Sequence templates
## No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
## 1 3LD1_A Replicase polyprotein 1 98.7 1.2E-09 2.4E-14 113.8 -2.3 210 17-283 72-315 (359)
##
## No 1
## >3LD1_A Replicase polyprotein 1a (E.C.3.4.22.-); Globular like, Host cytoplasm, Host; 2.498A {Avian infectious bronchitis virus (strain M41)}
## Probab=98.71 E-value=1.2e-09 Score=113.83 Aligned_cols=210 Identities=10% Similarity=0.066 Sum_probs=0.0 Template_Neff=3.800
##
## Q ss_pred ehHHHHHHHHHcCCcc----cch----------hccccccee--ceeEEEcC--CcEEEEEEEEEEccCCCceeccEEEe
## Q YP_009725298.1 17 PLECIKDLLARAGKAS----CTL----------SEQLDFIDT--KRGVYCCR--EHEHEIAWYTERSEKSYELQTPFEIK 78 (638)
## Q Consensus 17 ~vg~~~~~~~~~G~~~----k~~----------~~~~~~~~~--~~~~~~~~--~k~y~~~~~~~r~~v~~~~~si~~V~ 78 (638)
## ++.++..++...-.++ +++ ...|..... ++-+.... .+.|.++||+.|+.+.|. ++++|.
## T Consensus 72 ~a~~l~aya~la~~E~i~~~~~l~~~~~~~~~~~~~ws~~~~~l~~~a~~~~~~~~~~~i~Wh~vr~~~~v~--s~atir 149 (359)
## T 3LD1_A 72 PAKVLKATSKLADLEDIFGVSPFARKYRELLKTACQWSLTVETLDARALTLDEIFDPTEILWLQVAAKIQVS--AMAMRR 149 (359)
## T ss_dssp CCEEECTTCCHHHHHHHHCCCHHHHHHHHHHHTHHHHTSSHHHHHHHHHHGGGTCCHHHHHHHTTCSSHHHH--HHHHHH
## T ss_pred chHHHHHHHHHHhhcccccCchHHHHHHHHHHhHhhheecHhhHHHHhhccccccChhheeeeehhhccchh--hheehh
##
##
## Q ss_pred eeeecC-ceeccCCCCcccccCcceEecC------cceeecCCC-cceeeEEeeeecCCCccCceeEEEEEeecCCCccc
## Q YP_009725298.1 79 LAKKFD-TFNGECPNFVFPLNSIIKTIQP------RVEKKKLDG-FMGRIRSVYPVASPNECNQMCLSTLMKCDHCGETS 150 (638)
## Q Consensus 79 ~v~~~d-~~v~~~~~~~~~~~~~~~~~~~------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~vdc~~c~~~~ 150 (638)
## ++.++. ......+-. .++.+.++.| ++....+.+ ........|+..+..+++++|++|+++|+
## T Consensus 150 sv~~V~~~~~ddl~~~---lng~V~Vv~P~iVl~Lprlvdif~~~~~l~v~s~yyk~a~~DCg~V~~~ayvdC~------ 220 (359)
## T 3LD1_A 150 LVGEVTAKVMDALGSN---MSALFQIFKQQIVRIFQAALAIFENVSELPQRIAALKMAFAKCAKSITVVVMERT------ 220 (359)
## T ss_dssp HHHHHHHHHHHHHTGG---GHHHHTTCCCCCCHHHHHHHCSSSSCSSHHHHHHHHHHHHHHTTSCCCEEEETTE------
## T ss_pred hHhHHhHHHHHHhhcc---ccceEEEEecchHHHHHHHHHHHcccCchhhhhHHHHHhhhhcCceeEEEEecCC------
##
##
## Q ss_pred ccchhHhhhhccc-CcchhccHhhHhhCCCCCcceEEEecCcccCCCCCCCcceeeeeecccCCcEEEEeCCcEEEEEeE
## Q YP_009725298.1 151 WQTGDFVKATCEF-CGTENLTKEGATTCGYLPQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRTIAFGGC 229 (638)
## Q Consensus 151 w~~~~fv~~~~~~-cg~~~~~~~~~qs~g~~~~~~v~~~~~~~~~~~~v~~~~~~a~v~~~~~~~~~~~~~~~~~~fgG~ 229 (638)
## ||||+++|. |++. +|+++ ++++.|+.+ ..|+..+.| +
## T Consensus 221 ----n~v~gFac~~c~~~---------sGvi~---~~~~~~~~~------------------------~~G~~v~~f--~ 258 (359)
## T 3LD1_A 221 ----LVVREFAGTCLASI---------NGAVA---KFFEELPNG------------------------FMGAKIFTT--F 258 (359)
## T ss_dssp ----EEEGGGTTSTTHHH---------HHHHH---HHHHTSCBC------------------------GGGCEEETT--E
## T ss_pred ----ccccceeccccccc---------ccHhh---HHhhcCCCc------------------------cccceeEEE--E
##
##
## Q ss_pred EeeecceecCCceEEeeehheec----ccc-ccceee-ee-hhhHHHHHHHHhhceeeccc
## Q YP_009725298.1 230 VFSYVGCHNKCAYWVPRASANIG----CNH-TGVVGE-GS-EGLNDNLLEILQKEKVNINI 283 (638)
## Q Consensus 230 ~f~~~g~v~~~~~~Vp~~~s~v~----~~~-tg~~ga-~v-~g~t~~v~~~~~~~r~e~~~ 283 (638)
## +|| ....++|||+++|.++ ..+ +|++|+ .+ .|..+++...-+++++..+.
## T Consensus 259 ~yw----~~~~~~~Vp~~~s~v~~~~~~~~~tgv~G~~~~v~G~~Ndv~~~~~~~~~~~~~ 315 (359)
## T 3LD1_A 259 AFF----REAAVKIVDNIPNAPRGTKGFEVVGNAKGTQVVVRGMRNDLTLLDQKAEIPVES 315 (359)
## T ss_dssp EEC----SSCEEEEESSCTTSCTTCBEEEEESBCCCEECEEEEECCCEEEEEEECCCCCCS
## T ss_pred eee----cccceeEeecCCCCCCcCCCeEEeccCccceeEEEeeeCcccchhhhccCCCcc
