdb=" HA  PRO A 114 "
      ideal   model   delta    sigma   weight residual
     109.00  125.93  -16.93 3.00e+00 1.11e-01 3.19e+01
  angle model="   1" pdb=" CA  ASP A 116 "
        model="   1" pdb=" C   ASP A 116 "
        model="   1" pdb=" N   PRO A 117 "
      ideal   model   delta    sigma   weight residual
     116.90  124.57   -7.67 1.50e+00 4.44e-01 2.61e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    14.40: 970
       14.40 -    28.81: 41
       28.81 -    43.21: 12
       43.21 -    57.61: 7
       57.61 -    72.02: 2
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" CA  ASP A 116 "
           model="   1" pdb=" C   ASP A 116 "
           model="   1" pdb=" N   PRO A 117 "
           model="   1" pdb=" CA  PRO A 117 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  149.38   30.62     0      5.00e+00 4.00e-02 3.75e+01
  dihedral model="   1" pdb=" CA  LYS A 113 "
           model="   1" pdb=" C   LYS A 113 "
           model="   1" pdb=" N   PRO A 114 "
           model="   1" pdb=" CA  PRO A 114 "
      ideal   model   delta  harmonic     sigma   weight residual
    -180.00 -149.97  -30.03     0      5.00e+00 4.00e-02 3.61e+01
  dihedral model="   1" pdb=" CA  HIS A 135 "
           model="   1" pdb=" C   HIS A 135 "
           model="   1" pdb=" N   HIS A 136 "
           model="   1" pdb=" CA  HIS A 136 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  153.63   26.37     0      5.00e+00 4.00e-02 2.78e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.000 -    0.087: 111
       0.087 -    0.174: 47
       0.174 -    0.261: 13
       0.261 -    0.348: 2
       0.348 -    0.435: 3
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  MET A 128 "
            model="   1" pdb=" N   MET A 128 "
            model="   1" pdb=" C   MET A 128 "
            model="   1" pdb=" CB  MET A 128 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.08    0.43 2.00e-01 2.50e+01 4.73e+00
  chirality model="   1" pdb=" CA  PRO A 114 "
            model="   1" pdb=" N   PRO A 114 "
            model="   1" pdb=" C   PRO A 114 "
            model="   1" pdb=" CB  PRO A 114 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.72    2.29    0.43 2.00e-01 2.50e+01 4.66e+00
  chirality model="   1" pdb=" CA  HIS A 135 "
            model="   1" pdb=" N   HIS A 135 "
            model="   1" pdb=" C   HIS A 135 "
            model="   1" pdb=" CB  HIS A 135 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.13    0.38 2.00e-01 2.50e+01 3.61e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  68 "    0.108 2.00e-02 2.50e+03   4.28e-02 5.49e+01
        model="   1" pdb=" CG  TYR A  68 "   -0.031 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  68 "   -0.029 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  68 "   -0.021 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  68 "   -0.008 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  68 "   -0.015 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  68 "   -0.008 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  68 "    0.074 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  68 "   -0.040 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  68 "   -0.018 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  68 "    0.004 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  68 "   -0.016 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  81 "   -0.062 2.00e-02 2.50e+03   4.14e-02 5.15e+01
        model="   1" pdb=" CG  TYR A  81 "   -0.014 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  81 "   -0.004 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  81 "    0.030 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  81 "    0.018 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  81 "   -0.016 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  81 "   -0.022 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  81 "   -0.029 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  81 "   -0.011 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  81 "    0.091 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  81 "    0.060 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  81 "   -0.042 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A 105 "    0.076 2.00e-02 2.50e+03   3.40e-02 3.48e+01
        model="   1" pdb=" CG  TYR A 105 "   -0.022 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A 105 "   -0.030 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A 105 "   -0.011 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A 105 "    0.013 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A 105 "   -0.006 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A 105 "    0.016 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A 105 "    0.009 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A 105 "   -0.064 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A 105 "   -0.006 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A 105 "    0.040 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A 105 "   -0.017 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.73 -     2.30: 357
        2.30 -     2.88: 5045
        2.88 -     3.45: 5192
        3.45 -     4.03: 6829
        4.03 -     4.60: 10145
  Nonbonded interactions: 27568
  Sorted by model distance:
  nonbonded model="   1" pdb=" OE2 GLU A  55 "
            model="   1" pdb="HH21 ARG A  58 "
     model   vdw
     1.726 1.850
  nonbonded model="   1" pdb=" OE1 GLU A  55 "
            model="   1" pdb=" HE  ARG A  58 "
     model   vdw
     1.786 1.850
  nonbonded model="   1" pdb=" OE2 GLU A  16 "
            model="   1" pdb=" HZ2 LYS A  19 "
     model   vdw
     1.792 1.850
  nonbonded model="   1" pdb=" OD2 ASP A  36 "
            model="   1" pdb=" HH  TYR A  68 "
     model   vdw
     1.827 1.850
  nonbonded model="   1" pdb=" OE1 GLU A 120 "
            model="   1" pdb=" H   GLU A 120 "
     model   vdw
     1.835 1.850
  ... (remaining 27563 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 0.93
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 1.05 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 65
        1.23 -     1.43: 404
        1.43 -     1.63: 662
        1.63 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" CE1 HIS A  43 "
       model="   1" pdb=" NE2 HIS A  43 "
    ideal  model  delta    sigma   weight residual
    1.321  1.357 -0.036 1.00e-02 1.00e+04 1.28e+01
  bond model="   1" pdb=" CD  ARG A 129 "
       model="   1" pdb=" NE  ARG A 129 "
    ideal  model  delta    sigma   weight residual
    1.458  1.508 -0.050 1.40e-02 5.10e+03 1.28e+01
  bond model="   1" pdb=" CE1 HIS A 139 "
       model="   1" pdb=" NE2 HIS A 139 "
    ideal  model  delta    sigma   weight residual
    1.321  1.353 -0.032 1.00e-02 1.00e+04 1.05e+01
  bond model="   1" pdb=" NE  ARG A  21 "
       model="   1" pdb=" CZ  ARG A  21 "
    ideal  model  delta    sigma   weight residual
    1.326  1.361 -0.035 1.10e-02 8.26e+03 1.04e+01
  bond model="   1" pdb=" CE1 HIS A 135 "
       model="   1" pdb=" NE2 HIS A 135 "
    ideal  model  delta    sigma   weight residual
    1.321  1.353 -0.032 1.00e-02 1.00e+04 1.03e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       96.89 -   103.89: 41
      103.89 -   110.89: 2242
      110.89 -   117.89: 825
      117.89 -   124.89: 891
      124.89 -   131.88: 78
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" CA  HIS A  43 "
        model="   1" pdb=" CB  HIS A  43 "
        model="   1" pdb=" CG  HIS A  43 "
      ideal   model   delta    sigma   weight residual
     113.80  121.64   -7.84 1.00e+00 1.00e+00 6.15e+01
  angle model="   1" pdb=" C   GLY A  96 "
        model="   1" pdb=" N   SER A  97 "
        model="   1" pdb=" CA  SER A  97 "
      ideal   model   delta    sigma   weight residual
     121.70  131.88  -10.18 1.80e+00 3.09e-01 3.20e+01
  angle model="   1" pdb=" CA  LYS A 113 "
        model="   1" pdb=" C   LYS A 113 "
        model="   1" pdb=" N   PRO A 114 "
      ideal   model   delta    sigma   weight residual
     116.90  125.16   -8.26 1.50e+00 4.44e-01 3.03e+01
  angle model="   1" pdb=" CD1 LEU A  61 "
        model="   1" pdb=" CG  LEU A  61 "
        model="   1" pdb=" CD2 LEU A  61 "
      ideal   model   delta    sigma   weight residual
     110.80   98.85   11.95 2.20e+00 2.07e-01 2.95e+01
  angle model="   1" pdb=" CA  ASP A 116 "
        model="   1" pdb=" C   ASP A 116 "
        model="   1" pdb=" N   PRO A 117 "
      ideal   model   delta    sigma   weight residual
     116.90  124.45   -7.55 1.50e+00 4.44e-01 2.53e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    12.44: 943
       12.44 -    24.89: 65
       24.89 -    37.33: 11
       37.33 -    49.77: 8
       49.77 -    62.22: 5
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" CA  PRO A 117 "
           model="   1" pdb=" C   PRO A 117 "
           model="   1" pdb=" N   ASP A 118 "
           model="   1" pdb=" CA  ASP A 118 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  125.99   54.01     0      5.00e+00 4.00e-02 1.17e+02
  dihedral model="   1" pdb=" CA  LEU A 119 "
           model="   1" pdb=" C   LEU A 119 "
           model="   1" pdb=" N   GLU A 120 "
           model="   1" pdb=" CA  GLU A 120 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  160.17   19.83     0      5.00e+00 4.00e-02 1.57e+01
  dihedral model="   1" pdb=" N   GLU A  75 "
           model="   1" pdb=" C   GLU A  75 "
           model="   1" pdb=" CA  GLU A  75 "
           model="   1" pdb=" CB  GLU A  75 "
      ideal   model   delta  harmonic     sigma   weight residual
     122.80  132.67   -9.87     0      2.50e+00 1.60e-01 1.56e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.000 -    0.066: 89
       0.066 -    0.132: 58
       0.132 -    0.197: 19
       0.197 -    0.263: 6
       0.263 -    0.329: 4
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  GLU A  75 "
            model="   1" pdb=" N   GLU A  75 "
            model="   1" pdb=" C   GLU A  75 "
            model="   1" pdb=" CB  GLU A  75 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.18    0.33 2.00e-01 2.50e+01 2.70e+00
  chirality model="   1" pdb=" CG  LEU A   3 "
            model="   1" pdb=" CB  LEU A   3 "
            model="   1" pdb=" CD1 LEU A   3 "
            model="   1" pdb=" CD2 LEU A   3 "
    both_signs  ideal   model   delta    sigma   weight residual
      False     -2.59   -2.88    0.29 2.00e-01 2.50e+01 2.08e+00
  chirality model="   1" pdb=" CG  LEU A  61 "
            model="   1" pdb=" CB  LEU A  61 "
            model="   1" pdb=" CD1 LEU A  61 "
            model="   1" pdb=" CD2 LEU A  61 "
    both_signs  ideal   model   delta    sigma   weight residual
      False     -2.59   -2.87    0.28 2.00e-01 2.50e+01 1.96e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A 111 "   -0.127 2.00e-02 2.50e+03   9.88e-02 2.93e+02
        model="   1" pdb=" CG  TYR A 111 "    0.095 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A 111 "    0.019 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A 111 "    0.074 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A 111 "   -0.013 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A 111 "   -0.064 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A 111 "    0.013 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A 111 "    0.118 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A 111 "   -0.009 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A 111 "    0.152 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A 111 "   -0.052 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A 111 "   -0.205 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  12 "   -0.040 2.00e-02 2.50e+03   8.36e-02 2.10e+02
        model="   1" pdb=" CG  TYR A  12 "   -0.007 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  12 "    0.039 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  12 "   -0.035 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  12 "   -0.011 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  12 "    0.065 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  12 "   -0.014 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  12 "   -0.117 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  12 "    0.102 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  12 "   -0.123 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  12 "   -0.042 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  12 "    0.184 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  50 "   -0.097 2.00e-02 2.50e+03   4.24e-02 5.40e+01
        model="   1" pdb=" CG  TYR A  50 "   -0.001 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  50 "    0.012 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  50 "    0.033 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  50 "    0.012 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  50 "   -0.007 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  50 "   -0.006 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  50 "   -0.042 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  50 "    0.022 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  50 "    0.082 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  50 "    0.025 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  50 "   -0.034 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.54 -     2.15: 79
        2.15 -     2.76: 3988
        2.76 -     3.38: 5724
        3.38 -     3.99: 6836
        3.99 -     4.60: 10260
  Nonbonded interactions: 26887
  Sorted by model distance:
  nonbonded model="   1" pdb=" OE1 GLU A  16 "
            model="   1" pdb=" HZ1 LYS A  19 "
     model   vdw
     1.539 1.850
  nonbonded model="   1" pdb=" HB2 LEU A   3 "
            model="   1" pdb="HD22 LEU A  61 "
     model   vdw
     1.714 2.440
  nonbonded model="   1" pdb="HD12 ILE A  71 "
            model="   1" pdb=" H   ILE A  77 "
     model   vdw
     1.752 2.270
  nonbonded model="   1" pdb=" H   VAL A  41 "
            model="   1" pdb="HG22 VAL A  41 "
     model   vdw
     1.826 2.270
  nonbonded model="   1" pdb=" HA  LEU A   3 "
            model="   1" pdb="HD23 LEU A  53 "
     model   vdw
     1.828 2.440
  ... (remaining 26882 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000 (Z=  0.000)
  Max. delta:    0.050 (Z=  3.442)
  Mean delta:    0.015 (Z=  0.780)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  74  ASP  CA
   A  74  ASP  CB
   A  74  ASP  CG        112.60   121.03    -8.43  1.00e+00  7.10e+01   8.4*sigma
   A 103  ASP  CA
   A 103  ASP  CB
   A 103  ASP  CG        112.60   119.02    -6.42  1.00e+00  4.12e+01   6.4*sigma
   A  74  ASP  CA
   A  74  ASP  C
   A  75  GLU  N         116.20   128.05   -11.85  2.00e+00  3.51e+01   5.9*sigma
   A  51  ILE  CA
   A  51  ILE  C
   A  52  PRO  N         116.90   125.11    -8.21  1.50e+00  2.99e+01   5.5*sigma
   A  98  SER  CA
   A  98  SER  CB
   A  98  SER  OG        111.10   120.22    -9.12  2.00e+00  2.08e+01   4.6*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.62    -4.52  1.00e+00  2.05e+01   4.5*sigma
   A 101  LYS  CA
   A 101  LYS  C
   A 102  PRO  N         116.90   123.36    -6.46  1.50e+00  1.86e+01   4.3*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.36    -4.26  1.00e+00  1.81e+01   4.3*sigma
   A 134  HIS  ND1
   A 134  HIS  CG
   A 134  HIS  CD2       106.10   110.34    -4.24  1.00e+00  1.80e+01   4.2*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   110.29    -4.19  1.00e+00  1.76e+01   4.2*sigma
   A  43  HIS  ND1
   A  43  HIS  CG
   A  43  HIS  CD2       106.10   110.29    -4.19  1.00e+00  1.76e+01   4.2*sigma
   A 116  ASP  CA
   A 116  ASP  C
   A 117  PRO  N         116.90   123.17    -6.27  1.50e+00  1.75e+01   4.2*sigma
   A  74  ASP  O
   A  74  ASP  C
   A  75  GLU  N         123.00   116.41     6.59  1.60e+00  1.69e+01   4.1*sigma
   A 138  HIS  ND1
   A 138  HIS  CG
   A 138  HIS  CD2       106.10   110.19    -4.09  1.00e+00  1.68e+01   4.1*sigma
   A 136  HIS  ND1
   A 136  HIS  CG
   A 136  HIS  CD2       106.10   110.17    -4.07  1.00e+00  1.65e+01   4.1*sigma

  Min. delta:    0.003 (Z=  0.002)
  Max. delta:   11.853 (Z=  8.427)
  Mean delta:    2.119 (Z=  1.216)

                      ----------Dihedral angles----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.007
  Max. delta:   45.198
  Mean delta:    9.418

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.420
  Mean delta:    0.098

                       ----------Planar groups----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.063
  Mean delta:    0.011

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.011   0.050   2241  Z= 0.555
    Angle     :  1.901  11.853   4077  Z= 0.878
    Chirality :  0.098   0.420    176
    Planarity :  0.009   0.063    326
    Dihedral  :  9.099  52.413    768
    Min Nonbonded Distance : 1.760
  
  Molprobity Statistics.
    All-atom Clashscore : 5.86
    Ramachandran Plot:
      Outliers :  2.92 %
      Allowed  :  8.03 %
      Favored  : 89.05 %
    Rotamer:
      Outliers :  0.00 %
      Allowed  :  3.23 %
      Favored  : 96.77 %
    Cbeta Deviations :  0.00 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.00 %
      Twisted Proline : 0.00 %
      Twisted General : 0.00 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -1.40 (0.66), residues: 137
    helix:  0.66 (0.60), residues: 63
    sheet:  None (None), residues: 0
    loop : -2.51 (0.63), residues: 74
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.004   0.001   HIS A 139 
   PHE   0.071   0.019   PHE A  67 
   TYR   0.095   0.018   TYR A  50 
   ARG   0.015   0.005   ARG A  21 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.004   0.001   HIS A 139 
   PHE   0.048   0.020   PHE A  67 
   TYR   0.070   0.017   TYR A  50 
   ARG   0.007   0.002   ARG A  21 

                     ----------Asn/Gln/His flips----------                     

  No backwards Asn/Gln/His sidechains found.

=================================== Summary ===================================

  Ramachandran outliers =   2.92 %
                favored =  89.05 %
  Rotamer outliers      =   0.00 %
  C-beta deviations     =     0
  Clashscore            =   5.86
  RMS(bonds)            =   0.0106
  RMS(angles)           =   1.90
  MolProbity score      =   1.89

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py

End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000 (Z=  0.000)
  Max. delta:    0.070 (Z=  3.414)
  Mean delta:    0.016 (Z=  0.852)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  45  PHE  CA
   A  45  PHE  CB
   A  45  PHE  CG        113.80   105.38     8.42  1.00e+00  7.09e+01   8.4*sigma
   A 116  ASP  CA
   A 116  ASP  C
   A 117  PRO  N         116.90   128.04   -11.14  1.50e+00  5.51e+01   7.4*sigma
   A   5  THR  N
   A   5  THR  CA
   A   5  THR  CB        111.50   119.95    -8.45  1.70e+00  2.47e+01   5.0*sigma
   A  51  ILE  CA
   A  51  ILE  C
   A  52  PRO  N         116.90   124.21    -7.31  1.50e+00  2.37e+01   4.9*sigma
   A 113  LYS  CA
   A 113  LYS  C
   A 114  PRO  N         116.90   124.07    -7.17  1.50e+00  2.29e+01   4.8*sigma
   A 116  ASP  O
   A 116  ASP  C
   A 117  PRO  N         123.00   115.69     7.31  1.60e+00  2.09e+01   4.6*sigma
   A 101  LYS  CA
   A 101  LYS  C
   A 102  PRO  N         116.90   123.55    -6.65  1.50e+00  1.96e+01   4.4*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.51    -4.41  1.00e+00  1.95e+01   4.4*sigma
   A  45  PHE  C
   A  46  SER  N
   A  46  SER  CA        121.70   129.63    -7.93  1.80e+00  1.94e+01   4.4*sigma
   A  53  LEU  CA
   A  53  LEU  C
   A  54  PRO  N         116.90   123.39    -6.49  1.50e+00  1.87e+01   4.3*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.42    -4.32  1.00e+00  1.87e+01   4.3*sigma
   A 138  HIS  ND1
   A 138  HIS  CG
   A 138  HIS  CD2       106.10   110.42    -4.32  1.00e+00  1.86e+01   4.3*sigma
   A  20  THR  CA
   A  20  THR  CB
   A  20  THR  OG1       109.60   116.07    -6.47  1.50e+00  1.86e+01   4.3*sigma
   A 138  HIS  C
   A 139  HIS  N
   A 139  HIS  CA        121.70   129.29    -7.59  1.80e+00  1.78e+01   4.2*sigma
   A  43  HIS  ND1
   A  43  HIS  CG
   A  43  HIS  CD2       106.10   110.27    -4.17  1.00e+00  1.74e+01   4.2*sigma
   A 116  ASP  CA
   A 116  ASP  CB
   A 116  ASP  CG        112.60   116.77    -4.17  1.00e+00  1.74e+01   4.2*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   110.25    -4.15  1.00e+00  1.72e+01   4.2*sigma
   A 134  HIS  ND1
   A 134  HIS  CG
   A 134  HIS  CD2       106.10   110.23    -4.13  1.00e+00  1.71e+01   4.1*sigma
   A  29  ASP  CA
   A  29  ASP  CB
   A  29  ASP  CG        112.60   116.66    -4.06  1.00e+00  1.65e+01   4.1*sigma
   A 136  HIS  ND1
   A 136  HIS  CG
   A 136  HIS  CD2       106.10   110.15    -4.05  1.00e+00  1.64e+01   4.1*sigma
   A   1  MET  N
   A   1  MET  CA
   A   1  MET  C         111.00    99.70    11.30  2.80e+00  1.63e+01   4.0*sigma

  Min. delta:    0.001 (Z=  0.001)
  Max. delta:   11.298 (Z=  8.418)
  Mean delta:    2.284 (Z=  1.305)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  21  ARG  CA
   A  21  ARG  C
   A  22  PRO  N
   A  22  PRO  CA        180.00   155.32    24.68  5.00e+00  2.44e+01   4.9*sigma
   A  85  LYS  CA
   A  85  LYS  C
   A  86  ILE  N
   A  86  ILE  CA        180.00   159.86    20.14  5.00e+00  1.62e+01   4.0*sigma

  Min. delta:    0.008
  Max. delta:   77.187
  Mean delta:   10.417

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.001
  Max. delta:    0.275
  Mean delta:    0.095

                       ----------Planar groups----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.053
  Mean delta:    0.014

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.011   0.070   2241  Z= 0.607
    Angle     :  2.012  11.298   4077  Z= 0.935
    Chirality :  0.095   0.275    176
    Planarity :  0.011   0.063    326
    Dihedral  : 10.199  77.187    768
    Min Nonbonded Distance : 1.742
  
  Molprobity Statistics.
    All-atom Clashscore : 1.80
    Ramachandran Plot:
      Outliers :  5.84 %
      Allowed  : 12.41 %
      Favored  : 81.75 %
    Rotamer:
      Outliers :  0.00 %
      Allowed  :  0.00 %
      Favored  : 100.00 %
    Cbeta Deviations :  0.00 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.00 %
      Twisted Proline : 0.00 %
      Twisted General : 0.00 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -1.09 (0.73), residues: 137
    helix:  0.88 (0.62), residues: 66
    sheet:  None (None), residues: 0
    loop : -2.44 (0.75), residues: 71
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.003   0.001   HIS A 139 
   PHE   0.078   0.020   PHE A  67 
   TYR   0.122   0.027   TYR A  81 
   ARG   0.036   0.009   ARG A 127 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.003   0.001   HIS A 139 
   PHE   0.052   0.017   PHE A  67 
   TYR   0.073   0.024   TYR A  81 
   ARG   0.017   0.004   ARG A 127 

                     ----------Asn/Gln/His flips----------                     

  No backwards Asn/Gln/His sidechains found.

=================================== Summary ===================================

  Ramachandran outliers =   5.84 %
                favored =  81.75 %
  Rotamer outliers      =   0.00 %
  C-beta deviations     =     0
  Clashscore            =   1.80
  RMS(bonds)            =   0.0114
  RMS(angles)           =   2.01
  MolProbity score      =   1.65

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py

End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000 (Z=  0.001)
  Max. delta:    0.050 (Z=  3.416)
  Mean delta:    0.015 (Z=  0.781)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 101  LYS  CA
   A 101  LYS  C
   A 102  PRO  N         116.90   126.45    -9.55  1.50e+00  4.05e+01   6.4*sigma
   A 138  HIS  C
   A 139  HIS  N
   A 139  HIS  CA        121.70   132.97   -11.27  1.80e+00  3.92e+01   6.3*sigma
   A  51  ILE  CA
   A  51  ILE  C
   A  52  PRO  N         116.90   124.87    -7.97  1.50e+00  2.82e+01   5.3*sigma
   A  29  ASP  CA
   A  29  ASP  CB
   A  29  ASP  CG        112.60   117.86    -5.26  1.00e+00  2.77e+01   5.3*sigma
   A  88  ASP  CA
   A  88  ASP  CB
   A  88  ASP  CG        112.60   107.43     5.17  1.00e+00  2.67e+01   5.2*sigma
   A  43  HIS  ND1
   A  43  HIS  CG
   A  43  HIS  CD2       106.10   110.53    -4.43  1.00e+00  1.96e+01   4.4*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.47    -4.37  1.00e+00  1.91e+01   4.4*sigma
   A 139  HIS  CA
   A 139  HIS  CB
   A 139  HIS  CG        113.80   118.06    -4.26  1.00e+00  1.82e+01   4.3*sigma
   A 139  HIS  N
   A 139  HIS  CA
   A 139  HIS  C         111.00   122.75   -11.75  2.80e+00  1.76e+01   4.2*sigma
   A 134  HIS  ND1
   A 134  HIS  CG
   A 134  HIS  CD2       106.10   110.22    -4.12  1.00e+00  1.70e+01   4.1*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   110.20    -4.10  1.00e+00  1.68e+01   4.1*sigma
   A 138  HIS  ND1
   A 138  HIS  CG
   A 138  HIS  CD2       106.10   110.15    -4.05  1.00e+00  1.64e+01   4.0*sigma
   A 136  HIS  ND1
   A 136  HIS  CG
   A 136  HIS  CD2       106.10   110.13    -4.03  1.00e+00  1.63e+01   4.0*sigma

  Min. delta:    0.002 (Z=  0.001)
  Max. delta:   11.781 (Z=  6.365)
  Mean delta:    2.093 (Z=  1.166)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 116  ASP  CA
   A 116  ASP  C
   A 117  PRO  N
   A 117  PRO  CA        180.00   142.49    37.51  5.00e+00  5.63e+01   7.5*sigma
   A  88  ASP  CA
   A  88  ASP  C
   A  89  TYR  N
   A  89  TYR  CA        180.00   145.75    34.25  5.00e+00  4.69e+01   6.8*sigma
   A 115  ALA  CA
   A 115  ALA  C
   A 116  ASP  N
   A 116  ASP  CA        180.00   156.02    23.98  5.00e+00  2.30e+01   4.8*sigma
   A 138  HIS  CA
   A 138  HIS  C
   A 139  HIS  N
   A 139  HIS  CA        180.00   157.16    22.84  5.00e+00  2.09e+01   4.6*sigma

  Min. delta:    0.012
  Max. delta:   83.443
  Mean delta:   11.162

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.001
  Max. delta:    0.405
  Mean delta:    0.097

                       ----------Planar groups----------                       

  atoms                 rms_deltas   delta_max    residual   deviation
   A  15  PHE  CB
   A  15  PHE  CG
   A  15  PHE  CD1
   A  15  PHE  CD2
   A  15  PHE  CE1
   A  15  PHE  CE2
   A  15  PHE  CZ            0.061       0.096       65.66   4.8*sigma

  Min. delta:    0.000
  Max. delta:    0.175
  Mean delta:    0.019

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.011   0.050   2241  Z= 0.556
    Angle     :  1.878  11.781   4077  Z= 0.849
    Chirality :  0.097   0.405    176
    Planarity :  0.015   0.175    326
    Dihedral  : 10.252  83.443    768
    Min Nonbonded Distance : 1.712
  
  Molprobity Statistics.
    All-atom Clashscore : 4.06
    Ramachandran Plot:
      Outliers :  0.73 %
      Allowed  : 16.06 %
      Favored  : 83.21 %
    Rotamer:
      Outliers :  0.81 %
      Allowed  :  3.23 %
      Favored  : 95.97 %
    Cbeta Deviations :  0.00 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.00 %
      Twisted Proline : 14.29 %
      Twisted General : 0.76 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -0.54 (0.77), residues: 137
    helix:  2.27 (0.66), residues: 57
    sheet:  None (None), residues: 0
    loop : -2.57 (0.74), residues: 80
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.005   0.001   HIS A 139 
   PHE   0.133   0.024   PHE A  15 
   TYR   0.087   0.021   TYR A  68 
   ARG   0.064   0.014   ARG A  58 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.005   0.001   HIS A 139 
   PHE   0.096   0.024   PHE A  15 
   TYR   0.062   0.019   TYR A  12 
   ARG   0.015   0.004   ARG A  58 

                     ----------Asn/Gln/His flips----------                     

  No backwards Asn/Gln/His sidechains found.

=================================== Summary ===================================

  Ramachandran outliers =   0.73 %
                favored =  83.21 %
  Rotamer outliers      =   0.81 %
  C-beta deviations     =     0
  Clashscore            =   4.06
  RMS(bonds)            =   0.0107
  RMS(angles)           =   1.88
  MolProbity score      =   1.88

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py

End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000 (Z=  0.001)
  Max. delta:    0.049 (Z=  3.357)
  Mean delta:    0.016 (Z=  0.819)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 113  LYS  CA
   A 113  LYS  C
   A 114  PRO  N         116.90   124.84    -7.94  1.50e+00  2.80e+01   5.3*sigma
   A  14  VAL  CA
   A  14  VAL  CB
   A  14  VAL  CG1       110.40   119.25    -8.85  1.70e+00  2.71e+01   5.2*sigma
   A  50  TYR  C
   A  51  ILE  N
   A  51  ILE  CA        121.70   130.78    -9.08  1.80e+00  2.55e+01   5.0*sigma
   A  88  ASP  CA
   A  88  ASP  CB
   A  88  ASP  CG        112.60   117.49    -4.89  1.00e+00  2.39e+01   4.9*sigma
   A  42  GLY  C
   A  43  HIS  N
   A  43  HIS  CA        121.70   130.24    -8.54  1.80e+00  2.25e+01   4.7*sigma
   A  43  HIS  ND1
   A  43  HIS  CG
   A  43  HIS  CD2       106.10   110.84    -4.74  1.00e+00  2.24e+01   4.7*sigma
   A  97  SER  C
   A  98  SER  N
   A  98  SER  CA        121.70   130.07    -8.37  1.80e+00  2.16e+01   4.6*sigma
   A  14  VAL  N
   A  14  VAL  CA
   A  14  VAL  CB        111.50   119.27    -7.77  1.70e+00  2.09e+01   4.6*sigma
   A 136  HIS  ND1
   A 136  HIS  CG
   A 136  HIS  CD2       106.10   110.64    -4.54  1.00e+00  2.06e+01   4.5*sigma
   A 138  HIS  ND1
   A 138  HIS  CG
   A 138  HIS  CD2       106.10   110.63    -4.53  1.00e+00  2.05e+01   4.5*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.58    -4.48  1.00e+00  2.01e+01   4.5*sigma
   A 134  HIS  ND1
   A 134  HIS  CG
   A 134  HIS  CD2       106.10   110.54    -4.44  1.00e+00  1.98e+01   4.4*sigma
   A   5  THR  CA
   A   5  THR  C
   A   6  PRO  N         116.90   123.44    -6.54  1.50e+00  1.90e+01   4.4*sigma
   A 101  LYS  CA
   A 101  LYS  C
   A 102  PRO  N         116.90   123.43    -6.53  1.50e+00  1.89e+01   4.4*sigma
   A  90  SER  N
   A  90  SER  CA
   A  90  SER  CB        110.50   117.82    -7.32  1.70e+00  1.85e+01   4.3*sigma
   A  13  SER  C
   A  14  VAL  N
   A  14  VAL  CA        121.70   129.40    -7.70  1.80e+00  1.83e+01   4.3*sigma
   A  29  ASP  CA
   A  29  ASP  CB
   A  29  ASP  CG        112.60   116.87    -4.27  1.00e+00  1.82e+01   4.3*sigma
   A  43  HIS  C
   A  43  HIS  CA
   A  43  HIS  CB        110.10   102.19     7.91  1.90e+00  1.73e+01   4.2*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   110.21    -4.11  1.00e+00  1.69e+01   4.1*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.13    -4.03  1.00e+00  1.62e+01   4.0*sigma

  Min. delta:    0.000 (Z=  0.000)
  Max. delta:   11.114 (Z=  5.295)
  Mean delta:    2.295 (Z=  1.257)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  77  ILE  CA
   A  77  ILE  C
   A  78  ILE  N
   A  78  ILE  CA        180.00   155.45    24.55  5.00e+00  2.41e+01   4.9*sigma
   A  79  LYS  CA
   A  79  LYS  C
   A  80  GLY  N
   A  80  GLY  CA        180.00   159.54    20.46  5.00e+00  1.67e+01   4.1*sigma

  Min. delta:    0.020
  Max. delta:   53.192
  Mean delta:   10.370

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.460
  Mean delta:    0.106

                       ----------Planar groups----------                       

  atoms                 rms_deltas   delta_max    residual   deviation
   A  12  TYR  CB
   A  12  TYR  CG
   A  12  TYR  CD1
   A  12  TYR  CD2
   A  12  TYR  CE1
   A  12  TYR  CE2
   A  12  TYR  CZ
   A  12  TYR  OH            0.056       0.096       62.71   4.8*sigma
   A  89  TYR  CB
   A  89  TYR  CG
   A  89  TYR  CD1
   A  89  TYR  CD2
   A  89  TYR  CE1
   A  89  TYR  CE2
   A  89  TYR  CZ
   A  89  TYR  OH            0.077       0.095      117.37   4.7*sigma

  Min. delta:    0.000
  Max. delta:    0.077
  Mean delta:    0.014

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.011   0.049   2241  Z= 0.583
    Angle     :  2.061  11.114   4077  Z= 0.920
    Chirality :  0.106   0.460    176
    Planarity :  0.012   0.093    326
    Dihedral  :  9.063  53.192    768
    Min Nonbonded Distance : 1.678
  
  Molprobity Statistics.
    All-atom Clashscore : 2.26
    Ramachandran Plot:
      Outliers :  3.65 %
      Allowed  : 13.87 %
      Favored  : 82.48 %
    Rotamer:
      Outliers :  0.00 %
      Allowed  :  2.42 %
      Favored  : 97.58 %
    Cbeta Deviations :  1.52 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.76 %
      Twisted Proline : 0.00 %
      Twisted General : 0.00 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -2.07 (0.68), residues: 137
    helix:  0.08 (0.62), residues: 57
    sheet:  None (None), residues: 0
    loop : -2.63 (0.68), residues: 80
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.006   0.002   HIS A 139 
   PHE   0.081   0.020   PHE A  67 
   TYR   0.173   0.033   TYR A  89 
   ARG   0.040   0.010   ARG A  21 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.006   0.002   HIS A 139 
   PHE   0.054   0.017   PHE A  67 
   TYR   0.124   0.028   TYR A  89 
   ARG   0.019   0.004   ARG A  58 

                     ----------Asn/Gln/His flips----------                     

  No backwards Asn/Gln/His sidechains found.

=================================== Summary ===================================

  Ramachandran outliers =   3.65 %
                favored =  82.48 %
  Rotamer outliers      =   0.00 %
  C-beta deviations     =     2
  Clashscore            =   2.26
  RMS(bonds)            =   0.0112
  RMS(angles)           =   2.06
  MolProbity score      =   1.70

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py

============================== Collecting inputs ==============================


End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000 (Z=  0.001)
  Max. delta:    0.043 (Z=  3.429)
  Mean delta:    0.015 (Z=  0.798)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  74  ASP  CA
   A  74  ASP  CB
   A  74  ASP  CG        112.60   118.81    -6.21  1.00e+00  3.86e+01   6.2*sigma
   A 117  PRO  N
   A 117  PRO  CA
   A 117  PRO  C         112.10   125.41   -13.31  2.50e+00  2.83e+01   5.3*sigma
   A 115  ALA  C
   A 116  ASP  N
   A 116  ASP  CA        121.70   130.89    -9.19  1.80e+00  2.61e+01   5.1*sigma
   A 101  LYS  CA
   A 101  LYS  C
   A 102  PRO  N         116.90   124.28    -7.38  1.50e+00  2.42e+01   4.9*sigma
   A  95  ASP  CA
   A  95  ASP  CB
   A  95  ASP  CG        112.60   108.12     4.48  1.00e+00  2.01e+01   4.5*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.50    -4.40  1.00e+00  1.93e+01   4.4*sigma
   A 116  ASP  N
   A 116  ASP  CA
   A 116  ASP  CB        110.50   103.15     7.35  1.70e+00  1.87e+01   4.3*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   110.21    -4.11  1.00e+00  1.69e+01   4.1*sigma
   A 134  HIS  ND1
   A 134  HIS  CG
   A 134  HIS  CD2       106.10   110.19    -4.09  1.00e+00  1.67e+01   4.1*sigma
   A 136  HIS  ND1
   A 136  HIS  CG
   A 136  HIS  CD2       106.10   110.13    -4.03  1.00e+00  1.62e+01   4.0*sigma

  Min. delta:    0.000 (Z=  0.000)
  Max. delta:   13.307 (Z=  6.210)
  Mean delta:    2.101 (Z=  1.170)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 114  PRO  CA
   A 114  PRO  C
   A 115  ALA  N
   A 115  ALA  CA        180.00   140.21    39.79  5.00e+00  6.33e+01   8.0*sigma
   A 117  PRO  CA
   A 117  PRO  C
   A 118  ASP  N
   A 118  ASP  CA        180.00   142.91    37.09  5.00e+00  5.50e+01   7.4*sigma
   A 116  ASP  CA
   A 116  ASP  C
   A 117  PRO  N
   A 117  PRO  CA        180.00  -158.89   -21.11  5.00e+00  1.78e+01   4.2*sigma

  Min. delta:    0.043
  Max. delta:   53.090
  Mean delta:   10.293

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.408
  Mean delta:    0.096

                       ----------Planar groups----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.088
  Mean delta:    0.013

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

                       ----------Angle outliers----------                      

   A 117  PRO  HA , Angle CB-CA-HA, observed: 123.341, delta from target: -14.341

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.011   0.043   2241  Z= 0.568
    Angle     :  1.909  14.341   4077  Z= 0.858
    Chirality :  0.096   0.408    176
    Planarity :  0.009   0.069    326
    Dihedral  :  9.652  53.090    768
    Min Nonbonded Distance : 1.550
  
  Molprobity Statistics.
    All-atom Clashscore : 6.31
    Ramachandran Plot:
      Outliers :  3.65 %
      Allowed  :  8.03 %
      Favored  : 88.32 %
    Rotamer:
      Outliers :  1.61 %
      Allowed  :  0.81 %
      Favored  : 97.58 %
    Cbeta Deviations :  0.00 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.00 %
      Twisted Proline : 0.00 %
      Twisted General : 1.53 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -0.17 (0.72), residues: 137
    helix:  2.00 (0.56), residues: 66
    sheet:  None (None), residues: 0
    loop : -2.37 (0.75), residues: 71
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.007   0.002   HIS A 138 
   PHE   0.049   0.009   PHE A  15 
   TYR   0.101   0.018   TYR A  12 
   ARG   0.070   0.011   ARG A  58 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.007   0.002   HIS A 138 
   PHE   0.029   0.008   PHE A  15 
   TYR   0.082   0.019   TYR A  12 
   ARG   0.006   0.001   ARG A  21 

                     ----------Asn/Gln/His flips----------                     

  No backwards Asn/Gln/His sidechains found.

=================================== Summary ===================================


End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000 (Z=  0.001)
  Max. delta:    0.043 (Z=  3.429)
  Mean delta:    0.015 (Z=  0.798)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  74  ASP  CA
   A  74  ASP  CB
   A  74  ASP  CG        112.60   118.81    -6.21  1.00e+00  3.86e+01   6.2*sigma
   A 117  PRO  N
   A 117  PRO  CA
   A 117  PRO  C         112.10   125.41   -13.31  2.50e+00  2.83e+01   5.3*sigma
   A 115  ALA  C
   A 116  ASP  N
   A 116  ASP  CA        121.70   130.89    -9.19  1.80e+00  2.61e+01   5.1*sigma
   A 101  LYS  CA
   A 101  LYS  C
   A 102  PRO  N         116.90   124.28    -7.38  1.50e+00  2.42e+01   4.9*sigma
   A  95  ASP  CA
   A  95  ASP  CB
   A  95  ASP  CG        112.60   108.12     4.48  1.00e+00  2.01e+01   4.5*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.50    -4.40  1.00e+00  1.93e+01   4.4*sigma
   A 116  ASP  N
   A 116  ASP  CA
   A 116  ASP  CB        110.50   103.15     7.35  1.70e+00  1.87e+01   4.3*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   110.21    -4.11  1.00e+00  1.69e+01   4.1*sigma
   A 134  HIS  ND1
   A 134  HIS  CG
   A 134  HIS  CD2       106.10   110.19    -4.09  1.00e+00  1.67e+01   4.1*sigma
   A 136  HIS  ND1
   A 136  HIS  CG
   A 136  HIS  CD2       106.10   110.13    -4.03  1.00e+00  1.62e+01   4.0*sigma

  Min. delta:    0.000 (Z=  0.000)
  Max. delta:   13.307 (Z=  6.210)
  Mean delta:    2.101 (Z=  1.170)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 114  PRO  CA
   A 114  PRO  C
   A 115  ALA  N
   A 115  ALA  CA        180.00   140.21    39.79  5.00e+00  6.33e+01   8.0*sigma
   A 117  PRO  CA
   A 117  PRO  C
   A 118  ASP  N
   A 118  ASP  CA        180.00   142.91    37.09  5.00e+00  5.50e+01   7.4*sigma
   A 116  ASP  CA
   A 116  ASP  C
   A 117  PRO  N
   A 117  PRO  CA        180.00  -158.89   -21.11  5.00e+00  1.78e+01   4.2*sigma

  Min. delta:    0.043
  Max. delta:   53.090
  Mean delta:   10.293

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.408
  Mean delta:    0.096

                       ----------Planar groups----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.088
  Mean delta:    0.013

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

                       ----------Angle outliers----------                      

   A 117  PRO  HA , Angle CB-CA-HA, observed: 123.341, delta from target: -14.341

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.011   0.043   2241  Z= 0.568
    Angle     :  1.909  14.341   4077  Z= 0.858
    Chirality :  0.096   0.408    176
    Planarity :  0.009   0.069    326
    Dihedral  :  9.652  53.090    768
    Min Nonbonded Distance : 1.550
  
  Molprobity Statistics.
    All-atom Clashscore : 6.31
    Ramachandran Plot:
      Outliers :  3.65 %
      Allowed  :  8.03 %
      Favored  : 88.32 %
    Rotamer:
      Outliers :  1.61 %
      Allowed  :  0.81 %
      Favored  : 97.58 %
    Cbeta Deviations :  0.00 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.00 %
      Twisted Proline : 0.00 %
      Twisted General : 1.53 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -0.17 (0.72), residues: 137
    helix:  2.00 (0.56), residues: 66
    sheet:  None (None), residues: 0
    loop : -2.37 (0.75), residues: 71
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.007   0.002   HIS A 138 
   PHE   0.049   0.009   PHE A  15 
   TYR   0.101   0.018   TYR A  12 
   ARG   0.070   0.011   ARG A  58 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.007   0.002   HIS A 138 
   PHE   0.029   0.008   PHE A  15 
   TYR   0.082   0.019   TYR A  12 
   ARG   0.006   0.001   ARG A  21 

                     ----------Asn/Gln/His flips----------                     

  No backwards Asn/Gln/His sidechains found.

=================================== Summary ===================================

  Ramachandran outliers =   3.65 %
                favored =  88.32 %
  Rotamer outliers      =   1.61 %
  C-beta deviations     =     0
  Clashscore            =   6.31
  RMS(bonds)            =   0.0107
  RMS(angles)           =   1.91
  MolProbity score      =   2.10

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py
  Ramachandran outliers =   3.65 %
                favored =  88.32 %
  Rotamer outliers      =   1.61 %
  C-beta deviations     =     0
  Clashscore            =   6.31
  RMS(bonds)            =   0.0107
  RMS(angles)           =   1.91
  MolProbity score      =   2.10

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py

End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  atoms                 ideal   model   delta   sigma   slack  residual   deviation
   A 117  PRO  C
   A 118  ASP  N           1.33     1.41    -0.08  1.40e-02  3.38e+01   5.8*sigma
   A 116  ASP  C
   A 116  ASP  O           1.23     1.34    -0.11  2.00e-02  3.09e+01   5.6*sigma

  Min. delta:    0.000 (Z=  0.000)
  Max. delta:    0.111 (Z=  5.813)
  Mean delta:    0.018 (Z=  0.920)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  74  ASP  CA
   A  74  ASP  CB
   A  74  ASP  CG        112.60   104.62     7.98  1.00e+00  6.37e+01   8.0*sigma
   A 117  PRO  N
   A 117  PRO  CA
   A 117  PRO  C         112.10   130.13   -18.03  2.50e+00  5.20e+01   7.2*sigma
   A  29  ASP  CA
   A  29  ASP  CB
   A  29  ASP  CG        112.60   119.62    -7.02  1.00e+00  4.93e+01   7.0*sigma
   A  98  SER  C
   A  99  LEU  N
   A  99  LEU  CA        121.70   134.05   -12.35  1.80e+00  4.71e+01   6.9*sigma
   A 116  ASP  C
   A 116  ASP  CA
   A 116  ASP  CB        110.10   121.83   -11.73  1.90e+00  3.81e+01   6.2*sigma
   A 138  HIS  C
   A 139  HIS  N
   A 139  HIS  CA        121.70   131.87   -10.17  1.80e+00  3.19e+01   5.7*sigma
   A 116  ASP  CA
   A 116  ASP  CB
   A 116  ASP  CG        112.60   118.23    -5.63  1.00e+00  3.17e+01   5.6*sigma
   A 113  LYS  CA
   A 113  LYS  C
   A 114  PRO  N         116.90   124.83    -7.93  1.50e+00  2.79e+01   5.3*sigma
   A 118  ASP  N
   A 118  ASP  CA
   A 118  ASP  CB        110.50   118.88    -8.38  1.70e+00  2.43e+01   4.9*sigma
   A  99  LEU  N
   A  99  LEU  CA
   A  99  LEU  C         111.00   124.65   -13.65  2.80e+00  2.38e+01   4.9*sigma
   A 117  PRO  N
   A 117  PRO  CA
   A 117  PRO  CB        103.00    97.74     5.26  1.10e+00  2.29e+01   4.8*sigma
   A  51  ILE  CA
   A  51  ILE  C
   A  52  PRO  N         116.90   123.81    -6.91  1.50e+00  2.12e+01   4.6*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   110.70    -4.60  1.00e+00  2.12e+01   4.6*sigma
   A 139  HIS  CA
   A 139  HIS  CB
   A 139  HIS  CG        113.80   118.40    -4.60  1.00e+00  2.11e+01   4.6*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.50    -4.40  1.00e+00  1.94e+01   4.4*sigma
   A  43  HIS  ND1
   A  43  HIS  CG
   A  43  HIS  CD2       106.10   110.50    -4.40  1.00e+00  1.93e+01   4.4*sigma
   A 136  HIS  ND1
   A 136  HIS  CG
   A 136  HIS  CD2       106.10   110.40    -4.30  1.00e+00  1.85e+01   4.3*sigma
   A 134  HIS  ND1
   A 134  HIS  CG
   A 134  HIS  CD2       106.10   110.39    -4.29  1.00e+00  1.84e+01   4.3*sigma
   A 101  LYS  CA
   A 101  LYS  C
   A 102  PRO  N         116.90   123.29    -6.39  1.50e+00  1.81e+01   4.3*sigma
   A  99  LEU  N
   A  99  LEU  CA
   A  99  LEU  CB        110.50   103.53     6.97  1.70e+00  1.68e+01   4.1*sigma
   A 116  ASP  O
   A 116  ASP  C
   A 117  PRO  N         123.00   116.57     6.43  1.60e+00  1.62e+01   4.0*sigma
   A  53  LEU  CA
   A  53  LEU  C
   A  54  PRO  N         116.90   122.92    -6.02  1.50e+00  1.61e+01   4.0*sigma

  Min. delta:    0.000 (Z=  0.000)
  Max. delta:   18.028 (Z=  7.979)
  Mean delta:    2.363 (Z=  1.317)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 116  ASP  CA
   A 116  ASP  C
   A 117  PRO  N
   A 117  PRO  CA        180.00  -144.47   -35.53  5.00e+00  5.05e+01   7.1*sigma
   A 119  LEU  CA
   A 119  LEU  C
   A 120  GLU  N
   A 120  GLU  CA        180.00   149.99    30.01  5.00e+00  3.60e+01   6.0*sigma
   A  96  GLY  CA
   A  96  GLY  C
   A  97  SER  N
   A  97  SER  CA        180.00   154.42    25.58  5.00e+00  2.62e+01   5.1*sigma
   A 121  GLY  CA
   A 121  GLY  C
   A 122  ILE  N
   A 122  ILE  CA        180.00   156.02    23.98  5.00e+00  2.30e+01   4.8*sigma
   A  89  TYR  CA
   A  89  TYR  C
   A  90  SER  N
   A  90  SER  CA        180.00   157.11    22.89  5.00e+00  2.10e+01   4.6*sigma
   A 136  HIS  CA
   A 136  HIS  C
   A 137  HIS  N
   A 137  HIS  CA        180.00   159.61    20.39  5.00e+00  1.66e+01   4.1*sigma

  Min. delta:    0.012
  Max. delta:   83.975
  Mean delta:   11.683

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.002
  Max. delta:    0.680
  Mean delta:    0.131

                       ----------Planar groups----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.060
  Mean delta:    0.012

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

                       ----------Angle outliers----------                      

   A  89  TYR  HA , Angle N-CA-HA, observed: 97.993, delta from target: 12.007
   A  99  LEU  HA , Angle C-CA-HA, observed: 96.858, delta from target: 12.142
   A 117  PRO  HA , Angle C-CA-HA, observed: 96.577, delta from target: 12.423
   A   2  LEU  HG , Angle CD2-CG-HG, observed: 120.757, delta from target: -12.757
   A 118  ASP  HA , Angle N-CA-HA, observed: 96.874, delta from target: 13.126
   A 117  PRO  HA , Angle CB-CA-HA, observed: 129.543, delta from target: -20.543

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.012   0.111   2241  Z= 0.655
    Angle     :  2.151  20.543   4077  Z= 0.967
    Chirality :  0.131   0.680    176
    Planarity :  0.009   0.052    326
    Dihedral  : 10.292  83.975    768
    Min Nonbonded Distance : 1.718
  
  Molprobity Statistics.
    All-atom Clashscore : 2.71
    Ramachandran Plot:
      Outliers :  5.84 %
      Allowed  : 12.41 %
      Favored  : 81.75 %
    Rotamer:
      Outliers :  0.00 %
      Allowed  :  2.42 %
      Favored  : 97.58 %
    Cbeta Deviations :  3.03 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.00 %
      Twisted Proline : 14.29 %
      Twisted General : 0.76 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -1.14 (0.73), residues: 137
    helix:  1.47 (0.57), residues: 75
    sheet:  None (None), residues: 0
    loop : -3.89 (0.73), residues: 62
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.006   0.001   HIS A 139 
   PHE   0.077   0.019   PHE A  45 
   TYR   0.083   0.014   TYR A 105 
   ARG   0.046   0.010   ARG A  58 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.006   0.001   HIS A 139 
   PHE   0.030   0.011   PHE A  45 
   TYR   0.057   0.012   TYR A 105 
   ARG   0.012   0.003   ARG A  21 

                     ----------Asn/Gln/His flips----------                     

  No backwards Asn/Gln/His sidechains found.

=================================== Summary ===================================

Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  

  Ramachandran outliers =   5.84 %
                favored =  81.75 %
  Rotamer outliers      =   0.00 %
  C-beta deviations     =     4
  Clashscore            =   2.71
  RMS(bonds)            =   0.0125
  RMS(angles)           =   2.15
  MolProbity score      =   1.77

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py

============================== Collecting inputs ==============================


End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000 (Z=  0.000)
  Max. delta:    0.050 (Z=  3.585)
  Mean delta:    0.015 (Z=  0.833)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 101  LYS  CA
   A 101  LYS  C
   A 102  PRO  N         116.90   125.91    -9.01  1.50e+00  3.61e+01   6.0*sigma
   A 116  ASP  CA
   A 116  ASP  C
   A 117  PRO  N         116.90   124.93    -8.03  1.50e+00  2.86e+01   5.4*sigma
   A 113  LYS  CA
   A 113  LYS  C
   A 114  PRO  N         116.90   124.40    -7.50  1.50e+00  2.50e+01   5.0*sigma
   A 133  GLU  N
   A 133  GLU  CA
   A 133  GLU  CB        110.50   118.68    -8.18  1.70e+00  2.31e+01   4.8*sigma
   A  51  ILE  CA
   A  51  ILE  C
   A  52  PRO  N         116.90   124.01    -7.11  1.50e+00  2.25e+01   4.7*sigma
   A  42  GLY  C
   A  43  HIS  N
   A  43  HIS  CA        121.70   130.09    -8.39  1.80e+00  2.17e+01   4.7*sigma
   A 136  HIS  ND1
   A 136  HIS  CG
   A 136  HIS  CD2       106.10   110.74    -4.64  1.00e+00  2.15e+01   4.6*sigma
   A 134  HIS  ND1
   A 134  HIS  CG
   A 134  HIS  CD2       106.10   110.72    -4.62  1.00e+00  2.13e+01   4.6*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.56    -4.46  1.00e+00  1.99e+01   4.5*sigma
   A 139  HIS  N
   A 139  HIS  CA
   A 139  HIS  CB        110.50   118.00    -7.50  1.70e+00  1.95e+01   4.4*sigma
   A  44  ASP  CA
   A  44  ASP  CB
   A  44  ASP  CG        112.60   108.24     4.36  1.00e+00  1.90e+01   4.4*sigma
   A  43  HIS  ND1
   A  43  HIS  CG
   A  43  HIS  CD2       106.10   110.41    -4.31  1.00e+00  1.86e+01   4.3*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   110.40    -4.30  1.00e+00  1.85e+01   4.3*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.37    -4.27  1.00e+00  1.82e+01   4.3*sigma
   A  29  ASP  CA
   A  29  ASP  CB
   A  29  ASP  CG        112.60   116.75    -4.15  1.00e+00  1.72e+01   4.1*sigma
   A 136  HIS  N
   A 136  HIS  CA
   A 136  HIS  C         111.00   122.43   -11.43  2.80e+00  1.66e+01   4.1*sigma
   A 138  HIS  CA
   A 138  HIS  CB
   A 138  HIS  CG        113.80   117.83    -4.03  1.00e+00  1.62e+01   4.0*sigma

  Min. delta:    0.001 (Z=  0.000)
  Max. delta:   11.425 (Z=  6.009)
  Mean delta:    2.254 (Z=  1.250)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  98  SER  CA
   A  98  SER  C
   A  99  LEU  N
   A  99  LEU  CA        180.00   140.63    39.37  5.00e+00  6.20e+01   7.9*sigma
   A 138  HIS  CA
   A 138  HIS  C
   A 139  HIS  N
   A 139  HIS  CA        180.00   151.13    28.87  5.00e+00  3.33e+01   5.8*sigma
   A 135  HIS  CA
   A 135  HIS  C
   A 136  HIS  N
   A 136  HIS  CA        180.00   152.33    27.67  5.00e+00  3.06e+01   5.5*sigma
   A 133  GLU  CA
   A 133  GLU  C
   A 134  HIS  N
   A 134  HIS  CA        180.00   153.08    26.92  5.00e+00  2.90e+01   5.4*sigma
   A 132  LEU  CA
   A 132  LEU  C
   A 133  GLU  N
   A 133  GLU  CA        180.00   155.19    24.81  5.00e+00  2.46e+01   5.0*sigma
   A  99  LEU  CA
   A  99  LEU  C
   A 100  GLN  N
   A 100  GLN  CA        180.00   156.75    23.25  5.00e+00  2.16e+01   4.7*sigma
   A 136  HIS  CA
   A 136  HIS  C
   A 137  HIS  N
   A 137  HIS  CA        180.00   159.68    20.32  5.00e+00  1.65e+01   4.1*sigma

  Min. delta:    0.032
  Max. delta:   77.847
  Mean delta:   10.613

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.001
  Max. delta:    0.644
  Mean delta:    0.125

                       ----------Planar groups----------                       

  atoms                 rms_deltas   delta_max    residual   deviation
   A 105  TYR  CB
   A 105  TYR  CG
   A 105  TYR  CD1
   A 105  TYR  CD2
   A 105  TYR  CE1
   A 105  TYR  CE2
   A 105  TYR  CZ
   A 105  TYR  OH            0.059       0.111       69.79   5.5*sigma
   A  45  PHE  CB
   A  45  PHE  CG
   A  45  PHE  CD1
   A  45  PHE  CD2
   A  45  PHE  CE1
   A  45  PHE  CE2
   A  45  PHE  CZ            0.059       0.096       60.24   4.8*sigma

  Min. delta:    0.000
  Max. delta:    0.074
  Mean delta:    0.014

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

                       ----------Angle outliers----------                      

   A 136  HIS  HA , Angle CB-CA-HA, observed: 121.715, delta from target: -12.715
   A 130  SER  HA , Angle N-CA-HA, observed: 95.737, delta from target: 14.263

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.011   0.050   2241  Z= 0.593
    Angle     :  2.054  14.263   4077  Z= 0.919
    Chirality :  0.125   0.644    176
    Planarity :  0.012   0.094    326
    Dihedral  :  9.823  86.463    768
    Min Nonbonded Distance : 1.719
  
  Molprobity Statistics.
    All-atom Clashscore : 1.35
    Ramachandran Plot:
      Outliers :  5.84 %
      Allowed  :  5.11 %
      Favored  : 89.05 %
    Rotamer:
      Outliers :  0.00 %
      Allowed  :  0.00 %
      Favored  : 100.00 %
    Cbeta Deviations :  2.27 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.00 %
      Twisted Proline : 0.00 %
      Twisted General : 0.76 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -0.81 (0.73), residues: 137
    helix:  0.82 (0.50), residues: 91
    sheet:  None (None), residues: 0
    loop : -3.48 (0.99), residues: 46
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.008   0.002   HIS A 138 
   PHE   0.193   0.032   PHE A  45 
   TYR   0.145   0.021   TYR A 105 
   ARG   0.041   0.009   ARG A 127 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.008   0.002   HIS A 138 
   PHE   0.096   0.024   PHE A  45 
   TYR   0.111   0.024   TYR A 105 
   ARG   0.015   0.004   ARG A  21 

                     ----------Asn/Gln/His flips----------                     

   A 100  GLN

=================================== Summary ===================================


End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  atoms                 ideal   model   delta   sigma   slack  residual   deviation
   A  43  HIS  CB
   A  43  HIS  CG          1.50     1.44     0.06  1.40e-02  1.94e+01   4.4*sigma
   A  71  ILE  C
   A  72  ASN  N           1.33     1.39    -0.06  1.40e-02  1.84e+01   4.3*sigma

  Min. delta:    0.000 (Z=  0.000)
  Max. delta:    0.062 (Z=  4.404)
  Mean delta:    0.017 (Z=  0.901)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  72  ASN  CA
   A  72  ASN  CB
   A  72  ASN  CG        112.60   122.73   -10.13  1.00e+00  1.03e+02  10.1*sigma
   A  74  ASP  CA
   A  74  ASP  CB
   A  74  ASP  CG        112.60   121.46    -8.86  1.00e+00  7.85e+01   8.9*sigma
   A  43  HIS  C
   A  43  HIS  CA
   A  43  HIS  CB        110.10    97.58    12.52  1.90e+00  4.34e+01   6.6*sigma
   A  72  ASN  OD1
   A  72  ASN  CG
   A  72  ASN  ND2       122.60   116.52     6.08  1.00e+00  3.70e+01   6.1*sigma
   A   5  THR  CA
   A   5  THR  C
   A   6  PRO  N         116.90   125.80    -8.90  1.50e+00  3.52e+01   5.9*sigma
   A  76  SER  CA
   A  76  SER  CB
   A  76  SER  OG        111.10   122.52   -11.42  2.00e+00  3.26e+01   5.7*sigma
   A  43  HIS  ND1
   A  43  HIS  CG
   A  43  HIS  CD2       106.10   111.51    -5.41  1.00e+00  2.93e+01   5.4*sigma
   A  53  LEU  CA
   A  53  LEU  C
   A  54  PRO  N         116.90   124.92    -8.02  1.50e+00  2.86e+01   5.3*sigma
   A 113  LYS  CA
   A 113  LYS  C
   A 114  PRO  N         116.90   124.68    -7.78  1.50e+00  2.69e+01   5.2*sigma
   A  14  VAL  CG1
   A  14  VAL  CB
   A  14  VAL  CG2       110.80   121.30   -10.50  2.20e+00  2.28e+01   4.8*sigma
   A  52  PRO  N
   A  52  PRO  CD
   A  52  PRO  CG        103.20   110.24    -7.04  1.50e+00  2.21e+01   4.7*sigma
   A  76  SER  O
   A  76  SER  C
   A  77  ILE  N         123.00   115.58     7.42  1.60e+00  2.15e+01   4.6*sigma
   A 138  HIS  ND1
   A 138  HIS  CG
   A 138  HIS  CD2       106.10   110.72    -4.62  1.00e+00  2.13e+01   4.6*sigma
   A  21  ARG  CA
   A  21  ARG  C
   A  22  PRO  N         116.90   123.69    -6.79  1.50e+00  2.05e+01   4.5*sigma
   A  51  ILE  CA
   A  51  ILE  C
   A  52  PRO  N         116.90   123.63    -6.73  1.50e+00  2.01e+01   4.5*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   110.49    -4.39  1.00e+00  1.93e+01   4.4*sigma
   A  76  SER  CA
   A  76  SER  C
   A  77  ILE  N         116.20   124.91    -8.71  2.00e+00  1.90e+01   4.4*sigma
   A  42  GLY  C
   A  43  HIS  N
   A  43  HIS  CA        121.70   129.48    -7.78  1.80e+00  1.87e+01   4.3*sigma
   A 139  HIS  ND1
   A 139  HIS  CE1
   A 139  HIS  NE2       108.40   112.70    -4.30  1.00e+00  1.85e+01   4.3*sigma
   A  49  GLU  O
   A  49  GLU  C
   A  50  TYR  N         123.00   116.13     6.87  1.60e+00  1.84e+01   4.3*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.38    -4.28  1.00e+00  1.83e+01   4.3*sigma
   A 138  HIS  ND1
   A 138  HIS  CE1
   A 138  HIS  NE2       108.40   112.67    -4.27  1.00e+00  1.82e+01   4.3*sigma
   A  75  GLU  O
   A  75  GLU  C
   A  76  SER  N         123.00   116.19     6.81  1.60e+00  1.81e+01   4.3*sigma
   A  82  THR  C
   A  83  THR  N
   A  83  THR  CA        121.70   129.26    -7.56  1.80e+00  1.76e+01   4.2*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.29    -4.19  1.00e+00  1.76e+01   4.2*sigma
   A 136  HIS  ND1
   A 136  HIS  CG
   A 136  HIS  CD2       106.10   110.19    -4.09  1.00e+00  1.67e+01   4.1*sigma

  Min. delta:    0.003 (Z=  0.002)
  Max. delta:   12.522 (Z= 10.126)
  Mean delta:    2.446 (Z=  1.378)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  49  GLU  CA
   A  49  GLU  C
   A  50  TYR  N
   A  50  TYR  CA        180.00   152.12    27.88  5.00e+00  3.11e+01   5.6*sigma
   A  21  ARG  CA
   A  21  ARG  C
   A  22  PRO  N
   A  22  PRO  CA        180.00   153.72    26.28  5.00e+00  2.76e+01   5.3*sigma
   A  68  TYR  CD1
   A  68  TYR  CE1
   A  68  TYR  CZ
   A  68  TYR  OH        180.00   153.84    26.16  5.00e+00  2.74e+01   5.2*sigma
   A  93  LEU  CA
   A  93  LEU  C
   A  94  GLY  N
   A  94  GLY  CA        180.00   154.98    25.02  5.00e+00  2.50e+01   5.0*sigma

  Min. delta:    0.005
  Max. delta:   91.208
  Mean delta:   12.096

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.590
  Mean delta:    0.113

                       ----------Planar groups----------                       

  atoms                 rms_deltas   delta_max    residual   deviation
   A  68  TYR  CB
   A  68  TYR  CG
   A  68  TYR  CD1
   A  68  TYR  CD2
   A  68  TYR  CE1
   A  68  TYR  CE2
   A  68  TYR  CZ
   A  68  TYR  OH            0.098       0.127      190.90   6.4*sigma
   A 111  TYR  CB
   A 111  TYR  CG
   A 111  TYR  CD1
   A 111  TYR  CD2
   A 111  TYR  CE1
   A 111  TYR  CE2
   A 111  TYR  CZ
   A 111  TYR  OH            0.047       0.091       44.18   4.6*sigma

  Min. delta:    0.000
  Max. delta:    0.098
  Mean delta:    0.016

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

                       ----------Angle outliers----------                      

   A  14  VAL  HA , Angle C-CA-HA, observed: 96.993, delta from target: 12.007
   A  14  VAL  HB , Angle CG1-CB-HB, observed: 95.689, delta from target: 12.311

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.012   0.062   2241  Z= 0.641
    Angle     :  2.114  12.522   4077  Z= 0.981
    Chirality :  0.113   0.590    176
    Planarity :  0.017   0.199    326
    Dihedral  : 10.735  91.208    768
    Min Nonbonded Distance : 1.706
  
  Molprobity Statistics.
    All-atom Clashscore : 8.12
    Ramachandran Plot:
      Outliers :  4.38 %
      Allowed  :  8.03 %
      Favored  : 87.59 %
    Rotamer:
      Outliers :  1.61 %
      Allowed  :  1.61 %
      Favored  : 96.77 %
    Cbeta Deviations :  2.27 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.00 %
      Twisted Proline : 0.00 %
      Twisted General : 0.00 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -0.94 (0.69), residues: 137
    helix:  0.78 (0.60), residues: 56
    sheet:  None (None), residues: 0
    loop : -1.74 (0.72), residues: 81
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.005   0.002   HIS A 139 
   PHE   0.058   0.010   PHE A  15 
   TYR   0.465   0.049   TYR A  68 
   ARG   0.060   0.013   ARG A  21 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.005   0.002   HIS A 139 
   PHE   0.047   0.009   PHE A  15 
   TYR   0.194   0.036   TYR A  68 
   ARG   0.036   0.008   ARG A  21 

                     ----------Asn/Gln/His flips----------                     

  No backwards Asn/Gln/His sidechains found.

=================================== Summary ===================================


============================== Collecting inputs ==============================

  Ramachandran outliers =   5.84 %
                favored =  89.05 %
  Rotamer outliers      =   0.00 %
  C-beta deviations     =     3
  Clashscore            =   1.35
  RMS(bonds)            =   0.0110
  RMS(angles)           =   2.05
  MolProbity score      =   1.44

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py
  Ramachandran outliers =   4.38 %
                favored =  87.59 %
  Rotamer outliers      =   1.61 %
  C-beta deviations     =     3
  Clashscore            =   8.12
  RMS(bonds)            =   0.0120
  RMS(angles)           =   2.11
  MolProbity score      =   2.21

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py

============================== Collecting inputs ==============================


End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000 (Z=  0.001)
  Max. delta:    0.067 (Z=  3.409)
  Mean delta:    0.017 (Z=  0.887)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  78  ILE  CA
   A  78  ILE  CB
   A  78  ILE  CG1       110.40   123.12   -12.72  1.70e+00  5.60e+01   7.5*sigma
   A  97  SER  C
   A  97  SER  CA
   A  97  SER  CB        110.10    99.02    11.08  1.90e+00  3.40e+01   5.8*sigma
   A  43  HIS  C
   A  43  HIS  CA
   A  43  HIS  CB        110.10    99.33    10.77  1.90e+00  3.22e+01   5.7*sigma
   A 113  LYS  CA
   A 113  LYS  C
   A 114  PRO  N         116.90   125.31    -8.41  1.50e+00  3.14e+01   5.6*sigma
   A 101  LYS  CA
   A 101  LYS  C
   A 102  PRO  N         116.90   124.97    -8.07  1.50e+00  2.90e+01   5.4*sigma
   A  97  SER  N
   A  97  SER  CA
   A  97  SER  CB        110.50   119.08    -8.58  1.70e+00  2.55e+01   5.0*sigma
   A 103  ASP  CA
   A 103  ASP  CB
   A 103  ASP  CG        112.60   117.57    -4.97  1.00e+00  2.47e+01   5.0*sigma
   A  77  ILE  C
   A  77  ILE  CA
   A  77  ILE  CB        111.60   101.92     9.68  2.00e+00  2.34e+01   4.8*sigma
   A  80  GLY  C
   A  81  TYR  N
   A  81  TYR  CA        121.70   113.12     8.58  1.80e+00  2.27e+01   4.8*sigma
   A  43  HIS  ND1
   A  43  HIS  CG
   A  43  HIS  CD2       106.10   110.84    -4.74  1.00e+00  2.24e+01   4.7*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.72    -4.62  1.00e+00  2.14e+01   4.6*sigma
   A  53  LEU  CA
   A  53  LEU  C
   A  54  PRO  N         116.90   123.76    -6.86  1.50e+00  2.09e+01   4.6*sigma
   A  81  TYR  N
   A  81  TYR  CA
   A  81  TYR  C         111.00    98.22    12.78  2.80e+00  2.08e+01   4.6*sigma
   A 134  HIS  ND1
   A 134  HIS  CG
   A 134  HIS  CD2       106.10   110.64    -4.54  1.00e+00  2.06e+01   4.5*sigma
   A  76  SER  C
   A  77  ILE  N
   A  77  ILE  CA        121.70   129.60    -7.90  1.80e+00  1.93e+01   4.4*sigma
   A  98  SER  CA
   A  98  SER  CB
   A  98  SER  OG        111.10   119.84    -8.74  2.00e+00  1.91e+01   4.4*sigma
   A 136  HIS  ND1
   A 136  HIS  CG
   A 136  HIS  CD2       106.10   110.44    -4.34  1.00e+00  1.89e+01   4.3*sigma
   A 138  HIS  ND1
   A 138  HIS  CG
   A 138  HIS  CD2       106.10   110.37    -4.27  1.00e+00  1.83e+01   4.3*sigma
   A  44  ASP  CA
   A  44  ASP  CB
   A  44  ASP  CG        112.60   108.39     4.21  1.00e+00  1.77e+01   4.2*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.30    -4.20  1.00e+00  1.77e+01   4.2*sigma
   A  71  ILE  CA
   A  71  ILE  CB
   A  71  ILE  CG1       110.40   117.52    -7.12  1.70e+00  1.75e+01   4.2*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   110.20    -4.10  1.00e+00  1.68e+01   4.1*sigma
   A  78  ILE  CA
   A  78  ILE  CB
   A  78  ILE  CG2       110.50   103.55     6.95  1.70e+00  1.67e+01   4.1*sigma
   A  82  THR  N
   A  82  THR  CA
   A  82  THR  CB        111.50   118.45    -6.95  1.70e+00  1.67e+01   4.1*sigma
   A  21  ARG  CA
   A  21  ARG  C
   A  22  PRO  N         116.90   122.95    -6.05  1.50e+00  1.63e+01   4.0*sigma

  Min. delta:    0.001 (Z=  0.001)
  Max. delta:   12.778 (Z=  7.485)
  Mean delta:    2.381 (Z=  1.297)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 127  ARG  CA
   A 127  ARG  C
   A 128  MET  N
   A 128  MET  CA        180.00   147.74    32.26  5.00e+00  4.16e+01   6.5*sigma
   A 118  ASP  CA
   A 118  ASP  C
   A 119  LEU  N
   A 119  LEU  CA        180.00   155.06    24.94  5.00e+00  2.49e+01   5.0*sigma
   A  77  ILE  CA
   A  77  ILE  C
   A  78  ILE  N
   A  78  ILE  CA        180.00   158.57    21.43  5.00e+00  1.84e+01   4.3*sigma
   A 128  MET  CA
   A 128  MET  C
   A 129  ARG  N
   A 129  ARG  CA        180.00   158.69    21.31  5.00e+00  1.82e+01   4.3*sigma

  Min. delta:    0.026
  Max. delta:   73.759
  Mean delta:   11.990

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.001
  Max. delta:    0.339
  Mean delta:    0.109

                       ----------Planar groups----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.105
  Mean delta:    0.014

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

                       ----------Angle outliers----------                      

   A  78  ILE  HB , Angle CG2-CB-HB, observed: 121.742, delta from target: -12.742
   A  97  SER  HA , Angle C-CA-HA, observed: 121.780, delta from target: -12.780

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.012   0.067   2241  Z= 0.631
    Angle     :  2.099  12.780   4077  Z= 0.942
    Chirality :  0.109   0.339    176
    Planarity :  0.011   0.105    326
    Dihedral  : 10.396  73.759    768
    Min Nonbonded Distance : 1.682
  
  Molprobity Statistics.
    All-atom Clashscore : 9.02
    Ramachandran Plot:
      Outliers :  5.11 %
      Allowed  : 10.22 %
      Favored  : 84.67 %
    Rotamer:
      Outliers :  0.00 %
      Allowed  :  2.42 %
      Favored  : 97.58 %
    Cbeta Deviations :  3.03 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.00 %
      Twisted Proline : 0.00 %
      Twisted General : 0.76 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -0.90 (0.74), residues: 137
    helix:  1.62 (0.65), residues: 55
    sheet: -2.19 (1.24), residues: 10
    loop : -2.28 (0.79), residues: 72
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.005   0.002   HIS A  43 
   PHE   0.043   0.009   PHE A  45 
   TYR   0.171   0.022   TYR A  68 
   ARG   0.022   0.005   ARG A  58 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.005   0.002   HIS A  43 
   PHE   0.029   0.008   PHE A  45 
   TYR   0.101   0.019   TYR A  81 
   ARG   0.013   0.003   ARG A  58 

                     ----------Asn/Gln/His flips----------                     

   A  66  GLN

=================================== Summary ===================================


============================== Collecting inputs ==============================


============================== Collecting inputs ==============================

  Ramachandran outliers =   5.11 %
                favored =  84.67 %
  Rotamer outliers      =   0.00 %
  C-beta deviations     =     4
  Clashscore            =   9.02
  RMS(bonds)            =   0.0119
  RMS(angles)           =   2.10
  MolProbity score      =   2.15

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py
Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  


  Symmetric amino acids flipped
    Residue "A GLU    8": "OE1" <-> "OE2"
    Residue "A PHE   15": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   24": "OE1" <-> "OE2"
    Residue "A TYR   50": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU   55": "OE1" <-> "OE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A TYR   81": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU   84": "OE1" <-> "OE2"
    Residue "A TYR   89": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR   91": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""

End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000 (Z=  0.000)
  Max. delta:    0.098 (Z=  3.623)
  Mean delta:    0.016 (Z=  0.834)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 113  LYS  CA
   A 113  LYS  C
   A 114  PRO  N         116.90   128.40   -11.50  1.50e+00  5.88e+01   7.7*sigma
   A 138  HIS  CA
   A 138  HIS  CB
   A 138  HIS  CG        113.80   120.65    -6.85  1.00e+00  4.69e+01   6.8*sigma
   A  14  VAL  C
   A  14  VAL  CA
   A  14  VAL  CB        111.40   100.19    11.21  1.90e+00  3.48e+01   5.9*sigma
   A  14  VAL  CG1
   A  14  VAL  CB
   A  14  VAL  CG2       110.80    98.38    12.42  2.20e+00  3.19e+01   5.6*sigma
   A  14  VAL  N
   A  14  VAL  CA
   A  14  VAL  CB        111.50   102.37     9.13  1.70e+00  2.89e+01   5.4*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   111.06    -4.96  1.00e+00  2.46e+01   5.0*sigma
   A  43  HIS  ND1
   A  43  HIS  CG
   A  43  HIS  CD2       106.10   110.42    -4.32  1.00e+00  1.87e+01   4.3*sigma
   A  17  SER  C
   A  17  SER  CA
   A  17  SER  CB        110.10   101.97     8.13  1.90e+00  1.83e+01   4.3*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   110.37    -4.27  1.00e+00  1.82e+01   4.3*sigma
   A 138  HIS  ND1
   A 138  HIS  CG
   A 138  HIS  CD2       106.10   110.37    -4.27  1.00e+00  1.82e+01   4.3*sigma
   A 101  LYS  CA
   A 101  LYS  C
   A 102  PRO  N         116.90   123.30    -6.40  1.50e+00  1.82e+01   4.3*sigma
   A 113  LYS  O
   A 113  LYS  C
   A 114  PRO  N         123.00   116.20     6.80  1.60e+00  1.81e+01   4.3*sigma
   A 134  HIS  ND1
   A 134  HIS  CG
   A 134  HIS  CD2       106.10   110.28    -4.18  1.00e+00  1.75e+01   4.2*sigma
   A   5  THR  CA
   A   5  THR  C
   A   6  PRO  N         116.90   123.13    -6.23  1.50e+00  1.72e+01   4.2*sigma
   A 136  HIS  ND1
   A 136  HIS  CG
   A 136  HIS  CD2       106.10   110.15    -4.05  1.00e+00  1.64e+01   4.0*sigma

  Min. delta:    0.001 (Z=  0.001)
  Max. delta:   12.418 (Z=  7.666)
  Mean delta:    2.312 (Z=  1.270)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  76  SER  CA
   A  76  SER  C
   A  77  ILE  N
   A  77  ILE  CA        180.00   143.45    36.55  5.00e+00  5.34e+01   7.3*sigma
   A 138  HIS  CA
   A 138  HIS  C
   A 139  HIS  N
   A 139  HIS  CA        180.00   144.62    35.38  5.00e+00  5.01e+01   7.1*sigma
   A  12  TYR  CD1
   A  12  TYR  CE1
   A  12  TYR  CZ
   A  12  TYR  OH        180.00   154.41    25.59  5.00e+00  2.62e+01   5.1*sigma
   A  81  TYR  CA
   A  81  TYR  C
   A  82  THR  N
   A  82  THR  CA        180.00   156.37    23.63  5.00e+00  2.23e+01   4.7*sigma
   A  75  GLU  CA
   A  75  GLU  C
   A  76  SER  N
   A  76  SER  CA        180.00   158.72    21.28  5.00e+00  1.81e+01   4.3*sigma
   A  79  LYS  CA
   A  79  LYS  C
   A  80  GLY  N
   A  80  GLY  CA        180.00   159.23    20.77  5.00e+00  1.73e+01   4.2*sigma
   A  21  ARG  CA
   A  21  ARG  C
   A  22  PRO  N
   A  22  PRO  CA        180.00   159.89    20.11  5.00e+00  1.62e+01   4.0*sigma

  Min. delta:    0.006
  Max. delta:   80.553
  Mean delta:   10.594

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.001
  Max. delta:    0.652
  Mean delta:    0.133

                       ----------Planar groups----------                       

  atoms                 rms_deltas   delta_max    residual   deviation
   A  12  TYR  CB
   A  12  TYR  CG
   A  12  TYR  CD1
   A  12  TYR  CD2
   A  12  TYR  CE1
   A  12  TYR  CE2
   A  12  TYR  CZ
   A  12  TYR  OH            0.201       0.387      808.30  19.4*sigma

  Min. delta:    0.000
  Max. delta:    0.201
  Mean delta:    0.019

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

                       ----------Angle outliers----------                      

   A  14  VAL  HA , Angle CB-CA-HA, observed: 121.820, delta from target: -12.820
   A  76  SER  HA , Angle N-CA-HA, observed: 96.895, delta from target: 13.105
   A 113  LYS  HA , Angle N-CA-HA, observed: 96.848, delta from target: 13.152

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.012   0.098   2241  Z= 0.594
    Angle     :  2.080  13.152   4077  Z= 0.930
    Chirality :  0.133   0.652    176
    Planarity :  0.015   0.205    326
    Dihedral  :  9.493  80.553    768
    Min Nonbonded Distance : 1.740
  
  Molprobity Statistics.
    All-atom Clashscore : 10.37
    Ramachandran Plot:
      Outliers :  5.11 %
      Allowed  : 12.41 %
      Favored  : 82.48 %
    Rotamer:
      Outliers :  0.81 %
      Allowed  :  0.00 %
      Favored  : 99.19 %
    Cbeta Deviations :  3.03 %
    Peptide Plane:
      Cis-proline     : 14.29 %
      Cis-general     : 0.00 %
      Twisted Proline : 0.00 %
      Twisted General : 1.53 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -1.90 (0.68), residues: 137
    helix:  0.24 (0.56), residues: 69
    sheet:  None (None), residues: 0
    loop : -3.03 (0.73), residues: 68
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.005   0.002   HIS A 135 
   PHE   0.029   0.011   PHE A  15 
   TYR   0.507   0.032   TYR A  12 
   ARG   0.032   0.005   ARG A  58 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.005   0.002   HIS A 135 
   PHE   0.023   0.008   PHE A  15 
   TYR   0.387   0.032   TYR A  12 
   ARG   0.017   0.003   ARG A  58 

                     ----------Asn/Gln/His flips----------                     

   A  43  HIS

=================================== Summary ===================================

  Ramachandran outliers =   5.11 %
                favored =  82.48 %
  Rotamer outliers      =   0.81 %
  C-beta deviations     =     4
  Clashscore            =  10.37
  RMS(bonds)            =   0.0115
  RMS(angles)           =   2.08
  MolProbity score      =   2.24

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py
Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  


End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000 (Z=  0.000)
  Max. delta:    0.063 (Z=  3.492)
  Mean delta:    0.016 (Z=  0.845)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 114  PRO  N
   A 114  PRO  CA
   A 114  PRO  C         112.10   127.86   -15.76  2.50e+00  3.98e+01   6.3*sigma
   A  77  ILE  CA
   A  77  ILE  CB
   A  77  ILE  CG1       110.40   120.52   -10.12  1.70e+00  3.54e+01   6.0*sigma
   A  30  ILE  CA
   A  30  ILE  CB
   A  30  ILE  CG1       110.40   120.21    -9.81  1.70e+00  3.33e+01   5.8*sigma
   A 101  LYS  CA
   A 101  LYS  C
   A 102  PRO  N         116.90   125.43    -8.53  1.50e+00  3.23e+01   5.7*sigma
   A  74  ASP  N
   A  74  ASP  CA
   A  74  ASP  C         111.00    95.46    15.54  2.80e+00  3.08e+01   5.5*sigma
   A  15  PHE  CA
   A  15  PHE  CB
   A  15  PHE  CG        113.80   108.36     5.44  1.00e+00  2.96e+01   5.4*sigma
   A   2  LEU  CB
   A   2  LEU  CG
   A   2  LEU  CD1       110.70   124.70   -14.00  3.00e+00  2.18e+01   4.7*sigma
   A  66  GLN  CB
   A  66  GLN  CG
   A  66  GLN  CD        112.60   120.53    -7.93  1.70e+00  2.18e+01   4.7*sigma
   A 134  HIS  ND1
   A 134  HIS  CG
   A 134  HIS  CD2       106.10   110.65    -4.55  1.00e+00  2.07e+01   4.6*sigma
   A 136  HIS  ND1
   A 136  HIS  CG
   A 136  HIS  CD2       106.10   110.41    -4.31  1.00e+00  1.86e+01   4.3*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.40    -4.30  1.00e+00  1.85e+01   4.3*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.34    -4.24  1.00e+00  1.79e+01   4.2*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   110.27    -4.17  1.00e+00  1.74e+01   4.2*sigma
   A 113  LYS  C
   A 113  LYS  CA
   A 113  LYS  CB        110.10   117.89    -7.79  1.90e+00  1.68e+01   4.1*sigma
   A  97  SER  N
   A  97  SER  CA
   A  97  SER  CB        110.50   117.37    -6.87  1.70e+00  1.63e+01   4.0*sigma

  Min. delta:    0.001 (Z=  0.000)
  Max. delta:   15.762 (Z=  6.305)
  Mean delta:    2.264 (Z=  1.239)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 120  GLU  CA
   A 120  GLU  C
   A 121  GLY  N
   A 121  GLY  CA        180.00   144.17    35.83  5.00e+00  5.14e+01   7.2*sigma
   A 113  LYS  CA
   A 113  LYS  C
   A 114  PRO  N
   A 114  PRO  CA        180.00  -155.66   -24.34  5.00e+00  2.37e+01   4.9*sigma
   A 121  GLY  CA
   A 121  GLY  C
   A 122  ILE  N
   A 122  ILE  CA        180.00   156.20    23.80  5.00e+00  2.27e+01   4.8*sigma
   A  99  LEU  CA
   A  99  LEU  C
   A 100  GLN  N
   A 100  GLN  CA        180.00   157.34    22.66  5.00e+00  2.05e+01   4.5*sigma
   A 138  HIS  CA
   A 138  HIS  C
   A 139  HIS  N
   A 139  HIS  CA        180.00   158.57    21.43  5.00e+00  1.84e+01   4.3*sigma
   A 117  PRO  CA
   A 117  PRO  C
   A 118  ASP  N
   A 118  ASP  CA        180.00   158.77    21.23  5.00e+00  1.80e+01   4.2*sigma
   A 118  ASP  CA
   A 118  ASP  C
   A 119  LEU  N
   A 119  LEU  CA        180.00   159.29    20.71  5.00e+00  1.72e+01   4.1*sigma
   A 131  ILE  CA
   A 131  ILE  C
   A 132  LEU  N
   A 132  LEU  CA        180.00   159.78    20.22  5.00e+00  1.64e+01   4.0*sigma

  Min. delta:    0.011
  Max. delta:   64.448
  Mean delta:   10.547

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.001
  Max. delta:    0.596
  Mean delta:    0.120

                       ----------Planar groups----------                       

  atoms                 rms_deltas   delta_max    residual   deviation
   A 113  LYS  C
   A 114  PRO  N
   A 114  PRO  CA
   A 114  PRO  CD            0.142       0.246       32.48   4.9*sigma

  Min. delta:    0.000
  Max. delta:    0.142
  Mean delta:    0.016

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

                       ----------Angle outliers----------                      

   A 114  PRO  HA , Angle CB-CA-HA, observed: 123.118, delta from target: -14.118
   A   2  LEU  HG , Angle CB-CG-HG, observed: 94.692, delta from target: 14.308
   A 114  PRO  HA , Angle C-CA-HA, observed: 93.954, delta from target: 15.046

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.011   0.063   2241  Z= 0.602
    Angle     :  2.048  15.762   4077  Z= 0.911
    Chirality :  0.120   0.596    176
    Planarity :  0.013   0.142    326
    Dihedral  :  9.385  87.099    768
    Min Nonbonded Distance : 1.679
  
  Molprobity Statistics.
    All-atom Clashscore : 4.51
    Ramachandran Plot:
      Outliers :  5.11 %
      Allowed  :  6.57 %
      Favored  : 88.32 %
    Rotamer:
      Outliers :  0.81 %
      Allowed  :  0.81 %
      Favored  : 98.39 %
    Cbeta Deviations :  1.52 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.00 %
      Twisted Proline : 0.00 %
      Twisted General : 0.76 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -1.28 (0.68), residues: 137
    helix:  0.68 (0.65), residues: 59
    sheet:  None (None), residues: 0
    loop : -2.20 (0.65), residues: 78
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.005   0.001   HIS A 139 
   PHE   0.076   0.017   PHE A  67 
   TYR   0.164   0.025   TYR A  68 
   ARG   0.016   0.004   ARG A  21 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.005   0.001   HIS A 139 
   PHE   0.047   0.015   PHE A  67 
   TYR   0.132   0.024   TYR A  68 
   ARG   0.009   0.002   ARG A  21 

                     ----------Asn/Gln/His flips----------                     

  No backwards Asn/Gln/His sidechains found.

=================================== Summary ===================================

Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  

  Ramachandran outliers =   5.11 %
                favored =  88.32 %
  Rotamer outliers      =   0.81 %
  C-beta deviations     =     2
  Clashscore            =   4.51
  RMS(bonds)            =   0.0113
  RMS(angles)           =   2.05
  MolProbity score      =   1.82

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py
Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  

Symmetry information was not found, putting molecule in P1 box.

                   ----------Processing PDB file(s)----------                  

        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'PTRANS': 7, 'TRANS': 131}

End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000 (Z=  0.001)
  Max. delta:    0.072 (Z=  3.756)
  Mean delta:    0.017 (Z=  0.871)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  51  ILE  CA
   A  51  ILE  C
   A  52  PRO  N         116.90   126.94   -10.04  1.50e+00  4.48e+01   6.7*sigma
   A 113  LYS  CA
   A 113  LYS  C
   A 114  PRO  N         116.90   124.52    -7.62  1.50e+00  2.58e+01   5.1*sigma
   A 139  HIS  N
   A 139  HIS  CA
   A 139  HIS  CB        110.50   118.57    -8.07  1.70e+00  2.25e+01   4.7*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   110.65    -4.55  1.00e+00  2.07e+01   4.6*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.55    -4.45  1.00e+00  1.98e+01   4.4*sigma
   A 138  HIS  ND1
   A 138  HIS  CG
   A 138  HIS  CD2       106.10   110.46    -4.36  1.00e+00  1.91e+01   4.4*sigma
   A 136  HIS  ND1
   A 136  HIS  CG
   A 136  HIS  CD2       106.10   110.39    -4.29  1.00e+00  1.84e+01   4.3*sigma
   A 117  PRO  C
   A 118  ASP  N
   A 118  ASP  CA        121.70   129.34    -7.64  1.80e+00  1.80e+01   4.2*sigma
   A  52  PRO  CA
   A  52  PRO  C
   A  53  LEU  N         116.20   124.69    -8.49  2.00e+00  1.80e+01   4.2*sigma
   A  44  ASP  C
   A  44  ASP  CA
   A  44  ASP  CB        110.10   118.15    -8.05  1.90e+00  1.80e+01   4.2*sigma
   A  76  SER  C
   A  77  ILE  N
   A  77  ILE  CA        121.70   129.19    -7.49  1.80e+00  1.73e+01   4.2*sigma
   A  21  ARG  CA
   A  21  ARG  C
   A  22  PRO  N         116.90   123.13    -6.23  1.50e+00  1.73e+01   4.2*sigma
   A 134  HIS  ND1
   A 134  HIS  CG
   A 134  HIS  CD2       106.10   110.15    -4.05  1.00e+00  1.64e+01   4.1*sigma
   A  43  HIS  ND1
   A  43  HIS  CG
   A  43  HIS  CD2       106.10   110.15    -4.05  1.00e+00  1.64e+01   4.0*sigma

  Min. delta:    0.002 (Z=  0.001)
  Max. delta:   10.037 (Z=  6.691)
  Mean delta:    2.261 (Z=  1.254)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 138  HIS  CA
   A 138  HIS  C
   A 139  HIS  N
   A 139  HIS  CA        180.00   140.65    39.35  5.00e+00  6.19e+01   7.9*sigma
   A 137  HIS  CA
   A 137  HIS  C
   A 138  HIS  N
   A 138  HIS  CA        180.00   151.37    28.63  5.00e+00  3.28e+01   5.7*sigma
   A 119  LEU  CA
   A 119  LEU  C
   A 120  GLU  N
   A 120  GLU  CA        180.00   153.83    26.17  5.00e+00  2.74e+01   5.2*sigma
   A  93  LEU  CA
   A  93  LEU  C
   A  94  GLY  N
   A  94  GLY  CA        180.00   159.39    20.61  5.00e+00  1.70e+01   4.1*sigma

  Min. delta:    0.019
  Max. delta:   70.359
  Mean delta:   10.568

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.525
  Mean delta:    0.118

                       ----------Planar groups----------                       

  atoms                 rms_deltas   delta_max    residual   deviation
   A  50  TYR  CB
   A  50  TYR  CG
   A  50  TYR  CD1
   A  50  TYR  CD2
   A  50  TYR  CE1
   A  50  TYR  CE2
   A  50  TYR  CZ
   A  50  TYR  OH            0.166       0.159      552.42   7.9*sigma
   A 105  TYR  CB
   A 105  TYR  CG
   A 105  TYR  CD1
   A 105  TYR  CD2
   A 105  TYR  CE1
   A 105  TYR  CE2
   A 105  TYR  CZ
   A 105  TYR  OH            0.046       0.088       43.08   4.4*sigma
   A  68  TYR  CB
   A  68  TYR  CG
   A  68  TYR  CD1
   A  68  TYR  CD2
   A  68  TYR  CE1
   A  68  TYR  CE2
   A  68  TYR  CZ
   A  68  TYR  OH            0.044       0.084       39.43   4.2*sigma

  Min. delta:    0.000
  Max. delta:    0.166
  Mean delta:    0.018

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

                       ----------Angle outliers----------                      

   A 138  HIS  HA , Angle N-CA-HA, observed: 96.049, delta from target: 13.951

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.012   0.072   2241  Z= 0.620
    Angle     :  2.034  13.951   4077  Z= 0.916
    Chirality :  0.118   0.525    176
    Planarity :  0.014   0.163    326
    Dihedral  : 10.004  70.359    768
    Min Nonbonded Distance : 1.829
  
  Molprobity Statistics.
    All-atom Clashscore : 2.26
    Ramachandran Plot:
      Outliers :  3.65 %
      Allowed  : 12.41 %
      Favored  : 83.94 %
    Rotamer:
      Outliers :  0.81 %
      Allowed  :  0.81 %
      Favored  : 98.39 %
    Cbeta Deviations :  2.27 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.00 %
      Twisted Proline : 0.00 %
      Twisted General : 0.76 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -1.57 (0.76), residues: 137
    helix:  1.09 (0.62), residues: 65
    sheet:  None (None), residues: 0
    loop : -3.32 (0.78), residues: 72
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.003   0.001   HIS A  43 
   PHE   0.088   0.017   PHE A  45 
   TYR   0.369   0.035   TYR A  50 
   ARG   0.045   0.007   ARG A  58 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.003   0.001   HIS A  43 
   PHE   0.059   0.017   PHE A  45 
   TYR   0.287   0.038   TYR A  50 
   ARG   0.003   0.001   ARG A 127 

                     ----------Asn/Gln/His flips----------                     

  No backwards Asn/Gln/His sidechains found.

=================================== Summary ===================================


End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000 (Z=  0.001)
  Max. delta:    0.084 (Z=  3.650)
  Mean delta:    0.017 (Z=  0.919)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  45  PHE  CA
   A  45  PHE  CB
   A  45  PHE  CG        113.80   101.95    11.85  1.00e+00  1.40e+02  11.8*sigma
   A 116  ASP  CA
   A 116  ASP  C
   A 117  PRO  N         116.90   128.24   -11.34  1.50e+00  5.72e+01   7.6*sigma
   A  45  PHE  N
   A  45  PHE  CA
   A  45  PHE  CB        110.50    97.77    12.73  1.70e+00  5.61e+01   7.5*sigma
   A 113  LYS  CA
   A 113  LYS  C
   A 114  PRO  N         116.90   127.03   -10.13  1.50e+00  4.56e+01   6.8*sigma
   A  15  PHE  C
   A  15  PHE  CA
   A  15  PHE  CB        110.10    98.03    12.07  1.90e+00  4.04e+01   6.4*sigma
   A  43  HIS  CA
   A  43  HIS  CB
   A  43  HIS  CG        113.80   119.15    -5.35  1.00e+00  2.86e+01   5.3*sigma
   A  47  ASP  N
   A  47  ASP  CA
   A  47  ASP  CB        110.50   119.24    -8.74  1.70e+00  2.64e+01   5.1*sigma
   A  47  ASP  CA
   A  47  ASP  CB
   A  47  ASP  CG        112.60   117.66    -5.06  1.00e+00  2.56e+01   5.1*sigma
   A  12  TYR  CA
   A  12  TYR  C
   A  12  TYR  O         120.80   112.54     8.26  1.70e+00  2.36e+01   4.9*sigma
   A  76  SER  C
   A  77  ILE  N
   A  77  ILE  CA        121.70   130.17    -8.47  1.80e+00  2.21e+01   4.7*sigma
   A 116  ASP  O
   A 116  ASP  C
   A 117  PRO  N         123.00   115.63     7.37  1.60e+00  2.12e+01   4.6*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   110.68    -4.58  1.00e+00  2.10e+01   4.6*sigma
   A  15  PHE  N
   A  15  PHE  CA
   A  15  PHE  C         111.00   123.71   -12.71  2.80e+00  2.06e+01   4.5*sigma
   A  12  TYR  CA
   A  12  TYR  C
   A  13  SER  N         116.20   125.22    -9.02  2.00e+00  2.03e+01   4.5*sigma
   A 124  ALA  C
   A 125  LYS  N
   A 125  LYS  CA        121.70   129.70    -8.00  1.80e+00  1.97e+01   4.4*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.52    -4.42  1.00e+00  1.96e+01   4.4*sigma
   A  10  LYS  C
   A  10  LYS  CA
   A  10  LYS  CB        110.10   101.72     8.38  1.90e+00  1.95e+01   4.4*sigma
   A 134  HIS  ND1
   A 134  HIS  CG
   A 134  HIS  CD2       106.10   110.49    -4.39  1.00e+00  1.93e+01   4.4*sigma
   A  77  ILE  CA
   A  77  ILE  CB
   A  77  ILE  CG2       110.50   117.95    -7.45  1.70e+00  1.92e+01   4.4*sigma
   A  56  THR  N
   A  56  THR  CA
   A  56  THR  CB        111.50   104.10     7.40  1.70e+00  1.90e+01   4.4*sigma
   A  46  SER  C
   A  47  ASP  N
   A  47  ASP  CA        121.70   129.49    -7.79  1.80e+00  1.87e+01   4.3*sigma
   A 136  HIS  ND1
   A 136  HIS  CG
   A 136  HIS  CD2       106.10   110.42    -4.32  1.00e+00  1.86e+01   4.3*sigma
   A  15  PHE  N
   A  15  PHE  CA
   A  15  PHE  CB        110.50   103.16     7.34  1.70e+00  1.86e+01   4.3*sigma
   A  10  LYS  N
   A  10  LYS  CA
   A  10  LYS  CB        110.50   117.80    -7.30  1.70e+00  1.84e+01   4.3*sigma
   A 101  LYS  CA
   A 101  LYS  C
   A 102  PRO  N         116.90   123.23    -6.33  1.50e+00  1.78e+01   4.2*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.28    -4.18  1.00e+00  1.75e+01   4.2*sigma
   A  14  VAL  CA
   A  14  VAL  CB
   A  14  VAL  CG1       110.40   117.47    -7.07  1.70e+00  1.73e+01   4.2*sigma
   A  43  HIS  C
   A  44  ASP  N
   A  44  ASP  CA        121.70   129.11    -7.41  1.80e+00  1.70e+01   4.1*sigma
   A 139  HIS  ND1
   A 139  HIS  CE1
   A 139  HIS  NE2       108.40   112.48    -4.08  1.00e+00  1.66e+01   4.1*sigma

  Min. delta:    0.009 (Z=  0.006)
  Max. delta:   12.733 (Z= 11.846)
  Mean delta:    2.516 (Z=  1.420)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  80  GLY  CA
   A  80  GLY  C
   A  81  TYR  N
   A  81  TYR  CA        180.00   153.36    26.64  5.00e+00  2.84e+01   5.3*sigma
   A  21  ARG  CA
   A  21  ARG  C
   A  22  PRO  N
   A  22  PRO  CA        180.00   159.12    20.88  5.00e+00  1.74e+01   4.2*sigma

  Min. delta:    0.078
  Max. delta:   85.155
  Mean delta:   10.922

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.558
  Mean delta:    0.125

                       ----------Planar groups----------                       

  atoms                 rms_deltas   delta_max    residual   deviation
   A  15  PHE  CB
   A  15  PHE  CG
   A  15  PHE  CD1
   A  15  PHE  CD2
   A  15  PHE  CE1
   A  15  PHE  CE2
   A  15  PHE  CZ            0.208       0.303      758.47  15.2*sigma
   A 111  TYR  CB
   A 111  TYR  CG
   A 111  TYR  CD1
   A 111  TYR  CD2
   A 111  TYR  CE1
   A 111  TYR  CE2
   A 111  TYR  CZ
   A 111  TYR  OH            0.100       0.173      201.36   8.6*sigma
   A  45  PHE  CB
   A  45  PHE  CG
   A  45  PHE  CD1
   A  45  PHE  CD2
   A  45  PHE  CE1
   A  45  PHE  CE2
   A  45  PHE  CZ            0.119       0.169      247.92   8.4*sigma
   A  89  TYR  CB
   A  89  TYR  CG
   A  89  TYR  CD1
   A  89  TYR  CD2
   A  89  TYR  CE1
   A  89  TYR  CE2
   A  89  TYR  CZ
   A  89  TYR  OH            0.062       0.085       78.12   4.2*sigma

  Min. delta:    0.000
  Max. delta:    0.208
  Mean delta:    0.023

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

                       ----------Angle outliers----------                      

   A  14  VAL  HA , Angle N-CA-HA, observed: 97.540, delta from target: 12.460
   A  10  LYS  HA , Angle N-CA-HA, observed: 94.937, delta from target: 15.063
   A  15  PHE  HA , Angle CB-CA-HA, observed: 126.090, delta from target: -17.090

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.012   0.084   2241  Z= 0.654
    Angle     :  2.190  17.090   4077  Z= 1.014
    Chirality :  0.125   0.558    176
    Planarity :  0.023   0.279    326
    Dihedral  : 10.345  85.155    768
    Min Nonbonded Distance : 1.712
  
  Molprobity Statistics.
    All-atom Clashscore : 5.41
    Ramachandran Plot:
      Outliers :  6.57 %
      Allowed  : 14.60 %
      Favored  : 78.83 %
    Rotamer:
      Outliers :  0.00 %
      Allowed  :  1.61 %
      Favored  : 98.39 %
    Cbeta Deviations :  4.55 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.00 %
      Twisted Proline : 0.00 %
      Twisted General : 0.00 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -0.78 (0.78), residues: 137
    helix:  1.89 (0.64), residues: 58
    sheet:  None (None), residues: 0
    loop : -2.60 (0.79), residues: 79
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.006   0.002   HIS A 139 
   PHE   0.551   0.118   PHE A  15 
   TYR   0.294   0.042   TYR A 111 
   ARG   0.020   0.005   ARG A 129 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.006   0.002   HIS A 139 
   PHE   0.303   0.102   PHE A  15 
   TYR   0.173   0.034   TYR A 111 
   ARG   0.009   0.001   ARG A  58 

                     ----------Asn/Gln/His flips----------                     

  No backwards Asn/Gln/His sidechains found.

=================================== Summary ===================================

  Ramachandran outliers =   3.65 %
                favored =  83.94 %
  Rotamer outliers      =   0.81 %
  C-beta deviations     =     3
  Clashscore            =   2.26
  RMS(bonds)            =   0.0118
  RMS(angles)           =   2.03
  MolProbity score      =   1.68

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py

  Symmetric amino acids flipped
    Residue "A TYR   12": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A PHE   15": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   24": "OE1" <-> "OE2"
    Residue "A GLU   32": "OE1" <-> "OE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A TYR   68": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU   75": "OE1" <-> "OE2"
    Residue "A GLU   84": "OE1" <-> "OE2"
    Residue "A TYR   89": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR   91": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ASP  116": "OD1" <-> "OD2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""

End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000 (Z=  0.002)
  Max. delta:    0.052 (Z=  3.714)
  Mean delta:    0.015 (Z=  0.828)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  55  GLU  N
   A  55  GLU  CA
   A  55  GLU  CB        110.50   120.11    -9.61  1.70e+00  3.20e+01   5.7*sigma
   A 124  ALA  N
   A 124  ALA  CA
   A 124  ALA  CB        110.40   117.94    -7.54  1.50e+00  2.53e+01   5.0*sigma
   A  92  THR  CA
   A  92  THR  CB
   A  92  THR  CG2       110.50   118.54    -8.04  1.70e+00  2.24e+01   4.7*sigma
   A 138  HIS  ND1
   A 138  HIS  CG
   A 138  HIS  CD2       106.10   110.64    -4.54  1.00e+00  2.06e+01   4.5*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   110.56    -4.46  1.00e+00  1.99e+01   4.5*sigma
   A 134  HIS  ND1
   A 134  HIS  CG
   A 134  HIS  CD2       106.10   110.55    -4.45  1.00e+00  1.98e+01   4.4*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.49    -4.39  1.00e+00  1.92e+01   4.4*sigma
   A 113  LYS  CA
   A 113  LYS  C
   A 114  PRO  N         116.90   123.44    -6.54  1.50e+00  1.90e+01   4.4*sigma
   A  43  HIS  ND1
   A  43  HIS  CG
   A  43  HIS  CD2       106.10   110.43    -4.33  1.00e+00  1.88e+01   4.3*sigma
   A  43  HIS  C
   A  43  HIS  CA
   A  43  HIS  CB        110.10   101.91     8.19  1.90e+00  1.86e+01   4.3*sigma
   A  55  GLU  C
   A  56  THR  N
   A  56  THR  CA        121.70   129.44    -7.74  1.80e+00  1.85e+01   4.3*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.38    -4.28  1.00e+00  1.84e+01   4.3*sigma
   A  98  SER  N
   A  98  SER  CA
   A  98  SER  CB        110.50   117.76    -7.26  1.70e+00  1.82e+01   4.3*sigma
   A  21  ARG  CA
   A  21  ARG  C
   A  22  PRO  N         116.90   123.28    -6.38  1.50e+00  1.81e+01   4.3*sigma
   A 136  HIS  ND1
   A 136  HIS  CG
   A 136  HIS  CD2       106.10   110.22    -4.12  1.00e+00  1.70e+01   4.1*sigma

  Min. delta:    0.003 (Z=  0.002)
  Max. delta:    9.657 (Z=  5.654)
  Mean delta:    2.133 (Z=  1.200)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 122  ILE  CA
   A 122  ILE  C
   A 123  GLU  N
   A 123  GLU  CA        180.00   152.53    27.47  5.00e+00  3.02e+01   5.5*sigma
   A 121  GLY  CA
   A 121  GLY  C
   A 122  ILE  N
   A 122  ILE  CA        180.00   152.81    27.19  5.00e+00  2.96e+01   5.4*sigma
   A 124  ALA  CA
   A 124  ALA  C
   A 125  LYS  N
   A 125  LYS  CA        180.00   158.72    21.28  5.00e+00  1.81e+01   4.3*sigma
   A  95  ASP  CA
   A  95  ASP  C
   A  96  GLY  N
   A  96  GLY  CA        180.00   159.29    20.71  5.00e+00  1.71e+01   4.1*sigma
   A  21  ARG  CA
   A  21  ARG  C
   A  22  PRO  N
   A  22  PRO  CA        180.00   159.95    20.05  5.00e+00  1.61e+01   4.0*sigma

  Min. delta:    0.061
  Max. delta:   73.116
  Mean delta:   12.233

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.001
  Max. delta:    0.433
  Mean delta:    0.105

                       ----------Planar groups----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.069
  Mean delta:    0.014

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.011   0.052   2241  Z= 0.590
    Angle     :  1.954  10.784   4077  Z= 0.881
    Chirality :  0.105   0.433    176
    Planarity :  0.011   0.067    326
    Dihedral  : 11.028  73.116    768
    Min Nonbonded Distance : 1.761
  
  Molprobity Statistics.
    All-atom Clashscore : 2.71
    Ramachandran Plot:
      Outliers :  5.11 %
      Allowed  :  9.49 %
      Favored  : 85.40 %
    Rotamer:
      Outliers :  0.81 %
      Allowed  :  0.00 %
      Favored  : 99.19 %
    Cbeta Deviations :  3.03 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.00 %
      Twisted Proline : 0.00 %
      Twisted General : 0.00 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole:  0.05 (0.71), residues: 137
    helix:  2.49 (0.53), residues: 64
    sheet:  None (None), residues: 0
    loop : -2.47 (0.73), residues: 73
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.006   0.001   HIS A 139 
   PHE   0.088   0.023   PHE A  45 
   TYR   0.120   0.019   TYR A  68 
   ARG   0.051   0.012   ARG A 129 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.006   0.001   HIS A 139 
   PHE   0.058   0.020   PHE A  45 
   TYR   0.073   0.017   TYR A  68 
   ARG   0.022   0.005   ARG A  58 

                     ----------Asn/Gln/His flips----------                     

  No backwards Asn/Gln/His sidechains found.

=================================== Summary ===================================

  Ramachandran outliers =   6.57 %
                favored =  78.83 %
  Rotamer outliers      =   0.00 %
  C-beta deviations     =     6
  Clashscore            =   5.41
  RMS(bonds)            =   0.0121
  RMS(angles)           =   2.19
  MolProbity score      =   2.04

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py
  Time building chain proxies: 0.98, per 1000 atoms: 0.44
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (69.557, 38.168, 55.252, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.

End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000 (Z=  0.000)
  Max. delta:    0.045 (Z=  3.623)
  Mean delta:    0.015 (Z=  0.815)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 116  ASP  CA
   A 116  ASP  C
   A 117  PRO  N         116.90   128.18   -11.28  1.50e+00  5.65e+01   7.5*sigma
   A 132  LEU  C
   A 133  GLU  N
   A 133  GLU  CA        121.70   134.81   -13.11  1.80e+00  5.30e+01   7.3*sigma
   A  29  ASP  CA
   A  29  ASP  CB
   A  29  ASP  CG        112.60   118.23    -5.63  1.00e+00  3.17e+01   5.6*sigma
   A 132  LEU  CA
   A 132  LEU  C
   A 133  GLU  N         116.20   126.56   -10.36  2.00e+00  2.69e+01   5.2*sigma
   A 134  HIS  ND1
   A 134  HIS  CG
   A 134  HIS  CD2       106.10   111.07    -4.97  1.00e+00  2.47e+01   5.0*sigma
   A  88  ASP  CA
   A  88  ASP  CB
   A  88  ASP  CG        112.60   107.64     4.96  1.00e+00  2.46e+01   5.0*sigma
   A 132  LEU  O
   A 132  LEU  C
   A 133  GLU  N         123.00   115.20     7.80  1.60e+00  2.38e+01   4.9*sigma
   A 116  ASP  O
   A 116  ASP  C
   A 117  PRO  N         123.00   115.32     7.68  1.60e+00  2.31e+01   4.8*sigma
   A 133  GLU  N
   A 133  GLU  CA
   A 133  GLU  CB        110.50   118.48    -7.98  1.70e+00  2.20e+01   4.7*sigma
   A 138  HIS  N
   A 138  HIS  CA
   A 138  HIS  C         111.00   123.96   -12.96  2.80e+00  2.14e+01   4.6*sigma
   A  73  GLY  C
   A  74  ASP  N
   A  74  ASP  CA        121.70   129.95    -8.25  1.80e+00  2.10e+01   4.6*sigma
   A 138  HIS  ND1
   A 138  HIS  CG
   A 138  HIS  CD2       106.10   110.56    -4.46  1.00e+00  1.99e+01   4.5*sigma
   A  43  HIS  ND1
   A  43  HIS  CG
   A  43  HIS  CD2       106.10   110.43    -4.33  1.00e+00  1.87e+01   4.3*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.42    -4.32  1.00e+00  1.87e+01   4.3*sigma
   A  51  ILE  CA
   A  51  ILE  C
   A  52  PRO  N         116.90   123.27    -6.37  1.50e+00  1.80e+01   4.2*sigma
   A 136  HIS  ND1
   A 136  HIS  CG
   A 136  HIS  CD2       106.10   110.31    -4.21  1.00e+00  1.77e+01   4.2*sigma
   A  88  ASP  N
   A  88  ASP  CA
   A  88  ASP  C         111.00   122.68   -11.68  2.80e+00  1.74e+01   4.2*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   110.27    -4.17  1.00e+00  1.74e+01   4.2*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.18    -4.08  1.00e+00  1.66e+01   4.1*sigma

  Min. delta:    0.003 (Z=  0.001)
  Max. delta:   13.108 (Z=  7.520)
  Mean delta:    2.207 (Z=  1.232)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 137  HIS  CA
   A 137  HIS  C
   A 138  HIS  N
   A 138  HIS  CA        180.00   111.00    69.00  5.00e+00  1.90e+02  13.8*sigma
   A 138  HIS  CA
   A 138  HIS  C
   A 139  HIS  N
   A 139  HIS  CA        180.00   125.25    54.75  5.00e+00  1.20e+02  10.9*sigma
   A  87  GLY  CA
   A  87  GLY  C
   A  88  ASP  N
   A  88  ASP  CA        180.00   144.28    35.72  5.00e+00  5.10e+01   7.1*sigma
   A  81  TYR  CA
   A  81  TYR  C
   A  82  THR  N
   A  82  THR  CA        180.00   156.33    23.67  5.00e+00  2.24e+01   4.7*sigma
   A 133  GLU  CA
   A 133  GLU  C
   A 134  HIS  N
   A 134  HIS  CA        180.00   157.55    22.45  5.00e+00  2.02e+01   4.5*sigma
   A 134  HIS  CA
   A 134  HIS  C
   A 135  HIS  N
   A 135  HIS  CA        180.00   158.96    21.04  5.00e+00  1.77e+01   4.2*sigma
   A  80  GLY  CA
   A  80  GLY  C
   A  81  TYR  N
   A  81  TYR  CA        180.00  -159.59   -20.41  5.00e+00  1.67e+01   4.1*sigma

  Min. delta:    0.001
  Max. delta:   69.000
  Mean delta:   11.857

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.001
  Max. delta:    0.422
  Mean delta:    0.096

                       ----------Planar groups----------                       

  atoms                 rms_deltas   delta_max    residual   deviation
   A  68  TYR  CB
   A  68  TYR  CG
   A  68  TYR  CD1
   A  68  TYR  CD2
   A  68  TYR  CE1
   A  68  TYR  CE2
   A  68  TYR  CZ
   A  68  TYR  OH            0.076       0.151      114.49   7.6*sigma

  Min. delta:    0.000
  Max. delta:    0.087
  Mean delta:    0.014

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

                       ----------Angle outliers----------                      

   A 138  HIS  HA , Angle N-CA-HA, observed: 96.968, delta from target: 13.032

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.011   0.045   2241  Z= 0.580
    Angle     :  1.980  13.108   4077  Z= 0.897
    Chirality :  0.096   0.422    176
    Planarity :  0.011   0.080    326
    Dihedral  : 10.109  69.000    768
    Min Nonbonded Distance : 1.736
  
  Molprobity Statistics.
    All-atom Clashscore : 4.96
    Ramachandran Plot:
      Outliers :  8.76 %
      Allowed  :  9.49 %
      Favored  : 81.75 %
    Rotamer:
      Outliers :  0.00 %
      Allowed  :  1.61 %
      Favored  : 98.39 %
    Cbeta Deviations :  0.76 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.76 %
      Twisted Proline : 0.00 %
      Twisted General : 2.29 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -1.28 (0.71), residues: 137
    helix:  0.86 (0.65), residues: 50
    sheet:  None (None), residues: 0
    loop : -2.04 (0.69), residues: 87
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.004   0.001   HIS A 134 
   PHE   0.097   0.016   PHE A  15 
   TYR   0.211   0.018   TYR A  68 
   ARG   0.066   0.011   ARG A  21 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.004   0.001   HIS A 134 
   PHE   0.062   0.015   PHE A  15 
   TYR   0.151   0.019   TYR A  68 
   ARG   0.006   0.002   ARG A  21 

                     ----------Asn/Gln/His flips----------                     

  No backwards Asn/Gln/His sidechains found.

=================================== Summary ===================================


End of input processing

=============================== Model properties ==============================


End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       


                        ----------Bond lengths----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000 (Z=  0.001)
  Max. delta:    0.044 (Z=  3.456)
  Mean delta:    0.016 (Z=  0.836)

                        ----------Bond angles----------                        

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000 (Z=  0.000)
  Max. delta:    0.059 (Z=  3.935)
  Mean delta:    0.016 (Z=  0.837)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 113  LYS  CA
   A 113  LYS  C
   A 114  PRO  N         116.90   125.69    -8.79  1.50e+00  3.43e+01   5.9*sigma
   A  61  LEU  CD1
   A  61  LEU  CG
   A  61  LEU  CD2       110.80   100.06    10.74  2.20e+00  2.38e+01   4.9*sigma
   A  43  HIS  ND1
   A  43  HIS  CG
   A  43  HIS  CD2       106.10   110.80    -4.70  1.00e+00  2.21e+01   4.7*sigma
   A  88  ASP  CA
   A  88  ASP  CB
   A  88  ASP  CG        112.60   107.98     4.62  1.00e+00  2.14e+01   4.6*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   110.40    -4.30  1.00e+00  1.85e+01   4.3*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.39    -4.29  1.00e+00  1.84e+01   4.3*sigma
   A   8  GLU  CB
   A   8  GLU  CG
   A   8  GLU  CD        112.60   105.31     7.29  1.70e+00  1.84e+01   4.3*sigma
   A 136  HIS  ND1
   A 136  HIS  CG
   A 136  HIS  CD2       106.10   110.35    -4.25  1.00e+00  1.80e+01   4.2*sigma
   A 138  HIS  ND1
   A 138  HIS  CG
   A 138  HIS  CD2       106.10   110.34    -4.24  1.00e+00  1.80e+01   4.2*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.31    -4.21  1.00e+00  1.77e+01   4.2*sigma
   A  82  THR  N
   A  82  THR  CA
   A  82  THR  CB        111.50   118.43    -6.93  1.70e+00  1.66e+01   4.1*sigma
   A  53  LEU  CA
   A  53  LEU  C
   A  54  PRO  N         116.90   123.02    -6.12  1.50e+00  1.66e+01   4.1*sigma

  Min. delta:    0.001 (Z=  0.001)
  Max. delta:   10.736 (Z=  5.858)
  Mean delta:    2.202 (Z=  1.225)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  81  TYR  CA
   A  81  TYR  C
   A  82  THR  N
   A  82  THR  CA        180.00   156.88    23.12  5.00e+00  2.14e+01   4.6*sigma
   A 113  LYS  CA
   A 113  LYS  C
   A 114  PRO  N
   A 114  PRO  CA        180.00   157.71    22.29  5.00e+00  1.99e+01   4.5*sigma
   A  82  THR  CA
   A  82  THR  C
   A  83  THR  N
   A  83  THR  CA        180.00   158.84    21.16  5.00e+00  1.79e+01   4.2*sigma

  Min. delta:    0.022
  Max. delta:   56.914
  Mean delta:    9.885

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.001
  Max. delta:    0.501
  Mean delta:    0.099

                       ----------Planar groups----------                       

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  36  ASP  CA
   A  36  ASP  CB
   A  36  ASP  CG        112.60   105.22     7.38  1.00e+00  5.45e+01   7.4*sigma
   A 136  HIS  C
   A 137  HIS  N
   A 137  HIS  CA        121.70   133.36   -11.66  1.80e+00  4.20e+01   6.5*sigma
   A  18  VAL  CA
   A  18  VAL  CB
   A  18  VAL  CG1       110.40   119.51    -9.11  1.70e+00  2.87e+01   5.4*sigma
   A 113  LYS  CA
   A 113  LYS  C
   A 114  PRO  N         116.90   124.73    -7.83  1.50e+00  2.72e+01   5.2*sigma
   A  51  ILE  CA
   A  51  ILE  CB
   A  51  ILE  CG2       110.50   118.79    -8.29  1.70e+00  2.38e+01   4.9*sigma
   A 138  HIS  N
   A 138  HIS  CA
   A 138  HIS  C         111.00   124.29   -13.29  2.80e+00  2.25e+01   4.7*sigma
   A  43  HIS  CA
   A  43  HIS  CB
   A  43  HIS  CG        113.80   118.43    -4.63  1.00e+00  2.14e+01   4.6*sigma
   A 136  HIS  O
   A 136  HIS  C
   A 137  HIS  N         123.00   115.66     7.34  1.60e+00  2.11e+01   4.6*sigma
   A 136  HIS  CA
   A 136  HIS  C
   A 137  HIS  N         116.20   125.27    -9.07  2.00e+00  2.06e+01   4.5*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.51    -4.41  1.00e+00  1.95e+01   4.4*sigma
   A 116  ASP  CA
   A 116  ASP  C
   A 117  PRO  N         116.90   123.51    -6.61  1.50e+00  1.94e+01   4.4*sigma
   A  43  HIS  ND1
   A  43  HIS  CG
   A  43  HIS  CD2       106.10   110.37    -4.27  1.00e+00  1.83e+01   4.3*sigma
   A  15  PHE  O
   A  15  PHE  C
   A  16  GLU  N         123.00   116.25     6.75  1.60e+00  1.78e+01   4.2*sigma
   A 134  HIS  ND1
   A 134  HIS  CG
   A 134  HIS  CD2       106.10   110.32    -4.22  1.00e+00  1.78e+01   4.2*sigma
   A 136  HIS  ND1
   A 136  HIS  CG
   A 136  HIS  CD2       106.10   110.29    -4.19  1.00e+00  1.75e+01   4.2*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.25    -4.15  1.00e+00  1.72e+01   4.1*sigma
   A  72  ASN  CA
   A  72  ASN  CB
   A  72  ASN  CG        112.60   108.53     4.07  1.00e+00  1.66e+01   4.1*sigma
   A 130  SER  N
   A 130  SER  CA
   A 130  SER  CB        110.50   117.42    -6.92  1.70e+00  1.66e+01   4.1*sigma
   A  48  ALA  C
   A  49  GLU  N
   A  49  GLU  CA        121.70   128.98    -7.28  1.80e+00  1.64e+01   4.0*sigma

  Min. delta:    0.001 (Z=  0.001)
  Max. delta:   13.286 (Z=  7.385)
  Mean delta:    2.340 (Z=  1.292)

                      ----------Dihedral angles----------                      

  atoms                 rms_deltas   delta_max    residual   deviation
   A  15  PHE  CB
   A  15  PHE  CG
   A  15  PHE  CD1
   A  15  PHE  CD2
   A  15  PHE  CE1
   A  15  PHE  CE2
   A  15  PHE  CZ            0.081       0.121      113.61   6.0*sigma

  Min. delta:    0.000
  Max. delta:    0.107
  Mean delta:    0.015

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 138  HIS  CA
   A 138  HIS  C
   A 139  HIS  N
   A 139  HIS  CA        180.00   120.24    59.76  5.00e+00  1.43e+02  12.0*sigma
   A 129  ARG  CA
   A 129  ARG  C
   A 130  SER  N
   A 130  SER  CA        180.00   140.75    39.25  5.00e+00  6.16e+01   7.8*sigma
   A 136  HIS  CA
   A 136  HIS  C
   A 137  HIS  N
   A 137  HIS  CA          0.00    35.66   -35.66  5.00e+00  5.09e+01   7.1*sigma
   A 137  HIS  CA
   A 137  HIS  C
   A 138  HIS  N
   A 138  HIS  CA        180.00   145.66    34.34  5.00e+00  4.72e+01   6.9*sigma
   A 128  MET  CA
   A 128  MET  C
   A 129  ARG  N
   A 129  ARG  CA        180.00   148.67    31.33  5.00e+00  3.93e+01   6.3*sigma
   A 135  HIS  CA
   A 135  HIS  C
   A 136  HIS  N
   A 136  HIS  CA        180.00   153.36    26.64  5.00e+00  2.84e+01   5.3*sigma
   A 130  SER  CA
   A 130  SER  C
   A 131  ILE  N
   A 131  ILE  CA        180.00   155.64    24.36  5.00e+00  2.37e+01   4.9*sigma
   A  21  ARG  CA
   A  21  ARG  C
   A  22  PRO  N
   A  22  PRO  CA        180.00   157.31    22.69  5.00e+00  2.06e+01   4.5*sigma
   A 113  LYS  CA
   A 113  LYS  C
   A 114  PRO  N
   A 114  PRO  CA        180.00   157.68    22.32  5.00e+00  1.99e+01   4.5*sigma
   A 117  PRO  CA
   A 117  PRO  C
   A 118  ASP  N
   A 118  ASP  CA        180.00   159.04    20.96  5.00e+00  1.76e+01   4.2*sigma

  Min. delta:    0.006
  Max. delta:   59.764
  Mean delta:   11.840

                       ----------Chiral volumes----------                      

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

============================ Molprobity validation ============================

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.001
  Max. delta:    0.516
  Mean delta:    0.122

                       ----------Planar groups----------                       

  atoms                 rms_deltas   delta_max    residual   deviation
   A 105  TYR  CB
   A 105  TYR  CG
   A 105  TYR  CD1
   A 105  TYR  CD2
   A 105  TYR  CE1
   A 105  TYR  CE2
   A 105  TYR  CZ
   A 105  TYR  OH            0.095       0.165      178.88   8.2*sigma

  Min. delta:    0.000
  Max. delta:    0.095
  Mean delta:    0.016

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.011   0.044   2241  Z= 0.595
    Angle     :  1.981  11.000   4077  Z= 0.894
    Chirality :  0.099   0.501    176
    Planarity :  0.013   0.126    326
    Dihedral  :  8.996  57.997    768
    Min Nonbonded Distance : 1.701
  
  Molprobity Statistics.
    All-atom Clashscore : 3.16
    Ramachandran Plot:
      Outliers :  3.65 %
      Allowed  :  7.30 %
      Favored  : 89.05 %
    Rotamer:
      Outliers :  0.00 %
      Allowed  :  3.23 %
      Favored  : 96.77 %
    Cbeta Deviations :  0.76 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.00 %
      Twisted Proline : 0.00 %
      Twisted General : 0.00 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole:  0.37 (0.77), residues: 137
    helix:  1.07 (0.61), residues: 65
    sheet:  None (None), residues: 0
    loop : -0.47 (0.87), residues: 72
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.003   0.001   HIS A 139 
   PHE   0.235   0.036   PHE A  15 
   TYR   0.087   0.019   TYR A 111 
   ARG   0.079   0.011   ARG A 129 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.003   0.001   HIS A 139 
   PHE   0.121   0.030   PHE A  15 
   TYR   0.073   0.017   TYR A 111 
   ARG   0.024   0.004   ARG A 129 

                     ----------Asn/Gln/His flips----------                     

  No backwards Asn/Gln/His sidechains found.

=================================== Summary ===================================

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

                       ----------Angle outliers----------                      

   A 138  HIS  HA , Angle N-CA-HA, observed: 97.206, delta from target: 12.794

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.011   0.059   2241  Z= 0.596
    Angle     :  2.083  13.286   4077  Z= 0.939
    Chirality :  0.122   0.516    176
    Planarity :  0.014   0.115    326
    Dihedral  : 10.094  59.764    768
    Min Nonbonded Distance : 1.666
  
  Molprobity Statistics.
    All-atom Clashscore : 3.16
    Ramachandran Plot:
      Outliers :  4.38 %
      Allowed  : 16.06 %
      Favored  : 79.56 %
    Rotamer:
      Outliers :  0.81 %
      Allowed  :  3.23 %
      Favored  : 95.97 %
    Cbeta Deviations :  3.03 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.00 %
      Twisted Proline : 0.00 %
      Twisted General : 3.82 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -0.86 (0.77), residues: 137
    helix:  1.36 (0.56), residues: 64
    sheet:  None (None), residues: 0
    loop : -2.53 (0.87), residues: 73
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.006   0.002   HIS A 138 
   PHE   0.160   0.044   PHE A  15 
   TYR   0.235   0.032   TYR A 105 
   ARG   0.030   0.007   ARG A  21 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.006   0.002   HIS A 138 
   PHE   0.079   0.033   PHE A  15 
   TYR   0.165   0.031   TYR A 105 
   ARG   0.016   0.004   ARG A  21 

                     ----------Asn/Gln/His flips----------                     

  No backwards Asn/Gln/His sidechains found.

=================================== Summary ===================================

  Ramachandran outliers =   5.11 %
                favored =  85.40 %
  Rotamer outliers      =   0.81 %
  C-beta deviations     =     4
  Clashscore            =   2.71
  RMS(bonds)            =   0.0110
  RMS(angles)           =   1.95
  MolProbity score      =   1.71

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py
  Ramachandran outliers =   8.76 %
                favored =  81.75 %
  Rotamer outliers      =   0.00 %
  C-beta deviations     =     1
  Clashscore            =   4.96
  RMS(bonds)            =   0.0110
  RMS(angles)           =   1.98
  MolProbity score      =   1.97

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py
  Ramachandran outliers =   4.38 %
                favored =  79.56 %
  Rotamer outliers      =   0.81 %
  C-beta deviations     =     4
  Clashscore            =   3.16
  RMS(bonds)            =   0.0112
  RMS(angles)           =   2.08
  MolProbity score      =   1.85

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py
  Ramachandran outliers =   3.65 %
                favored =  89.05 %
  Rotamer outliers      =   0.00 %
  C-beta deviations     =     1
  Clashscore            =   3.16
  RMS(bonds)            =   0.0112
  RMS(angles)           =   1.98
  MolProbity score      =   1.68

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py

End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  atoms                 ideal   model   delta   sigma   slack  residual   deviation
   A  13  SER  CA
   A  13  SER  CB          1.53     1.61    -0.08  2.00e-02  1.74e+01   4.2*sigma
   A  13  SER  N
   A  13  SER  CA          1.46     1.54    -0.08  1.90e-02  1.66e+01   4.1*sigma

  Min. delta:    0.000 (Z=  0.000)
  Max. delta:    0.083 (Z=  4.174)
  Mean delta:    0.016 (Z=  0.832)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  12  TYR  C
   A  13  SER  N
   A  13  SER  CA        121.70   136.93   -15.23  1.80e+00  7.16e+01   8.5*sigma
   A  15  PHE  CA
   A  15  PHE  CB
   A  15  PHE  CG        113.80   121.37    -7.57  1.00e+00  5.73e+01   7.6*sigma
   A  72  ASN  CA
   A  72  ASN  CB
   A  72  ASN  CG        112.60   107.30     5.30  1.00e+00  2.81e+01   5.3*sigma
   A  29  ASP  CA
   A  29  ASP  CB
   A  29  ASP  CG        112.60   117.55    -4.95  1.00e+00  2.45e+01   4.9*sigma
   A  13  SER  N
   A  13  SER  CA
   A  13  SER  CB        110.50   118.40    -7.90  1.70e+00  2.16e+01   4.6*sigma
   A  45  PHE  CA
   A  45  PHE  CB
   A  45  PHE  CG        113.80   109.44     4.36  1.00e+00  1.90e+01   4.4*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.38    -4.28  1.00e+00  1.84e+01   4.3*sigma
   A 136  HIS  ND1
   A 136  HIS  CG
   A 136  HIS  CD2       106.10   110.33    -4.23  1.00e+00  1.79e+01   4.2*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.20    -4.10  1.00e+00  1.68e+01   4.1*sigma
   A  43  HIS  ND1
   A  43  HIS  CG
   A  43  HIS  CD2       106.10   110.19    -4.09  1.00e+00  1.67e+01   4.1*sigma
   A  40  LYS  C
   A  40  LYS  CA
   A  40  LYS  CB        110.10   102.41     7.69  1.90e+00  1.64e+01   4.0*sigma
   A 101  LYS  CA
   A 101  LYS  C
   A 102  PRO  N         116.90   122.91    -6.01  1.50e+00  1.61e+01   4.0*sigma

  Min. delta:    0.001 (Z=  0.001)
  Max. delta:   15.235 (Z=  8.464)
  Mean delta:    2.241 (Z=  1.256)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  73  GLY  CA
   A  73  GLY  C
   A  74  ASP  N
   A  74  ASP  CA        180.00   142.43    37.57  5.00e+00  5.65e+01   7.5*sigma
   A 119  LEU  CA
   A 119  LEU  C
   A 120  GLU  N
   A 120  GLU  CA        180.00   155.35    24.65  5.00e+00  2.43e+01   4.9*sigma
   A 122  ILE  CA
   A 122  ILE  C
   A 123  GLU  N
   A 123  GLU  CA        180.00   155.41    24.59  5.00e+00  2.42e+01   4.9*sigma
   A  99  LEU  CA
   A  99  LEU  C
   A 100  GLN  N
   A 100  GLN  CA        180.00   156.92    23.08  5.00e+00  2.13e+01   4.6*sigma

  Min. delta:    0.040
  Max. delta:   73.855
  Mean delta:   11.438

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.308
  Mean delta:    0.094

                       ----------Planar groups----------                       

  atoms                 rms_deltas   delta_max    residual   deviation
   A  12  TYR  CB
   A  12  TYR  CG
   A  12  TYR  CD1
   A  12  TYR  CD2
   A  12  TYR  CE1
   A  12  TYR  CE2
   A  12  TYR  CZ
   A  12  TYR  OH            0.096       0.104      185.67   5.2*sigma
   A  81  TYR  CB
   A  81  TYR  CG
   A  81  TYR  CD1
   A  81  TYR  CD2
   A  81  TYR  CE1
   A  81  TYR  CE2
   A  81  TYR  CZ
   A  81  TYR  OH            0.043       0.083       37.27   4.1*sigma

  Min. delta:    0.000
  Max. delta:    0.096
  Mean delta:    0.016

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

                       ----------Angle outliers----------                      

   A  13  SER  HA , Angle N-CA-HA, observed: 94.183, delta from target: 15.817

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.011   0.083   2241  Z= 0.592
    Angle     :  2.004  15.817   4077  Z= 0.911
    Chirality :  0.094   0.308    176
    Planarity :  0.013   0.102    326
    Dihedral  : 10.027  73.855    768
    Min Nonbonded Distance : 1.682
  
  Molprobity Statistics.
    All-atom Clashscore : 5.86
    Ramachandran Plot:
      Outliers :  2.92 %
      Allowed  : 12.41 %
      Favored  : 84.67 %
    Rotamer:
      Outliers :  0.81 %
      Allowed  :  1.61 %
      Favored  : 97.58 %
    Cbeta Deviations :  0.76 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.00 %
      Twisted Proline : 0.00 %
      Twisted General : 0.76 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -0.88 (0.77), residues: 137
    helix:  0.13 (0.69), residues: 53
    sheet: -3.09 (0.97), residues: 10
    loop : -0.66 (0.88), residues: 74
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.005   0.001   HIS A 139 
   PHE   0.097   0.024   PHE A  15 
   TYR   0.210   0.031   TYR A  12 
   ARG   0.039   0.010   ARG A  21 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.005   0.001   HIS A 139 
   PHE   0.047   0.017   PHE A  15 
   TYR   0.169   0.032   TYR A  12 
   ARG   0.011   0.003   ARG A  58 

                     ----------Asn/Gln/His flips----------                     

  No backwards Asn/Gln/His sidechains found.

=================================== Summary ===================================


End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000 (Z=  0.001)
  Max. delta:    0.055 (Z=  3.939)
  Mean delta:    0.016 (Z=  0.822)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 136  HIS  C
   A 137  HIS  N
   A 137  HIS  CA        121.70   138.74   -17.04  1.80e+00  8.96e+01   9.5*sigma
   A 134  HIS  C
   A 135  HIS  N
   A 135  HIS  CA        121.70   137.96   -16.26  1.80e+00  8.16e+01   9.0*sigma
   A  51  ILE  CA
   A  51  ILE  C
   A  52  PRO  N         116.90   125.71    -8.81  1.50e+00  3.45e+01   5.9*sigma
   A 134  HIS  N
   A 134  HIS  CA
   A 134  HIS  CB        110.50   119.72    -9.22  1.70e+00  2.94e+01   5.4*sigma
   A 136  HIS  O
   A 136  HIS  C
   A 137  HIS  N         123.00   114.57     8.43  1.60e+00  2.78e+01   5.3*sigma
   A 136  HIS  CA
   A 136  HIS  CB
   A 136  HIS  CG        113.80   118.99    -5.19  1.00e+00  2.69e+01   5.2*sigma
   A 134  HIS  CA
   A 134  HIS  CB
   A 134  HIS  CG        113.80   118.99    -5.19  1.00e+00  2.69e+01   5.2*sigma
   A 137  HIS  CA
   A 137  HIS  CB
   A 137  HIS  CG        113.80   118.62    -4.82  1.00e+00  2.32e+01   4.8*sigma
   A 135  HIS  N
   A 135  HIS  CA
   A 135  HIS  CB        110.50   118.56    -8.06  1.70e+00  2.25e+01   4.7*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   110.76    -4.66  1.00e+00  2.17e+01   4.7*sigma
   A  94  GLY  C
   A  95  ASP  N
   A  95  ASP  CA        121.70   130.05    -8.35  1.80e+00  2.15e+01   4.6*sigma
   A 134  HIS  O
   A 134  HIS  C
   A 135  HIS  N         123.00   115.66     7.34  1.60e+00  2.10e+01   4.6*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.66    -4.56  1.00e+00  2.08e+01   4.6*sigma
   A 136  HIS  CA
   A 136  HIS  C
   A 137  HIS  N         116.20   125.28    -9.08  2.00e+00  2.06e+01   4.5*sigma
   A 137  HIS  N
   A 137  HIS  CA
   A 137  HIS  CB        110.50   118.13    -7.63  1.70e+00  2.01e+01   4.5*sigma
   A  52  PRO  N
   A  52  PRO  CD
   A  52  PRO  CG        103.20   109.88    -6.68  1.50e+00  1.98e+01   4.5*sigma
   A 134  HIS  ND1
   A 134  HIS  CG
   A 134  HIS  CD2       106.10   110.54    -4.44  1.00e+00  1.97e+01   4.4*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.51    -4.41  1.00e+00  1.94e+01   4.4*sigma
   A 138  HIS  ND1
   A 138  HIS  CG
   A 138  HIS  CD2       106.10   110.49    -4.39  1.00e+00  1.92e+01   4.4*sigma
   A  32  GLU  CB
   A  32  GLU  CG
   A  32  GLU  CD        112.60   119.88    -7.28  1.70e+00  1.83e+01   4.3*sigma
   A  43  HIS  ND1
   A  43  HIS  CG
   A  43  HIS  CD2       106.10   110.36    -4.26  1.00e+00  1.81e+01   4.3*sigma
   A 117  PRO  CA
   A 117  PRO  N
   A 117  PRO  CD        112.00   106.10     5.90  1.40e+00  1.78e+01   4.2*sigma
   A 136  HIS  ND1
   A 136  HIS  CG
   A 136  HIS  CD2       106.10   110.20    -4.10  1.00e+00  1.68e+01   4.1*sigma
   A 113  LYS  CA
   A 113  LYS  C
   A 114  PRO  N         116.90   123.05    -6.15  1.50e+00  1.68e+01   4.1*sigma

  Min. delta:    0.005 (Z=  0.001)
  Max. delta:   17.039 (Z=  9.466)
  Mean delta:    2.430 (Z=  1.356)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 116  ASP  CA
   A 116  ASP  C
   A 117  PRO  N
   A 117  PRO  CA        180.00   130.08    49.92  5.00e+00  9.97e+01  10.0*sigma
   A 117  PRO  CA
   A 117  PRO  C
   A 118  ASP  N
   A 118  ASP  CA        180.00   150.73    29.27  5.00e+00  3.43e+01   5.9*sigma
   A 114  PRO  CA
   A 114  PRO  C
   A 115  ALA  N
   A 115  ALA  CA        180.00   154.27    25.73  5.00e+00  2.65e+01   5.1*sigma
   A  83  THR  CA
   A  83  THR  C
   A  84  GLU  N
   A  84  GLU  CA        180.00   158.47    21.53  5.00e+00  1.85e+01   4.3*sigma

  Min. delta:    0.007
  Max. delta:   62.188
  Mean delta:   11.029

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.001
  Max. delta:    0.494
  Mean delta:    0.117

                       ----------Planar groups----------                       

  atoms                 rms_deltas   delta_max    residual   deviation
   A 135  HIS  CB
   A 135  HIS  CG
   A 135  HIS  ND1
   A 135  HIS  CD2
   A 135  HIS  CE1
   A 135  HIS  NE2           0.071       0.095       75.30   4.8*sigma
   A 111  TYR  CB
   A 111  TYR  CG
   A 111  TYR  CD1
   A 111  TYR  CD2
   A 111  TYR  CE1
   A 111  TYR  CE2
   A 111  TYR  CZ
   A 111  TYR  OH            0.090       0.094      160.76   4.7*sigma
   A  15  PHE  CB
   A  15  PHE  CG
   A  15  PHE  CD1
   A  15  PHE  CD2
   A  15  PHE  CE1
   A  15  PHE  CE2
   A  15  PHE  CZ            0.063       0.094       70.42   4.7*sigma
   A  68  TYR  CB
   A  68  TYR  CG
   A  68  TYR  CD1
   A  68  TYR  CD2
   A  68  TYR  CE1
   A  68  TYR  CE2
   A  68  TYR  CZ
   A  68  TYR  OH            0.057       0.092       65.48   4.6*sigma

  Min. delta:    0.000
  Max. delta:    0.179
  Mean delta:    0.020

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.011   0.055   2241  Z= 0.585
    Angle     :  2.128  17.039   4077  Z= 0.974
    Chirality :  0.117   0.494    176
    Planarity :  0.016   0.179    326
    Dihedral  : 10.559  63.293    768
    Min Nonbonded Distance : 1.725
  
  Molprobity Statistics.
    All-atom Clashscore : 4.51
    Ramachandran Plot:
      Outliers :  7.30 %
      Allowed  :  9.49 %
      Favored  : 83.21 %
    Rotamer:
      Outliers :  0.00 %
      Allowed  :  2.42 %
      Favored  : 97.58 %
    Cbeta Deviations :  1.52 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 1.53 %
      Twisted Proline : 14.29 %
      Twisted General : 0.00 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -1.59 (0.76), residues: 137
    helix:  1.06 (0.63), residues: 65
    sheet:  None (None), residues: 0
    loop : -3.31 (0.78), residues: 72
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.006   0.002   HIS A 139 
   PHE   0.173   0.030   PHE A  15 
   TYR   0.232   0.031   TYR A 111 
   ARG   0.017   0.006   ARG A 129 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.006   0.002   HIS A 139 
   PHE   0.094   0.025   PHE A  15 
   TYR   0.171   0.032   TYR A 111 
   ARG   0.008   0.002   ARG A 129 

                     ----------Asn/Gln/His flips----------                     

  No backwards Asn/Gln/His sidechains found.

=================================== Summary ===================================

  Ramachandran outliers =   2.92 %
                favored =  84.67 %
  Rotamer outliers      =   0.81 %
  C-beta deviations     =     1
  Clashscore            =   5.86
  RMS(bonds)            =   0.0112
  RMS(angles)           =   2.00
  MolProbity score      =   1.99

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py

End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000 (Z=  0.001)
  Max. delta:    0.049 (Z=  3.564)
  Mean delta:    0.016 (Z=  0.836)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  29  ASP  CA
   A  29  ASP  CB
   A  29  ASP  CG        112.60   120.37    -7.77  1.00e+00  6.04e+01   7.8*sigma
   A  45  PHE  CA
   A  45  PHE  CB
   A  45  PHE  CG        113.80   107.68     6.12  1.00e+00  3.75e+01   6.1*sigma
   A 116  ASP  CA
   A 116  ASP  C
   A 117  PRO  N         116.90   125.64    -8.74  1.50e+00  3.40e+01   5.8*sigma
   A 113  LYS  CA
   A 113  LYS  C
   A 114  PRO  N         116.90   124.90    -8.00  1.50e+00  2.84e+01   5.3*sigma
   A  43  HIS  ND1
   A  43  HIS  CG
   A  43  HIS  CD2       106.10   110.85    -4.75  1.00e+00  2.25e+01   4.7*sigma
   A  95  ASP  CA
   A  95  ASP  CB
   A  95  ASP  CG        112.60   107.92     4.68  1.00e+00  2.19e+01   4.7*sigma
   A 139  HIS  N
   A 139  HIS  CA
   A 139  HIS  CB        110.50   118.28    -7.78  1.70e+00  2.09e+01   4.6*sigma
   A  94  GLY  C
   A  95  ASP  N
   A  95  ASP  CA        121.70   129.61    -7.91  1.80e+00  1.93e+01   4.4*sigma
   A 134  HIS  ND1
   A 134  HIS  CG
   A 134  HIS  CD2       106.10   110.49    -4.39  1.00e+00  1.93e+01   4.4*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   110.47    -4.37  1.00e+00  1.91e+01   4.4*sigma
   A 101  LYS  CA
   A 101  LYS  C
   A 102  PRO  N         116.90   123.44    -6.54  1.50e+00  1.90e+01   4.4*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.44    -4.34  1.00e+00  1.88e+01   4.3*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.25    -4.15  1.00e+00  1.72e+01   4.1*sigma

  Min. delta:    0.001 (Z=  0.001)
  Max. delta:    8.807 (Z=  7.770)
  Mean delta:    2.235 (Z=  1.260)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 138  HIS  CA
   A 138  HIS  C
   A 139  HIS  N
   A 139  HIS  CA        180.00   151.97    28.03  5.00e+00  3.14e+01   5.6*sigma

  Min. delta:    0.072
  Max. delta:   65.592
  Mean delta:   10.234

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.405
  Mean delta:    0.109

                       ----------Planar groups----------                       

  atoms                 rms_deltas   delta_max    residual   deviation
   A  43  HIS  CB
   A  43  HIS  CG
   A  43  HIS  ND1
   A  43  HIS  CD2
   A  43  HIS  CE1
   A  43  HIS  NE2           0.063       0.085       59.95   4.3*sigma

  Min. delta:    0.000
  Max. delta:    0.070
  Mean delta:    0.014

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.011   0.049   2241  Z= 0.595
    Angle     :  2.023  11.857   4077  Z= 0.919
    Chirality :  0.109   0.405    176
    Planarity :  0.011   0.081    326
    Dihedral  :  8.964  65.592    768
    Min Nonbonded Distance : 1.637
  
  Molprobity Statistics.
    All-atom Clashscore : 2.26
    Ramachandran Plot:
      Outliers :  2.19 %
      Allowed  : 10.95 %
      Favored  : 86.86 %
    Rotamer:
      Outliers :  0.00 %
      Allowed  :  0.00 %
      Favored  : 100.00 %
    Cbeta Deviations :  0.76 %
    Peptide Plane:
      Cis-proline     : 14.29 %
      Cis-general     : 0.00 %
      Twisted Proline : 0.00 %
      Twisted General : 0.00 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -0.75 (0.70), residues: 137
    helix:  0.46 (0.54), residues: 81
    sheet:  None (None), residues: 0
    loop : -1.95 (0.85), residues: 56
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.007   0.002   HIS A 138 
   PHE   0.141   0.023   PHE A  45 
   TYR   0.087   0.017   TYR A  68 
   ARG   0.043   0.008   ARG A  58 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.007   0.002   HIS A 138 
   PHE   0.078   0.021   PHE A  45 
   TYR   0.073   0.016   TYR A  68 
   ARG   0.023   0.004   ARG A  58 

                     ----------Asn/Gln/His flips----------                     

  No backwards Asn/Gln/His sidechains found.

=================================== Summary ===================================


End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000 (Z=  0.000)
  Max. delta:    0.061 (Z=  3.593)
  Mean delta:    0.016 (Z=  0.830)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  30  ILE  CA
   A  30  ILE  CB
   A  30  ILE  CG1       110.40   122.13   -11.73  1.70e+00  4.76e+01   6.9*sigma
   A  51  ILE  CA
   A  51  ILE  C
   A  52  PRO  N         116.90   125.08    -8.18  1.50e+00  2.98e+01   5.5*sigma
   A  67  PHE  CA
   A  67  PHE  CB
   A  67  PHE  CG        113.80   108.89     4.91  1.00e+00  2.42e+01   4.9*sigma
   A  53  LEU  CA
   A  53  LEU  C
   A  54  PRO  N         116.90   124.22    -7.32  1.50e+00  2.38e+01   4.9*sigma
   A 113  LYS  CA
   A 113  LYS  C
   A 114  PRO  N         116.90   123.96    -7.06  1.50e+00  2.21e+01   4.7*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.57    -4.47  1.00e+00  2.00e+01   4.5*sigma
   A  50  TYR  C
   A  51  ILE  N
   A  51  ILE  CA        121.70   129.75    -8.05  1.80e+00  2.00e+01   4.5*sigma
   A 136  HIS  ND1
   A 136  HIS  CG
   A 136  HIS  CD2       106.10   110.49    -4.39  1.00e+00  1.93e+01   4.4*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   110.38    -4.28  1.00e+00  1.83e+01   4.3*sigma
   A  30  ILE  C
   A  31  LEU  N
   A  31  LEU  CA        121.70   129.37    -7.67  1.80e+00  1.82e+01   4.3*sigma
   A 111  TYR  C
   A 111  TYR  CA
   A 111  TYR  CB        110.10   102.05     8.05  1.90e+00  1.79e+01   4.2*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.30    -4.20  1.00e+00  1.76e+01   4.2*sigma
   A  43  HIS  CB
   A  43  HIS  CG
   A  43  HIS  ND1       122.70   116.40     6.30  1.50e+00  1.76e+01   4.2*sigma
   A 134  HIS  ND1
   A 134  HIS  CG
   A 134  HIS  CD2       106.10   110.25    -4.15  1.00e+00  1.73e+01   4.2*sigma
   A 139  HIS  ND1
   A 139  HIS  CE1
   A 139  HIS  NE2       108.40   112.47    -4.07  1.00e+00  1.66e+01   4.1*sigma
   A 138  HIS  ND1
   A 138  HIS  CG
   A 138  HIS  CD2       106.10   110.15    -4.05  1.00e+00  1.64e+01   4.1*sigma
   A 118  ASP  C
   A 119  LEU  N
   A 119  LEU  CA        121.70   128.93    -7.23  1.80e+00  1.61e+01   4.0*sigma

  Min. delta:    0.001 (Z=  0.001)
  Max. delta:   11.727 (Z=  6.898)
  Mean delta:    2.352 (Z=  1.288)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 138  HIS  CA
   A 138  HIS  C
   A 139  HIS  N
   A 139  HIS  CA        180.00   159.69    20.31  5.00e+00  1.65e+01   4.1*sigma

  Min. delta:    0.026
  Max. delta:   62.455
  Mean delta:   11.057

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.001
  Max. delta:    0.475
  Mean delta:    0.112

                       ----------Planar groups----------                       

  atoms                 rms_deltas   delta_max    residual   deviation
   A  68  TYR  CB
   A  68  TYR  CG
   A  68  TYR  CD1
   A  68  TYR  CD2
   A  68  TYR  CE1
   A  68  TYR  CE2
   A  68  TYR  CZ
   A  68  TYR  OH            0.125       0.130      310.17   6.5*sigma
   A  91  TYR  CB
   A  91  TYR  CG
   A  91  TYR  CD1
   A  91  TYR  CD2
   A  91  TYR  CE1
   A  91  TYR  CE2
   A  91  TYR  CZ
   A  91  TYR  OH            0.063       0.117       79.82   5.9*sigma
   A 105  TYR  CB
   A 105  TYR  CG
   A 105  TYR  CD1
   A 105  TYR  CD2
   A 105  TYR  CE1
   A 105  TYR  CE2
   A 105  TYR  CZ
   A 105  TYR  OH            0.052       0.098       53.31   4.9*sigma
   A  45  PHE  CB
   A  45  PHE  CG
   A  45  PHE  CD1
   A  45  PHE  CD2
   A  45  PHE  CE1
   A  45  PHE  CE2
   A  45  PHE  CZ            0.061       0.094       64.33   4.7*sigma

  Min. delta:    0.000
  Max. delta:    0.125
  Mean delta:    0.016

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

                       ----------Angle outliers----------                      

   A   2  LEU  HG , Angle CB-CG-HG, observed: 93.277, delta from target: 15.723

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.011   0.061   2241  Z= 0.591
    Angle     :  2.091  15.723   4077  Z= 0.938
    Chirality :  0.112   0.475    176
    Planarity :  0.014   0.129    326
    Dihedral  : 10.639  69.913    768
    Min Nonbonded Distance : 1.723
  
  Molprobity Statistics.
    All-atom Clashscore : 9.02
    Ramachandran Plot:
      Outliers :  1.46 %
      Allowed  :  8.76 %
      Favored  : 89.78 %
    Rotamer:
      Outliers :  0.81 %
      Allowed  :  4.03 %
      Favored  : 95.16 %
    Cbeta Deviations :  1.52 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.00 %
      Twisted Proline : 0.00 %
      Twisted General : 0.00 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -1.64 (0.66), residues: 137
    helix:  0.51 (0.53), residues: 77
    sheet:  None (None), residues: 0
    loop : -3.42 (0.68), residues: 60
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.005   0.001   HIS A 139 
   PHE   0.163   0.044   PHE A  45 
   TYR   0.251   0.036   TYR A  68 
   ARG   0.021   0.005   ARG A  58 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.005   0.001   HIS A 139 
   PHE   0.094   0.036   PHE A  45 
   TYR   0.211   0.036   TYR A  68 
   ARG   0.004   0.001   ARG A 127 

                     ----------Asn/Gln/His flips----------                     

  No backwards Asn/Gln/His sidechains found.

=================================== Summary ===================================

  Ramachandran outliers =   7.30 %
                favored =  83.21 %
  Rotamer outliers      =   0.00 %
  C-beta deviations     =     2
  Clashscore            =   4.51
  RMS(bonds)            =   0.0110
  RMS(angles)           =   2.13
  MolProbity score      =   1.92

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py
  Ramachandran outliers =   2.19 %
                favored =  86.86 %
  Rotamer outliers      =   0.00 %
  C-beta deviations     =     1
  Clashscore            =   2.26
  RMS(bonds)            =   0.0113
  RMS(angles)           =   2.02
  MolProbity score      =   1.63

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py
  Ramachandran outliers =   1.46 %
                favored =  89.78 %
  Rotamer outliers      =   0.81 %
  C-beta deviations     =     2
  Clashscore            =   9.02
  RMS(bonds)            =   0.0113
  RMS(angles)           =   2.09
  MolProbity score      =   2.04

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'PTRANS': 7, 'TRANS': 131}

  Symmetric amino acids flipped
    Residue "A GLU    8": "OE1" <-> "OE2"
    Residue "A TYR   12": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   24": "OE1" <-> "OE2"
    Residue "A GLU   49": "OE1" <-> "OE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A PHE   67": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU   75": "OE1" <-> "OE2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ASP  116": "OD1" <-> "OD2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""

End of input processing

=============================== Model properties ==============================


End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000 (Z=  0.002)
  Max. delta:    0.055 (Z=  3.530)
  Mean delta:    0.016 (Z=  0.855)

                        ----------Bond angles----------                        

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000 (Z=  0.001)
  Max. delta:    0.084 (Z=  3.650)
  Mean delta:    0.017 (Z=  0.919)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  51  ILE  CA
   A  51  ILE  C
   A  52  PRO  N         116.90   129.01   -12.11  1.50e+00  6.51e+01   8.1*sigma
   A  29  ASP  CA
   A  29  ASP  CB
   A  29  ASP  CG        112.60   120.04    -7.44  1.00e+00  5.53e+01   7.4*sigma
   A  97  SER  N
   A  97  SER  CA
   A  97  SER  CB        110.50   121.08   -10.58  1.70e+00  3.87e+01   6.2*sigma
   A  51  ILE  O
   A  51  ILE  C
   A  52  PRO  N         123.00   113.75     9.25  1.60e+00  3.35e+01   5.8*sigma
   A 113  LYS  CA
   A 113  LYS  C
   A 114  PRO  N         116.90   125.57    -8.67  1.50e+00  3.34e+01   5.8*sigma
   A  43  HIS  CB
   A  43  HIS  CG
   A  43  HIS  ND1       122.70   114.22     8.48  1.50e+00  3.20e+01   5.7*sigma
   A 101  LYS  CA
   A 101  LYS  C
   A 102  PRO  N         116.90   123.72    -6.82  1.50e+00  2.06e+01   4.5*sigma
   A 100  GLN  C
   A 100  GLN  CA
   A 100  GLN  CB        110.10   101.81     8.29  1.90e+00  1.90e+01   4.4*sigma
   A  15  PHE  CA
   A  15  PHE  CB
   A  15  PHE  CG        113.80   109.48     4.32  1.00e+00  1.86e+01   4.3*sigma
   A 134  HIS  ND1
   A 134  HIS  CG
   A 134  HIS  CD2       106.10   110.40    -4.30  1.00e+00  1.85e+01   4.3*sigma
   A   4  ILE  N
   A   4  ILE  CA
   A   4  ILE  CB        111.50   118.80    -7.30  1.70e+00  1.84e+01   4.3*sigma
   A 136  HIS  ND1
   A 136  HIS  CG
   A 136  HIS  CD2       106.10   110.37    -4.27  1.00e+00  1.83e+01   4.3*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.21    -4.11  1.00e+00  1.69e+01   4.1*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.20    -4.10  1.00e+00  1.68e+01   4.1*sigma
   A 138  HIS  ND1
   A 138  HIS  CG
   A 138  HIS  CD2       106.10   110.18    -4.08  1.00e+00  1.66e+01   4.1*sigma
   A  33  ALA  C
   A  33  ALA  CA
   A  33  ALA  CB        110.50   116.57    -6.07  1.50e+00  1.64e+01   4.0*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   110.13    -4.03  1.00e+00  1.62e+01   4.0*sigma
   A  51  ILE  C
   A  51  ILE  CA
   A  51  ILE  CB        111.60   119.65    -8.05  2.00e+00  1.62e+01   4.0*sigma
   A  21  ARG  CA
   A  21  ARG  C
   A  22  PRO  N         116.90   122.93    -6.03  1.50e+00  1.62e+01   4.0*sigma
   A  47  ASP  N
   A  47  ASP  CA
   A  47  ASP  CB        110.50   103.69     6.81  1.70e+00  1.60e+01   4.0*sigma

  Min. delta:    0.001 (Z=  0.000)
  Max. delta:   12.106 (Z=  8.070)
  Mean delta:    2.278 (Z=  1.299)

                      ----------Dihedral angles----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.027
  Max. delta:   81.240
  Mean delta:   10.539

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.001
  Max. delta:    0.416
  Mean delta:    0.111

                       ----------Planar groups----------                       

  atoms                 rms_deltas   delta_max    residual   deviation
   A  50  TYR  CB
   A  50  TYR  CG
   A  50  TYR  CD1
   A  50  TYR  CD2
   A  50  TYR  CE1
   A  50  TYR  CE2
   A  50  TYR  CZ
   A  50  TYR  OH            0.050       0.089       50.35   4.5*sigma

  Min. delta:    0.000
  Max. delta:    0.059
  Mean delta:    0.013

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  45  PHE  CA
   A  45  PHE  CB
   A  45  PHE  CG        113.80   101.95    11.85  1.00e+00  1.40e+02  11.8*sigma
   A 116  ASP  CA
   A 116  ASP  C
   A 117  PRO  N         116.90   128.24   -11.34  1.50e+00  5.72e+01   7.6*sigma
   A  45  PHE  N
   A  45  PHE  CA
   A  45  PHE  CB        110.50    97.77    12.73  1.70e+00  5.61e+01   7.5*sigma
   A 113  LYS  CA
   A 113  LYS  C
   A 114  PRO  N         116.90   127.03   -10.13  1.50e+00  4.56e+01   6.8*sigma
   A  15  PHE  C
   A  15  PHE  CA
   A  15  PHE  CB        110.10    98.03    12.07  1.90e+00  4.04e+01   6.4*sigma
   A  43  HIS  CA
   A  43  HIS  CB
   A  43  HIS  CG        113.80   119.15    -5.35  1.00e+00  2.86e+01   5.3*sigma
   A  47  ASP  N
   A  47  ASP  CA
   A  47  ASP  CB        110.50   119.24    -8.74  1.70e+00  2.64e+01   5.1*sigma
   A  47  ASP  CA
   A  47  ASP  CB
   A  47  ASP  CG        112.60   117.66    -5.06  1.00e+00  2.56e+01   5.1*sigma
   A  12  TYR  CA
   A  12  TYR  C
   A  12  TYR  O         120.80   112.54     8.26  1.70e+00  2.36e+01   4.9*sigma
   A  76  SER  C
   A  77  ILE  N
   A  77  ILE  CA        121.70   130.17    -8.47  1.80e+00  2.21e+01   4.7*sigma
   A 116  ASP  O
   A 116  ASP  C
   A 117  PRO  N         123.00   115.63     7.37  1.60e+00  2.12e+01   4.6*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   110.68    -4.58  1.00e+00  2.10e+01   4.6*sigma
   A  15  PHE  N
   A  15  PHE  CA
   A  15  PHE  C         111.00   123.71   -12.71  2.80e+00  2.06e+01   4.5*sigma
   A  12  TYR  CA
   A  12  TYR  C
   A  13  SER  N         116.20   125.22    -9.02  2.00e+00  2.03e+01   4.5*sigma
   A 124  ALA  C
   A 125  LYS  N
   A 125  LYS  CA        121.70   129.70    -8.00  1.80e+00  1.97e+01   4.4*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.52    -4.42  1.00e+00  1.96e+01   4.4*sigma
   A  10  LYS  C
   A  10  LYS  CA
   A  10  LYS  CB        110.10   101.72     8.38  1.90e+00  1.95e+01   4.4*sigma
   A 134  HIS  ND1
   A 134  HIS  CG
   A 134  HIS  CD2       106.10   110.49    -4.39  1.00e+00  1.93e+01   4.4*sigma
   A  77  ILE  CA
   A  77  ILE  CB
   A  77  ILE  CG2       110.50   117.95    -7.45  1.70e+00  1.92e+01   4.4*sigma
   A  56  THR  N
   A  56  THR  CA
   A  56  THR  CB        111.50   104.10     7.40  1.70e+00  1.90e+01   4.4*sigma
   A  46  SER  C
   A  47  ASP  N
   A  47  ASP  CA        121.70   129.49    -7.79  1.80e+00  1.87e+01   4.3*sigma
   A 136  HIS  ND1
   A 136  HIS  CG
   A 136  HIS  CD2       106.10   110.42    -4.32  1.00e+00  1.86e+01   4.3*sigma
   A  15  PHE  N
   A  15  PHE  CA
   A  15  PHE  CB        110.50   103.16     7.34  1.70e+00  1.86e+01   4.3*sigma
   A  10  LYS  N
   A  10  LYS  CA
   A  10  LYS  CB        110.50   117.80    -7.30  1.70e+00  1.84e+01   4.3*sigma
   A 101  LYS  CA
   A 101  LYS  C
   A 102  PRO  N         116.90   123.23    -6.33  1.50e+00  1.78e+01   4.2*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.28    -4.18  1.00e+00  1.75e+01   4.2*sigma
   A  14  VAL  CA
   A  14  VAL  CB
   A  14  VAL  CG1       110.40   117.47    -7.07  1.70e+00  1.73e+01   4.2*sigma
   A  43  HIS  C
   A  44  ASP  N
   A  44  ASP  CA        121.70   129.11    -7.41  1.80e+00  1.70e+01   4.1*sigma
   A 139  HIS  ND1
   A 139  HIS  CE1
   A 139  HIS  NE2       108.40   112.48    -4.08  1.00e+00  1.66e+01   4.1*sigma

  Min. delta:    0.009 (Z=  0.006)
  Max. delta:   12.733 (Z= 11.846)
  Mean delta:    2.516 (Z=  1.420)

                      ----------Dihedral angles----------                      

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  80  GLY  CA
   A  80  GLY  C
   A  81  TYR  N
   A  81  TYR  CA        180.00   153.36    26.64  5.00e+00  2.84e+01   5.3*sigma
   A  21  ARG  CA
   A  21  ARG  C
   A  22  PRO  N
   A  22  PRO  CA        180.00   159.12    20.88  5.00e+00  1.74e+01   4.2*sigma

  Min. delta:    0.078
  Max. delta:   85.155
  Mean delta:   10.922

                       ----------Chiral volumes----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.558
  Mean delta:    0.125

                       ----------Planar groups----------                       

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

                       ----------Angle outliers----------                      

   A  97  SER  HA , Angle N-CA-HA, observed: 97.049, delta from target: 12.951
   A  98  SER  HA , Angle N-CA-HA, observed: 96.989, delta from target: 13.011

============================ Molprobity validation ============================

  atoms                 rms_deltas   delta_max    residual   deviation
   A  15  PHE  CB
   A  15  PHE  CG
   A  15  PHE  CD1
   A  15  PHE  CD2
   A  15  PHE  CE1
   A  15  PHE  CE2
   A  15  PHE  CZ            0.208       0.303      758.47  15.2*sigma
   A 111  TYR  CB
   A 111  TYR  CG
   A 111  TYR  CD1
   A 111  TYR  CD2
   A 111  TYR  CE1
   A 111  TYR  CE2
   A 111  TYR  CZ
   A 111  TYR  OH            0.100       0.173      201.36   8.6*sigma
   A  45  PHE  CB
   A  45  PHE  CG
   A  45  PHE  CD1
   A  45  PHE  CD2
   A  45  PHE  CE1
   A  45  PHE  CE2
   A  45  PHE  CZ            0.119       0.169      247.92   8.4*sigma
   A  89  TYR  CB
   A  89  TYR  CG
   A  89  TYR  CD1
   A  89  TYR  CD2
   A  89  TYR  CE1
   A  89  TYR  CE2
   A  89  TYR  CZ
   A  89  TYR  OH            0.062       0.085       78.12   4.2*sigma

  Min. delta:    0.000
  Max. delta:    0.208
  Mean delta:    0.023

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.012   0.055   2241  Z= 0.609
    Angle     :  2.030  13.011   4077  Z= 0.937
    Chirality :  0.111   0.416    176
    Planarity :  0.011   0.086    326
    Dihedral  :  9.758  81.240    768
    Min Nonbonded Distance : 1.688
  
  Molprobity Statistics.
    All-atom Clashscore : 1.80
    Ramachandran Plot:
      Outliers :  2.19 %
      Allowed  : 13.87 %
      Favored  : 83.94 %
    Rotamer:
      Outliers :  0.81 %
      Allowed  :  0.81 %
      Favored  : 98.39 %
    Cbeta Deviations :  2.27 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.00 %
      Twisted Proline : 0.00 %
      Twisted General : 0.00 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -0.26 (0.73), residues: 137
    helix:  2.00 (0.61), residues: 57
    sheet:  None (None), residues: 0
    loop : -1.96 (0.73), residues: 80
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.005   0.002   HIS A 139 
   PHE   0.052   0.010   PHE A  67 
   TYR   0.186   0.028   TYR A  50 
   ARG   0.034   0.008   ARG A  21 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.005   0.002   HIS A 139 
   PHE   0.027   0.008   PHE A  67 
   TYR   0.089   0.024   TYR A  50 
   ARG   0.021   0.004   ARG A  21 

                     ----------Asn/Gln/His flips----------                     

  No backwards Asn/Gln/His sidechains found.

=================================== Summary ===================================

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

                       ----------Angle outliers----------                      

   A  14  VAL  HA , Angle N-CA-HA, observed: 97.540, delta from target: 12.460
   A  10  LYS  HA , Angle N-CA-HA, observed: 94.937, delta from target: 15.063
   A  15  PHE  HA , Angle CB-CA-HA, observed: 126.090, delta from target: -17.090

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.012   0.084   2241  Z= 0.654
    Angle     :  2.190  17.090   4077  Z= 1.014
    Chirality :  0.125   0.558    176
    Planarity :  0.023   0.279    326
    Dihedral  : 10.345  85.155    768
    Min Nonbonded Distance : 1.712
  
  Molprobity Statistics.
    All-atom Clashscore : 5.41
    Ramachandran Plot:
      Outliers :  6.57 %
      Allowed  : 14.60 %
      Favored  : 78.83 %
    Rotamer:
      Outliers :  0.00 %
      Allowed  :  1.61 %
      Favored  : 98.39 %
    Cbeta Deviations :  4.55 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.00 %
      Twisted Proline : 0.00 %
      Twisted General : 0.00 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -0.78 (0.78), residues: 137
    helix:  1.89 (0.64), residues: 58
    sheet:  None (None), residues: 0
    loop : -2.60 (0.79), residues: 79
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.006   0.002   HIS A 139 
   PHE   0.551   0.118   PHE A  15 
   TYR   0.294   0.042   TYR A 111 
   ARG   0.020   0.005   ARG A 129 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.006   0.002   HIS A 139 
   PHE   0.303   0.102   PHE A  15 
   TYR   0.173   0.034   TYR A 111 
   ARG   0.009   0.001   ARG A  58 

                     ----------Asn/Gln/His flips----------                     

  No backwards Asn/Gln/His sidechains found.

=================================== Summary ===================================

  Ramachandran outliers =   6.57 %
                favored =  78.83 %
  Rotamer outliers      =   0.00 %
  C-beta deviations     =     6
  Clashscore            =   5.41
  RMS(bonds)            =   0.0121
  RMS(angles)           =   2.19
  MolProbity score      =   2.04

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py

End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000 (Z=  0.000)
  Max. delta:    0.056 (Z=  3.685)
  Mean delta:    0.016 (Z=  0.880)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 136  HIS  C
   A 137  HIS  N
   A 137  HIS  CA        121.70   136.95   -15.25  1.80e+00  7.18e+01   8.5*sigma
   A 136  HIS  CA
   A 136  HIS  CB
   A 136  HIS  CG        113.80   120.46    -6.66  1.00e+00  4.43e+01   6.7*sigma
   A 134  HIS  C
   A 135  HIS  N
   A 135  HIS  CA        121.70   132.50   -10.80  1.80e+00  3.60e+01   6.0*sigma
   A 113  LYS  CA
   A 113  LYS  C
   A 114  PRO  N         116.90   125.88    -8.98  1.50e+00  3.59e+01   6.0*sigma
   A 135  HIS  CA
   A 135  HIS  CB
   A 135  HIS  CG        113.80   119.58    -5.78  1.00e+00  3.34e+01   5.8*sigma
   A  57  VAL  CA
   A  57  VAL  CB
   A  57  VAL  CG2       110.40   100.70     9.70  1.70e+00  3.26e+01   5.7*sigma
   A 134  HIS  CA
   A 134  HIS  CB
   A 134  HIS  CG        113.80   119.27    -5.47  1.00e+00  2.99e+01   5.5*sigma
   A 134  HIS  O
   A 134  HIS  C
   A 135  HIS  N         123.00   114.46     8.54  1.60e+00  2.85e+01   5.3*sigma
   A 136  HIS  N
   A 136  HIS  CA
   A 136  HIS  CB        110.50   119.41    -8.91  1.70e+00  2.75e+01   5.2*sigma
   A  29  ASP  CA
   A  29  ASP  CB
   A  29  ASP  CG        112.60   117.81    -5.21  1.00e+00  2.71e+01   5.2*sigma
   A 134  HIS  CA
   A 134  HIS  C
   A 135  HIS  N         116.20   126.25   -10.05  2.00e+00  2.53e+01   5.0*sigma
   A  57  VAL  CG1
   A  57  VAL  CB
   A  57  VAL  CG2       110.80   121.75   -10.95  2.20e+00  2.48e+01   5.0*sigma
   A 130  SER  C
   A 131  ILE  N
   A 131  ILE  CA        121.70   130.59    -8.89  1.80e+00  2.44e+01   4.9*sigma
   A 113  LYS  O
   A 113  LYS  C
   A 114  PRO  N         123.00   115.32     7.68  1.60e+00  2.31e+01   4.8*sigma
   A 137  HIS  N
   A 137  HIS  CA
   A 137  HIS  CB        110.50   118.38    -7.88  1.70e+00  2.15e+01   4.6*sigma
   A 138  HIS  ND1
   A 138  HIS  CG
   A 138  HIS  CD2       106.10   110.69    -4.59  1.00e+00  2.11e+01   4.6*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.69    -4.59  1.00e+00  2.11e+01   4.6*sigma
   A 130  SER  O
   A 130  SER  C
   A 131  ILE  N         123.00   115.74     7.26  1.60e+00  2.06e+01   4.5*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.63    -4.53  1.00e+00  2.05e+01   4.5*sigma
   A 135  HIS  N
   A 135  HIS  CA
   A 135  HIS  CB        110.50   118.15    -7.65  1.70e+00  2.03e+01   4.5*sigma
   A 137  HIS  CA
   A 137  HIS  CB
   A 137  HIS  CG        113.80   118.27    -4.47  1.00e+00  2.00e+01   4.5*sigma
   A  90  SER  CA
   A  90  SER  CB
   A  90  SER  OG        111.10   119.83    -8.73  2.00e+00  1.91e+01   4.4*sigma
   A 128  MET  CA
   A 128  MET  CB
   A 128  MET  CG        114.10   122.78    -8.68  2.00e+00  1.88e+01   4.3*sigma
   A  43  HIS  ND1
   A  43  HIS  CG
   A  43  HIS  CD2       106.10   110.41    -4.31  1.00e+00  1.85e+01   4.3*sigma
   A  43  HIS  CB
   A  43  HIS  CG
   A  43  HIS  ND1       122.70   116.29     6.41  1.50e+00  1.83e+01   4.3*sigma
   A 111  TYR  CA
   A 111  TYR  CB
   A 111  TYR  CG        113.90   106.28     7.62  1.80e+00  1.79e+01   4.2*sigma
   A  21  ARG  CA
   A  21  ARG  C
   A  22  PRO  N         116.90   123.14    -6.24  1.50e+00  1.73e+01   4.2*sigma
   A 136  HIS  CB
   A 136  HIS  CG
   A 136  HIS  ND1       122.70   116.55     6.15  1.50e+00  1.68e+01   4.1*sigma
   A 137  HIS  C
   A 137  HIS  CA
   A 137  HIS  CB        110.10   102.31     7.79  1.90e+00  1.68e+01   4.1*sigma
   A 139  HIS  ND1
   A 139  HIS  CE1
   A 139  HIS  NE2       108.40   112.48    -4.08  1.00e+00  1.66e+01   4.1*sigma
   A 135  HIS  CB
   A 135  HIS  CG
   A 135  HIS  CD2       131.20   125.99     5.21  1.30e+00  1.61e+01   4.0*sigma

  Min. delta:    0.001 (Z=  0.001)
  Max. delta:   15.248 (Z=  8.471)
  Mean delta:    2.417 (Z=  1.377)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 130  SER  CA
   A 130  SER  C
   A 131  ILE  N
   A 131  ILE  CA        180.00    63.78   116.22  5.00e+00  5.40e+02  23.2*sigma
   A 134  HIS  CA
   A 134  HIS  C
   A 135  HIS  N
   A 135  HIS  CA          0.00    35.11   -35.11  5.00e+00  4.93e+01   7.0*sigma
   A 137  HIS  CA
   A 137  HIS  C
   A 138  HIS  N
   A 138  HIS  CA        180.00   154.03    25.97  5.00e+00  2.70e+01   5.2*sigma
   A 133  GLU  CA
   A 133  GLU  C
   A 134  HIS  N
   A 134  HIS  CA        180.00   155.12    24.88  5.00e+00  2.48e+01   5.0*sigma
   A 138  HIS  CA
   A 138  HIS  C
   A 139  HIS  N
   A 139  HIS  CA        180.00   159.55    20.45  5.00e+00  1.67e+01   4.1*sigma

  Min. delta:    0.023
  Max. delta:  116.221
  Mean delta:   12.003

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.558
  Mean delta:    0.103

                       ----------Planar groups----------                       

  atoms                 rms_deltas   delta_max    residual   deviation
   A  45  PHE  CB
   A  45  PHE  CG
   A  45  PHE  CD1
   A  45  PHE  CD2
   A  45  PHE  CE1
   A  45  PHE  CE2
   A  45  PHE  CZ            0.160       0.253      445.68  12.7*sigma
   A 137  HIS  CB
   A 137  HIS  CG
   A 137  HIS  ND1
   A 137  HIS  CD2
   A 137  HIS  CE1
   A 137  HIS  NE2           0.075       0.101       83.69   5.0*sigma
   A 111  TYR  CB
   A 111  TYR  CG
   A 111  TYR  CD1
   A 111  TYR  CD2
   A 111  TYR  CE1
   A 111  TYR  CE2
   A 111  TYR  CZ
   A 111  TYR  OH            0.099       0.092      197.39   4.6*sigma
   A 135  HIS  CB
   A 135  HIS  CG
   A 135  HIS  ND1
   A 135  HIS  CD2
   A 135  HIS  CE1
   A 135  HIS  NE2           0.066       0.089       65.85   4.4*sigma
   A  91  TYR  CB
   A  91  TYR  CG
   A  91  TYR  CD1
   A  91  TYR  CD2
   A  91  TYR  CE1
   A  91  TYR  CE2
   A  91  TYR  CZ
   A  91  TYR  OH            0.045       0.084       39.61   4.2*sigma

  Min. delta:    0.000
  Max. delta:    0.160
  Mean delta:    0.020

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

                       ----------Angle outliers----------                      

   A  57  VAL  HB , Angle CA-CB-HB, observed: 121.868, delta from target: -12.868

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.012   0.056   2241  Z= 0.627
    Angle     :  2.110  15.248   4077  Z= 0.983
    Chirality :  0.103   0.558    176
    Planarity :  0.018   0.239    326
    Dihedral  : 10.509 116.221    768
    Min Nonbonded Distance : 1.737
  
  Molprobity Statistics.
    All-atom Clashscore : 4.51
    Ramachandran Plot:
      Outliers :  5.84 %
      Allowed  :  5.84 %
      Favored  : 88.32 %
    Rotamer:
      Outliers :  0.81 %
      Allowed  :  1.61 %
      Favored  : 97.58 %
    Cbeta Deviations :  2.27 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 1.53 %
      Twisted Proline : 0.00 %
      Twisted General : 1.53 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole:  0.37 (0.76), residues: 137
    helix:  1.49 (0.61), residues: 71
    sheet:  1.33 (1.77), residues: 10
    loop : -1.68 (0.93), residues: 56
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.008   0.003   HIS A  43 
   PHE   0.505   0.068   PHE A  45 
   TYR   0.225   0.028   TYR A 111 
   ARG   0.027   0.005   ARG A  58 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.008   0.003   HIS A  43 
   PHE   0.253   0.055   PHE A  45 
   TYR   0.180   0.027   TYR A 111 
   ARG   0.011   0.002   ARG A  58 

                     ----------Asn/Gln/His flips----------                     

   A 100  GLN
   A 137  HIS

=================================== Summary ===================================

  Ramachandran outliers =   2.19 %
                favored =  83.94 %
  Rotamer outliers      =   0.81 %
  C-beta deviations     =     3
  Clashscore            =   1.80
  RMS(bonds)            =   0.0116
  RMS(angles)           =   2.03
  MolProbity score      =   1.62

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py

  Symmetric amino acids flipped
    Residue "A TYR   12": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   32": "OE1" <-> "OE2"
    Residue "A ASP   44": "OD1" <-> "OD2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A TYR   68": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR   81": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR   89": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR   91": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ASP   95": "OD1" <-> "OD2"
    Residue "A ASP  103": "OD1" <-> "OD2"
    Residue "A TYR  111": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU  120": "OE1" <-> "OE2"
    Residue "A GLU  123": "OE1" <-> "OE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU  133": "OE1" <-> "OE2"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""
  Ramachandran outliers =   5.84 %
                favored =  88.32 %
  Rotamer outliers      =   0.81 %
  C-beta deviations     =     3
  Clashscore            =   4.51
  RMS(bonds)            =   0.0116
  RMS(angles)           =   2.11
  MolProbity score      =   1.82

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py

End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000 (Z=  0.001)
  Max. delta:    0.072 (Z=  3.599)
  Mean delta:    0.016 (Z=  0.823)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  72  ASN  CA
   A  72  ASN  CB
   A  72  ASN  CG        112.60   120.82    -8.22  1.00e+00  6.76e+01   8.2*sigma
   A 116  ASP  CA
   A 116  ASP  C
   A 117  PRO  N         116.90   127.28   -10.38  1.50e+00  4.79e+01   6.9*sigma
   A  73  GLY  C
   A  74  ASP  N
   A  74  ASP  CA        121.70   133.71   -12.01  1.80e+00  4.45e+01   6.7*sigma
   A  32  GLU  CB
   A  32  GLU  CG
   A  32  GLU  CD        112.60   123.36   -10.76  1.70e+00  4.01e+01   6.3*sigma
   A  51  ILE  CA
   A  51  ILE  C
   A  52  PRO  N         116.90   126.26    -9.36  1.50e+00  3.89e+01   6.2*sigma
   A  99  LEU  N
   A  99  LEU  CA
   A  99  LEU  CB        110.50   100.29    10.21  1.70e+00  3.61e+01   6.0*sigma
   A  97  SER  N
   A  97  SER  CA
   A  97  SER  CB        110.50   120.31    -9.81  1.70e+00  3.33e+01   5.8*sigma
   A  45  PHE  C
   A  46  SER  N
   A  46  SER  CA        121.70   130.66    -8.96  1.80e+00  2.48e+01   5.0*sigma
   A  88  ASP  CA
   A  88  ASP  CB
   A  88  ASP  CG        112.60   107.67     4.93  1.00e+00  2.43e+01   4.9*sigma
   A  53  LEU  CA
   A  53  LEU  C
   A  54  PRO  N         116.90   124.14    -7.24  1.50e+00  2.33e+01   4.8*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.71    -4.61  1.00e+00  2.13e+01   4.6*sigma
   A 116  ASP  O
   A 116  ASP  C
   A 117  PRO  N         123.00   115.63     7.37  1.60e+00  2.12e+01   4.6*sigma
   A 101  LYS  CA
   A 101  LYS  C
   A 102  PRO  N         116.90   123.78    -6.88  1.50e+00  2.10e+01   4.6*sigma
   A 134  HIS  ND1
   A 134  HIS  CG
   A 134  HIS  CD2       106.10   110.62    -4.52  1.00e+00  2.04e+01   4.5*sigma
   A  45  PHE  CA
   A  45  PHE  CB
   A  45  PHE  CG        113.80   109.30     4.50  1.00e+00  2.02e+01   4.5*sigma
   A  36  ASP  CA
   A  36  ASP  CB
   A  36  ASP  CG        112.60   108.15     4.45  1.00e+00  1.98e+01   4.4*sigma
   A  96  GLY  C
   A  97  SER  N
   A  97  SER  CA        121.70   129.70    -8.00  1.80e+00  1.98e+01   4.4*sigma
   A  77  ILE  CB
   A  77  ILE  CG1
   A  77  ILE  CD1       113.80   123.12    -9.32  2.10e+00  1.97e+01   4.4*sigma
   A  43  HIS  ND1
   A  43  HIS  CG
   A  43  HIS  CD2       106.10   110.45    -4.35  1.00e+00  1.89e+01   4.4*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.43    -4.33  1.00e+00  1.87e+01   4.3*sigma
   A   7  ASP  CA
   A   7  ASP  CB
   A   7  ASP  CG        112.60   108.45     4.15  1.00e+00  1.72e+01   4.1*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   110.23    -4.13  1.00e+00  1.70e+01   4.1*sigma
   A 136  HIS  ND1
   A 136  HIS  CG
   A 136  HIS  CD2       106.10   110.22    -4.12  1.00e+00  1.70e+01   4.1*sigma
   A 138  HIS  ND1
   A 138  HIS  CG
   A 138  HIS  CD2       106.10   110.21    -4.11  1.00e+00  1.69e+01   4.1*sigma
   A  77  ILE  CA
   A  77  ILE  CB
   A  77  ILE  CG2       110.50   117.48    -6.98  1.70e+00  1.69e+01   4.1*sigma

  Min. delta:    0.002 (Z=  0.001)
  Max. delta:   12.010 (Z=  8.220)
  Mean delta:    2.493 (Z=  1.370)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 117  PRO  CA
   A 117  PRO  C
   A 118  ASP  N
   A 118  ASP  CA        180.00   151.09    28.91  5.00e+00  3.34e+01   5.8*sigma
   A 129  ARG  CA
   A 129  ARG  C
   A 130  SER  N
   A 130  SER  CA        180.00   159.85    20.15  5.00e+00  1.62e+01   4.0*sigma

  Min. delta:    0.009
  Max. delta:   81.483
  Mean delta:   11.457

                       ----------Chiral volumes----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  88  ASP  CA
   A  88  ASP  N
   A  88  ASP  C
   A  88  ASP  CB          2.51     1.50     1.01  2.00e-01  2.56e+01   5.1*sigma

  Min. delta:    0.000
  Max. delta:    1.012
  Mean delta:    0.150

                       ----------Planar groups----------                       

  atoms                 rms_deltas   delta_max    residual   deviation
   A 111  TYR  CB
   A 111  TYR  CG
   A 111  TYR  CD1
   A 111  TYR  CD2
   A 111  TYR  CE1
   A 111  TYR  CE2
   A 111  TYR  CZ
   A 111  TYR  OH            0.052       0.098       55.03   4.9*sigma
   A  68  TYR  CB
   A  68  TYR  CG
   A  68  TYR  CD1
   A  68  TYR  CD2
   A  68  TYR  CE1
   A  68  TYR  CE2
   A  68  TYR  CZ
   A  68  TYR  OH            0.064       0.090       82.48   4.5*sigma
   A 105  TYR  CB
   A 105  TYR  CG
   A 105  TYR  CD1
   A 105  TYR  CD2
   A 105  TYR  CE1
   A 105  TYR  CE2
   A 105  TYR  CZ
   A 105  TYR  OH            0.046       0.087       41.84   4.3*sigma
   A  50  TYR  CB
   A  50  TYR  CG
   A  50  TYR  CD1
   A  50  TYR  CD2
   A  50  TYR  CE1
   A  50  TYR  CE2
   A  50  TYR  CZ
   A  50  TYR  OH            0.045       0.082       40.80   4.1*sigma

  Min. delta:    0.000
  Max. delta:    0.064
  Mean delta:    0.016

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

                       ----------Angle outliers----------                      

   A  93  LEU  HG , Angle CB-CG-HG, observed: 96.491, delta from target: 12.509
   A  99  LEU  HG , Angle CD1-CG-HG, observed: 120.574, delta from target: -12.574
   A  97  SER  HA , Angle N-CA-HA, observed: 95.545, delta from target: 14.455

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.011   0.072   2241  Z= 0.586
    Angle     :  2.182  14.455   4077  Z= 0.988
    Chirality :  0.150   1.012    176
    Planarity :  0.014   0.103    326
    Dihedral  : 10.380  81.483    768
    Min Nonbonded Distance : 1.658
  
  Molprobity Statistics.
    All-atom Clashscore : 7.22
    Ramachandran Plot:
      Outliers :  6.57 %
      Allowed  :  9.49 %
      Favored  : 83.94 %
    Rotamer:
      Outliers :  0.81 %
      Allowed  :  0.81 %
      Favored  : 98.39 %
    Cbeta Deviations :  5.30 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.76 %
      Twisted Proline : 0.00 %
      Twisted General : 0.00 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -0.74 (0.72), residues: 137
    helix:  1.73 (0.74), residues: 46
    sheet:  0.54 (1.30), residues: 12
    loop : -2.19 (0.70), residues: 79
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.006   0.002   HIS A  43 
   PHE   0.168   0.037   PHE A  45 
   TYR   0.220   0.036   TYR A  68 
   ARG   0.047   0.012   ARG A  21 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.006   0.002   HIS A  43 
   PHE   0.084   0.027   PHE A  45 
   TYR   0.110   0.029   TYR A  68 
   ARG   0.022   0.006   ARG A 127 

                     ----------Asn/Gln/His flips----------                     

  No backwards Asn/Gln/His sidechains found.

=================================== Summary ===================================


  Symmetric amino acids flipped
    Residue "A GLU   16": "OE1" <-> "OE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   24": "OE1" <-> "OE2"
    Residue "A GLU   55": "OE1" <-> "OE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A PHE   67": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU   75": "OE1" <-> "OE2"
    Residue "A TYR   81": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR   89": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU  120": "OE1" <-> "OE2"
    Residue "A GLU  123": "OE1" <-> "OE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU  133": "OE1" <-> "OE2"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""

  Symmetric amino acids flipped
    Residue "A TYR   12": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A GLU   16": "OE1" <-> "OE2"
    Residue "A ARG   21": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A GLU   24": "OE1" <-> "OE2"
    Residue "A ARG   58": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A PHE   67": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ASP   74": "OD1" <-> "OD2"
    Residue "A GLU   84": "OE1" <-> "OE2"
    Residue "A TYR  105": "CD1" <-> "CD2" "CE1" <-> "CE2" "HD1" <-> "HD2" "HE1" <-> "HE2"
    Residue "A ASP  116": "OD1" <-> "OD2"
    Residue "A ASP  118": "OD1" <-> "OD2"
    Residue "A GLU  120": "OE1" <-> "OE2"
    Residue "A GLU  123": "OE1" <-> "OE2"
    Residue "A ARG  127": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
    Residue "A ARG  129": "NH1" <-> "NH2" "HH11" <-> "HH21" "HH12" <-> "HH22"
  Time to flip residues: 0.00s

  Monomer Library directory:
    "/usr/local/phenix-1.21.1-5286/modules/chem_data/mon_lib"
  Total number of atoms: 2217
  Number of models: 1
  Model: "   1"
    Number of chains: 1
    Chain: "A"
      Number of atoms: 2217
      Number of conformers: 1
      Conformer: ""
  Time building chain proxies: 0.98, per 1000 atoms: 0.44
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (74.739, 75.832, 62.124, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.

End of input processing

=============================== Model properties ==============================


End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000 (Z=  0.002)
  Max. delta:    0.063 (Z=  3.625)
  Mean delta:    0.016 (Z=  0.865)

                        ----------Bond angles----------                        

  atoms                 ideal   model   delta   sigma   slack  residual   deviation
   A  78  ILE  CA
   A  78  ILE  C           1.52     1.41     0.12  2.10e-02  3.20e+01   5.7*sigma

  Min. delta:    0.000 (Z=  0.000)
  Max. delta:    0.119 (Z=  5.661)
  Mean delta:    0.017 (Z=  0.900)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  46  SER  N
   A  46  SER  CA
   A  46  SER  CB        110.50   122.12   -11.62  1.70e+00  4.67e+01   6.8*sigma
   A 116  ASP  CA
   A 116  ASP  CB
   A 116  ASP  CG        112.60   106.81     5.79  1.00e+00  3.35e+01   5.8*sigma
   A   2  LEU  CB
   A   2  LEU  CG
   A   2  LEU  CD1       110.70   126.39   -15.69  3.00e+00  2.73e+01   5.2*sigma
   A  36  ASP  CA
   A  36  ASP  CB
   A  36  ASP  CG        112.60   107.65     4.95  1.00e+00  2.45e+01   5.0*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   110.84    -4.74  1.00e+00  2.24e+01   4.7*sigma
   A 113  LYS  CA
   A 113  LYS  C
   A 114  PRO  N         116.90   124.00    -7.10  1.50e+00  2.24e+01   4.7*sigma
   A 130  SER  N
   A 130  SER  CA
   A 130  SER  CB        110.50   118.41    -7.91  1.70e+00  2.16e+01   4.7*sigma
   A 104  VAL  CA
   A 104  VAL  CB
   A 104  VAL  CG2       110.40   102.72     7.68  1.70e+00  2.04e+01   4.5*sigma
   A   2  LEU  CD1
   A   2  LEU  CG
   A   2  LEU  CD2       110.80   100.95     9.85  2.20e+00  2.01e+01   4.5*sigma
   A 104  VAL  C
   A 104  VAL  CA
   A 104  VAL  CB        111.40   102.99     8.41  1.90e+00  1.96e+01   4.4*sigma
   A 136  HIS  ND1
   A 136  HIS  CG
   A 136  HIS  CD2       106.10   110.51    -4.41  1.00e+00  1.95e+01   4.4*sigma
   A  30  ILE  CA
   A  30  ILE  CB
   A  30  ILE  CG1       110.40   117.69    -7.29  1.70e+00  1.84e+01   4.3*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.33    -4.23  1.00e+00  1.79e+01   4.2*sigma
   A  97  SER  C
   A  98  SER  N
   A  98  SER  CA        121.70   129.30    -7.60  1.80e+00  1.78e+01   4.2*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.27    -4.17  1.00e+00  1.74e+01   4.2*sigma
   A 134  HIS  ND1
   A 134  HIS  CG
   A 134  HIS  CD2       106.10   110.23    -4.13  1.00e+00  1.71e+01   4.1*sigma
   A 101  LYS  CA
   A 101  LYS  C
   A 102  PRO  N         116.90   123.01    -6.11  1.50e+00  1.66e+01   4.1*sigma

  Min. delta:    0.003 (Z=  0.002)
  Max. delta:   15.686 (Z=  6.835)
  Mean delta:    2.271 (Z=  1.250)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  95  ASP  CA
   A  95  ASP  C
   A  96  GLY  N
   A  96  GLY  CA        180.00   158.77    21.23  5.00e+00  1.80e+01   4.2*sigma
   A 119  LEU  CA
   A 119  LEU  C
   A 120  GLU  N
   A 120  GLU  CA        180.00   159.34    20.66  5.00e+00  1.71e+01   4.1*sigma

  Min. delta:    0.017
  Max. delta:   62.782
  Mean delta:   10.044

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.001
  Max. delta:    0.451
  Mean delta:    0.116

                       ----------Planar groups----------                       

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  78  ILE  CA
   A  78  ILE  CB
   A  78  ILE  CG2       110.50   124.08   -13.58  1.70e+00  6.38e+01   8.0*sigma
   A  16  GLU  CB
   A  16  GLU  CG
   A  16  GLU  CD        112.60   125.47   -12.87  1.70e+00  5.73e+01   7.6*sigma
   A  78  ILE  N
   A  78  ILE  CA
   A  78  ILE  CB        111.50   122.24   -10.74  1.70e+00  3.99e+01   6.3*sigma
   A   1  MET  CA
   A   1  MET  C
   A   2  LEU  N         116.20   128.74   -12.54  2.00e+00  3.93e+01   6.3*sigma
   A 137  HIS  CA
   A 137  HIS  CB
   A 137  HIS  CG        113.80   120.01    -6.21  1.00e+00  3.86e+01   6.2*sigma
   A  78  ILE  CA
   A  78  ILE  CB
   A  78  ILE  CG1       110.40   100.21    10.19  1.70e+00  3.59e+01   6.0*sigma
   A 115  ALA  C
   A 115  ALA  CA
   A 115  ALA  CB        110.50   101.64     8.86  1.50e+00  3.49e+01   5.9*sigma
   A 134  HIS  O
   A 134  HIS  C
   A 135  HIS  N         123.00   113.89     9.11  1.60e+00  3.24e+01   5.7*sigma
   A  71  ILE  C
   A  71  ILE  CA
   A  71  ILE  CB        111.60   122.15   -10.55  2.00e+00  2.78e+01   5.3*sigma
   A  78  ILE  C
   A  78  ILE  CA
   A  78  ILE  CB        111.60   101.31    10.29  2.00e+00  2.65e+01   5.1*sigma
   A 139  HIS  CA
   A 139  HIS  CB
   A 139  HIS  CG        113.80   118.80    -5.00  1.00e+00  2.50e+01   5.0*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   110.92    -4.82  1.00e+00  2.33e+01   4.8*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.87    -4.77  1.00e+00  2.27e+01   4.8*sigma
   A 135  HIS  CA
   A 135  HIS  CB
   A 135  HIS  CG        113.80   118.41    -4.61  1.00e+00  2.13e+01   4.6*sigma
   A 136  HIS  ND1
   A 136  HIS  CG
   A 136  HIS  CD2       106.10   110.71    -4.61  1.00e+00  2.12e+01   4.6*sigma
   A  62  LEU  N
   A  62  LEU  CA
   A  62  LEU  CB        110.50   102.75     7.75  1.70e+00  2.08e+01   4.6*sigma
   A 138  HIS  ND1
   A 138  HIS  CG
   A 138  HIS  CD2       106.10   110.62    -4.52  1.00e+00  2.04e+01   4.5*sigma
   A  98  SER  C
   A  99  LEU  N
   A  99  LEU  CA        121.70   129.76    -8.06  1.80e+00  2.00e+01   4.5*sigma
   A 135  HIS  C
   A 135  HIS  CA
   A 135  HIS  CB        110.10   101.71     8.39  1.90e+00  1.95e+01   4.4*sigma
   A  21  ARG  CA
   A  21  ARG  C
   A  22  PRO  N         116.90   123.39    -6.49  1.50e+00  1.87e+01   4.3*sigma
   A 113  LYS  CA
   A 113  LYS  C
   A 114  PRO  N         116.90   123.32    -6.42  1.50e+00  1.83e+01   4.3*sigma
   A 138  HIS  C
   A 139  HIS  N
   A 139  HIS  CA        121.70   129.32    -7.62  1.80e+00  1.79e+01   4.2*sigma
   A  51  ILE  CA
   A  51  ILE  C
   A  52  PRO  N         116.90   123.17    -6.27  1.50e+00  1.75e+01   4.2*sigma
   A  71  ILE  CA
   A  71  ILE  C
   A  72  ASN  N         116.20   124.53    -8.33  2.00e+00  1.73e+01   4.2*sigma
   A  71  ILE  N
   A  71  ILE  CA
   A  71  ILE  CB        111.50   118.58    -7.08  1.70e+00  1.73e+01   4.2*sigma
   A  43  HIS  ND1
   A  43  HIS  CG
   A  43  HIS  CD2       106.10   110.25    -4.15  1.00e+00  1.72e+01   4.2*sigma
   A  78  ILE  CB
   A  78  ILE  CG1
   A  78  ILE  CD1       113.80   105.21     8.59  2.10e+00  1.67e+01   4.1*sigma
   A   1  MET  CA
   A   1  MET  C
   A   1  MET  O         120.80   113.90     6.90  1.70e+00  1.65e+01   4.1*sigma

  Min. delta:    0.003 (Z=  0.002)
  Max. delta:   13.581 (Z=  7.989)
  Mean delta:    2.425 (Z=  1.348)

                      ----------Dihedral angles----------                      

  atoms                 rms_deltas   delta_max    residual   deviation
   A 111  TYR  CB
   A 111  TYR  CG
   A 111  TYR  CD1
   A 111  TYR  CD2
   A 111  TYR  CE1
   A 111  TYR  CE2
   A 111  TYR  CZ
   A 111  TYR  OH            0.055       0.099       60.70   5.0*sigma
   A  67  PHE  CB
   A  67  PHE  CG
   A  67  PHE  CD1
   A  67  PHE  CD2
   A  67  PHE  CE1
   A  67  PHE  CE2
   A  67  PHE  CZ            0.076       0.099      101.74   5.0*sigma

  Min. delta:    0.000
  Max. delta:    0.076
  Mean delta:    0.014

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 134  HIS  CA
   A 134  HIS  C
   A 135  HIS  N
   A 135  HIS  CA        180.00    68.10   111.90  5.00e+00  5.01e+02  22.4*sigma
   A 133  GLU  CA
   A 133  GLU  C
   A 134  HIS  N
   A 134  HIS  CA        180.00   133.74    46.26  5.00e+00  8.56e+01   9.3*sigma
   A 137  HIS  CA
   A 137  HIS  C
   A 138  HIS  N
   A 138  HIS  CA        180.00   144.21    35.79  5.00e+00  5.12e+01   7.2*sigma
   A  96  GLY  CA
   A  96  GLY  C
   A  97  SER  N
   A  97  SER  CA        180.00   156.91    23.09  5.00e+00  2.13e+01   4.6*sigma
   A 138  HIS  CA
   A 138  HIS  C
   A 139  HIS  N
   A 139  HIS  CA        180.00   158.75    21.25  5.00e+00  1.81e+01   4.3*sigma
   A 136  HIS  CA
   A 136  HIS  C
   A 137  HIS  N
   A 137  HIS  CA        180.00   159.94    20.06  5.00e+00  1.61e+01   4.0*sigma

  Min. delta:    0.011
  Max. delta:  111.905
  Mean delta:   12.393

                       ----------Chiral volumes----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  71  ILE  CA
   A  71  ILE  N
   A  71  ILE  C
   A  71  ILE  CB          2.43     1.61     0.82  2.00e-01  1.69e+01   4.1*sigma

  Min. delta:    0.000
  Max. delta:    0.823
  Mean delta:    0.120

                       ----------Planar groups----------                       

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

                       ----------Angle outliers----------                      

   A 130  SER  HA , Angle N-CA-HA, observed: 97.894, delta from target: 12.106
   A  46  SER  HA , Angle N-CA-HA, observed: 96.287, delta from target: 13.713
   A   2  LEU  HG , Angle CD2-CG-HG, observed: 122.324, delta from target: -14.324
   A   2  LEU  HG , Angle CB-CG-HG, observed: 93.417, delta from target: 15.583

============================ Molprobity validation ============================

  atoms                 rms_deltas   delta_max    residual   deviation
   A  12  TYR  CB
   A  12  TYR  CG
   A  12  TYR  CD1
   A  12  TYR  CD2
   A  12  TYR  CE1
   A  12  TYR  CE2
   A  12  TYR  CZ
   A  12  TYR  OH            0.061       0.120       75.23   6.0*sigma
   A 135  HIS  CB
   A 135  HIS  CG
   A 135  HIS  ND1
   A 135  HIS  CD2
   A 135  HIS  CE1
   A 135  HIS  NE2           0.071       0.103       75.77   5.2*sigma
   A  15  PHE  CB
   A  15  PHE  CG
   A  15  PHE  CD1
   A  15  PHE  CD2
   A  15  PHE  CE1
   A  15  PHE  CE2
   A  15  PHE  CZ            0.054       0.082       50.89   4.1*sigma

  Min. delta:    0.000
  Max. delta:    0.071
  Mean delta:    0.014

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.012   0.063   2241  Z= 0.616
    Angle     :  2.072  15.686   4077  Z= 0.922
    Chirality :  0.116   0.451    176
    Planarity :  0.012   0.100    326
    Dihedral  :  9.309  62.782    768
    Min Nonbonded Distance : 1.716
  
  Molprobity Statistics.
    All-atom Clashscore : 2.71
    Ramachandran Plot:
      Outliers :  5.84 %
      Allowed  : 11.68 %
      Favored  : 82.48 %
    Rotamer:
      Outliers :  0.81 %
      Allowed  :  0.00 %
      Favored  : 99.19 %
    Cbeta Deviations :  1.52 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.00 %
      Twisted Proline : 0.00 %
      Twisted General : 0.00 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -1.01 (0.69), residues: 137
    helix:  0.94 (0.60), residues: 65
    sheet:  None (None), residues: 0
    loop : -2.35 (0.68), residues: 72
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.005   0.002   HIS A 139 
   PHE   0.182   0.041   PHE A  67 
   TYR   0.163   0.025   TYR A 111 
   ARG   0.049   0.013   ARG A  21 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.005   0.002   HIS A 139 
   PHE   0.115   0.038   PHE A  67 
   TYR   0.099   0.021   TYR A 111 
   ARG   0.026   0.007   ARG A  21 

                     ----------Asn/Gln/His flips----------                     

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

  No backwards Asn/Gln/His sidechains found.

=================================== Summary ===================================

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

                       ----------Angle outliers----------                      

   A 134  HIS  HA , Angle C-CA-HA, observed: 96.583, delta from target: 12.417
   A  78  ILE  HA , Angle C-CA-HA, observed: 122.797, delta from target: -13.797
   A  78  ILE  HB , Angle CG1-CB-HB, observed: 126.000, delta from target: -17.000
   A  71  ILE  HA , Angle CB-CA-HA, observed: 88.973, delta from target: 20.027

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.012   0.119   2241  Z= 0.640
    Angle     :  2.154  20.027   4077  Z= 0.977
    Chirality :  0.120   0.823    176
    Planarity :  0.011   0.070    326
    Dihedral  : 10.540 111.905    768
    Min Nonbonded Distance : 1.522
  
  Molprobity Statistics.
    All-atom Clashscore : 13.98
    Ramachandran Plot:
      Outliers :  7.30 %
      Allowed  : 14.60 %
      Favored  : 78.10 %
    Rotamer:
      Outliers :  2.42 %
      Allowed  :  2.42 %
      Favored  : 95.16 %
    Cbeta Deviations :  2.27 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.00 %
      Twisted Proline : 0.00 %
      Twisted General : 2.29 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -1.69 (0.72), residues: 137
    helix:  1.19 (0.63), residues: 59
    sheet:  None (None), residues: 0
    loop : -3.22 (0.69), residues: 78
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.006   0.002   HIS A 137 
   PHE   0.143   0.028   PHE A  15 
   TYR   0.138   0.019   TYR A  12 
   ARG   0.030   0.008   ARG A  58 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.006   0.002   HIS A 137 
   PHE   0.082   0.022   PHE A  15 
   TYR   0.120   0.018   TYR A  12 
   ARG   0.019   0.004   ARG A  58 

                     ----------Asn/Gln/His flips----------                     

  No backwards Asn/Gln/His sidechains found.

=================================== Summary ===================================


End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000 (Z=  0.000)
  Max. delta:    0.065 (Z=  3.528)
  Mean delta:    0.016 (Z=  0.866)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 101  LYS  CA
   A 101  LYS  C
   A 102  PRO  N         116.90   127.72   -10.82  1.50e+00  5.20e+01   7.2*sigma
   A 123  GLU  CB
   A 123  GLU  CG
   A 123  GLU  CD        112.60   122.99   -10.39  1.70e+00  3.74e+01   6.1*sigma
   A 123  GLU  C
   A 123  GLU  CA
   A 123  GLU  CB        110.10   121.44   -11.34  1.90e+00  3.56e+01   6.0*sigma
   A  51  ILE  CA
   A  51  ILE  C
   A  52  PRO  N         116.90   124.81    -7.91  1.50e+00  2.78e+01   5.3*sigma
   A 122  ILE  C
   A 122  ILE  CA
   A 122  ILE  CB        111.60   101.98     9.62  2.00e+00  2.31e+01   4.8*sigma
   A  98  SER  N
   A  98  SER  CA
   A  98  SER  CB        110.50   118.50    -8.00  1.70e+00  2.22e+01   4.7*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   110.76    -4.66  1.00e+00  2.17e+01   4.7*sigma
   A   8  GLU  CB
   A   8  GLU  CG
   A   8  GLU  CD        112.60   104.90     7.70  1.70e+00  2.05e+01   4.5*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.60    -4.50  1.00e+00  2.02e+01   4.5*sigma
   A 134  HIS  ND1
   A 134  HIS  CG
   A 134  HIS  CD2       106.10   110.59    -4.49  1.00e+00  2.02e+01   4.5*sigma
   A 138  HIS  ND1
   A 138  HIS  CG
   A 138  HIS  CD2       106.10   110.54    -4.44  1.00e+00  1.97e+01   4.4*sigma
   A 136  HIS  ND1
   A 136  HIS  CG
   A 136  HIS  CD2       106.10   110.52    -4.42  1.00e+00  1.95e+01   4.4*sigma
   A  20  THR  CA
   A  20  THR  CB
   A  20  THR  CG2       110.50   117.72    -7.22  1.70e+00  1.80e+01   4.2*sigma
   A 135  HIS  CB
   A 135  HIS  CG
   A 135  HIS  ND1       122.70   116.33     6.37  1.50e+00  1.80e+01   4.2*sigma
   A  43  HIS  ND1
   A  43  HIS  CG
   A  43  HIS  CD2       106.10   110.33    -4.23  1.00e+00  1.79e+01   4.2*sigma
   A  21  ARG  CA
   A  21  ARG  C
   A  22  PRO  N         116.90   123.17    -6.27  1.50e+00  1.75e+01   4.2*sigma
   A  99  LEU  C
   A  99  LEU  CA
   A  99  LEU  CB        110.10   117.99    -7.89  1.90e+00  1.72e+01   4.2*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.25    -4.15  1.00e+00  1.72e+01   4.1*sigma
   A  74  ASP  CA
   A  74  ASP  CB
   A  74  ASP  CG        112.60   108.49     4.11  1.00e+00  1.69e+01   4.1*sigma
   A 101  LYS  O
   A 101  LYS  C
   A 102  PRO  N         123.00   116.58     6.42  1.60e+00  1.61e+01   4.0*sigma

  Min. delta:    0.000 (Z=  0.000)
  Max. delta:   11.338 (Z=  7.214)
  Mean delta:    2.405 (Z=  1.331)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 133  GLU  CA
   A 133  GLU  C
   A 134  HIS  N
   A 134  HIS  CA        180.00   153.85    26.15  5.00e+00  2.74e+01   5.2*sigma
   A  78  ILE  CA
   A  78  ILE  C
   A  79  LYS  N
   A  79  LYS  CA        180.00   154.20    25.80  5.00e+00  2.66e+01   5.2*sigma
   A  87  GLY  CA
   A  87  GLY  C
   A  88  ASP  N
   A  88  ASP  CA        180.00   155.02    24.98  5.00e+00  2.50e+01   5.0*sigma
   A  51  ILE  CA
   A  51  ILE  C
   A  52  PRO  N
   A  52  PRO  CA        180.00   155.40    24.60  5.00e+00  2.42e+01   4.9*sigma
   A 135  HIS  CA
   A 135  HIS  C
   A 136  HIS  N
   A 136  HIS  CA        180.00   159.12    20.88  5.00e+00  1.74e+01   4.2*sigma

  Min. delta:    0.001
  Max. delta:   76.302
  Mean delta:   11.195

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.628
  Mean delta:    0.120

                       ----------Planar groups----------                       

  atoms                 rms_deltas   delta_max    residual   deviation
   A  68  TYR  CB
   A  68  TYR  CG
   A  68  TYR  CD1
   A  68  TYR  CD2
   A  68  TYR  CE1
   A  68  TYR  CE2
   A  68  TYR  CZ
   A  68  TYR  OH            0.052       0.095       54.96   4.8*sigma

  Min. delta:    0.000
  Max. delta:    0.088
  Mean delta:    0.015

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

                       ----------Angle outliers----------                      

   A 135  HIS  HA , Angle N-CA-HA, observed: 97.663, delta from target: 12.337
   A 123  GLU  HA , Angle C-CA-HA, observed: 93.687, delta from target: 15.313

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.012   0.065   2241  Z= 0.617
    Angle     :  2.131  15.313   4077  Z= 0.964
    Chirality :  0.120   0.628    176
    Planarity :  0.011   0.070    326
    Dihedral  : 10.029  76.302    768
    Min Nonbonded Distance : 1.722
  
  Molprobity Statistics.
    All-atom Clashscore : 4.51
    Ramachandran Plot:
      Outliers :  5.84 %
      Allowed  :  8.76 %
      Favored  : 85.40 %
    Rotamer:
      Outliers :  0.81 %
      Allowed  :  0.81 %
      Favored  : 98.39 %
    Cbeta Deviations :  2.27 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.00 %
      Twisted Proline : 0.00 %
      Twisted General : 0.00 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -1.47 (0.68), residues: 137
    helix:  1.24 (0.62), residues: 57
    sheet:  None (None), residues: 0
    loop : -2.87 (0.64), residues: 80
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.005   0.002   HIS A 138 
   PHE   0.056   0.014   PHE A  15 
   TYR   0.117   0.016   TYR A  12 
   ARG   0.069   0.016   ARG A  58 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.005   0.002   HIS A 138 
   PHE   0.052   0.012   PHE A  15 
   TYR   0.095   0.014   TYR A  68 
   ARG   0.018   0.004   ARG A 127 

                     ----------Asn/Gln/His flips----------                     

  No backwards Asn/Gln/His sidechains found.

=================================== Summary ===================================

  Ramachandran outliers =   6.57 %
                favored =  83.94 %
  Rotamer outliers      =   0.81 %
  C-beta deviations     =     7
  Clashscore            =   7.22
  RMS(bonds)            =   0.0114
  RMS(angles)           =   2.18
  MolProbity score      =   2.08

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py
  Ramachandran outliers =   5.84 %
                favored =  82.48 %
  Rotamer outliers      =   0.81 %
  C-beta deviations     =     2
  Clashscore            =   2.71
  RMS(bonds)            =   0.0116
  RMS(angles)           =   2.07
  MolProbity score      =   1.76

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py
  Ramachandran outliers =   5.84 %
                favored =  85.40 %
  Rotamer outliers      =   0.81 %
  C-beta deviations     =     3
  Clashscore            =   4.51
  RMS(bonds)            =   0.0117
  RMS(angles)           =   2.13
  MolProbity score      =   1.88

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py
  Ramachandran outliers =   7.30 %
                favored =  78.10 %
  Rotamer outliers      =   2.42 %
  C-beta deviations     =     3
  Clashscore            =  13.98
  RMS(bonds)            =   0.0122
  RMS(angles)           =   2.15
  MolProbity score      =   2.70

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py

End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000 (Z=  0.000)
  Max. delta:    0.065 (Z=  3.528)
  Mean delta:    0.016 (Z=  0.866)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 101  LYS  CA
   A 101  LYS  C
   A 102  PRO  N         116.90   127.72   -10.82  1.50e+00  5.20e+01   7.2*sigma
   A 123  GLU  CB
   A 123  GLU  CG
   A 123  GLU  CD        112.60   122.99   -10.39  1.70e+00  3.74e+01   6.1*sigma
   A 123  GLU  C
   A 123  GLU  CA
   A 123  GLU  CB        110.10   121.44   -11.34  1.90e+00  3.56e+01   6.0*sigma
   A  51  ILE  CA
   A  51  ILE  C
   A  52  PRO  N         116.90   124.81    -7.91  1.50e+00  2.78e+01   5.3*sigma
   A 122  ILE  C
   A 122  ILE  CA
   A 122  ILE  CB        111.60   101.98     9.62  2.00e+00  2.31e+01   4.8*sigma
   A  98  SER  N
   A  98  SER  CA
   A  98  SER  CB        110.50   118.50    -8.00  1.70e+00  2.22e+01   4.7*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   110.76    -4.66  1.00e+00  2.17e+01   4.7*sigma
   A   8  GLU  CB
   A   8  GLU  CG
   A   8  GLU  CD        112.60   104.90     7.70  1.70e+00  2.05e+01   4.5*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.60    -4.50  1.00e+00  2.02e+01   4.5*sigma
   A 134  HIS  ND1
   A 134  HIS  CG
   A 134  HIS  CD2       106.10   110.59    -4.49  1.00e+00  2.02e+01   4.5*sigma
   A 138  HIS  ND1
   A 138  HIS  CG
   A 138  HIS  CD2       106.10   110.54    -4.44  1.00e+00  1.97e+01   4.4*sigma
   A 136  HIS  ND1
   A 136  HIS  CG
   A 136  HIS  CD2       106.10   110.52    -4.42  1.00e+00  1.95e+01   4.4*sigma
   A  20  THR  CA
   A  20  THR  CB
   A  20  THR  CG2       110.50   117.72    -7.22  1.70e+00  1.80e+01   4.2*sigma
   A 135  HIS  CB
   A 135  HIS  CG
   A 135  HIS  ND1       122.70   116.33     6.37  1.50e+00  1.80e+01   4.2*sigma
   A  43  HIS  ND1
   A  43  HIS  CG
   A  43  HIS  CD2       106.10   110.33    -4.23  1.00e+00  1.79e+01   4.2*sigma
   A  21  ARG  CA
   A  21  ARG  C
   A  22  PRO  N         116.90   123.17    -6.27  1.50e+00  1.75e+01   4.2*sigma
   A  99  LEU  C
   A  99  LEU  CA
   A  99  LEU  CB        110.10   117.99    -7.89  1.90e+00  1.72e+01   4.2*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.25    -4.15  1.00e+00  1.72e+01   4.1*sigma
   A  74  ASP  CA
   A  74  ASP  CB
   A  74  ASP  CG        112.60   108.49     4.11  1.00e+00  1.69e+01   4.1*sigma
   A 101  LYS  O
   A 101  LYS  C
   A 102  PRO  N         123.00   116.58     6.42  1.60e+00  1.61e+01   4.0*sigma

  Min. delta:    0.000 (Z=  0.000)
  Max. delta:   11.338 (Z=  7.214)
  Mean delta:    2.405 (Z=  1.331)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 133  GLU  CA
   A 133  GLU  C
   A 134  HIS  N
   A 134  HIS  CA        180.00   153.85    26.15  5.00e+00  2.74e+01   5.2*sigma
   A  78  ILE  CA
   A  78  ILE  C
   A  79  LYS  N
   A  79  LYS  CA        180.00   154.20    25.80  5.00e+00  2.66e+01   5.2*sigma
   A  87  GLY  CA
   A  87  GLY  C
   A  88  ASP  N
   A  88  ASP  CA        180.00   155.02    24.98  5.00e+00  2.50e+01   5.0*sigma
   A  51  ILE  CA
   A  51  ILE  C
   A  52  PRO  N
   A  52  PRO  CA        180.00   155.40    24.60  5.00e+00  2.42e+01   4.9*sigma
   A 135  HIS  CA
   A 135  HIS  C
   A 136  HIS  N
   A 136  HIS  CA        180.00   159.12    20.88  5.00e+00  1.74e+01   4.2*sigma

  Min. delta:    0.001
  Max. delta:   76.302
  Mean delta:   11.195

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.628
  Mean delta:    0.120

                       ----------Planar groups----------                       

  atoms                 rms_deltas   delta_max    residual   deviation
   A  68  TYR  CB
   A  68  TYR  CG
   A  68  TYR  CD1
   A  68  TYR  CD2
   A  68  TYR  CE1
   A  68  TYR  CE2
   A  68  TYR  CZ
   A  68  TYR  OH            0.052       0.095       54.96   4.8*sigma

  Min. delta:    0.000
  Max. delta:    0.088
  Mean delta:    0.015

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

                       ----------Angle outliers----------                      

   A 135  HIS  HA , Angle N-CA-HA, observed: 97.663, delta from target: 12.337
   A 123  GLU  HA , Angle C-CA-HA, observed: 93.687, delta from target: 15.313

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.012   0.065   2241  Z= 0.617
    Angle     :  2.131  15.313   4077  Z= 0.964
    Chirality :  0.120   0.628    176
    Planarity :  0.011   0.070    326
    Dihedral  : 10.029  76.302    768
    Min Nonbonded Distance : 1.722
  
  Molprobity Statistics.
    All-atom Clashscore : 4.51
    Ramachandran Plot:
      Outliers :  5.84 %
      Allowed  :  8.76 %
      Favored  : 85.40 %
    Rotamer:
      Outliers :  0.81 %
      Allowed  :  0.81 %
      Favored  : 98.39 %
    Cbeta Deviations :  2.27 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.00 %
      Twisted Proline : 0.00 %
      Twisted General : 0.00 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -1.47 (0.68), residues: 137
    helix:  1.24 (0.62), residues: 57
    sheet:  None (None), residues: 0
    loop : -2.87 (0.64), residues: 80
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.005   0.002   HIS A 138 
   PHE   0.056   0.014   PHE A  15 
   TYR   0.117   0.016   TYR A  12 
   ARG   0.069   0.016   ARG A  58 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.005   0.002   HIS A 138 
   PHE   0.052   0.012   PHE A  15 
   TYR   0.095   0.014   TYR A  68 
   ARG   0.018   0.004   ARG A 127 

                     ----------Asn/Gln/His flips----------                     

  No backwards Asn/Gln/His sidechains found.

=================================== Summary ===================================


End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000 (Z=  0.000)
  Max. delta:    0.050 (Z=  3.467)
  Mean delta:    0.016 (Z=  0.850)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 114  PRO  N
   A 114  PRO  CA
   A 114  PRO  C         112.10   131.44   -19.34  2.50e+00  5.98e+01   7.7*sigma
   A  29  ASP  CA
   A  29  ASP  CB
   A  29  ASP  CG        112.60   119.87    -7.27  1.00e+00  5.29e+01   7.3*sigma
   A  36  ASP  CA
   A  36  ASP  CB
   A  36  ASP  CG        112.60   105.79     6.81  1.00e+00  4.63e+01   6.8*sigma
   A 116  ASP  CA
   A 116  ASP  C
   A 117  PRO  N         116.90   124.84    -7.94  1.50e+00  2.80e+01   5.3*sigma
   A  21  ARG  CA
   A  21  ARG  C
   A  22  PRO  N         116.90   124.47    -7.57  1.50e+00  2.55e+01   5.0*sigma
   A  47  ASP  CA
   A  47  ASP  CB
   A  47  ASP  CG        112.60   107.73     4.87  1.00e+00  2.37e+01   4.9*sigma
   A 126  VAL  CA
   A 126  VAL  CB
   A 126  VAL  CG1       110.40   118.47    -8.07  1.70e+00  2.25e+01   4.7*sigma
   A  72  ASN  N
   A  72  ASN  CA
   A  72  ASN  CB        110.50   118.27    -7.77  1.70e+00  2.09e+01   4.6*sigma
   A  53  LEU  CA
   A  53  LEU  C
   A  54  PRO  N         116.90   123.72    -6.82  1.50e+00  2.07e+01   4.5*sigma
   A 134  HIS  ND1
   A 134  HIS  CG
   A 134  HIS  CD2       106.10   110.59    -4.49  1.00e+00  2.02e+01   4.5*sigma
   A  43  HIS  CA
   A  43  HIS  CB
   A  43  HIS  CG        113.80   118.20    -4.40  1.00e+00  1.93e+01   4.4*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.45    -4.35  1.00e+00  1.90e+01   4.4*sigma
   A 126  VAL  N
   A 126  VAL  CA
   A 126  VAL  CB        111.50   118.67    -7.17  1.70e+00  1.78e+01   4.2*sigma
   A 138  HIS  ND1
   A 138  HIS  CG
   A 138  HIS  CD2       106.10   110.30    -4.20  1.00e+00  1.76e+01   4.2*sigma
   A  50  TYR  N
   A  50  TYR  CA
   A  50  TYR  CB        110.50   117.60    -7.10  1.70e+00  1.75e+01   4.2*sigma
   A 136  HIS  ND1
   A 136  HIS  CG
   A 136  HIS  CD2       106.10   110.27    -4.17  1.00e+00  1.74e+01   4.2*sigma
   A 113  LYS  O
   A 113  LYS  C
   A 114  PRO  N         123.00   116.53     6.47  1.60e+00  1.64e+01   4.0*sigma
   A  97  SER  C
   A  98  SER  N
   A  98  SER  CA        121.70   128.97    -7.27  1.80e+00  1.63e+01   4.0*sigma

  Min. delta:    0.007 (Z=  0.004)
  Max. delta:   19.336 (Z=  7.734)
  Mean delta:    2.345 (Z=  1.303)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 126  VAL  CA
   A 126  VAL  C
   A 127  ARG  N
   A 127  ARG  CA        180.00   132.66    47.34  5.00e+00  8.97e+01   9.5*sigma
   A 115  ALA  CA
   A 115  ALA  C
   A 116  ASP  N
   A 116  ASP  CA        180.00   149.12    30.88  5.00e+00  3.82e+01   6.2*sigma
   A 127  ARG  CA
   A 127  ARG  C
   A 128  MET  N
   A 128  MET  CA        180.00   150.67    29.33  5.00e+00  3.44e+01   5.9*sigma
   A 133  GLU  CA
   A 133  GLU  C
   A 134  HIS  N
   A 134  HIS  CA        180.00   153.72    26.28  5.00e+00  2.76e+01   5.3*sigma
   A 134  HIS  CA
   A 134  HIS  C
   A 135  HIS  N
   A 135  HIS  CA        180.00   154.19    25.81  5.00e+00  2.67e+01   5.2*sigma
   A 113  LYS  CA
   A 113  LYS  C
   A 114  PRO  N
   A 114  PRO  CA        180.00  -155.96   -24.04  5.00e+00  2.31e+01   4.8*sigma
   A  92  THR  CA
   A  92  THR  C
   A  93  LEU  N
   A  93  LEU  CA        180.00   157.50    22.50  5.00e+00  2.03e+01   4.5*sigma
   A 125  LYS  CA
   A 125  LYS  C
   A 126  VAL  N
   A 126  VAL  CA        180.00   157.50    22.50  5.00e+00  2.02e+01   4.5*sigma
   A 128  MET  CA
   A 128  MET  C
   A 129  ARG  N
   A 129  ARG  CA        180.00   157.78    22.22  5.00e+00  1.97e+01   4.4*sigma
   A 123  GLU  CA
   A 123  GLU  C
   A 124  ALA  N
   A 124  ALA  CA        180.00   158.62    21.38  5.00e+00  1.83e+01   4.3*sigma
   A   2  LEU  CA
   A   2  LEU  C
   A   3  LEU  N
   A   3  LEU  CA        180.00   159.86    20.14  5.00e+00  1.62e+01   4.0*sigma

  Min. delta:    0.005
  Max. delta:   71.389
  Mean delta:   11.746

                       ----------Chiral volumes----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 114  PRO  CA
   A 114  PRO  N
   A 114  PRO  C
   A 114  PRO  CB          2.72     1.85     0.86  2.00e-01  1.87e+01   4.3*sigma

  Min. delta:    0.000
  Max. delta:    0.865
  Mean delta:    0.141

                       ----------Planar groups----------                       

  atoms                 rms_deltas   delta_max    residual   deviation
   A 111  TYR  CB
   A 111  TYR  CG
   A 111  TYR  CD1
   A 111  TYR  CD2
   A 111  TYR  CE1
   A 111  TYR  CE2
   A 111  TYR  CZ
   A 111  TYR  OH            0.083       0.084      136.88   4.2*sigma

  Min. delta:    0.000
  Max. delta:    0.111
  Mean delta:    0.017

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

                       ----------Angle outliers----------                      

   A 114  PRO  HA , Angle N-CA-HA, observed: 97.078, delta from target: 12.922
   A 114  PRO  HA , Angle CB-CA-HA, observed: 125.739, delta from target: -16.739
   A 114  PRO  HA , Angle C-CA-HA, observed: 90.684, delta from target: 18.316

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.011   0.050   2241  Z= 0.605
    Angle     :  2.120  19.336   4077  Z= 0.954
    Chirality :  0.141   0.865    176
    Planarity :  0.013   0.111    326
    Dihedral  :  9.834  71.389    768
    Min Nonbonded Distance : 1.817
  
  Molprobity Statistics.
    All-atom Clashscore : 4.06
    Ramachandran Plot:
      Outliers :  8.76 %
      Allowed  :  8.76 %
      Favored  : 82.48 %
    Rotamer:
      Outliers :  0.81 %
      Allowed  :  0.81 %
      Favored  : 98.39 %
    Cbeta Deviations :  4.55 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.00 %
      Twisted Proline : 0.00 %
      Twisted General : 1.53 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -1.73 (0.72), residues: 137
    helix:  1.21 (0.64), residues: 57
    sheet:  None (None), residues: 0
    loop : -3.19 (0.68), residues: 80
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.007   0.002   HIS A  43 
   PHE   0.115   0.022   PHE A  15 
   TYR   0.177   0.027   TYR A 111 
   ARG   0.056   0.011   ARG A  58 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.007   0.002   HIS A  43 
   PHE   0.066   0.018   PHE A  15 
   TYR   0.138   0.027   TYR A 111 
   ARG   0.008   0.002   ARG A  21 

                     ----------Asn/Gln/His flips----------                     

  No backwards Asn/Gln/His sidechains found.

=================================== Summary ===================================

        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'CIS': 4, 'PCIS': 1, 'PTRANS': 6, 'TRANS': 127}

End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  atoms                 ideal   model   delta   sigma   slack  residual   deviation
   A 134  HIS  CE1
   A 134  HIS  NE2         1.32     1.36    -0.04  1.00e-02  1.63e+01   4.0*sigma

  Min. delta:    0.000 (Z=  0.000)
  Max. delta:    0.048 (Z=  4.032)
  Mean delta:    0.017 (Z=  0.916)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 137  HIS  C
   A 138  HIS  N
   A 138  HIS  CA        121.70   136.30   -14.60  1.80e+00  6.58e+01   8.1*sigma
   A 135  HIS  C
   A 136  HIS  N
   A 136  HIS  CA        121.70   135.27   -13.57  1.80e+00  5.68e+01   7.5*sigma
   A 135  HIS  O
   A 135  HIS  C
   A 136  HIS  N         123.00   112.71    10.29  1.60e+00  4.14e+01   6.4*sigma
   A 137  HIS  N
   A 137  HIS  CA
   A 137  HIS  CB        110.50   120.32    -9.82  1.70e+00  3.34e+01   5.8*sigma
   A 135  HIS  CA
   A 135  HIS  C
   A 136  HIS  N         116.20   127.16   -10.96  2.00e+00  3.00e+01   5.5*sigma
   A 138  HIS  CA
   A 138  HIS  CB
   A 138  HIS  CG        113.80   118.89    -5.09  1.00e+00  2.59e+01   5.1*sigma
   A 136  HIS  CA
   A 136  HIS  CB
   A 136  HIS  CG        113.80   118.66    -4.86  1.00e+00  2.36e+01   4.9*sigma
   A  20  THR  CA
   A  20  THR  CB
   A  20  THR  CG2       110.50   118.75    -8.25  1.70e+00  2.36e+01   4.9*sigma
   A 113  LYS  CA
   A 113  LYS  C
   A 114  PRO  N         116.90   124.06    -7.16  1.50e+00  2.28e+01   4.8*sigma
   A 138  HIS  N
   A 138  HIS  CA
   A 138  HIS  CB        110.50   118.60    -8.10  1.70e+00  2.27e+01   4.8*sigma
   A  42  GLY  C
   A  43  HIS  N
   A  43  HIS  CA        121.70   130.26    -8.56  1.80e+00  2.26e+01   4.8*sigma
   A  51  ILE  CA
   A  51  ILE  C
   A  52  PRO  N         116.90   124.02    -7.12  1.50e+00  2.26e+01   4.7*sigma
   A 137  HIS  O
   A 137  HIS  C
   A 138  HIS  N         123.00   115.44     7.56  1.60e+00  2.23e+01   4.7*sigma
   A 135  HIS  N
   A 135  HIS  CA
   A 135  HIS  CB        110.50   118.44    -7.94  1.70e+00  2.18e+01   4.7*sigma
   A 136  HIS  N
   A 136  HIS  CA
   A 136  HIS  CB        110.50   118.32    -7.82  1.70e+00  2.11e+01   4.6*sigma
   A 138  HIS  ND1
   A 138  HIS  CG
   A 138  HIS  CD2       106.10   110.66    -4.56  1.00e+00  2.08e+01   4.6*sigma
   A 116  ASP  CA
   A 116  ASP  C
   A 117  PRO  N         116.90   123.65    -6.75  1.50e+00  2.02e+01   4.5*sigma
   A 139  HIS  N
   A 139  HIS  CA
   A 139  HIS  CB        110.50   118.01    -7.51  1.70e+00  1.95e+01   4.4*sigma
   A 136  HIS  CB
   A 136  HIS  CG
   A 136  HIS  CD2       131.20   125.49     5.71  1.30e+00  1.93e+01   4.4*sigma
   A  21  ARG  CA
   A  21  ARG  C
   A  22  PRO  N         116.90   123.36    -6.46  1.50e+00  1.85e+01   4.3*sigma
   A  43  HIS  ND1
   A  43  HIS  CG
   A  43  HIS  CD2       106.10   110.41    -4.31  1.00e+00  1.85e+01   4.3*sigma
   A  49  GLU  CA
   A  49  GLU  CB
   A  49  GLU  CG        114.10   122.66    -8.56  2.00e+00  1.83e+01   4.3*sigma
   A 116  ASP  O
   A 116  ASP  C
   A 117  PRO  N         123.00   116.23     6.77  1.60e+00  1.79e+01   4.2*sigma
   A 137  HIS  CA
   A 137  HIS  C
   A 138  HIS  N         116.20   124.61    -8.41  2.00e+00  1.77e+01   4.2*sigma
   A  53  LEU  CA
   A  53  LEU  C
   A  54  PRO  N         116.90   123.06    -6.16  1.50e+00  1.69e+01   4.1*sigma
   A 139  HIS  ND1
   A 139  HIS  CE1
   A 139  HIS  NE2       108.40   112.45    -4.05  1.00e+00  1.64e+01   4.0*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   110.14    -4.04  1.00e+00  1.63e+01   4.0*sigma

  Min. delta:    0.001 (Z=  0.001)
  Max. delta:   14.601 (Z=  8.112)
  Mean delta:    2.277 (Z=  1.303)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 138  HIS  CA
   A 138  HIS  C
   A 139  HIS  N
   A 139  HIS  CA        180.00   144.07    35.93  5.00e+00  5.16e+01   7.2*sigma
   A 119  LEU  CA
   A 119  LEU  C
   A 120  GLU  N
   A 120  GLU  CA        180.00   156.99    23.01  5.00e+00  2.12e+01   4.6*sigma
   A 135  HIS  CA
   A 135  HIS  C
   A 136  HIS  N
   A 136  HIS  CA          0.00    20.08   -20.08  5.00e+00  1.61e+01   4.0*sigma

  Min. delta:    0.012
  Max. delta:   74.085
  Mean delta:    9.665

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.001
  Max. delta:    0.707
  Mean delta:    0.106

                       ----------Planar groups----------                       

  atoms                 rms_deltas   delta_max    residual   deviation
   A 136  HIS  CB
   A 136  HIS  CG
   A 136  HIS  ND1
   A 136  HIS  CD2
   A 136  HIS  CE1
   A 136  HIS  NE2           0.094       0.126      131.29   6.3*sigma
   A 138  HIS  CB
   A 138  HIS  CG
   A 138  HIS  ND1
   A 138  HIS  CD2
   A 138  HIS  CE1
   A 138  HIS  NE2           0.067       0.101       67.68   5.1*sigma

  Min. delta:    0.000
  Max. delta:    0.109
  Mean delta:    0.016

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.012   0.048   2241  Z= 0.652
    Angle     :  2.010  14.601   4077  Z= 0.934
    Chirality :  0.106   0.707    176
    Planarity :  0.012   0.089    326
    Dihedral  :  9.347  74.085    768
    Min Nonbonded Distance : 1.709
  
  Molprobity Statistics.
    All-atom Clashscore : 3.16
    Ramachandran Plot:
      Outliers :  8.03 %
      Allowed  : 16.06 %
      Favored  : 75.91 %
    Rotamer:
      Outliers :  0.00 %
      Allowed  :  0.00 %
      Favored  : 100.00 %
    Cbeta Deviations :  3.03 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 1.53 %
      Twisted Proline : 0.00 %
      Twisted General : 0.76 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -1.59 (0.73), residues: 137
    helix:  1.34 (0.61), residues: 66
    sheet:  None (None), residues: 0
    loop : -3.71 (0.70), residues: 71
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.004   0.001   HIS A  43 
   PHE   0.045   0.010   PHE A  67 
   TYR   0.111   0.016   TYR A  89 
   ARG   0.076   0.014   ARG A  21 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.004   0.001   HIS A  43 
   PHE   0.018   0.006   PHE A  67 
   TYR   0.079   0.015   TYR A  89 
   ARG   0.032   0.005   ARG A  21 

                     ----------Asn/Gln/His flips----------                     

   A 137  HIS
   A  66  GLN

=================================== Summary ===================================

  Ramachandran outliers =   5.84 %
                favored =  85.40 %
  Rotamer outliers      =   0.81 %
  C-beta deviations     =     3
  Clashscore            =   4.51
  RMS(bonds)            =   0.0117
  RMS(angles)           =   2.13
  MolProbity score      =   1.88

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py

End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000 (Z=  0.001)
  Max. delta:    0.062 (Z=  3.570)
  Mean delta:    0.015 (Z=  0.811)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  51  ILE  CA
   A  51  ILE  C
   A  52  PRO  N         116.90   126.79    -9.89  1.50e+00  4.35e+01   6.6*sigma
   A  51  ILE  O
   A  51  ILE  C
   A  52  PRO  N         123.00   114.10     8.90  1.60e+00  3.10e+01   5.6*sigma
   A 118  ASP  CA
   A 118  ASP  CB
   A 118  ASP  CG        112.60   117.37    -4.77  1.00e+00  2.28e+01   4.8*sigma
   A  52  PRO  N
   A  52  PRO  CD
   A  52  PRO  CG        103.20   110.18    -6.98  1.50e+00  2.17e+01   4.7*sigma
   A 134  HIS  ND1
   A 134  HIS  CG
   A 134  HIS  CD2       106.10   110.68    -4.58  1.00e+00  2.09e+01   4.6*sigma
   A  43  HIS  ND1
   A  43  HIS  CG
   A  43  HIS  CD2       106.10   110.65    -4.55  1.00e+00  2.07e+01   4.6*sigma
   A  61  LEU  CD1
   A  61  LEU  CG
   A  61  LEU  CD2       110.80   100.94     9.86  2.20e+00  2.01e+01   4.5*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.44    -4.34  1.00e+00  1.89e+01   4.3*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.44    -4.34  1.00e+00  1.88e+01   4.3*sigma
   A 136  HIS  ND1
   A 136  HIS  CG
   A 136  HIS  CD2       106.10   110.41    -4.31  1.00e+00  1.86e+01   4.3*sigma
   A  74  ASP  C
   A  75  GLU  N
   A  75  GLU  CA        121.70   129.37    -7.67  1.80e+00  1.82e+01   4.3*sigma
   A 116  ASP  CA
   A 116  ASP  CB
   A 116  ASP  CG        112.60   116.85    -4.25  1.00e+00  1.80e+01   4.2*sigma
   A 138  HIS  ND1
   A 138  HIS  CG
   A 138  HIS  CD2       106.10   110.25    -4.15  1.00e+00  1.72e+01   4.2*sigma
   A 115  ALA  C
   A 116  ASP  N
   A 116  ASP  CA        121.70   128.92    -7.22  1.80e+00  1.61e+01   4.0*sigma

  Min. delta:    0.001 (Z=  0.001)
  Max. delta:    9.891 (Z=  6.594)
  Mean delta:    2.166 (Z=  1.221)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 118  ASP  CA
   A 118  ASP  C
   A 119  LEU  N
   A 119  LEU  CA        180.00   138.32    41.68  5.00e+00  6.95e+01   8.3*sigma
   A 116  ASP  CA
   A 116  ASP  C
   A 117  PRO  N
   A 117  PRO  CA        180.00   144.99    35.01  5.00e+00  4.90e+01   7.0*sigma
   A 138  HIS  CA
   A 138  HIS  C
   A 139  HIS  N
   A 139  HIS  CA        180.00   157.34    22.66  5.00e+00  2.05e+01   4.5*sigma
   A  12  TYR  CA
   A  12  TYR  C
   A  13  SER  N
   A  13  SER  CA        180.00  -159.46   -20.54  5.00e+00  1.69e+01   4.1*sigma
   A 120  GLU  CA
   A 120  GLU  C
   A 121  GLY  N
   A 121  GLY  CA        180.00   159.86    20.14  5.00e+00  1.62e+01   4.0*sigma

  Min. delta:    0.005
  Max. delta:   71.595
  Mean delta:   10.098

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.597
  Mean delta:    0.123

                       ----------Planar groups----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.064
  Mean delta:    0.011

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

                       ----------Angle outliers----------                      

   A 139  HIS  HA , Angle C-CA-HA, observed: 95.366, delta from target: 13.634

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.011   0.062   2241  Z= 0.577
    Angle     :  1.980  13.634   4077  Z= 0.895
    Chirality :  0.123   0.597    176
    Planarity :  0.009   0.064    326
    Dihedral  :  8.982  71.595    768
    Min Nonbonded Distance : 1.619
  
  Molprobity Statistics.
    All-atom Clashscore : 4.51
    Ramachandran Plot:
      Outliers :  4.38 %
      Allowed  : 11.68 %
      Favored  : 83.94 %
    Rotamer:
      Outliers :  0.00 %
      Allowed  :  0.81 %
      Favored  : 99.19 %
    Cbeta Deviations :  3.79 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.76 %
      Twisted Proline : 14.29 %
      Twisted General : 0.76 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -1.62 (0.66), residues: 137
    helix:  1.12 (0.59), residues: 64
    sheet:  None (None), residues: 0
    loop : -3.37 (0.59), residues: 73
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.005   0.001   HIS A 139 
   PHE   0.044   0.011   PHE A  15 
   TYR   0.071   0.012   TYR A  12 
   ARG   0.012   0.003   ARG A 127 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.005   0.001   HIS A 139 
   PHE   0.041   0.012   PHE A  15 
   TYR   0.042   0.010   TYR A  89 
   ARG   0.008   0.002   ARG A 127 

                     ----------Asn/Gln/His flips----------                     

  No backwards Asn/Gln/His sidechains found.

=================================== Summary ===================================


End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000 (Z=  0.001)
  Max. delta:    0.056 (Z=  3.689)
  Mean delta:    0.016 (Z=  0.835)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 116  ASP  CA
   A 116  ASP  CB
   A 116  ASP  CG        112.60   120.96    -8.36  1.00e+00  6.98e+01   8.4*sigma
   A 114  PRO  N
   A 114  PRO  CA
   A 114  PRO  C         112.10   127.78   -15.68  2.50e+00  3.93e+01   6.3*sigma
   A  87  GLY  C
   A  88  ASP  N
   A  88  ASP  CA        121.70   132.12   -10.42  1.80e+00  3.35e+01   5.8*sigma
   A 116  ASP  CA
   A 116  ASP  C
   A 117  PRO  N         116.90   124.57    -7.67  1.50e+00  2.61e+01   5.1*sigma
   A 136  HIS  ND1
   A 136  HIS  CG
   A 136  HIS  CD2       106.10   110.92    -4.82  1.00e+00  2.33e+01   4.8*sigma
   A 115  ALA  O
   A 115  ALA  C
   A 116  ASP  N         123.00   115.72     7.28  1.60e+00  2.07e+01   4.6*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   110.58    -4.48  1.00e+00  2.01e+01   4.5*sigma
   A  36  ASP  CA
   A  36  ASP  CB
   A  36  ASP  CG        112.60   117.06    -4.46  1.00e+00  1.99e+01   4.5*sigma
   A 134  HIS  ND1
   A 134  HIS  CG
   A 134  HIS  CD2       106.10   110.44    -4.34  1.00e+00  1.88e+01   4.3*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.43    -4.33  1.00e+00  1.88e+01   4.3*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.37    -4.27  1.00e+00  1.82e+01   4.3*sigma
   A  43  HIS  ND1
   A  43  HIS  CG
   A  43  HIS  CD2       106.10   110.32    -4.22  1.00e+00  1.78e+01   4.2*sigma
   A  51  ILE  CA
   A  51  ILE  C
   A  52  PRO  N         116.90   123.17    -6.27  1.50e+00  1.75e+01   4.2*sigma
   A 138  HIS  ND1
   A 138  HIS  CG
   A 138  HIS  CD2       106.10   110.11    -4.01  1.00e+00  1.61e+01   4.0*sigma

  Min. delta:    0.004 (Z=  0.002)
  Max. delta:   15.679 (Z=  8.357)
  Mean delta:    2.221 (Z=  1.244)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 116  ASP  CA
   A 116  ASP  C
   A 117  PRO  N
   A 117  PRO  CA        180.00   149.38    30.62  5.00e+00  3.75e+01   6.1*sigma
   A 113  LYS  CA
   A 113  LYS  C
   A 114  PRO  N
   A 114  PRO  CA        180.00  -149.97   -30.03  5.00e+00  3.61e+01   6.0*sigma
   A 135  HIS  CA
   A 135  HIS  C
   A 136  HIS  N
   A 136  HIS  CA        180.00   153.63    26.37  5.00e+00  2.78e+01   5.3*sigma
   A 134  HIS  CA
   A 134  HIS  C
   A 135  HIS  N
   A 135  HIS  CA        180.00   159.18    20.82  5.00e+00  1.73e+01   4.2*sigma

  Min. delta:    0.004
  Max. delta:   72.018
  Mean delta:   10.457

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.435
  Mean delta:    0.111

                       ----------Planar groups----------                       

  atoms                 rms_deltas   delta_max    residual   deviation
   A  68  TYR  CB
   A  68  TYR  CG
   A  68  TYR  CD1
   A  68  TYR  CD2
   A  68  TYR  CE1
   A  68  TYR  CE2
   A  68  TYR  CZ
   A  68  TYR  OH            0.049       0.092       47.43   4.6*sigma

  Min. delta:    0.000
  Max. delta:    0.105
  Mean delta:    0.014

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

                       ----------Angle outliers----------                      

   A 128  MET  HA , Angle N-CA-HA, observed: 97.392, delta from target: 12.608
   A 114  PRO  HA , Angle C-CA-HA, observed: 95.477, delta from target: 13.523
   A 114  PRO  HA , Angle CB-CA-HA, observed: 125.934, delta from target: -16.934

============================ Molprobity validation ============================

  Ramachandran outliers =   8.76 %
                favored =  82.48 %
  Rotamer outliers      =   0.81 %
  C-beta deviations     =     6
  Clashscore            =   4.06
  RMS(bonds)            =   0.0115
  RMS(angles)           =   2.12
  MolProbity score      =   1.89

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py

  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.011   0.056   2241  Z= 0.594
    Angle     :  1.995  16.934   4077  Z= 0.905
    Chirality :  0.111   0.435    176
    Planarity :  0.011   0.077    326
    Dihedral  :  9.797  72.018    768
    Min Nonbonded Distance : 1.726
  
  Molprobity Statistics.
    All-atom Clashscore : 1.80
    Ramachandran Plot:
      Outliers :  3.65 %
      Allowed  :  9.49 %
      Favored  : 86.86 %
    Rotamer:
      Outliers :  0.81 %
      Allowed  :  0.00 %
      Favored  : 99.19 %
    Cbeta Deviations :  2.27 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.00 %
      Twisted Proline : 28.57 %
      Twisted General : 0.00 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -0.42 (0.69), residues: 137
    helix:  1.66 (0.60), residues: 61
    sheet:  0.15 (1.58), residues: 12
    loop : -2.46 (0.72), residues: 64
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.007   0.002   HIS A  43 
   PHE   0.058   0.017   PHE A  67 
   TYR   0.108   0.023   TYR A  68 
   ARG   0.076   0.013   ARG A  21 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.007   0.002   HIS A  43 
   PHE   0.026   0.010   PHE A  67 
   TYR   0.092   0.019   TYR A  68 
   ARG   0.017   0.005   ARG A 127 

                     ----------Asn/Gln/His flips----------                     

  No backwards Asn/Gln/His sidechains found.

=================================== Summary ===================================

  Ramachandran outliers =   8.03 %
                favored =  75.91 %
  Rotamer outliers      =   0.00 %
  C-beta deviations     =     4
  Clashscore            =   3.16
  RMS(bonds)            =   0.0122
  RMS(angles)           =   2.01
  MolProbity score      =   1.89

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'PCIS': 1, 'PTRANS': 6, 'TRANS': 131}
  Ramachandran outliers =   4.38 %
                favored =  83.94 %
  Rotamer outliers      =   0.00 %
  C-beta deviations     =     5
  Clashscore            =   4.51
  RMS(bonds)            =   0.0108
  RMS(angles)           =   1.98
  MolProbity score      =   1.91

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py
        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'PTRANS': 7, 'TRANS': 131}
  Ramachandran outliers =   3.65 %
                favored =  86.86 %
  Rotamer outliers      =   0.81 %
  C-beta deviations     =     3
  Clashscore            =   1.80
  RMS(bonds)            =   0.0112
  RMS(angles)           =   2.00
  MolProbity score      =   1.56

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py
  Time building chain proxies: 1.15, per 1000 atoms: 0.52
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (99.774, 53.739, 62.272, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.

  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 1.04
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 1.17 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

        Number of residues, atoms: 139, 2217
          Classifications: {'peptide': 139}
          Modifications used: {'NH3': 1}
          Link IDs: {'CIS': 1, 'PTRANS': 7, 'TRANS': 130}
  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 117
        1.23 -     1.43: 359
        1.43 -     1.63: 655
        1.63 -     1.83: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" CD  ARG A 127 "
       model="   1" pdb=" NE  ARG A 127 "
    ideal  model  delta    sigma   weight residual
    1.458  1.512 -0.054 1.40e-02 5.10e+03 1.50e+01
  bond model="   1" pdb=" CE1 HIS A 136 "
       model="   1" pdb=" NE2 HIS A 136 "
    ideal  model  delta    sigma   weight residual
    1.321  1.356 -0.035 1.00e-02 1.00e+04 1.23e+01
  bond model="   1" pdb=" CD  ARG A 129 "
       model="   1" pdb=" NE  ARG A 129 "
    ideal  model  delta    sigma   weight residual
    1.458  1.507 -0.049 1.40e-02 5.10e+03 1.22e+01
  bond model="   1" pdb=" CE1 HIS A 137 "
       model="   1" pdb=" NE2 HIS A 137 "
    ideal  model  delta    sigma   weight residual
    1.321  1.356 -0.035 1.00e-02 1.00e+04 1.20e+01
  bond model="   1" pdb=" CE1 HIS A 138 "
       model="   1" pdb=" NE2 HIS A 138 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.14e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       93.49 -   101.02: 13
      101.02 -   108.55: 767
      108.55 -   116.08: 2199
      116.08 -   123.61: 925
      123.61 -   131.14: 173
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" CA  LYS A 101 "
        model="   1" pdb=" C   LYS A 101 "
        model="   1" pdb=" N   PRO A 102 "
      ideal   model   delta    sigma   weight residual
     116.90  128.77  -11.87 1.50e+00 4.44e-01 6.26e+01
  angle model="   1" pdb=" CD1 LEU A   2 "
        model="   1" pdb=" CG  LEU A   2 "
        model="   1" pdb=" CD2 LEU A   2 "
      ideal   model   delta    sigma   weight residual
     110.80   97.40   13.40 2.20e+00 2.07e-01 3.71e+01
  angle model="   1" pdb=" CA  ASP A 116 "
        model="   1" pdb=" C   ASP A 116 "
        model="   1" pdb=" N   PRO A 117 "
      ideal   model   delta    sigma   weight residual
     116.90  125.95   -9.05 1.50e+00 4.44e-01 3.64e+01
  angle model="   1" pdb=" CA  ILE A  30 "
        model="   1" pdb=" CB  ILE A  30 "
        model="   1" pdb=" CG1 ILE A  30 "
      ideal   model   delta    sigma   weight residual
     110.40  120.02   -9.62 1.70e+00 3.46e-01 3.20e+01
  angle model="   1" pdb=" CB  LEU A   2 "
        model="   1" pdb=" CG  LEU A   2 "
        model="   1" pdb=" HG  LEU A   2 "
      ideal   model   delta    sigma   weight residual
     109.00   93.49   15.51 3.00e+00 1.11e-01 2.67e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    12.00: 922
       12.00 -    24.00: 82
       24.00 -    35.99: 19
       35.99 -    47.99: 5
       47.99 -    59.99: 4
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" CA  ILE A  51 "
           model="   1" pdb=" C   ILE A  51 "
           model="   1" pdb=" N   PRO A  52 "
           model="   1" pdb=" CA  PRO A  52 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  149.97   30.03     0      5.00e+00 4.00e-02 3.61e+01
  dihedral model="   1" pdb=" N   ASP A 116 "
           model="   1" pdb=" C   ASP A 116 "
           model="   1" pdb=" CA  ASP A 116 "
           model="   1" pdb=" CB  ASP A 116 "
      ideal   model   delta  harmonic     sigma   weight residual
     122.80  137.19  -14.39     0      2.50e+00 1.60e-01 3.31e+01
  dihedral model="   1" pdb=" C   ASP A 116 "
           model="   1" pdb=" N   ASP A 116 "
           model="   1" pdb=" CA  ASP A 116 "
           model="   1" pdb=" CB  ASP A 116 "
      ideal   model   delta  harmonic     sigma   weight residual
    -122.60 -136.97   14.37     0      2.50e+00 1.60e-01 3.31e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.000 -    0.117: 130
       0.117 -    0.234: 31
       0.234 -    0.351: 11
       0.351 -    0.467: 3
       0.467 -    0.584: 1
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  ASP A 116 "
            model="   1" pdb=" N   ASP A 116 "
            model="   1" pdb=" C   ASP A 116 "
            model="   1" pdb=" CB  ASP A 116 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    1.93    0.58 2.00e-01 2.50e+01 8.54e+00
  chirality model="   1" pdb=" CA  ARG A 127 "
            model="   1" pdb=" N   ARG A 127 "
            model="   1" pdb=" C   ARG A 127 "
            model="   1" pdb=" CB  ARG A 127 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.87   -0.36 2.00e-01 2.50e+01 3.22e+00
  chirality model="   1" pdb=" CB  ILE A  71 "
            model="   1" pdb=" CA  ILE A  71 "
            model="   1" pdb=" CG1 ILE A  71 "
            model="   1" pdb=" CG2 ILE A  71 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.64    2.29    0.36 2.00e-01 2.50e+01 3.17e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A 111 "   -0.015 2.00e-02 2.50e+03   8.93e-02 2.39e+02
        model="   1" pdb=" CG  TYR A 111 "    0.035 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A 111 "    0.050 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A 111 "   -0.017 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A 111 "   -0.074 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A 111 "   -0.008 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A 111 "   -0.009 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A 111 "    0.152 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A 111 "    0.142 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A 111 "   -0.057 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A 111 "   -0.198 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A 111 "   -0.001 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  PHE A  45 "    0.118 2.00e-02 2.50e+03   5.74e-02 9.90e+01
        model="   1" pdb=" CG  PHE A  45 "   -0.014 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 PHE A  45 "   -0.047 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 PHE A  45 "   -0.011 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 PHE A  45 "    0.014 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 PHE A  45 "   -0.022 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  PHE A  45 "    0.024 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 PHE A  45 "   -0.110 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 PHE A  45 "   -0.002 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 PHE A  45 "    0.048 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 PHE A  45 "   -0.060 2.00e-02 2.50e+03
        model="   1" pdb=" HZ  PHE A  45 "    0.062 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A 105 "   -0.026 2.00e-02 2.50e+03   5.67e-02 9.64e+01
        model="   1" pdb=" CG  TYR A 105 "    0.031 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A 105 "   -0.022 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A 105 "    0.038 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A 105 "    0.028 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A 105 "   -0.033 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A 105 "   -0.000 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A 105 "    0.004 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A 105 "   -0.090 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A 105 "    0.091 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A 105 "    0.080 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A 105 "   -0.102 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.61 -     2.20: 148
        2.20 -     2.80: 4445
        2.80 -     3.40: 5710
        3.40 -     4.00: 7150
        4.00 -     4.60: 10590
  Nonbonded interactions: 28043
  Sorted by model distance:
  nonbonded model="   1" pdb=" HB2 LYS A 109 "
            model="   1" pdb="HD13 LEU A 119 "
     model   vdw
     1.606 2.440
  nonbonded model="   1" pdb=" OE1 GLU A  55 "
            model="   1" pdb=" HE  ARG A  58 "
     model   vdw
     1.723 1.850
  nonbonded model="   1" pdb=" HZ2 LYS A 109 "
            model="   1" pdb=" OD1 ASP A 110 "
     model   vdw
     1.738 1.850
  nonbonded model="   1" pdb=" OE2 GLU A 120 "
            model="   1" pdb="HH21 ARG A 127 "
     model   vdw
     1.743 1.850
  nonbonded model="   1" pdb=" OE2 GLU A  55 "
            model="   1" pdb="HH21 ARG A  58 "
     model   vdw
     1.749 1.850
  ... (remaining 28038 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.
  Time building chain proxies: 1.20, per 1000 atoms: 0.54
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (79.106, 47.14, 55.041, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.
  Time building chain proxies: 1.10, per 1000 atoms: 0.50
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (56.328, 78.278, 59.127, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.
  Time building chain proxies: 1.20, per 1000 atoms: 0.54
  Number of scatterers: 2217
  At special positions: 0
  Unit cell: (112.333, 49.288, 56.585, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 5
    Type Number    sf(0)
     S       2     16.00
     O     216      8.00
     N     180      7.00
     C     713      6.00
     H    1106      1.00
    sf(0) = scattering factor at diffraction angle 0.

End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000 (Z=  0.001)
  Max. delta:    0.056 (Z=  3.689)
  Mean delta:    0.016 (Z=  0.835)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 116  ASP  CA
   A 116  ASP  CB
   A 116  ASP  CG        112.60   120.96    -8.36  1.00e+00  6.98e+01   8.4*sigma
   A 114  PRO  N
   A 114  PRO  CA
   A 114  PRO  C         112.10   127.78   -15.68  2.50e+00  3.93e+01   6.3*sigma
   A  87  GLY  C
   A  88  ASP  N
   A  88  ASP  CA        121.70   132.12   -10.42  1.80e+00  3.35e+01   5.8*sigma
   A 116  ASP  CA
   A 116  ASP  C
   A 117  PRO  N         116.90   124.57    -7.67  1.50e+00  2.61e+01   5.1*sigma
   A 136  HIS  ND1
   A 136  HIS  CG
   A 136  HIS  CD2       106.10   110.92    -4.82  1.00e+00  2.33e+01   4.8*sigma
   A 115  ALA  O
   A 115  ALA  C
   A 116  ASP  N         123.00   115.72     7.28  1.60e+00  2.07e+01   4.6*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   110.58    -4.48  1.00e+00  2.01e+01   4.5*sigma
   A  36  ASP  CA
   A  36  ASP  CB
   A  36  ASP  CG        112.60   117.06    -4.46  1.00e+00  1.99e+01   4.5*sigma
   A 134  HIS  ND1
   A 134  HIS  CG
   A 134  HIS  CD2       106.10   110.44    -4.34  1.00e+00  1.88e+01   4.3*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.43    -4.33  1.00e+00  1.88e+01   4.3*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.37    -4.27  1.00e+00  1.82e+01   4.3*sigma
   A  43  HIS  ND1
   A  43  HIS  CG
   A  43  HIS  CD2       106.10   110.32    -4.22  1.00e+00  1.78e+01   4.2*sigma
   A  51  ILE  CA
   A  51  ILE  C
   A  52  PRO  N         116.90   123.17    -6.27  1.50e+00  1.75e+01   4.2*sigma
   A 138  HIS  ND1
   A 138  HIS  CG
   A 138  HIS  CD2       106.10   110.11    -4.01  1.00e+00  1.61e+01   4.0*sigma

  Min. delta:    0.004 (Z=  0.002)
  Max. delta:   15.679 (Z=  8.357)
  Mean delta:    2.221 (Z=  1.244)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 116  ASP  CA
   A 116  ASP  C
   A 117  PRO  N
   A 117  PRO  CA        180.00   149.38    30.62  5.00e+00  3.75e+01   6.1*sigma
   A 113  LYS  CA
   A 113  LYS  C
   A 114  PRO  N
   A 114  PRO  CA        180.00  -149.97   -30.03  5.00e+00  3.61e+01   6.0*sigma
   A 135  HIS  CA
   A 135  HIS  C
   A 136  HIS  N
   A 136  HIS  CA        180.00   153.63    26.37  5.00e+00  2.78e+01   5.3*sigma
   A 134  HIS  CA
   A 134  HIS  C
   A 135  HIS  N
   A 135  HIS  CA        180.00   159.18    20.82  5.00e+00  1.73e+01   4.2*sigma

  Min. delta:    0.004
  Max. delta:   72.018
  Mean delta:   10.457

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.435
  Mean delta:    0.111

                       ----------Planar groups----------                       

  atoms                 rms_deltas   delta_max    residual   deviation
   A  68  TYR  CB
   A  68  TYR  CG
   A  68  TYR  CD1
   A  68  TYR  CD2
   A  68  TYR  CE1
   A  68  TYR  CE2
   A  68  TYR  CZ
   A  68  TYR  OH            0.049       0.092       47.43   4.6*sigma

  Min. delta:    0.000
  Max. delta:    0.105
  Mean delta:    0.014

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

                       ----------Angle outliers----------                      

   A 128  MET  HA , Angle N-CA-HA, observed: 97.392, delta from target: 12.608
   A 114  PRO  HA , Angle C-CA-HA, observed: 95.477, delta from target: 13.523
   A 114  PRO  HA , Angle CB-CA-HA, observed: 125.934, delta from target: -16.934

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.011   0.056   2241  Z= 0.594
    Angle     :  1.995  16.934   4077  Z= 0.905
    Chirality :  0.111   0.435    176
    Planarity :  0.011   0.077    326
    Dihedral  :  9.797  72.018    768
    Min Nonbonded Distance : 1.726
  
  Molprobity Statistics.
    All-atom Clashscore : 1.80
    Ramachandran Plot:
      Outliers :  3.65 %
      Allowed  :  9.49 %
      Favored  : 86.86 %
    Rotamer:
      Outliers :  0.81 %
      Allowed  :  0.00 %
      Favored  : 99.19 %
    Cbeta Deviations :  2.27 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.00 %
      Twisted Proline : 28.57 %
      Twisted General : 0.00 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -0.42 (0.69), residues: 137
    helix:  1.66 (0.60), residues: 61
    sheet:  0.15 (1.58), residues: 12
    loop : -2.46 (0.72), residues: 64
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.007   0.002   HIS A  43 
   PHE   0.058   0.017   PHE A  67 
   TYR   0.108   0.023   TYR A  68 
   ARG   0.076   0.013   ARG A  21 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.007   0.002   HIS A  43 
   PHE   0.026   0.010   PHE A  67 
   TYR   0.092   0.019   TYR A  68 
   ARG   0.017   0.005   ARG A 127 

                     ----------Asn/Gln/His flips----------                     

  No backwards Asn/Gln/His sidechains found.

=================================== Summary ===================================


End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000 (Z=  0.002)
  Max. delta:    0.056 (Z=  3.578)
  Mean delta:    0.017 (Z=  0.883)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  43  HIS  CA
   A  43  HIS  CB
   A  43  HIS  CG        113.80   121.64    -7.84  1.00e+00  6.15e+01   7.8*sigma
   A  96  GLY  C
   A  97  SER  N
   A  97  SER  CA        121.70   131.88   -10.18  1.80e+00  3.20e+01   5.7*sigma
   A 113  LYS  CA
   A 113  LYS  C
   A 114  PRO  N         116.90   125.16    -8.26  1.50e+00  3.03e+01   5.5*sigma
   A  61  LEU  CD1
   A  61  LEU  CG
   A  61  LEU  CD2       110.80    98.85    11.95  2.20e+00  2.95e+01   5.4*sigma
   A 116  ASP  CA
   A 116  ASP  C
   A 117  PRO  N         116.90   124.45    -7.55  1.50e+00  2.53e+01   5.0*sigma
   A  43  HIS  ND1
   A  43  HIS  CG
   A  43  HIS  CD2       106.10   110.65    -4.55  1.00e+00  2.07e+01   4.5*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.61    -4.51  1.00e+00  2.03e+01   4.5*sigma
   A  21  ARG  CA
   A  21  ARG  C
   A  22  PRO  N         116.90   123.56    -6.66  1.50e+00  1.97e+01   4.4*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   110.53    -4.43  1.00e+00  1.96e+01   4.4*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.48    -4.38  1.00e+00  1.92e+01   4.4*sigma
   A 136  HIS  ND1
   A 136  HIS  CG
   A 136  HIS  CD2       106.10   110.46    -4.36  1.00e+00  1.90e+01   4.4*sigma
   A 101  LYS  CA
   A 101  LYS  C
   A 102  PRO  N         116.90   123.42    -6.52  1.50e+00  1.89e+01   4.3*sigma
   A 134  HIS  ND1
   A 134  HIS  CG
   A 134  HIS  CD2       106.10   110.36    -4.26  1.00e+00  1.82e+01   4.3*sigma
   A 111  TYR  C
   A 111  TYR  CA
   A 111  TYR  CB        110.10   102.09     8.01  1.90e+00  1.78e+01   4.2*sigma
   A 138  HIS  ND1
   A 138  HIS  CG
   A 138  HIS  CD2       106.10   110.13    -4.03  1.00e+00  1.62e+01   4.0*sigma
   A  53  LEU  CD1
   A  53  LEU  CG
   A  53  LEU  CD2       110.80   102.00     8.80  2.20e+00  1.60e+01   4.0*sigma

  Min. delta:    0.003 (Z=  0.002)
  Max. delta:   11.951 (Z=  7.845)
  Mean delta:    2.323 (Z=  1.293)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 117  PRO  CA
   A 117  PRO  C
   A 118  ASP  N
   A 118  ASP  CA        180.00   125.99    54.01  5.00e+00  1.17e+02  10.8*sigma

  Min. delta:    0.022
  Max. delta:   62.215
  Mean delta:   10.674

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.329
  Mean delta:    0.101

                       ----------Planar groups----------                       

  atoms                 rms_deltas   delta_max    residual   deviation
   A 111  TYR  CB
   A 111  TYR  CG
   A 111  TYR  CD1
   A 111  TYR  CD2
   A 111  TYR  CE1
   A 111  TYR  CE2
   A 111  TYR  CZ
   A 111  TYR  OH            0.069       0.110       94.67   5.5*sigma
   A  12  TYR  CB
   A  12  TYR  CG
   A  12  TYR  CD1
   A  12  TYR  CD2
   A  12  TYR  CE1
   A  12  TYR  CE2
   A  12  TYR  CZ
   A  12  TYR  OH            0.049       0.087       48.23   4.3*sigma

  Min. delta:    0.000
  Max. delta:    0.095
  Mean delta:    0.015

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.012   0.056   2241  Z= 0.628
    Angle     :  2.049  11.951   4077  Z= 0.933
    Chirality :  0.101   0.329    176
    Planarity :  0.013   0.099    326
    Dihedral  :  9.881  62.215    768
    Min Nonbonded Distance : 1.539
  
  Molprobity Statistics.
    All-atom Clashscore : 4.06
    Ramachandran Plot:
      Outliers :  5.84 %
      Allowed  : 10.22 %
      Favored  : 83.94 %
    Rotamer:
      Outliers :  0.00 %
      Allowed  :  0.00 %
      Favored  : 100.00 %
    Cbeta Deviations :  0.00 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.00 %
      Twisted Proline : 0.00 %
      Twisted General : 0.76 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -0.82 (0.73), residues: 137
    helix:  0.93 (0.66), residues: 63
    sheet:  0.06 (1.79), residues: 10
    loop : -2.28 (0.77), residues: 64
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.006   0.002   HIS A 139 
   PHE   0.086   0.021   PHE A  45 
   TYR   0.205   0.029   TYR A 111 
   ARG   0.030   0.012   ARG A  21 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.006   0.002   HIS A 139 
   PHE   0.042   0.013   PHE A  45 
   TYR   0.110   0.024   TYR A 111 
   ARG   0.014   0.006   ARG A 127 

                     ----------Asn/Gln/His flips----------                     

  No backwards Asn/Gln/His sidechains found.

=================================== Summary ===================================

  Ramachandran outliers =   3.65 %
                favored =  86.86 %
  Rotamer outliers      =   0.81 %
  C-beta deviations     =     3
  Clashscore            =   1.80
  RMS(bonds)            =   0.0112
  RMS(angles)           =   2.00
  MolProbity score      =   1.56

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py
  Ramachandran outliers =   5.84 %
                favored =  83.94 %
  Rotamer outliers      =   0.00 %
  C-beta deviations     =     0
  Clashscore            =   4.06
  RMS(bonds)            =   0.0121
  RMS(angles)           =   2.05
  MolProbity score      =   1.87

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py

  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 1.14
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 1.28 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 113
        1.23 -     1.43: 355
        1.43 -     1.63: 663
        1.63 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" CD  ARG A  21 "
       model="   1" pdb=" NE  ARG A  21 "
    ideal  model  delta    sigma   weight residual
    1.458  1.507 -0.049 1.40e-02 5.10e+03 1.23e+01
  bond model="   1" pdb=" CE1 HIS A  43 "
       model="   1" pdb=" NE2 HIS A  43 "
    ideal  model  delta    sigma   weight residual
    1.321  1.356 -0.035 1.00e-02 1.00e+04 1.20e+01
  bond model="   1" pdb=" CE1 HIS A 136 "
       model="   1" pdb=" NE2 HIS A 136 "
    ideal  model  delta    sigma   weight residual
    1.321  1.355 -0.034 1.00e-02 1.00e+04 1.14e+01
  bond model="   1" pdb=" CE1 HIS A 138 "
       model="   1" pdb=" NE2 HIS A 138 "
    ideal  model  delta    sigma   weight residual
    1.321  1.354 -0.033 1.00e-02 1.00e+04 1.07e+01
  bond model="   1" pdb=" CE1 HIS A 139 "
       model="   1" pdb=" NE2 HIS A 139 "
    ideal  model  delta    sigma   weight residual
    1.321  1.354 -0.033 1.00e-02 1.00e+04 1.06e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       96.51 -   104.54: 71
      104.54 -   112.57: 2541
      112.57 -   120.60: 883
      120.60 -   128.63: 572
      128.63 -   136.66: 10
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" CB  HIS A  43 "
        model="   1" pdb=" CG  HIS A  43 "
        model="   1" pdb=" ND1 HIS A  43 "
      ideal   model   delta    sigma   weight residual
     122.70  112.60   10.10 1.50e+00 4.44e-01 4.53e+01
  angle model="   1" pdb=" CA  ILE A  51 "
        model="   1" pdb=" C   ILE A  51 "
        model="   1" pdb=" N   PRO A  52 "
      ideal   model   delta    sigma   weight residual
     116.90  126.84   -9.94 1.50e+00 4.44e-01 4.39e+01
  angle model="   1" pdb=" C   ILE A  86 "
        model="   1" pdb=" CA  ILE A  86 "
        model="   1" pdb=" CB  ILE A  86 "
      ideal   model   delta    sigma   weight residual
     111.60  123.00  -11.40 2.00e+00 2.50e-01 3.25e+01
  angle model="   1" pdb=" CA  LYS A 113 "
        model="   1" pdb=" C   LYS A 113 "
        model="   1" pdb=" N   PRO A 114 "
      ideal   model   delta    sigma   weight residual
     116.90  124.64   -7.74 1.50e+00 4.44e-01 2.67e+01
  angle model="   1" pdb=" N   ILE A  86 "
        model="   1" pdb=" CA  ILE A  86 "
        model="   1" pdb=" CB  ILE A  86 "
      ideal   model   delta    sigma   weight residual
     111.50  103.22    8.28 1.70e+00 3.46e-01 2.37e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    17.41: 980
       17.41 -    34.83: 37
       34.83 -    52.24: 10
       52.24 -    69.65: 3
       69.65 -    87.06: 2
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" N   ASP A 118 "
           model="   1" pdb=" C   ASP A 118 "
           model="   1" pdb=" CA  ASP A 118 "
           model="   1" pdb=" CB  ASP A 118 "
      ideal   model   delta  harmonic     sigma   weight residual
     122.80  138.06  -15.26     0      2.50e+00 1.60e-01 3.72e+01
  dihedral model="   1" pdb=" C   THR A  82 "
           model="   1" pdb=" N   THR A  82 "
           model="   1" pdb=" CA  THR A  82 "
           model="   1" pdb=" CB  THR A  82 "
      ideal   model   delta  harmonic     sigma   weight residual
    -122.00 -136.25   14.25     0      2.50e+00 1.60e-01 3.25e+01
  dihedral model="   1" pdb=" C   ASP A 118 "
           model="   1" pdb=" N   ASP A 118 "
           model="   1" pdb=" CA  ASP A 118 "
           model="   1" pdb=" CB  ASP A 118 "
      ideal   model   delta  harmonic     sigma   weight residual
    -122.60 -135.95   13.35     0      2.50e+00 1.60e-01 2.85e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.000 -    0.114: 144
       0.114 -    0.227: 25
       0.227 -    0.340: 5
       0.340 -    0.453: 0
       0.453 -    0.566: 2
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  ASP A 118 "
            model="   1" pdb=" N   ASP A 118 "
            model="   1" pdb=" C   ASP A 118 "
            model="   1" pdb=" CB  ASP A 118 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    1.94    0.57 2.00e-01 2.50e+01 8.02e+00
  chirality model="   1" pdb=" CA  THR A  82 "
            model="   1" pdb=" N   THR A  82 "
            model="   1" pdb=" C   THR A  82 "
            model="   1" pdb=" CB  THR A  82 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.53    2.00    0.52 2.00e-01 2.50e+01 6.85e+00
  chirality model="   1" pdb=" CA  SER A  46 "
            model="   1" pdb=" N   SER A  46 "
            model="   1" pdb=" C   SER A  46 "
            model="   1" pdb=" CB  SER A  46 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.18    0.33 2.00e-01 2.50e+01 2.66e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A 111 "   -0.187 2.00e-02 2.50e+03   1.01e-01 3.04e+02
        model="   1" pdb=" CG  TYR A 111 "    0.047 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A 111 "    0.080 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A 111 "    0.033 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A 111 "   -0.060 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A 111 "   -0.011 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A 111 "   -0.055 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A 111 "    0.077 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A 111 "    0.192 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A 111 "    0.053 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A 111 "   -0.156 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A 111 "   -0.011 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  PHE A  15 "    0.046 2.00e-02 2.50e+03   8.89e-02 2.37e+02
        model="   1" pdb=" CG  PHE A  15 "    0.010 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 PHE A  15 "   -0.059 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 PHE A  15 "    0.036 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 PHE A  15 "    0.048 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 PHE A  15 "   -0.046 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  PHE A  15 "    0.007 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 PHE A  15 "   -0.176 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 PHE A  15 "    0.108 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 PHE A  15 "    0.148 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 PHE A  15 "   -0.136 2.00e-02 2.50e+03
        model="   1" pdb=" HZ  PHE A  15 "    0.014 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  50 "   -0.021 2.00e-02 2.50e+03   6.27e-02 1.18e+02
        model="   1" pdb=" CG  TYR A  50 "   -0.066 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  50 "   -0.028 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  50 "    0.018 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  50 "    0.047 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  50 "    0.000 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  50 "   -0.001 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  50 "   -0.104 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  50 "   -0.054 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  50 "    0.087 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  50 "    0.132 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  50 "   -0.011 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.72 -     2.29: 314
        2.29 -     2.87: 4972
        2.87 -     3.45: 5046
        3.45 -     4.02: 6422
        4.02 -     4.60: 9586
  Nonbonded interactions: 26340
  Sorted by model distance:
  nonbonded model="   1" pdb="HD13 LEU A  53 "
            model="   1" pdb="HG11 VAL A  57 "
     model   vdw
     1.716 2.440
  nonbonded model="   1" pdb=" HZ1 LYS A  10 "
            model="   1" pdb=" OD1 ASP A  23 "
     model   vdw
     1.726 1.850
  nonbonded model="   1" pdb="HE21 GLN A 100 "
            model="   1" pdb="HG12 VAL A 104 "
     model   vdw
     1.783 2.270
  nonbonded model="   1" pdb=" OE1 GLU A   8 "
            model="   1" pdb="HH21 ARG A  58 "
     model   vdw
     1.851 1.850
  nonbonded model="   1" pdb=" HB2 GLU A  75 "
            model="   1" pdb="HG22 ILE A  86 "
     model   vdw
     1.868 2.440
  ... (remaining 26335 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 0.92
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 1.04 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.


  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 1.11
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 1.24 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 138
        1.23 -     1.43: 334
        1.43 -     1.63: 659
        1.63 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" C   SER A  98 "
       model="   1" pdb=" N   LEU A  99 "
    ideal  model  delta    sigma   weight residual
    1.329  1.396 -0.067 1.40e-02 5.10e+03 2.27e+01
  bond model="   1" pdb=" N   PRO A 102 "
       model="   1" pdb=" CD  PRO A 102 "
    ideal  model  delta    sigma   weight residual
    1.473  1.423  0.050 1.40e-02 5.10e+03 1.29e+01
  bond model="   1" pdb=" CD  ARG A  21 "
       model="   1" pdb=" NE  ARG A  21 "
    ideal  model  delta    sigma   weight residual
    1.458  1.508 -0.050 1.40e-02 5.10e+03 1.29e+01
  bond model="   1" pdb=" CE1 HIS A 139 "
       model="   1" pdb=" NE2 HIS A 139 "
    ideal  model  delta    sigma   weight residual
    1.321  1.357 -0.036 1.00e-02 1.00e+04 1.28e+01
  bond model="   1" pdb=" C   SER A  98 "
       model="   1" pdb=" O   SER A  98 "
    ideal  model  delta    sigma   weight residual
    1.231  1.160  0.071 2.00e-02 2.50e+03 1.27e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       96.14 -   103.63: 29
      103.63 -   111.13: 2343
      111.13 -   118.62: 798
      118.62 -   126.11: 871
      126.11 -   133.60: 36
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" CA  ASP A  29 "
        model="   1" pdb=" CB  ASP A  29 "
        model="   1" pdb=" CG  ASP A  29 "
      ideal   model   delta    sigma   weight residual
     112.60  119.43   -6.83 1.00e+00 1.00e+00 4.67e+01
  angle model="   1" pdb=" CA  LYS A 101 "
        model="   1" pdb=" C   LYS A 101 "
        model="   1" pdb=" N   PRO A 102 "
      ideal   model   delta    sigma   weight residual
     116.90  123.90   -7.00 1.50e+00 4.44e-01 2.18e+01
  angle model="   1" pdb=" C   VAL A 126 "
        model="   1" pdb=" N   ARG A 127 "
        model="   1" pdb=" CA  ARG A 127 "
      ideal   model   delta    sigma   weight residual
     121.70  129.84   -8.14 1.80e+00 3.09e-01 2.04e+01
  angle model="   1" pdb=" C   ASP A  44 "
        model="   1" pdb=" CA  ASP A  44 "
        model="   1" pdb=" CB  ASP A  44 "
      ideal   model   delta    sigma   weight residual
     110.10  118.64   -8.54 1.90e+00 2.77e-01 2.02e+01
  angle model="   1" pdb=" ND1 HIS A  43 "
        model="   1" pdb=" CG  HIS A  43 "
        model="   1" pdb=" CD2 HIS A  43 "
      ideal   model   delta    sigma   weight residual
     106.10  110.57   -4.47 1.00e+00 1.00e+00 2.00e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    11.81: 928
       11.81 -    23.62: 71
       23.62 -    35.43: 19
       35.43 -    47.24: 9
       47.24 -    59.04: 5
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" CA  LYS A 113 "
           model="   1" pdb=" C   LYS A 113 "
           model="   1" pdb=" N   PRO A 114 "
           model="   1" pdb=" CA  PRO A 114 "
      ideal   model   delta  harmonic     sigma   weight residual
    -180.00 -147.41  -32.59     0      5.00e+00 4.00e-02 4.25e+01
  dihedral model="   1" pdb=" CA  SER A  98 "
           model="   1" pdb=" C   SER A  98 "
           model="   1" pdb=" N   LEU A  99 "
           model="   1" pdb=" CA  LEU A  99 "
      ideal   model   delta  harmonic     sigma   weight residual
    -180.00 -153.24  -26.76     0      5.00e+00 4.00e-02 2.86e+01
  dihedral model="   1" pdb=" C   TYR A  81 "
           model="   1" pdb=" N   TYR A  81 "
           model="   1" pdb=" CA  TYR A  81 "
           model="   1" pdb=" CB  TYR A  81 "
      ideal   model   delta  harmonic     sigma   weight residual
    -122.60 -134.72   12.12     0      2.50e+00 1.60e-01 2.35e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.002 -    0.092: 117
       0.092 -    0.183: 43
       0.183 -    0.274: 13
       0.274 -    0.364: 1
       0.364 -    0.455: 2
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  PRO A 114 "
            model="   1" pdb=" N   PRO A 114 "
            model="   1" pdb=" C   PRO A 114 "
            model="   1" pdb=" CB  PRO A 114 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.72    2.26    0.45 2.00e-01 2.50e+01 5.17e+00
  chirality model="   1" pdb=" CA  TYR A  81 "
            model="   1" pdb=" N   TYR A  81 "
            model="   1" pdb=" C   TYR A  81 "
            model="   1" pdb=" CB  TYR A  81 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.11    0.40 2.00e-01 2.50e+01 4.06e+00
  chirality model="   1" pdb=" CB  ILE A  78 "
            model="   1" pdb=" CA  ILE A  78 "
            model="   1" pdb=" CG1 ILE A  78 "
            model="   1" pdb=" CG2 ILE A  78 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.64    2.35    0.29 2.00e-01 2.50e+01 2.16e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  PHE A  45 "    0.051 2.00e-02 2.50e+03   5.92e-02 1.05e+02
        model="   1" pdb=" CG  PHE A  45 "   -0.025 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 PHE A  45 "    0.012 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 PHE A  45 "   -0.045 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 PHE A  45 "   -0.019 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 PHE A  45 "    0.039 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  PHE A  45 "   -0.006 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 PHE A  45 "    0.059 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 PHE A  45 "   -0.113 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 PHE A  45 "   -0.049 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 PHE A  45 "    0.124 2.00e-02 2.50e+03
        model="   1" pdb=" HZ  PHE A  45 "   -0.027 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  PHE A  67 "    0.112 2.00e-02 2.50e+03   4.88e-02 7.14e+01
        model="   1" pdb=" CG  PHE A  67 "    0.001 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 PHE A  67 "   -0.026 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 PHE A  67 "   -0.025 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 PHE A  67 "   -0.007 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 PHE A  67 "   -0.010 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  PHE A  67 "    0.030 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 PHE A  67 "   -0.058 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 PHE A  67 "   -0.052 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 PHE A  67 "   -0.018 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 PHE A  67 "   -0.027 2.00e-02 2.50e+03
        model="   1" pdb=" HZ  PHE A  67 "    0.081 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  PHE A  15 "    0.106 2.00e-02 2.50e+03   4.84e-02 7.03e+01
        model="   1" pdb=" CG  PHE A  15 "    0.019 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 PHE A  15 "   -0.017 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 PHE A  15 "   -0.031 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 PHE A  15 "   -0.011 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 PHE A  15 "    0.001 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  PHE A  15 "    0.025 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 PHE A  15 "   -0.045 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 PHE A  15 "   -0.087 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 PHE A  15 "   -0.030 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 PHE A  15 "    0.007 2.00e-02 2.50e+03
        model="   1" pdb=" HZ  PHE A  15 "    0.064 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.74 -     2.31: 350
        2.31 -     2.88: 5114
        2.88 -     3.45: 5145
        3.45 -     4.03: 6577
        4.03 -     4.60: 9974
  Nonbonded interactions: 27160
  Sorted by model distance:
  nonbonded model="   1" pdb=" OE1 GLU A  55 "
            model="   1" pdb=" HE  ARG A  58 "
     model   vdw
     1.736 1.850
  nonbonded model="   1" pdb=" OE2 GLU A  55 "
            model="   1" pdb="HH21 ARG A  58 "
     model   vdw
     1.737 1.850
  nonbonded model="   1" pdb=" OE2 GLU A  16 "
            model="   1" pdb=" HZ2 LYS A  19 "
     model   vdw
     1.797 1.850
  nonbonded model="   1" pdb=" O   PRO A 102 "
            model="   1" pdb=" H   ALA A 106 "
     model   vdw
     1.825 1.850
  nonbonded model="   1" pdb=" OD1 ASP A  44 "
            model="   1" pdb=" H   SER A  46 "
     model   vdw
     1.857 1.850
  ... (remaining 27155 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.
  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 137
        1.23 -     1.43: 333
        1.43 -     1.63: 661
        1.63 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" CE1 HIS A 139 "
       model="   1" pdb=" NE2 HIS A 139 "
    ideal  model  delta    sigma   weight residual
    1.321  1.357 -0.036 1.00e-02 1.00e+04 1.28e+01
  bond model="   1" pdb=" CE1 HIS A  43 "
       model="   1" pdb=" NE2 HIS A  43 "
    ideal  model  delta    sigma   weight residual
    1.321  1.356 -0.035 1.00e-02 1.00e+04 1.24e+01
  bond model="   1" pdb=" CE1 HIS A 135 "
       model="   1" pdb=" NE2 HIS A 135 "
    ideal  model  delta    sigma   weight residual
    1.321  1.354 -0.033 1.00e-02 1.00e+04 1.11e+01
  bond model="   1" pdb=" CE1 HIS A 136 "
       model="   1" pdb=" NE2 HIS A 136 "
    ideal  model  delta    sigma   weight residual
    1.321  1.354 -0.033 1.00e-02 1.00e+04 1.11e+01
  bond model="   1" pdb=" CE1 HIS A 134 "
       model="   1" pdb=" NE2 HIS A 134 "
    ideal  model  delta    sigma   weight residual
    1.321  1.354 -0.033 1.00e-02 1.00e+04 1.10e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       95.94 -   103.90: 56
      103.90 -   111.86: 2448
      111.86 -   119.82: 803
      119.82 -   127.78: 757
      127.78 -   135.74: 13
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" C   HIS A 136 "
        model="   1" pdb=" N   HIS A 137 "
        model="   1" pdb=" CA  HIS A 137 "
      ideal   model   delta    sigma   weight residual
     121.70  135.74  -14.04 1.80e+00 3.09e-01 6.08e+01
  angle model="   1" pdb=" C   ILE A 131 "
        model="   1" pdb=" N   LEU A 132 "
        model="   1" pdb=" CA  LEU A 132 "
      ideal   model   delta    sigma   weight residual
     121.70  135.55  -13.85 1.80e+00 3.09e-01 5.92e+01
  angle model="   1" pdb=" CA  ASP A 116 "
        model="   1" pdb=" C   ASP A 116 "
        model="   1" pdb=" N   PRO A 117 "
      ideal   model   delta    sigma   weight residual
     116.90  127.78  -10.88 1.50e+00 4.44e-01 5.26e+01
  angle model="   1" pdb=" C   ARG A 129 "
        model="   1" pdb=" N   SER A 130 "
        model="   1" pdb=" CA  SER A 130 "
      ideal   model   delta    sigma   weight residual
     121.70  134.67  -12.97 1.80e+00 3.09e-01 5.19e+01
  angle model="   1" pdb=" C   ARG A 127 "
        model="   1" pdb=" N   MET A 128 "
        model="   1" pdb=" CA  MET A 128 "
      ideal   model   delta    sigma   weight residual
     121.70  134.29  -12.59 1.80e+00 3.09e-01 4.89e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    15.41: 950
       15.41 -    30.82: 54
       30.82 -    46.23: 20
       46.23 -    61.65: 5
       61.65 -    77.06: 3
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" CA  HIS A 134 "
           model="   1" pdb=" C   HIS A 134 "
           model="   1" pdb=" N   HIS A 135 "
           model="   1" pdb=" CA  HIS A 135 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  102.94   77.06     0      5.00e+00 4.00e-02 2.38e+02
  dihedral model="   1" pdb=" CA  GLU A 133 "
           model="   1" pdb=" C   GLU A 133 "
           model="   1" pdb=" N   HIS A 134 "
           model="   1" pdb=" CA  HIS A 134 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  116.40   63.60     0      5.00e+00 4.00e-02 1.62e+02
  dihedral model="   1" pdb=" CA  GLY A  94 "
           model="   1" pdb=" C   GLY A  94 "
           model="   1" pdb=" N   ASP A  95 "
           model="   1" pdb=" CA  ASP A  95 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  127.13   52.87     0      5.00e+00 4.00e-02 1.12e+02
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.000 -    0.121: 138
       0.121 -    0.242: 22
       0.242 -    0.362: 7
       0.362 -    0.483: 6
       0.483 -    0.603: 3
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  GLU A 133 "
            model="   1" pdb=" N   GLU A 133 "
            model="   1" pdb=" C   GLU A 133 "
            model="   1" pdb=" CB  GLU A 133 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    1.91    0.60 2.00e-01 2.50e+01 9.10e+00
  chirality model="   1" pdb=" CA  LEU A 119 "
            model="   1" pdb=" N   LEU A 119 "
            model="   1" pdb=" C   LEU A 119 "
            model="   1" pdb=" CB  LEU A 119 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    1.95    0.56 2.00e-01 2.50e+01 7.94e+00
  chirality model="   1" pdb=" CB  ILE A 122 "
            model="   1" pdb=" CA  ILE A 122 "
            model="   1" pdb=" CG1 ILE A 122 "
            model="   1" pdb=" CG2 ILE A 122 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.64    2.14    0.50 2.00e-01 2.50e+01 6.28e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  HIS A 135 "    0.085 2.00e-02 2.50e+03   5.04e-02 5.09e+01
        model="   1" pdb=" CG  HIS A 135 "   -0.081 2.00e-02 2.50e+03
        model="   1" pdb=" ND1 HIS A 135 "   -0.061 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 HIS A 135 "   -0.015 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 HIS A 135 "    0.008 2.00e-02 2.50e+03
        model="   1" pdb=" NE2 HIS A 135 "    0.038 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 HIS A 135 "   -0.007 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 HIS A 135 "    0.033 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A 111 "    0.071 2.00e-02 2.50e+03   3.94e-02 4.65e+01
        model="   1" pdb=" CG  TYR A 111 "    0.012 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A 111 "   -0.009 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A 111 "   -0.015 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A 111 "   -0.022 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A 111 "   -0.010 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A 111 "    0.014 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A 111 "    0.086 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A 111 "   -0.015 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A 111 "   -0.035 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A 111 "   -0.054 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A 111 "   -0.023 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  PHE A  15 "    0.038 2.00e-02 2.50e+03   3.80e-02 4.33e+01
        model="   1" pdb=" CG  PHE A  15 "    0.017 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 PHE A  15 "   -0.024 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 PHE A  15 "    0.010 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 PHE A  15 "    0.013 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 PHE A  15 "   -0.023 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  PHE A  15 "    0.014 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 PHE A  15 "   -0.077 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 PHE A  15 "    0.026 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 PHE A  15 "    0.036 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 PHE A  15 "   -0.068 2.00e-02 2.50e+03
        model="   1" pdb=" HZ  PHE A  15 "    0.039 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.69 -     2.27: 259
        2.27 -     2.85: 4827
        2.85 -     3.44: 5361
        3.44 -     4.02: 6516
        4.02 -     4.60: 9828
  Nonbonded interactions: 26791
  Sorted by model distance:
  nonbonded model="   1" pdb=" OD2 ASP A  88 "
            model="   1" pdb=" HZ3 LYS A 101 "
     model   vdw
     1.688 1.850
  nonbonded model="   1" pdb=" OE2 GLU A  16 "
            model="   1" pdb=" HZ2 LYS A  19 "
     model   vdw
     1.747 1.850
  nonbonded model="   1" pdb="HG23 VAL A  41 "
            model="   1" pdb=" H   HIS A  43 "
     model   vdw
     1.852 2.270
  nonbonded model="   1" pdb=" HE2 TYR A  12 "
            model="   1" pdb="HE22 GLN A  66 "
     model   vdw
     1.894 2.100
  nonbonded model="   1" pdb=" HB3 LEU A  99 "
            model="   1" pdb=" H   GLN A 100 "
     model   vdw
     1.909 2.270
  ... (remaining 26786 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 0.96
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 1.09 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.


  Number of disulfides: simple=0, symmetry=0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0
  Custom bonds:
    Warning: Ignoring bond with distance_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
    Total number of added/changed bonds: 0
  Custom angles:
    Warning: Ignoring angle with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
    Total number of new custom angles: 0
    Total number of changed angles: 0
  Custom dihedrals:
    Warning: Ignoring dihedral with angle_ideal = None:
      atom_selection_1 = None
      atom_selection_2 = None
      atom_selection_3 = None
      atom_selection_4 = None
    Total number of custom dihedrals: 0
  Custom planarities:
    Warning: Ignoring planarity with with sigma <= 0:
    Total number of custom planarities: 0
  Custom parallelities:
    Warning: Ignoring parallelity with empty atom selection.
    Total number of custom parallelities: 0

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 1.00
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  264

  Time building geometry restraints manager: 1.13 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 103
        1.23 -     1.43: 371
        1.43 -     1.62: 657
        1.62 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" CE1 HIS A 137 "
       model="   1" pdb=" NE2 HIS A 137 "
    ideal  model  delta    sigma   weight residual
    1.321  1.357 -0.036 1.00e-02 1.00e+04 1.32e+01
  bond model="   1" pdb=" CE1 HIS A 139 "
       model="   1" pdb=" NE2 HIS A 139 "
    ideal  model  delta    sigma   weight residual
    1.321  1.357 -0.036 1.00e-02 1.00e+04 1.32e+01
  bond model="   1" pdb=" CE1 HIS A 138 "
       model="   1" pdb=" NE2 HIS A 138 "
    ideal  model  delta    sigma   weight residual
    1.321  1.357 -0.036 1.00e-02 1.00e+04 1.28e+01
  bond model="   1" pdb=" CE1 HIS A 134 "
       model="   1" pdb=" NE2 HIS A 134 "
    ideal  model  delta    sigma   weight residual
    1.321  1.356 -0.035 1.00e-02 1.00e+04 1.23e+01
  bond model="   1" pdb=" CE1 HIS A 135 "
       model="   1" pdb=" NE2 HIS A 135 "
    ideal  model  delta    sigma   weight residual
    1.321  1.356 -0.035 1.00e-02 1.00e+04 1.22e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       97.76 -   105.39: 107
      105.39 -   113.02: 2593
      113.02 -   120.66: 810
      120.66 -   128.29: 557
      128.29 -   135.92: 10
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" C   HIS A 135 "
        model="   1" pdb=" N   HIS A 136 "
        model="   1" pdb=" CA  HIS A 136 "
      ideal   model   delta    sigma   weight residual
     121.70  135.92  -14.22 1.80e+00 3.09e-01 6.24e+01
  angle model="   1" pdb=" CA  ASP A  29 "
        model="   1" pdb=" CB  ASP A  29 "
        model="   1" pdb=" CG  ASP A  29 "
      ideal   model   delta    sigma   weight residual
     112.60  118.77   -6.17 1.00e+00 1.00e+00 3.80e+01
  angle model="   1" pdb=" CA  HIS A 137 "
        model="   1" pdb=" CB  HIS A 137 "
        model="   1" pdb=" CG  HIS A 137 "
      ideal   model   delta    sigma   weight residual
     113.80  119.27   -5.47 1.00e+00 1.00e+00 3.00e+01
  angle model="   1" pdb=" C   HIS A 138 "
        model="   1" pdb=" N   HIS A 139 "
        model="   1" pdb=" CA  HIS A 139 "
      ideal   model   delta    sigma   weight residual
     121.70  130.77   -9.07 1.80e+00 3.09e-01 2.54e+01
  angle model="   1" pdb=" ND1 HIS A 137 "
        model="   1" pdb=" CG  HIS A 137 "
        model="   1" pdb=" CD2 HIS A 137 "
      ideal   model   delta    sigma   weight residual
     106.10  110.81   -4.71 1.00e+00 1.00e+00 2.22e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    19.01: 983
       19.01 -    38.03: 35
       38.03 -    57.04: 10
       57.04 -    76.05: 3
       76.05 -    95.07: 1
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" CA  HIS A 136 "
           model="   1" pdb=" C   HIS A 136 "
           model="   1" pdb=" N   HIS A 137 "
           model="   1" pdb=" CA  HIS A 137 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00   84.93   95.07     0      5.00e+00 4.00e-02 3.62e+02
  dihedral model="   1" pdb=" CA  ASP A 118 "
           model="   1" pdb=" C   ASP A 118 "
           model="   1" pdb=" N   LEU A 119 "
           model="   1" pdb=" CA  LEU A 119 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  145.11   34.89     0      5.00e+00 4.00e-02 4.87e+01
  dihedral model="   1" pdb=" CA  GLU A  75 "
           model="   1" pdb=" C   GLU A  75 "
           model="   1" pdb=" N   SER A  76 "
           model="   1" pdb=" CA  SER A  76 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  150.63   29.37     0      5.00e+00 4.00e-02 3.45e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.001 -    0.064: 94
       0.064 -    0.127: 57
       0.127 -    0.190: 17
       0.190 -    0.253: 4
       0.253 -    0.316: 4
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  HIS A 138 "
            model="   1" pdb=" N   HIS A 138 "
            model="   1" pdb=" C   HIS A 138 "
            model="   1" pdb=" CB  HIS A 138 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.19    0.32 2.00e-01 2.50e+01 2.50e+00
  chirality model="   1" pdb=" CA  SER A  76 "
            model="   1" pdb=" N   SER A  76 "
            model="   1" pdb=" C   SER A  76 "
            model="   1" pdb=" CB  SER A  76 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.24    0.27 2.00e-01 2.50e+01 1.88e+00
  chirality model="   1" pdb=" CA  PRO A 102 "
            model="   1" pdb=" N   PRO A 102 "
            model="   1" pdb=" C   PRO A 102 "
            model="   1" pdb=" CB  PRO A 102 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.72    2.45    0.27 2.00e-01 2.50e+01 1.79e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  PHE A  45 "   -0.120 2.00e-02 2.50e+03   6.21e-02 1.16e+02
        model="   1" pdb=" CG  PHE A  45 "    0.005 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 PHE A  45 "    0.046 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 PHE A  45 "    0.009 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 PHE A  45 "   -0.011 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 PHE A  45 "    0.029 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  PHE A  45 "   -0.031 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 PHE A  45 "    0.112 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 PHE A  45 "   -0.002 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 PHE A  45 "   -0.036 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 PHE A  45 "    0.083 2.00e-02 2.50e+03
        model="   1" pdb=" HZ  PHE A  45 "   -0.085 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  68 "    0.033 2.00e-02 2.50e+03   2.69e-02 2.17e+01
        model="   1" pdb=" CG  TYR A  68 "   -0.005 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  68 "    0.001 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  68 "   -0.009 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  68 "   -0.019 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  68 "   -0.009 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  68 "    0.004 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  68 "    0.063 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  68 "    0.017 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  68 "   -0.013 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  68 "   -0.047 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  68 "   -0.017 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  91 "    0.002 2.00e-02 2.50e+03   2.37e-02 1.69e+01
        model="   1" pdb=" CG  TYR A  91 "   -0.014 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  91 "   -0.013 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  91 "    0.004 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  91 "    0.019 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  91 "    0.002 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  91 "   -0.001 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  91 "   -0.040 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  91 "   -0.034 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  91 "    0.019 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  91 "    0.054 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  91 "    0.001 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.64 -     2.23: 155
        2.23 -     2.82: 4510
        2.82 -     3.41: 5382
        3.41 -     4.01: 6480
        4.01 -     4.60: 9868
  Nonbonded interactions: 26395
  Sorted by model distance:
  nonbonded model="   1" pdb=" OE2 GLU A  16 "
            model="   1" pdb=" HZ2 LYS A  19 "
     model   vdw
     1.636 1.850
  nonbonded model="   1" pdb=" HZ1 LYS A  10 "
            model="   1" pdb=" OD1 ASP A  23 "
     model   vdw
     1.696 1.850
  nonbonded model="   1" pdb=" OE1 GLU A  55 "
            model="   1" pdb=" HE  ARG A  58 "
     model   vdw
     1.805 1.850
  nonbonded model="   1" pdb=" OE2 GLU A  55 "
            model="   1" pdb="HH21 ARG A  58 "
     model   vdw
     1.821 1.850
  nonbonded model="   1" pdb="HH22 ARG A  21 "
            model="   1" pdb=" OD2 ASP A  29 "
     model   vdw
     1.825 1.850
  ... (remaining 26390 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.
  Histogram of bond lengths:
        0.84 -     1.04: 1106
        1.04 -     1.23: 106
        1.23 -     1.43: 358
        1.43 -     1.62: 667
        1.62 -     1.82: 4
  Bond restraints: 2241
  Sorted by residual:
  bond model="   1" pdb=" C   PRO A 117 "
       model="   1" pdb=" N   ASP A 118 "
    ideal  model  delta    sigma   weight residual
    1.329  1.389 -0.060 1.40e-02 5.10e+03 1.83e+01
  bond model="   1" pdb=" CE1 HIS A 135 "
       model="   1" pdb=" NE2 HIS A 135 "
    ideal  model  delta    sigma   weight residual
    1.321  1.354 -0.033 1.00e-02 1.00e+04 1.11e+01
  bond model="   1" pdb=" CE1 HIS A 137 "
       model="   1" pdb=" NE2 HIS A 137 "
    ideal  model  delta    sigma   weight residual
    1.321  1.354 -0.033 1.00e-02 1.00e+04 1.10e+01
  bond model="   1" pdb=" CE1 HIS A 138 "
       model="   1" pdb=" NE2 HIS A 138 "
    ideal  model  delta    sigma   weight residual
    1.321  1.354 -0.033 1.00e-02 1.00e+04 1.08e+01
  bond model="   1" pdb=" CE1 HIS A 134 "
       model="   1" pdb=" NE2 HIS A 134 "
    ideal  model  delta    sigma   weight residual
    1.321  1.353 -0.032 1.00e-02 1.00e+04 1.03e+01
  ... (remaining 2236 not shown)

  Histogram of bond angle deviations from ideal:
       97.47 -   104.17: 38
      104.17 -   110.87: 2263
      110.87 -   117.58: 791
      117.58 -   124.28: 909
      124.28 -   130.98: 76
  Bond angle restraints: 4077
  Sorted by residual:
  angle model="   1" pdb=" CA  ASP A 103 "
        model="   1" pdb=" CB  ASP A 103 "
        model="   1" pdb=" CG  ASP A 103 "
      ideal   model   delta    sigma   weight residual
     112.60  118.27   -5.67 1.00e+00 1.00e+00 3.22e+01
  angle model="   1" pdb=" CA  ILE A  51 "
        model="   1" pdb=" C   ILE A  51 "
        model="   1" pdb=" N   PRO A  52 "
      ideal   model   delta    sigma   weight residual
     116.90  124.91   -8.01 1.50e+00 4.44e-01 2.85e+01
  angle model="   1" pdb=" CA  ASP A  23 "
        model="   1" pdb=" CB  ASP A  23 "
        model="   1" pdb=" CG  ASP A  23 "
      ideal   model   delta    sigma   weight residual
     112.60  107.51    5.09 1.00e+00 1.00e+00 2.59e+01
  angle model="   1" pdb=" C   ASP A 103 "
        model="   1" pdb=" CA  ASP A 103 "
        model="   1" pdb=" CB  ASP A 103 "
      ideal   model   delta    sigma   weight residual
     110.10  101.31    8.79 1.90e+00 2.77e-01 2.14e+01
  angle model="   1" pdb=" ND1 HIS A 135 "
        model="   1" pdb=" CG  HIS A 135 "
        model="   1" pdb=" CD2 HIS A 135 "
      ideal   model   delta    sigma   weight residual
     106.10  110.63   -4.53 1.00e+00 1.00e+00 2.05e+01
  ... (remaining 4072 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    16.97: 994
       16.97 -    33.94: 26
       33.94 -    50.92: 9
       50.92 -    67.89: 0
       67.89 -    84.86: 3
  Dihedral angle restraints: 1032
    sinusoidal: 561
      harmonic: 471
  Sorted by residual:
  dihedral model="   1" pdb=" CA  ASP A 116 "
           model="   1" pdb=" C   ASP A 116 "
           model="   1" pdb=" N   PRO A 117 "
           model="   1" pdb=" CA  PRO A 117 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00 -147.60  -32.40     0      5.00e+00 4.00e-02 4.20e+01
  dihedral model="   1" pdb=" CA  PRO A 117 "
           model="   1" pdb=" C   PRO A 117 "
           model="   1" pdb=" N   ASP A 118 "
           model="   1" pdb=" CA  ASP A 118 "
      ideal   model   delta  harmonic     sigma   weight residual
     180.00  158.33   21.67     0      5.00e+00 4.00e-02 1.88e+01
  dihedral model="   1" pdb=" C   ILE A  77 "
           model="   1" pdb=" N   ILE A  77 "
           model="   1" pdb=" CA  ILE A  77 "
           model="   1" pdb=" CB  ILE A  77 "
      ideal   model   delta  harmonic     sigma   weight residual
    -122.00 -132.39   10.39     0      2.50e+00 1.60e-01 1.73e+01
  ... (remaining 1029 not shown)

  Histogram of chiral volume deviations from ideal:
       0.001 -    0.064: 102
       0.064 -    0.127: 51
       0.127 -    0.190: 16
       0.190 -    0.253: 4
       0.253 -    0.317: 3
  Chirality restraints: 176
  Sorted by residual:
  chirality model="   1" pdb=" CA  PRO A 117 "
            model="   1" pdb=" N   PRO A 117 "
            model="   1" pdb=" C   PRO A 117 "
            model="   1" pdb=" CB  PRO A 117 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.72    2.40    0.32 2.00e-01 2.50e+01 2.50e+00
  chirality model="   1" pdb=" CA  ILE A  77 "
            model="   1" pdb=" N   ILE A  77 "
            model="   1" pdb=" C   ILE A  77 "
            model="   1" pdb=" CB  ILE A  77 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.43    2.15    0.28 2.00e-01 2.50e+01 1.95e+00
  chirality model="   1" pdb=" CA  PRO A 102 "
            model="   1" pdb=" N   PRO A 102 "
            model="   1" pdb=" C   PRO A 102 "
            model="   1" pdb=" CB  PRO A 102 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.72    2.45    0.27 2.00e-01 2.50e+01 1.84e+00
  ... (remaining 173 not shown)

  Planarity restraints: 326
  Sorted by residual:
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  PHE A  15 "   -0.064 2.00e-02 2.50e+03   8.05e-02 1.94e+02
        model="   1" pdb=" CG  PHE A  15 "   -0.027 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 PHE A  15 "    0.046 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 PHE A  15 "   -0.026 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 PHE A  15 "   -0.020 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 PHE A  15 "    0.052 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  PHE A  15 "   -0.035 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 PHE A  15 "    0.140 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 PHE A  15 "   -0.077 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 PHE A  15 "   -0.053 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 PHE A  15 "    0.165 2.00e-02 2.50e+03
        model="   1" pdb=" HZ  PHE A  15 "   -0.101 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A 111 "   -0.122 2.00e-02 2.50e+03   5.34e-02 8.55e+01
        model="   1" pdb=" CG  TYR A 111 "    0.013 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A 111 "    0.026 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A 111 "    0.024 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A 111 "    0.019 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A 111 "    0.022 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A 111 "    0.004 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A 111 "   -0.114 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A 111 "    0.039 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A 111 "    0.033 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A 111 "    0.024 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A 111 "    0.032 2.00e-02 2.50e+03
                                              delta    sigma   weight rms_deltas residual
  plane model="   1" pdb=" CB  TYR A  91 "    0.101 2.00e-02 2.50e+03   4.12e-02 5.09e+01
        model="   1" pdb=" CG  TYR A  91 "    0.003 2.00e-02 2.50e+03
        model="   1" pdb=" CD1 TYR A  91 "   -0.021 2.00e-02 2.50e+03
        model="   1" pdb=" CD2 TYR A  91 "   -0.023 2.00e-02 2.50e+03
        model="   1" pdb=" CE1 TYR A  91 "   -0.008 2.00e-02 2.50e+03
        model="   1" pdb=" CE2 TYR A  91 "   -0.006 2.00e-02 2.50e+03
        model="   1" pdb=" CZ  TYR A  91 "    0.017 2.00e-02 2.50e+03
        model="   1" pdb=" OH  TYR A  91 "    0.061 2.00e-02 2.50e+03
        model="   1" pdb=" HD1 TYR A  91 "   -0.046 2.00e-02 2.50e+03
        model="   1" pdb=" HD2 TYR A  91 "   -0.051 2.00e-02 2.50e+03
        model="   1" pdb=" HE1 TYR A  91 "   -0.015 2.00e-02 2.50e+03
        model="   1" pdb=" HE2 TYR A  91 "   -0.011 2.00e-02 2.50e+03
  ... (remaining 323 not shown)

  Histogram of nonbonded interaction distances:
        1.70 -     2.28: 259
        2.28 -     2.86: 4924
        2.86 -     3.44: 5069
        3.44 -     4.02: 6440
        4.02 -     4.60: 9570
  Nonbonded interactions: 26262
  Sorted by model distance:
  nonbonded model="   1" pdb=" OD2 ASP A  36 "
            model="   1" pdb=" HH  TYR A  68 "
     model   vdw
     1.697 1.850
  nonbonded model="   1" pdb=" HZ3 LYS A  10 "
            model="   1" pdb=" OD1 ASP A  23 "
     model   vdw
     1.709 1.850
  nonbonded model="   1" pdb=" OE2 GLU A  55 "
            model="   1" pdb="HH21 ARG A  58 "
     model   vdw
     1.762 1.850
  nonbonded model="   1" pdb=" OE1 GLU A  55 "
            model="   1" pdb=" HE  ARG A  58 "
     model   vdw
     1.781 1.850
  nonbonded model="   1" pdb=" OD1 ASP A  44 "
            model="   1" pdb=" H   SER A  46 "
     model   vdw
     1.853 1.850
  ... (remaining 26257 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000 (Z=  0.000)
  Max. delta:    0.064 (Z=  3.872)
  Mean delta:    0.017 (Z=  0.885)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 101  LYS  CA
   A 101  LYS  C
   A 102  PRO  N         116.90   128.77   -11.87  1.50e+00  6.26e+01   7.9*sigma
   A   2  LEU  CD1
   A   2  LEU  CG
   A   2  LEU  CD2       110.80    97.40    13.40  2.20e+00  3.71e+01   6.1*sigma
   A 116  ASP  CA
   A 116  ASP  C
   A 117  PRO  N         116.90   125.95    -9.05  1.50e+00  3.64e+01   6.0*sigma
   A  30  ILE  CA
   A  30  ILE  CB
   A  30  ILE  CG1       110.40   120.02    -9.62  1.70e+00  3.20e+01   5.7*sigma
   A 138  HIS  ND1
   A 138  HIS  CG
   A 138  HIS  CD2       106.10   110.93    -4.83  1.00e+00  2.33e+01   4.8*sigma
   A  58  ARG  NE
   A  58  ARG  CZ
   A  58  ARG  NH2       119.20   123.47    -4.27  9.00e-01  2.25e+01   4.7*sigma
   A   2  LEU  CB
   A   2  LEU  CG
   A   2  LEU  CD1       110.70   124.93   -14.23  3.00e+00  2.25e+01   4.7*sigma
   A 136  HIS  ND1
   A 136  HIS  CG
   A 136  HIS  CD2       106.10   110.71    -4.61  1.00e+00  2.13e+01   4.6*sigma
   A 116  ASP  N
   A 116  ASP  CA
   A 116  ASP  C         111.00   123.68   -12.68  2.80e+00  2.05e+01   4.5*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.56    -4.46  1.00e+00  1.99e+01   4.5*sigma
   A  43  HIS  ND1
   A  43  HIS  CG
   A  43  HIS  CD2       106.10   110.54    -4.44  1.00e+00  1.97e+01   4.4*sigma
   A  47  ASP  CA
   A  47  ASP  CB
   A  47  ASP  CG        112.60   117.02    -4.42  1.00e+00  1.95e+01   4.4*sigma
   A 134  HIS  ND1
   A 134  HIS  CG
   A 134  HIS  CD2       106.10   110.47    -4.37  1.00e+00  1.91e+01   4.4*sigma
   A 116  ASP  O
   A 116  ASP  C
   A 117  PRO  N         123.00   116.03     6.97  1.60e+00  1.90e+01   4.4*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   110.44    -4.34  1.00e+00  1.88e+01   4.3*sigma
   A 113  LYS  CA
   A 113  LYS  C
   A 114  PRO  N         116.90   123.29    -6.39  1.50e+00  1.82e+01   4.3*sigma
   A 118  ASP  CA
   A 118  ASP  CB
   A 118  ASP  CG        112.60   116.84    -4.24  1.00e+00  1.80e+01   4.2*sigma
   A 101  LYS  O
   A 101  LYS  C
   A 102  PRO  N         123.00   116.29     6.71  1.60e+00  1.76e+01   4.2*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.18    -4.08  1.00e+00  1.67e+01   4.1*sigma
   A  95  ASP  C
   A  96  GLY  N
   A  96  GLY  CA        121.70   129.03    -7.33  1.80e+00  1.66e+01   4.1*sigma

  Min. delta:    0.001 (Z=  0.001)
  Max. delta:   14.233 (Z=  7.912)
  Mean delta:    2.498 (Z=  1.344)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  51  ILE  CA
   A  51  ILE  C
   A  52  PRO  N
   A  52  PRO  CA        180.00   149.97    30.03  5.00e+00  3.61e+01   6.0*sigma
   A  73  GLY  CA
   A  73  GLY  C
   A  74  ASP  N
   A  74  ASP  CA        180.00  -154.89   -25.11  5.00e+00  2.52e+01   5.0*sigma
   A 122  ILE  CA
   A 122  ILE  C
   A 123  GLU  N
   A 123  GLU  CA        180.00   158.40    21.60  5.00e+00  1.87e+01   4.3*sigma
   A 123  GLU  CA
   A 123  GLU  C
   A 124  ALA  N
   A 124  ALA  CA        180.00   159.24    20.76  5.00e+00  1.72e+01   4.2*sigma

  Min. delta:    0.014
  Max. delta:   56.249
  Mean delta:   10.551

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.584
  Mean delta:    0.128

                       ----------Planar groups----------                       

  atoms                 rms_deltas   delta_max    residual   deviation
   A 111  TYR  CB
   A 111  TYR  CG
   A 111  TYR  CD1
   A 111  TYR  CD2
   A 111  TYR  CE1
   A 111  TYR  CE2
   A 111  TYR  CZ
   A 111  TYR  OH            0.057       0.096       65.99   4.8*sigma

  Min. delta:    0.000
  Max. delta:    0.057
  Mean delta:    0.013

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

                       ----------Angle outliers----------                      

   A 119  LEU  HG , Angle CD1-CG-HG, observed: 120.698, delta from target: -12.698
   A  30  ILE  HB , Angle CA-CB-HB, observed: 95.944, delta from target: 13.056
   A 116  ASP  HA , Angle N-CA-HA, observed: 96.639, delta from target: 13.361
   A   2  LEU  HG , Angle CD2-CG-HG, observed: 122.743, delta from target: -14.743
   A   2  LEU  HG , Angle CB-CG-HG, observed: 93.486, delta from target: 15.514

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.012   0.064   2241  Z= 0.630
    Angle     :  2.225  15.514   4077  Z= 0.985
    Chirality :  0.128   0.584    176
    Planarity :  0.012   0.089    326
    Dihedral  :  9.670  59.990    768
    Min Nonbonded Distance : 1.606
  
  Molprobity Statistics.
    All-atom Clashscore : 8.57
    Ramachandran Plot:
      Outliers :  2.92 %
      Allowed  :  8.76 %
      Favored  : 88.32 %
    Rotamer:
      Outliers :  1.61 %
      Allowed  :  1.61 %
      Favored  : 96.77 %
    Cbeta Deviations :  2.27 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.00 %
      Twisted Proline : 14.29 %
      Twisted General : 0.00 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -1.96 (0.67), residues: 137
    helix:  0.16 (0.61), residues: 62
    sheet:  None (None), residues: 0
    loop : -2.73 (0.66), residues: 75
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.004   0.001   HIS A 138 
   PHE   0.112   0.029   PHE A  45 
   TYR   0.198   0.026   TYR A 111 
   ARG   0.034   0.010   ARG A  21 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.004   0.001   HIS A 138 
   PHE   0.065   0.025   PHE A  45 
   TYR   0.097   0.021   TYR A 111 
   ARG   0.015   0.004   ARG A  21 

                     ----------Asn/Gln/His flips----------                     

  No backwards Asn/Gln/His sidechains found.

=================================== Summary ===================================

  Ramachandran outliers =   2.92 %
                favored =  88.32 %
  Rotamer outliers      =   1.61 %
  C-beta deviations     =     3
  Clashscore            =   8.57
  RMS(bonds)            =   0.0119
  RMS(angles)           =   2.22
  MolProbity score      =   2.21

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py

End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000 (Z=  0.001)
  Max. delta:    0.052 (Z=  3.506)
  Mean delta:    0.016 (Z=  0.846)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  43  HIS  CB
   A  43  HIS  CG
   A  43  HIS  ND1       122.70   112.60    10.10  1.50e+00  4.53e+01   6.7*sigma
   A  51  ILE  CA
   A  51  ILE  C
   A  52  PRO  N         116.90   126.84    -9.94  1.50e+00  4.39e+01   6.6*sigma
   A  86  ILE  C
   A  86  ILE  CA
   A  86  ILE  CB        111.60   123.00   -11.40  2.00e+00  3.25e+01   5.7*sigma
   A 113  LYS  CA
   A 113  LYS  C
   A 114  PRO  N         116.90   124.64    -7.74  1.50e+00  2.67e+01   5.2*sigma
   A  86  ILE  N
   A  86  ILE  CA
   A  86  ILE  CB        111.50   103.22     8.28  1.70e+00  2.37e+01   4.9*sigma
   A  75  GLU  CA
   A  75  GLU  CB
   A  75  GLU  CG        114.10   123.30    -9.20  2.00e+00  2.12e+01   4.6*sigma
   A  57  VAL  CA
   A  57  VAL  CB
   A  57  VAL  CG2       110.40   102.78     7.62  1.70e+00  2.01e+01   4.5*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.55    -4.45  1.00e+00  1.98e+01   4.5*sigma
   A  46  SER  N
   A  46  SER  CA
   A  46  SER  CB        110.50   118.02    -7.52  1.70e+00  1.96e+01   4.4*sigma
   A  17  SER  C
   A  18  VAL  N
   A  18  VAL  CA        121.70   129.59    -7.89  1.80e+00  1.92e+01   4.4*sigma
   A  48  ALA  C
   A  48  ALA  CA
   A  48  ALA  CB        110.50   103.97     6.53  1.50e+00  1.90e+01   4.4*sigma
   A 101  LYS  CA
   A 101  LYS  C
   A 102  PRO  N         116.90   123.35    -6.45  1.50e+00  1.85e+01   4.3*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.39    -4.29  1.00e+00  1.84e+01   4.3*sigma
   A 118  ASP  N
   A 118  ASP  CA
   A 118  ASP  CB        110.50   117.66    -7.16  1.70e+00  1.77e+01   4.2*sigma
   A  43  HIS  CB
   A  43  HIS  CG
   A  43  HIS  CD2       131.20   136.66    -5.46  1.30e+00  1.76e+01   4.2*sigma
   A 134  HIS  ND1
   A 134  HIS  CG
   A 134  HIS  CD2       106.10   110.29    -4.19  1.00e+00  1.75e+01   4.2*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   110.27    -4.17  1.00e+00  1.74e+01   4.2*sigma
   A 136  HIS  ND1
   A 136  HIS  CG
   A 136  HIS  CD2       106.10   110.27    -4.17  1.00e+00  1.74e+01   4.2*sigma
   A 116  ASP  CA
   A 116  ASP  C
   A 117  PRO  N         116.90   123.15    -6.25  1.50e+00  1.73e+01   4.2*sigma
   A  43  HIS  ND1
   A  43  HIS  CG
   A  43  HIS  CD2       106.10   110.26    -4.16  1.00e+00  1.73e+01   4.2*sigma
   A 138  HIS  ND1
   A 138  HIS  CG
   A 138  HIS  CD2       106.10   110.24    -4.14  1.00e+00  1.72e+01   4.1*sigma
   A  90  SER  C
   A  91  TYR  N
   A  91  TYR  CA        121.70   129.03    -7.33  1.80e+00  1.66e+01   4.1*sigma
   A  75  GLU  N
   A  75  GLU  CA
   A  75  GLU  CB        110.50   103.60     6.90  1.70e+00  1.65e+01   4.1*sigma

  Min. delta:    0.002 (Z=  0.001)
  Max. delta:   11.396 (Z=  6.734)
  Mean delta:    2.327 (Z=  1.298)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A   2  LEU  CA
   A   2  LEU  C
   A   3  LEU  N
   A   3  LEU  CA        180.00   159.57    20.43  5.00e+00  1.67e+01   4.1*sigma

  Min. delta:    0.000
  Max. delta:   87.064
  Mean delta:   11.691

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.566
  Mean delta:    0.112

                       ----------Planar groups----------                       

  atoms                 rms_deltas   delta_max    residual   deviation
   A 111  TYR  CB
   A 111  TYR  CG
   A 111  TYR  CD1
   A 111  TYR  CD2
   A 111  TYR  CE1
   A 111  TYR  CE2
   A 111  TYR  CZ
   A 111  TYR  OH            0.076       0.103      115.24   5.2*sigma
   A 105  TYR  CB
   A 105  TYR  CG
   A 105  TYR  CD1
   A 105  TYR  CD2
   A 105  TYR  CE1
   A 105  TYR  CE2
   A 105  TYR  CZ
   A 105  TYR  OH            0.044       0.083       38.57   4.2*sigma

  Min. delta:    0.000
  Max. delta:    0.093
  Mean delta:    0.016

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

                       ----------Angle outliers----------                      

   A  86  ILE  HA , Angle N-CA-HA, observed: 123.148, delta from target: -13.148

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.011   0.052   2241  Z= 0.602
    Angle     :  2.073  13.148   4077  Z= 0.941
    Chirality :  0.112   0.566    176
    Planarity :  0.014   0.101    326
    Dihedral  : 10.410  87.064    768
    Min Nonbonded Distance : 1.716
  
  Molprobity Statistics.
    All-atom Clashscore : 5.86
    Ramachandran Plot:
      Outliers :  0.73 %
      Allowed  : 13.14 %
      Favored  : 86.13 %
    Rotamer:
      Outliers :  0.81 %
      Allowed  :  1.61 %
      Favored  : 97.58 %
    Cbeta Deviations :  3.03 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.00 %
      Twisted Proline : 0.00 %
      Twisted General : 0.00 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -1.88 (0.71), residues: 137
    helix:  0.96 (0.59), residues: 62
    sheet: -1.00 (2.02), residues: 10
    loop : -3.75 (0.71), residues: 65
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.005   0.001   HIS A 139 
   PHE   0.177   0.029   PHE A  15 
   TYR   0.192   0.034   TYR A 111 
   ARG   0.072   0.010   ARG A  58 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.005   0.001   HIS A 139 
   PHE   0.067   0.013   PHE A  15 
   TYR   0.115   0.029   TYR A 111 
   ARG   0.006   0.001   ARG A  21 

                     ----------Asn/Gln/His flips----------                     

  No backwards Asn/Gln/His sidechains found.

=================================== Summary ===================================

  Ramachandran outliers =   0.73 %
                favored =  86.13 %
  Rotamer outliers      =   0.81 %
  C-beta deviations     =     4
  Clashscore            =   5.86
  RMS(bonds)            =   0.0114
  RMS(angles)           =   2.07
  MolProbity score      =   1.96

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py

End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000 (Z=  0.000)
  Max. delta:    0.044 (Z=  3.630)
  Mean delta:    0.015 (Z=  0.807)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 135  HIS  C
   A 136  HIS  N
   A 136  HIS  CA        121.70   135.92   -14.22  1.80e+00  6.24e+01   7.9*sigma
   A  29  ASP  CA
   A  29  ASP  CB
   A  29  ASP  CG        112.60   118.77    -6.17  1.00e+00  3.80e+01   6.2*sigma
   A 137  HIS  CA
   A 137  HIS  CB
   A 137  HIS  CG        113.80   119.27    -5.47  1.00e+00  3.00e+01   5.5*sigma
   A 138  HIS  C
   A 139  HIS  N
   A 139  HIS  CA        121.70   130.77    -9.07  1.80e+00  2.54e+01   5.0*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.81    -4.71  1.00e+00  2.22e+01   4.7*sigma
   A 135  HIS  O
   A 135  HIS  C
   A 136  HIS  N         123.00   115.60     7.40  1.60e+00  2.14e+01   4.6*sigma
   A 138  HIS  ND1
   A 138  HIS  CG
   A 138  HIS  CD2       106.10   110.72    -4.62  1.00e+00  2.13e+01   4.6*sigma
   A 116  ASP  CA
   A 116  ASP  C
   A 117  PRO  N         116.90   123.40    -6.50  1.50e+00  1.88e+01   4.3*sigma
   A 103  ASP  CA
   A 103  ASP  CB
   A 103  ASP  CG        112.60   116.85    -4.25  1.00e+00  1.81e+01   4.3*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.30    -4.20  1.00e+00  1.77e+01   4.2*sigma
   A 139  HIS  CA
   A 139  HIS  CB
   A 139  HIS  CG        113.80   117.94    -4.14  1.00e+00  1.72e+01   4.1*sigma
   A  43  HIS  ND1
   A  43  HIS  CG
   A  43  HIS  CD2       106.10   110.15    -4.05  1.00e+00  1.64e+01   4.0*sigma
   A  53  LEU  CA
   A  53  LEU  C
   A  54  PRO  N         116.90   122.92    -6.02  1.50e+00  1.61e+01   4.0*sigma

  Min. delta:    0.001 (Z=  0.000)
  Max. delta:   14.221 (Z=  7.901)
  Mean delta:    2.186 (Z=  1.217)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 136  HIS  CA
   A 136  HIS  C
   A 137  HIS  N
   A 137  HIS  CA        180.00    84.93    95.07  5.00e+00  3.62e+02  19.0*sigma
   A 118  ASP  CA
   A 118  ASP  C
   A 119  LEU  N
   A 119  LEU  CA        180.00   145.11    34.89  5.00e+00  4.87e+01   7.0*sigma
   A  75  GLU  CA
   A  75  GLU  C
   A  76  SER  N
   A  76  SER  CA        180.00   150.63    29.37  5.00e+00  3.45e+01   5.9*sigma
   A 137  HIS  CA
   A 137  HIS  C
   A 138  HIS  N
   A 138  HIS  CA        180.00   150.89    29.11  5.00e+00  3.39e+01   5.8*sigma
   A 116  ASP  CA
   A 116  ASP  C
   A 117  PRO  N
   A 117  PRO  CA        180.00   152.11    27.89  5.00e+00  3.11e+01   5.6*sigma
   A 133  GLU  CA
   A 133  GLU  C
   A 134  HIS  N
   A 134  HIS  CA        180.00   153.61    26.39  5.00e+00  2.79e+01   5.3*sigma
   A 134  HIS  CA
   A 134  HIS  C
   A 135  HIS  N
   A 135  HIS  CA        180.00   155.68    24.32  5.00e+00  2.36e+01   4.9*sigma
   A 114  PRO  CA
   A 114  PRO  C
   A 115  ALA  N
   A 115  ALA  CA        180.00   157.21    22.79  5.00e+00  2.08e+01   4.6*sigma
   A 113  LYS  CA
   A 113  LYS  C
   A 114  PRO  N
   A 114  PRO  CA        180.00   158.01    21.99  5.00e+00  1.93e+01   4.4*sigma

  Min. delta:    0.051
  Max. delta:   95.067
  Mean delta:   12.203

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.001
  Max. delta:    0.316
  Mean delta:    0.093

                       ----------Planar groups----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.099
  Mean delta:    0.014

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.011   0.044   2241  Z= 0.574
    Angle     :  1.934  14.221   4077  Z= 0.880
    Chirality :  0.093   0.316    176
    Planarity :  0.011   0.099    326
    Dihedral  : 10.730  95.067    768
    Min Nonbonded Distance : 1.636
  
  Molprobity Statistics.
    All-atom Clashscore : 1.80
    Ramachandran Plot:
      Outliers :  6.57 %
      Allowed  : 11.68 %
      Favored  : 81.75 %
    Rotamer:
      Outliers :  0.00 %
      Allowed  :  0.81 %
      Favored  : 99.19 %
    Cbeta Deviations :  0.00 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.76 %
      Twisted Proline : 0.00 %
      Twisted General : 1.53 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -0.28 (0.73), residues: 137
    helix:  2.51 (0.59), residues: 64
    sheet:  None (None), residues: 0
    loop : -2.96 (0.68), residues: 73
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.004   0.001   HIS A 139 
   PHE   0.115   0.019   PHE A  45 
   TYR   0.063   0.013   TYR A  68 
   ARG   0.041   0.006   ARG A  58 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.004   0.001   HIS A 139 
   PHE   0.063   0.017   PHE A  45 
   TYR   0.046   0.012   TYR A  68 
   ARG   0.006   0.001   ARG A  58 

                     ----------Asn/Gln/His flips----------                     

   A 137  HIS

=================================== Summary ===================================


End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000 (Z=  0.000)
  Max. delta:    0.062 (Z=  3.577)
  Mean delta:    0.016 (Z=  0.889)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 136  HIS  C
   A 137  HIS  N
   A 137  HIS  CA        121.70   135.74   -14.04  1.80e+00  6.08e+01   7.8*sigma
   A 131  ILE  C
   A 132  LEU  N
   A 132  LEU  CA        121.70   135.55   -13.85  1.80e+00  5.92e+01   7.7*sigma
   A 116  ASP  CA
   A 116  ASP  C
   A 117  PRO  N         116.90   127.78   -10.88  1.50e+00  5.26e+01   7.3*sigma
   A 129  ARG  C
   A 130  SER  N
   A 130  SER  CA        121.70   134.67   -12.97  1.80e+00  5.19e+01   7.2*sigma
   A 127  ARG  C
   A 128  MET  N
   A 128  MET  CA        121.70   134.29   -12.59  1.80e+00  4.89e+01   7.0*sigma
   A 137  HIS  CA
   A 137  HIS  CB
   A 137  HIS  CG        113.80   119.92    -6.12  1.00e+00  3.75e+01   6.1*sigma
   A 116  ASP  O
   A 116  ASP  C
   A 117  PRO  N         123.00   113.46     9.54  1.60e+00  3.55e+01   6.0*sigma
   A 130  SER  N
   A 130  SER  CA
   A 130  SER  CB        110.50   120.20    -9.70  1.70e+00  3.26e+01   5.7*sigma
   A 113  LYS  CA
   A 113  LYS  C
   A 114  PRO  N         116.90   124.90    -8.00  1.50e+00  2.84e+01   5.3*sigma
   A  30  ILE  CA
   A  30  ILE  CB
   A  30  ILE  CG1       110.40   118.91    -8.51  1.70e+00  2.51e+01   5.0*sigma
   A 127  ARG  O
   A 127  ARG  C
   A 128  MET  N         123.00   115.09     7.91  1.60e+00  2.44e+01   4.9*sigma
   A 135  HIS  N
   A 135  HIS  CA
   A 135  HIS  CB        110.50   118.73    -8.23  1.70e+00  2.35e+01   4.8*sigma
   A 127  ARG  CA
   A 127  ARG  C
   A 128  MET  N         116.20   125.63    -9.43  2.00e+00  2.22e+01   4.7*sigma
   A 131  ILE  O
   A 131  ILE  C
   A 132  LEU  N         123.00   115.50     7.50  1.60e+00  2.20e+01   4.7*sigma
   A 137  HIS  N
   A 137  HIS  CA
   A 137  HIS  CB        110.50   118.42    -7.92  1.70e+00  2.17e+01   4.7*sigma
   A  29  ASP  CA
   A  29  ASP  CB
   A  29  ASP  CG        112.60   117.21    -4.61  1.00e+00  2.13e+01   4.6*sigma
   A 128  MET  CA
   A 128  MET  CB
   A 128  MET  CG        114.10   123.30    -9.20  2.00e+00  2.12e+01   4.6*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.57    -4.47  1.00e+00  2.00e+01   4.5*sigma
   A  43  HIS  ND1
   A  43  HIS  CG
   A  43  HIS  CD2       106.10   110.53    -4.43  1.00e+00  1.96e+01   4.4*sigma
   A  21  ARG  CA
   A  21  ARG  C
   A  22  PRO  N         116.90   123.46    -6.56  1.50e+00  1.91e+01   4.4*sigma
   A 131  ILE  CA
   A 131  ILE  CB
   A 131  ILE  CG2       110.50   117.74    -7.24  1.70e+00  1.81e+01   4.3*sigma
   A   2  LEU  CD1
   A   2  LEU  CG
   A   2  LEU  CD2       110.80   101.62     9.18  2.20e+00  1.74e+01   4.2*sigma
   A  43  HIS  C
   A  43  HIS  CA
   A  43  HIS  CB        110.10   102.19     7.91  1.90e+00  1.73e+01   4.2*sigma
   A   2  LEU  CB
   A   2  LEU  CG
   A   2  LEU  CD1       110.70   122.93   -12.23  3.00e+00  1.66e+01   4.1*sigma
   A 138  HIS  ND1
   A 138  HIS  CG
   A 138  HIS  CD2       106.10   110.14    -4.04  1.00e+00  1.63e+01   4.0*sigma
   A  47  ASP  CA
   A  47  ASP  CB
   A  47  ASP  CG        112.60   108.56     4.04  1.00e+00  1.63e+01   4.0*sigma
   A  97  SER  N
   A  97  SER  CA
   A  97  SER  CB        110.50   117.35    -6.85  1.70e+00  1.63e+01   4.0*sigma

  Min. delta:    0.001 (Z=  0.000)
  Max. delta:   14.036 (Z=  7.798)
  Mean delta:    2.539 (Z=  1.404)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 134  HIS  CA
   A 134  HIS  C
   A 135  HIS  N
   A 135  HIS  CA        180.00   102.94    77.06  5.00e+00  2.38e+02  15.4*sigma
   A 133  GLU  CA
   A 133  GLU  C
   A 134  HIS  N
   A 134  HIS  CA        180.00   116.40    63.60  5.00e+00  1.62e+02  12.7*sigma
   A  94  GLY  CA
   A  94  GLY  C
   A  95  ASP  N
   A  95  ASP  CA        180.00   127.13    52.87  5.00e+00  1.12e+02  10.6*sigma
   A  95  ASP  CA
   A  95  ASP  C
   A  96  GLY  N
   A  96  GLY  CA        180.00   134.59    45.41  5.00e+00  8.25e+01   9.1*sigma
   A 123  GLU  CA
   A 123  GLU  C
   A 124  ALA  N
   A 124  ALA  CA        180.00   136.94    43.06  5.00e+00  7.42e+01   8.6*sigma
   A 122  ILE  CA
   A 122  ILE  C
   A 123  GLU  N
   A 123  GLU  CA        180.00   137.46    42.54  5.00e+00  7.24e+01   8.5*sigma
   A 119  LEU  CA
   A 119  LEU  C
   A 120  GLU  N
   A 120  GLU  CA        180.00   141.13    38.87  5.00e+00  6.04e+01   7.8*sigma
   A 132  LEU  CA
   A 132  LEU  C
   A 133  GLU  N
   A 133  GLU  CA        180.00   142.68    37.32  5.00e+00  5.57e+01   7.5*sigma
   A 127  ARG  CA
   A 127  ARG  C
   A 128  MET  N
   A 128  MET  CA          0.00    34.39   -34.39  5.00e+00  4.73e+01   6.9*sigma
   A 137  HIS  CA
   A 137  HIS  C
   A 138  HIS  N
   A 138  HIS  CA        180.00   147.01    32.99  5.00e+00  4.35e+01   6.6*sigma
   A 118  ASP  CA
   A 118  ASP  C
   A 119  LEU  N
   A 119  LEU  CA        180.00   149.53    30.47  5.00e+00  3.71e+01   6.1*sigma
   A 135  HIS  CA
   A 135  HIS  C
   A 136  HIS  N
   A 136  HIS  CA        180.00   154.49    25.51  5.00e+00  2.60e+01   5.1*sigma
   A 138  HIS  CA
   A 138  HIS  C
   A 139  HIS  N
   A 139  HIS  CA        180.00   157.83    22.17  5.00e+00  1.97e+01   4.4*sigma
   A 130  SER  CA
   A 130  SER  C
   A 131  ILE  N
   A 131  ILE  CA        180.00   158.04    21.96  5.00e+00  1.93e+01   4.4*sigma
   A  96  GLY  CA
   A  96  GLY  C
   A  97  SER  N
   A  97  SER  CA        180.00   158.56    21.44  5.00e+00  1.84e+01   4.3*sigma
   A  93  LEU  CA
   A  93  LEU  C
   A  94  GLY  N
   A  94  GLY  CA        180.00   158.82    21.18  5.00e+00  1.79e+01   4.2*sigma

  Min. delta:    0.002
  Max. delta:   77.057
  Mean delta:   13.046

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.603
  Mean delta:    0.145

                       ----------Planar groups----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.075
  Mean delta:    0.015

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

                       ----------Angle outliers----------                      

   A   2  LEU  HG , Angle CB-CG-HG, observed: 95.942, delta from target: 13.058
   A 138  HIS  HA , Angle N-CA-HA, observed: 96.933, delta from target: 13.067

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.012   0.062   2241  Z= 0.633
    Angle     :  2.239  14.036   4077  Z= 1.015
    Chirality :  0.145   0.603    176
    Planarity :  0.011   0.075    326
    Dihedral  : 11.679  77.057    768
    Min Nonbonded Distance : 1.688
  
  Molprobity Statistics.
    All-atom Clashscore : 5.86
    Ramachandran Plot:
      Outliers : 11.68 %
      Allowed  : 10.22 %
      Favored  : 78.10 %
    Rotamer:
      Outliers :  0.00 %
      Allowed  :  0.81 %
      Favored  : 99.19 %
    Cbeta Deviations :  5.30 %
    Peptide Plane:
      Cis-proline     : 14.29 %
      Cis-general     : 2.29 %
      Twisted Proline : 0.00 %
      Twisted General : 8.40 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -1.41 (0.72), residues: 137
    helix:  0.78 (0.56), residues: 87
    sheet:  None (None), residues: 0
    loop : -4.31 (0.72), residues: 50
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.005   0.002   HIS A 134 
   PHE   0.078   0.018   PHE A  15 
   TYR   0.086   0.017   TYR A 111 
   ARG   0.043   0.009   ARG A  58 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.005   0.002   HIS A 134 
   PHE   0.032   0.011   PHE A  15 
   TYR   0.066   0.014   TYR A 111 
   ARG   0.012   0.003   ARG A  21 

                     ----------Asn/Gln/His flips----------                     

   A 138  HIS
   A 134  HIS

=================================== Summary ===================================

  Ramachandran outliers =   6.57 %
                favored =  81.75 %
  Rotamer outliers      =   0.00 %
  C-beta deviations     =     0
  Clashscore            =   1.80
  RMS(bonds)            =   0.0110
  RMS(angles)           =   1.93
  MolProbity score      =   1.65

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py
  Ramachandran outliers =  11.68 %
                favored =  78.10 %
  Rotamer outliers      =   0.00 %
  C-beta deviations     =     7
  Clashscore            =   5.86
  RMS(bonds)            =   0.0117
  RMS(angles)           =   2.24
  MolProbity score      =   2.08

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py

End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  atoms                 ideal   model   delta   sigma   slack  residual   deviation
   A  98  SER  C
   A  99  LEU  N           1.33     1.40    -0.07  1.40e-02  2.27e+01   4.8*sigma

  Min. delta:    0.000 (Z=  0.000)
  Max. delta:    0.071 (Z=  4.769)
  Mean delta:    0.018 (Z=  0.937)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A  29  ASP  CA
   A  29  ASP  CB
   A  29  ASP  CG        112.60   119.43    -6.83  1.00e+00  4.67e+01   6.8*sigma
   A 101  LYS  CA
   A 101  LYS  C
   A 102  PRO  N         116.90   123.90    -7.00  1.50e+00  2.18e+01   4.7*sigma
   A 126  VAL  C
   A 127  ARG  N
   A 127  ARG  CA        121.70   129.84    -8.14  1.80e+00  2.04e+01   4.5*sigma
   A  44  ASP  C
   A  44  ASP  CA
   A  44  ASP  CB        110.10   118.64    -8.54  1.90e+00  2.02e+01   4.5*sigma
   A  43  HIS  ND1
   A  43  HIS  CG
   A  43  HIS  CD2       106.10   110.57    -4.47  1.00e+00  2.00e+01   4.5*sigma
   A  43  HIS  C
   A  43  HIS  CA
   A  43  HIS  CB        110.10   101.62     8.48  1.90e+00  1.99e+01   4.5*sigma
   A 114  PRO  N
   A 114  PRO  CA
   A 114  PRO  C         112.10   123.23   -11.13  2.50e+00  1.98e+01   4.5*sigma
   A  51  ILE  CA
   A  51  ILE  C
   A  52  PRO  N         116.90   123.56    -6.66  1.50e+00  1.97e+01   4.4*sigma
   A  80  GLY  C
   A  81  TYR  N
   A  81  TYR  CA        121.70   129.66    -7.96  1.80e+00  1.96e+01   4.4*sigma
   A   5  THR  CA
   A   5  THR  C
   A   6  PRO  N         116.90   123.50    -6.60  1.50e+00  1.94e+01   4.4*sigma
   A 136  HIS  CB
   A 136  HIS  CG
   A 136  HIS  ND1       122.70   116.21     6.49  1.50e+00  1.87e+01   4.3*sigma
   A  76  SER  C
   A  77  ILE  N
   A  77  ILE  CA        121.70   129.45    -7.75  1.80e+00  1.85e+01   4.3*sigma
   A 134  HIS  ND1
   A 134  HIS  CG
   A 134  HIS  CD2       106.10   110.39    -4.29  1.00e+00  1.84e+01   4.3*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.33    -4.23  1.00e+00  1.79e+01   4.2*sigma
   A  53  LEU  CA
   A  53  LEU  C
   A  54  PRO  N         116.90   123.14    -6.24  1.50e+00  1.73e+01   4.2*sigma
   A 138  HIS  ND1
   A 138  HIS  CG
   A 138  HIS  CD2       106.10   110.22    -4.12  1.00e+00  1.70e+01   4.1*sigma
   A  46  SER  CA
   A  46  SER  CB
   A  46  SER  OG        111.10   119.33    -8.23  2.00e+00  1.69e+01   4.1*sigma
   A  21  ARG  CA
   A  21  ARG  C
   A  22  PRO  N         116.90   123.06    -6.16  1.50e+00  1.69e+01   4.1*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.18    -4.08  1.00e+00  1.67e+01   4.1*sigma
   A 136  HIS  ND1
   A 136  HIS  CG
   A 136  HIS  CD2       106.10   110.14    -4.04  1.00e+00  1.63e+01   4.0*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   110.11    -4.01  1.00e+00  1.61e+01   4.0*sigma

  Min. delta:    0.000 (Z=  0.000)
  Max. delta:   11.130 (Z=  6.833)
  Mean delta:    2.314 (Z=  1.266)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 113  LYS  CA
   A 113  LYS  C
   A 114  PRO  N
   A 114  PRO  CA        180.00  -147.41   -32.59  5.00e+00  4.25e+01   6.5*sigma
   A  98  SER  CA
   A  98  SER  C
   A  99  LEU  N
   A  99  LEU  CA        180.00  -153.24   -26.76  5.00e+00  2.86e+01   5.4*sigma
   A 138  HIS  CA
   A 138  HIS  C
   A 139  HIS  N
   A 139  HIS  CA        180.00   157.63    22.37  5.00e+00  2.00e+01   4.5*sigma
   A  80  GLY  CA
   A  80  GLY  C
   A  81  TYR  N
   A  81  TYR  CA        180.00   159.09    20.91  5.00e+00  1.75e+01   4.2*sigma
   A 122  ILE  CA
   A 122  ILE  C
   A 123  GLU  N
   A 123  GLU  CA        180.00   159.67    20.33  5.00e+00  1.65e+01   4.1*sigma

  Min. delta:    0.004
  Max. delta:   59.044
  Mean delta:   10.860

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.002
  Max. delta:    0.455
  Mean delta:    0.111

                       ----------Planar groups----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.069
  Mean delta:    0.013

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

                       ----------Angle outliers----------                      

   A 114  PRO  HA , Angle C-CA-HA, observed: 96.714, delta from target: 12.286

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.013   0.071   2241  Z= 0.667
    Angle     :  2.043  12.286   4077  Z= 0.919
    Chirality :  0.111   0.455    176
    Planarity :  0.011   0.069    326
    Dihedral  :  9.908  59.044    768
    Min Nonbonded Distance : 1.736
  
  Molprobity Statistics.
    All-atom Clashscore : 4.06
    Ramachandran Plot:
      Outliers :  6.57 %
      Allowed  :  9.49 %
      Favored  : 83.94 %
    Rotamer:
      Outliers :  1.61 %
      Allowed  :  0.81 %
      Favored  : 97.58 %
    Cbeta Deviations :  0.76 %
    Peptide Plane:
      Cis-proline     : 14.29 %
      Cis-general     : 0.00 %
      Twisted Proline : 14.29 %
      Twisted General : 0.00 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -0.97 (0.69), residues: 137
    helix:  1.58 (0.56), residues: 69
    sheet:  None (None), residues: 0
    loop : -3.28 (0.67), residues: 68
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.005   0.001   HIS A 139 
   PHE   0.116   0.039   PHE A  45 
   TYR   0.086   0.015   TYR A 105 
   ARG   0.025   0.005   ARG A  58 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.005   0.001   HIS A 139 
   PHE   0.057   0.029   PHE A  67 
   TYR   0.041   0.013   TYR A 105 
   ARG   0.006   0.001   ARG A  21 

                     ----------Asn/Gln/His flips----------                     

  No backwards Asn/Gln/His sidechains found.

=================================== Summary ===================================

  Ramachandran outliers =   6.57 %
                favored =  83.94 %
  Rotamer outliers      =   1.61 %
  C-beta deviations     =     1
  Clashscore            =   4.06
  RMS(bonds)            =   0.0128
  RMS(angles)           =   2.04
  MolProbity score      =   2.03

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py

End of input processing

=============================== Model properties ==============================

   Number of:
     all atoms      : 2217
     H or D atoms   : 1106
     chains         : 1
     a.a. residues  : 139
     nucleotides    : 0
     water          : 0
     other (ligands): 0
   Ligands: None

============================= Geometry restraints =============================


                        ----------Bond lengths----------                       

  atoms                 ideal   model   delta   sigma   slack  residual   deviation
   A 117  PRO  C
   A 118  ASP  N           1.33     1.39    -0.06  1.40e-02  1.83e+01   4.3*sigma

  Min. delta:    0.000 (Z=  0.002)
  Max. delta:    0.060 (Z=  4.275)
  Mean delta:    0.015 (Z=  0.783)

                        ----------Bond angles----------                        

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 103  ASP  CA
   A 103  ASP  CB
   A 103  ASP  CG        112.60   118.27    -5.67  1.00e+00  3.22e+01   5.7*sigma
   A  51  ILE  CA
   A  51  ILE  C
   A  52  PRO  N         116.90   124.91    -8.01  1.50e+00  2.85e+01   5.3*sigma
   A  23  ASP  CA
   A  23  ASP  CB
   A  23  ASP  CG        112.60   107.51     5.09  1.00e+00  2.59e+01   5.1*sigma
   A 103  ASP  C
   A 103  ASP  CA
   A 103  ASP  CB        110.10   101.31     8.79  1.90e+00  2.14e+01   4.6*sigma
   A 135  HIS  ND1
   A 135  HIS  CG
   A 135  HIS  CD2       106.10   110.63    -4.53  1.00e+00  2.05e+01   4.5*sigma
   A 117  PRO  N
   A 117  PRO  CA
   A 117  PRO  C         112.10   123.26   -11.16  2.50e+00  1.99e+01   4.5*sigma
   A  43  HIS  ND1
   A  43  HIS  CG
   A  43  HIS  CD2       106.10   110.43    -4.33  1.00e+00  1.87e+01   4.3*sigma
   A 134  HIS  ND1
   A 134  HIS  CG
   A 134  HIS  CD2       106.10   110.35    -4.25  1.00e+00  1.81e+01   4.3*sigma
   A 138  HIS  ND1
   A 138  HIS  CG
   A 138  HIS  CD2       106.10   110.22    -4.12  1.00e+00  1.70e+01   4.1*sigma
   A 139  HIS  ND1
   A 139  HIS  CG
   A 139  HIS  CD2       106.10   110.20    -4.10  1.00e+00  1.68e+01   4.1*sigma
   A 137  HIS  ND1
   A 137  HIS  CG
   A 137  HIS  CD2       106.10   110.18    -4.08  1.00e+00  1.67e+01   4.1*sigma

  Min. delta:    0.001 (Z=  0.000)
  Max. delta:   11.162 (Z=  5.672)
  Mean delta:    2.035 (Z=  1.147)

                      ----------Dihedral angles----------                      

  atoms                   ideal    model    delta   sigma  residual   deviation
   A 116  ASP  CA
   A 116  ASP  C
   A 117  PRO  N
   A 117  PRO  CA        180.00  -147.60   -32.40  5.00e+00  4.20e+01   6.5*sigma
   A 117  PRO  CA
   A 117  PRO  C
   A 118  ASP  N
   A 118  ASP  CA        180.00   158.33    21.67  5.00e+00  1.88e+01   4.3*sigma

  Min. delta:    0.006
  Max. delta:   84.859
  Mean delta:   10.710

                       ----------Chiral volumes----------                      

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.001
  Max. delta:    0.317
  Mean delta:    0.089

                       ----------Planar groups----------                       

  All restrained atoms within 4.0 sigma of ideal values.

  Min. delta:    0.000
  Max. delta:    0.093
  Mean delta:    0.013

============================= Hydrogen validation =============================


                ----------H/D atoms in the input model----------               

  Total number of hydrogen atoms : 1106
  Total number of deuterium atoms: 0
  Number of H atoms (protein)    : 1106
  Number of D atoms (protein)    : 0
  Number of H atoms (water)      : 0
  Number of D atoms (water)      : 0
  Number of H atoms (other)      : 0
  Number of D atoms (other)      : 0

                      ----------Water molecules----------                      

  Number of water                            : 0
  Number of water with 0 H (or D)            : 0
  Number of water with 1 H (or D)            : 0
  Number of water with 2 H (or D)            : 0
  Number of water in alternative conformation: 0
  Number of water without oxygen atom        : 0

                    ----------MISSING H or D atoms----------                   

    1" pdbres="HIS A  43  conformer  : HE2, HD1 
    1" pdbres="HIS A 134  conformer  : HE2, HD1 
    1" pdbres="HIS A 135  conformer  : HE2, HD1 
    1" pdbres="HIS A 136  conformer  : HE2, HD1 
    1" pdbres="HIS A 137  conformer  : HE2, HD1 
    1" pdbres="HIS A 138  conformer  : HE2, HD1 
    1" pdbres="HIS A 139  conformer  : HE2, HD1 

                       ----------Angle outliers----------                      

   A 117  PRO  HA , Angle CB-CA-HA, observed: 121.414, delta from target: -12.414

============================ Molprobity validation ============================


  Geometry Restraints Library: GeoStd + Monomer Library
  Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
    Bond      :  0.011   0.060   2241  Z= 0.557
    Angle     :  1.856  12.414   4077  Z= 0.840
    Chirality :  0.089   0.317    176
    Planarity :  0.011   0.093    326
    Dihedral  :  9.520  84.859    768
    Min Nonbonded Distance : 1.697
  
  Molprobity Statistics.
    All-atom Clashscore : 0.90
    Ramachandran Plot:
      Outliers :  3.65 %
      Allowed  :  8.76 %
      Favored  : 87.59 %
    Rotamer:
      Outliers :  1.61 %
      Allowed  :  0.00 %
      Favored  : 98.39 %
    Cbeta Deviations :  0.76 %
    Peptide Plane:
      Cis-proline     : 0.00 %
      Cis-general     : 0.00 %
      Twisted Proline : 14.29 %
      Twisted General : 0.00 %
  
  Rama-Z (Ramachandran plot Z-score):
  Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
  Scores for whole/helix/sheet/loop are scaled independently;
  therefore, the values are not related in a simple manner.
    whole: -1.62 (0.67), residues: 137
    helix:  0.79 (0.63), residues: 64
    sheet:  None (None), residues: 0
    loop : -3.01 (0.62), residues: 73
  
  Max deviation from planes:
     Type  MaxDev  MeanDev LineInFile
   HIS   0.004   0.001   HIS A  43 
   PHE   0.143   0.031   PHE A  15 
   TYR   0.122   0.027   TYR A 111 
   ARG   0.016   0.004   ARG A 127 

  Max deviation from planes (no H):
     Type  MaxDev  MeanDev LineInFile
   HIS   0.004   0.001   HIS A  43 
   PHE   0.059   0.021   PHE A  15 
   TYR   0.104   0.025   TYR A 111 
   ARG   0.006   0.001   ARG A  58 

                     ----------Asn/Gln/His flips----------                     

   A  66  GLN
   A 100  GLN

=================================== Summary ===================================

  Ramachandran outliers =   3.65 %
                favored =  87.59 %
  Rotamer outliers      =   1.61 %
  C-beta deviations     =     1
  Clashscore            =   0.90
  RMS(bonds)            =   0.0107
  RMS(angles)           =   1.86
  MolProbity score      =   1.54

Results written to molprobity.out
Wrote script for Coot: molprobity_coot.py
