####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 41 ( 335), selected 41 , name T0955TS488_1 # Molecule2: number of CA atoms 41 ( 665), selected 41 , name T0955.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS488_1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 41 1 - 41 2.46 2.46 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 38 4 - 41 1.85 2.64 LCS_AVERAGE: 89.83 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 28 12 - 39 1.00 3.42 LCS_AVERAGE: 59.31 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 41 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 1 S 1 3 22 41 3 3 4 4 9 14 19 29 35 38 41 41 41 41 41 41 41 41 41 41 LCS_GDT Q 2 Q 2 15 22 41 12 13 19 22 24 27 32 37 39 40 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 3 E 3 15 22 41 12 13 15 22 24 27 36 37 39 40 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 4 T 4 16 38 41 12 13 19 22 24 34 38 38 39 40 41 41 41 41 41 41 41 41 41 41 LCS_GDT R 5 R 5 16 38 41 12 13 19 22 31 36 38 38 39 40 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 6 K 6 16 38 41 12 13 19 23 30 36 38 38 39 40 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 7 K 7 16 38 41 12 13 19 23 31 36 38 38 39 40 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 8 C 8 16 38 41 12 13 25 31 33 36 38 38 39 40 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 9 T 9 16 38 41 12 14 25 31 33 36 38 38 39 40 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 10 E 10 16 38 41 12 18 26 31 33 36 38 38 39 40 41 41 41 41 41 41 41 41 41 41 LCS_GDT M 11 M 11 27 38 41 12 13 26 31 33 36 38 38 39 40 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 12 K 12 28 38 41 12 21 26 31 33 36 38 38 39 40 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 13 K 13 28 38 41 12 21 26 31 33 36 38 38 39 40 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 14 K 14 28 38 41 7 21 25 31 33 36 38 38 39 40 41 41 41 41 41 41 41 41 41 41 LCS_GDT F 15 F 15 28 38 41 11 21 26 31 33 36 38 38 39 40 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 16 K 16 28 38 41 4 21 26 31 33 36 38 38 39 40 41 41 41 41 41 41 41 41 41 41 LCS_GDT N 17 N 17 28 38 41 11 21 26 31 33 36 38 38 39 40 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 18 C 18 28 38 41 11 21 26 31 33 36 38 38 39 40 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 19 E 19 28 38 41 10 21 26 31 33 36 38 38 39 40 41 41 41 41 41 41 41 41 41 41 LCS_GDT V 20 V 20 28 38 41 6 18 26 31 33 36 38 38 39 40 41 41 41 41 41 41 41 41 41 41 LCS_GDT R 21 R 21 28 38 41 7 21 26 31 33 36 38 38 39 40 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 22 C 22 28 38 41 4 13 26 31 33 36 38 38 39 40 41 41 41 41 41 41 41 41 41 41 LCS_GDT D 23 D 23 28 38 41 4 8 22 31 33 36 38 38 39 40 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 24 E 24 28 38 41 4 18 26 31 33 36 38 38 39 40 41 41 41 41 41 41 41 41 41 41 LCS_GDT S 25 S 25 28 38 41 10 21 26 31 33 36 38 38 39 40 41 41 41 41 41 41 41 41 41 41 LCS_GDT N 26 N 26 28 38 41 11 21 26 31 33 36 38 38 39 40 41 41 41 41 41 41 41 41 41 41 LCS_GDT H 27 H 27 28 38 41 11 21 26 31 33 36 38 38 39 40 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 28 C 28 28 38 41 11 21 26 31 33 36 38 38 39 40 41 41 41 41 41 41 41 41 41 41 LCS_GDT V 29 V 29 28 38 41 11 21 26 31 33 36 38 38 39 40 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 30 E 30 28 38 41 10 21 26 31 33 36 38 38 39 40 41 41 41 41 41 41 41 41 41 41 LCS_GDT V 31 V 31 28 38 41 11 21 26 31 33 36 38 38 39 40 41 41 41 41 41 41 41 41 41 41 LCS_GDT R 32 R 32 28 38 41 11 21 26 31 33 36 38 38 39 40 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 33 C 33 28 38 41 6 21 26 31 33 36 38 38 39 40 41 41 41 41 41 41 41 41 41 41 LCS_GDT S 34 S 34 28 38 41 8 21 26 31 33 36 38 38 39 40 41 41 41 41 41 41 41 41 41 41 LCS_GDT D 35 D 35 28 38 41 6 15 25 31 33 36 38 38 39 40 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 36 T 36 28 38 41 4 21 25 31 33 36 38 38 39 40 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 37 K 37 28 38 41 10 21 26 31 33 36 38 38 39 40 41 41 41 41 41 41 41 41 41 41 LCS_GDT Y 38 Y 38 28 38 41 6 18 26 31 33 36 38 38 39 40 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 39 T 39 28 38 41 4 18 26 31 33 36 38 38 39 40 41 41 41 41 41 41 41 41 41 41 LCS_GDT L 40 L 40 23 38 41 6 18 24 31 33 36 38 38 39 40 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 41 C 41 18 38 41 3 4 19 26 32 36 38 38 39 40 41 41 41 41 41 41 41 41 41 41 LCS_AVERAGE LCS_A: 83.05 ( 59.31 89.83 100.00 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 12 21 26 31 33 36 38 38 39 40 41 41 41 41 41 41 41 41 41 41 GDT PERCENT_AT 29.27 51.22 63.41 75.61 80.49 87.80 92.68 92.68 95.12 97.56 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 GDT RMS_LOCAL 0.35 0.64 0.96 1.13 1.23 1.61 1.85 1.85 2.06 2.23 2.46 2.46 2.46 2.46 2.46 2.46 2.46 2.46 2.46 2.46 GDT RMS_ALL_AT 5.04 3.49 3.15 3.13 3.09 2.81 2.64 2.64 2.54 2.48 2.46 2.46 2.46 2.46 2.46 2.46 2.46 2.46 2.46 2.46 # Checking swapping # possible swapping detected: E 3 E 3 # possible swapping detected: E 19 E 19 # possible swapping detected: D 23 D 23 # possible swapping detected: E 24 E 24 # possible swapping detected: Y 38 Y 38 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA S 1 S 1 8.406 0 0.107 0.776 10.923 0.000 0.000 7.661 LGA Q 2 Q 2 6.682 0 0.210 0.956 7.216 0.000 0.000 6.167 LGA E 3 E 3 6.348 0 0.029 1.507 10.477 0.000 0.000 9.583 LGA T 4 T 4 4.302 0 0.035 1.116 5.120 8.636 9.870 4.543 LGA R 5 R 5 3.403 0 0.016 0.237 7.396 18.636 8.430 7.396 LGA K 6 K 6 3.545 0 0.017 1.279 11.041 21.818 10.303 11.041 LGA K 7 K 7 3.056 0 0.015 0.703 4.205 28.182 20.606 3.267 LGA C 8 C 8 1.339 0 0.017 0.769 2.090 66.818 61.515 1.988 LGA T 9 T 9 1.014 0 0.020 0.110 2.699 74.091 58.961 2.699 LGA E 10 E 10 1.097 0 0.028 0.905 3.757 59.091 41.616 3.757 LGA M 11 M 11 1.867 0 0.045 0.112 3.511 51.364 40.455 3.511 LGA K 12 K 12 1.744 0 0.029 0.622 2.573 45.455 50.101 1.564 LGA K 13 K 13 2.433 0 0.097 0.608 3.843 30.455 31.717 3.843 LGA K 14 K 14 2.579 0 0.040 0.974 8.071 35.455 20.000 8.071 LGA F 15 F 15 1.405 0 0.070 0.237 2.941 61.818 49.587 2.941 LGA K 16 K 16 1.987 0 0.034 1.220 7.125 50.909 29.091 6.918 LGA N 17 N 17 1.171 0 0.205 0.468 2.332 69.545 68.182 2.332 LGA C 18 C 18 0.570 0 0.027 0.044 0.758 81.818 87.879 0.461 LGA E 19 E 19 0.776 0 0.210 0.489 2.764 81.818 66.869 1.413 LGA V 20 V 20 0.975 0 0.064 0.105 1.087 73.636 72.468 1.029 LGA R 21 R 21 0.896 0 0.026 1.463 3.185 77.727 58.512 1.397 LGA C 22 C 22 2.160 0 0.096 0.148 3.509 41.364 32.424 3.509 LGA D 23 D 23 2.706 0 0.367 1.158 4.660 20.909 19.773 2.865 LGA E 24 E 24 1.434 0 0.030 0.611 2.655 61.818 45.253 2.655 LGA S 25 S 25 1.147 0 0.016 0.733 3.499 69.545 60.303 3.499 LGA N 26 N 26 1.154 0 0.080 1.184 5.640 65.455 45.455 5.640 LGA H 27 H 27 1.220 0 0.067 0.272 1.895 65.455 61.091 1.895 LGA C 28 C 28 0.897 0 0.135 0.167 1.114 77.727 76.364 1.114 LGA V 29 V 29 0.809 0 0.043 0.080 1.189 77.727 77.143 0.675 LGA E 30 E 30 0.520 0 0.119 0.643 3.115 90.909 73.535 0.816 LGA V 31 V 31 0.305 0 0.068 0.108 0.633 95.455 94.805 0.492 LGA R 32 R 32 0.591 0 0.120 0.751 2.091 86.818 64.298 1.475 LGA C 33 C 33 0.829 0 0.551 1.044 3.335 61.818 57.879 3.059 LGA S 34 S 34 1.169 0 0.244 0.561 2.752 61.818 59.394 2.752 LGA D 35 D 35 2.464 0 0.153 0.956 7.035 38.182 21.364 7.035 LGA T 36 T 36 1.989 0 0.030 0.156 2.840 59.091 48.571 2.840 LGA K 37 K 37 0.383 0 0.135 1.496 5.484 78.182 55.960 5.484 LGA Y 38 Y 38 1.185 0 0.017 1.338 5.270 82.273 45.909 5.270 LGA T 39 T 39 1.288 0 0.065 0.083 2.646 55.000 46.234 2.178 LGA L 40 L 40 1.250 0 0.191 0.974 2.776 69.545 55.909 2.776 LGA C 41 C 41 2.715 0 0.357 0.529 4.621 35.909 23.117 4.383 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 41 164 164 100.00 335 335 100.00 41 41 SUMMARY(RMSD_GDC): 2.457 2.480 3.182 54.446 45.145 29.667 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 41 41 4.0 38 1.85 79.878 85.989 1.952 LGA_LOCAL RMSD: 1.847 Number of atoms: 38 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 2.638 Number of assigned atoms: 41 Std_ASGN_ATOMS RMSD: 2.457 Standard rmsd on all 41 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.638417 * X + 0.118061 * Y + -0.760582 * Z + 8.948838 Y_new = 0.736488 * X + 0.380805 * Y + -0.559083 * Z + -25.226170 Z_new = 0.223627 * X + -0.917087 * Y + -0.330063 * Z + 20.130136 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 2.284986 -0.225535 -1.916266 [DEG: 130.9201 -12.9222 -109.7940 ] ZXZ: -0.936917 1.907166 2.902415 [DEG: -53.6814 109.2726 166.2961 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0955TS488_1 REMARK 2: T0955.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS488_1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 41 41 4.0 38 1.85 85.989 2.46 REMARK ---------------------------------------------------------- MOLECULE T0955TS488_1 PFRMAT TS TARGET T0955 MODEL 1 PARENT 2fn0_A 3g0t_A ATOM 1 N SER 1 -7.289 -10.520 3.773 1.00 0.00 N ATOM 2 CA SER 1 -5.988 -11.141 4.014 1.00 0.00 C ATOM 3 C SER 1 -5.146 -10.391 5.041 1.00 0.00 C ATOM 4 O SER 1 -4.702 -9.271 4.791 1.00 0.00 O ATOM 5 CB SER 1 -5.217 -11.231 2.717 1.00 0.00 C ATOM 6 OG SER 1 -3.899 -11.656 2.934 1.00 0.00 O ATOM 14 N GLN 2 -4.911 -11.031 6.186 1.00 0.00 N ATOM 15 CA GLN 2 -4.105 -10.442 7.251 1.00 0.00 C ATOM 16 C GLN 2 -2.648 -10.318 6.839 1.00 0.00 C ATOM 17 O GLN 2 -1.973 -9.366 7.222 1.00 0.00 O ATOM 18 CB GLN 2 -4.219 -11.255 8.535 1.00 0.00 C ATOM 19 CG GLN 2 -3.512 -10.623 9.722 1.00 0.00 C ATOM 20 CD GLN 2 -4.093 -9.267 10.088 1.00 0.00 C ATOM 21 OE1 GLN 2 -5.314 -9.082 10.128 1.00 0.00 O ATOM 22 NE2 GLN 2 -3.213 -8.311 10.366 1.00 0.00 N ATOM 31 N GLU 3 -2.167 -11.273 6.045 1.00 0.00 N ATOM 32 CA GLU 3 -0.799 -11.225 5.563 1.00 0.00 C ATOM 33 C GLU 3 -0.643 -10.072 4.580 1.00 0.00 C ATOM 34 O GLU 3 0.406 -9.430 4.537 1.00 0.00 O ATOM 35 CB GLU 3 -0.406 -12.549 4.914 1.00 0.00 C ATOM 36 CG GLU 3 -0.296 -13.711 5.894 1.00 0.00 C ATOM 37 CD GLU 3 0.766 -13.496 6.940 1.00 0.00 C ATOM 38 OE1 GLU 3 1.860 -13.129 6.586 1.00 0.00 O ATOM 39 OE2 GLU 3 0.483 -13.692 8.101 1.00 0.00 O ATOM 46 N THR 4 -1.702 -9.790 3.815 1.00 0.00 N ATOM 47 CA THR 4 -1.694 -8.644 2.918 1.00 0.00 C ATOM 48 C THR 4 -1.680 -7.363 3.739 1.00 0.00 C ATOM 49 O THR 4 -0.999 -6.413 3.369 1.00 0.00 O ATOM 50 CB THR 4 -2.883 -8.638 1.955 1.00 0.00 C ATOM 51 OG1 THR 4 -2.843 -9.823 1.141 1.00 0.00 O ATOM 52 CG2 THR 4 -2.808 -7.407 1.066 1.00 0.00 C ATOM 60 N ARG 5 -2.420 -7.338 4.853 1.00 0.00 N ATOM 61 CA ARG 5 -2.416 -6.182 5.753 1.00 0.00 C ATOM 62 C ARG 5 -1.014 -5.939 6.322 1.00 0.00 C ATOM 63 O ARG 5 -0.584 -4.790 6.463 1.00 0.00 O ATOM 64 CB ARG 5 -3.396 -6.381 6.900 1.00 0.00 C ATOM 65 CG ARG 5 -4.865 -6.308 6.526 1.00 0.00 C ATOM 66 CD ARG 5 -5.731 -6.634 7.686 1.00 0.00 C ATOM 67 NE ARG 5 -7.144 -6.515 7.372 1.00 0.00 N ATOM 68 CZ ARG 5 -8.140 -7.041 8.112 1.00 0.00 C ATOM 69 NH1 ARG 5 -7.865 -7.738 9.195 1.00 0.00 N ATOM 70 NH2 ARG 5 -9.398 -6.856 7.750 1.00 0.00 N ATOM 84 N LYS 6 -0.289 -7.022 6.613 1.00 0.00 N ATOM 85 CA LYS 6 1.093 -6.909 7.065 1.00 0.00 C ATOM 86 C LYS 6 1.924 -6.294 5.941 1.00 0.00 C ATOM 87 O LYS 6 2.741 -5.396 6.170 1.00 0.00 O ATOM 88 CB LYS 6 1.646 -8.282 7.446 1.00 0.00 C ATOM 89 CG LYS 6 1.046 -8.892 8.704 1.00 0.00 C ATOM 90 CD LYS 6 1.606 -10.284 8.941 1.00 0.00 C ATOM 91 CE LYS 6 0.981 -10.946 10.160 1.00 0.00 C ATOM 92 NZ LYS 6 1.476 -12.340 10.342 1.00 0.00 N ATOM 106 N LYS 7 1.674 -6.764 4.716 1.00 0.00 N ATOM 107 CA LYS 7 2.322 -6.228 3.533 1.00 0.00 C ATOM 108 C LYS 7 1.942 -4.774 3.299 1.00 0.00 C ATOM 109 O LYS 7 2.779 -4.009 2.815 1.00 0.00 O ATOM 110 CB LYS 7 2.000 -7.046 2.289 1.00 0.00 C ATOM 111 CG LYS 7 2.736 -6.551 1.052 1.00 0.00 C ATOM 112 CD LYS 7 2.510 -7.456 -0.145 1.00 0.00 C ATOM 113 CE LYS 7 3.249 -6.934 -1.369 1.00 0.00 C ATOM 114 NZ LYS 7 3.084 -7.830 -2.544 1.00 0.00 N ATOM 128 N CYS 8 0.694 -4.384 3.628 1.00 0.00 N ATOM 129 CA CYS 8 0.292 -2.998 3.442 1.00 0.00 C ATOM 130 C CYS 8 1.287 -2.090 4.136 1.00 0.00 C ATOM 131 O CYS 8 1.801 -1.146 3.541 1.00 0.00 O ATOM 132 CB CYS 8 -1.132 -2.744 3.934 1.00 0.00 C ATOM 133 SG CYS 8 -2.407 -3.498 2.883 1.00 0.00 S ATOM 138 N THR 9 1.540 -2.419 5.413 1.00 0.00 N ATOM 139 CA THR 9 2.469 -1.692 6.270 1.00 0.00 C ATOM 140 C THR 9 3.860 -1.658 5.669 1.00 0.00 C ATOM 141 O THR 9 4.500 -0.607 5.659 1.00 0.00 O ATOM 142 CB THR 9 2.550 -2.312 7.676 1.00 0.00 C ATOM 143 OG1 THR 9 1.265 -2.253 8.309 1.00 0.00 O ATOM 144 CG2 THR 9 3.564 -1.552 8.516 1.00 0.00 C ATOM 152 N GLU 10 4.317 -2.797 5.148 1.00 0.00 N ATOM 153 CA GLU 10 5.619 -2.859 4.495 1.00 0.00 C ATOM 154 C GLU 10 5.703 -1.843 3.353 1.00 0.00 C ATOM 155 O GLU 10 6.742 -1.218 3.145 1.00 0.00 O ATOM 156 CB GLU 10 5.891 -4.267 3.965 1.00 0.00 C ATOM 157 CG GLU 10 7.272 -4.447 3.354 1.00 0.00 C ATOM 158 CD GLU 10 8.377 -4.307 4.367 1.00 0.00 C ATOM 159 OE1 GLU 10 8.114 -4.483 5.535 1.00 0.00 O ATOM 160 OE2 GLU 10 9.483 -4.019 3.979 1.00 0.00 O ATOM 167 N MET 11 4.600 -1.672 2.625 1.00 0.00 N ATOM 168 CA MET 11 4.532 -0.687 1.554 1.00 0.00 C ATOM 169 C MET 11 4.396 0.736 2.128 1.00 0.00 C ATOM 170 O MET 11 4.968 1.686 1.586 1.00 0.00 O ATOM 171 CB MET 11 3.365 -1.007 0.630 1.00 0.00 C ATOM 172 CG MET 11 3.495 -2.318 -0.132 1.00 0.00 C ATOM 173 SD MET 11 4.944 -2.393 -1.201 1.00 0.00 S ATOM 174 CE MET 11 6.073 -3.342 -0.189 1.00 0.00 C ATOM 184 N LYS 12 3.685 0.863 3.260 1.00 0.00 N ATOM 185 CA LYS 12 3.520 2.143 3.951 1.00 0.00 C ATOM 186 C LYS 12 4.855 2.670 4.445 1.00 0.00 C ATOM 187 O LYS 12 5.031 3.873 4.579 1.00 0.00 O ATOM 188 CB LYS 12 2.561 2.038 5.143 1.00 0.00 C ATOM 189 CG LYS 12 1.090 1.841 4.806 1.00 0.00 C ATOM 190 CD LYS 12 0.256 1.726 6.075 1.00 0.00 C ATOM 191 CE LYS 12 -1.225 1.537 5.773 1.00 0.00 C ATOM 192 NZ LYS 12 -2.034 1.418 7.023 1.00 0.00 N ATOM 206 N LYS 13 5.823 1.782 4.668 1.00 0.00 N ATOM 207 CA LYS 13 7.161 2.202 5.067 1.00 0.00 C ATOM 208 C LYS 13 7.795 3.128 4.018 1.00 0.00 C ATOM 209 O LYS 13 8.639 3.961 4.355 1.00 0.00 O ATOM 210 CB LYS 13 8.059 0.985 5.280 1.00 0.00 C ATOM 211 CG LYS 13 7.718 0.142 6.499 1.00 0.00 C ATOM 212 CD LYS 13 8.617 -1.080 6.580 1.00 0.00 C ATOM 213 CE LYS 13 8.278 -1.949 7.781 1.00 0.00 C ATOM 214 NZ LYS 13 9.100 -3.192 7.811 1.00 0.00 N ATOM 228 N LYS 14 7.392 2.980 2.749 1.00 0.00 N ATOM 229 CA LYS 14 7.887 3.833 1.680 1.00 0.00 C ATOM 230 C LYS 14 7.077 5.124 1.622 1.00 0.00 C ATOM 231 O LYS 14 7.631 6.204 1.415 1.00 0.00 O ATOM 232 CB LYS 14 7.828 3.106 0.335 1.00 0.00 C ATOM 233 CG LYS 14 8.416 3.896 -0.828 1.00 0.00 C ATOM 234 CD LYS 14 8.484 3.055 -2.095 1.00 0.00 C ATOM 235 CE LYS 14 9.109 3.836 -3.243 1.00 0.00 C ATOM 236 NZ LYS 14 9.241 3.012 -4.476 1.00 0.00 N ATOM 250 N PHE 15 5.764 5.011 1.826 1.00 0.00 N ATOM 251 CA PHE 15 4.896 6.187 1.811 1.00 0.00 C ATOM 252 C PHE 15 4.050 6.291 3.080 1.00 0.00 C ATOM 253 O PHE 15 2.825 6.149 3.041 1.00 0.00 O ATOM 254 CB PHE 15 3.972 6.151 0.601 1.00 0.00 C ATOM 255 CG PHE 15 4.666 6.140 -0.731 1.00 0.00 C ATOM 256 CD1 PHE 15 4.772 4.967 -1.457 1.00 0.00 C ATOM 257 CD2 PHE 15 5.197 7.300 -1.266 1.00 0.00 C ATOM 258 CE1 PHE 15 5.387 4.955 -2.691 1.00 0.00 C ATOM 259 CE2 PHE 15 5.819 7.291 -2.497 1.00 0.00 C ATOM 260 CZ PHE 15 5.912 6.116 -3.211 1.00 0.00 C ATOM 270 N LYS 16 4.714 6.581 4.202 1.00 0.00 N ATOM 271 CA LYS 16 4.070 6.659 5.517 1.00 0.00 C ATOM 272 C LYS 16 3.055 7.789 5.647 1.00 0.00 C ATOM 273 O LYS 16 2.132 7.706 6.457 1.00 0.00 O ATOM 274 CB LYS 16 5.126 6.822 6.617 1.00 0.00 C ATOM 275 CG LYS 16 5.996 5.597 6.866 1.00 0.00 C ATOM 276 CD LYS 16 6.997 5.848 7.981 1.00 0.00 C ATOM 277 CE LYS 16 7.860 4.624 8.246 1.00 0.00 C ATOM 278 NZ LYS 16 8.855 4.877 9.327 1.00 0.00 N ATOM 292 N ASN 17 3.222 8.843 4.857 1.00 0.00 N ATOM 293 CA ASN 17 2.321 9.983 4.913 1.00 0.00 C ATOM 294 C ASN 17 1.230 9.933 3.842 1.00 0.00 C ATOM 295 O ASN 17 0.540 10.930 3.619 1.00 0.00 O ATOM 296 CB ASN 17 3.110 11.271 4.793 1.00 0.00 C ATOM 297 CG ASN 17 3.979 11.524 5.994 1.00 0.00 C ATOM 298 OD1 ASN 17 3.576 11.270 7.134 1.00 0.00 O ATOM 299 ND2 ASN 17 5.166 12.025 5.760 1.00 0.00 N ATOM 306 N CYS 18 1.071 8.787 3.179 1.00 0.00 N ATOM 307 CA CYS 18 0.067 8.656 2.131 1.00 0.00 C ATOM 308 C CYS 18 -1.015 7.656 2.515 1.00 0.00 C ATOM 309 O CYS 18 -0.827 6.848 3.425 1.00 0.00 O ATOM 310 CB CYS 18 0.733 8.213 0.842 1.00 0.00 C ATOM 311 SG CYS 18 1.981 9.371 0.232 1.00 0.00 S ATOM 317 N GLU 19 -2.155 7.713 1.824 1.00 0.00 N ATOM 318 CA GLU 19 -3.236 6.773 2.107 1.00 0.00 C ATOM 319 C GLU 19 -2.966 5.492 1.352 1.00 0.00 C ATOM 320 O GLU 19 -2.753 5.510 0.143 1.00 0.00 O ATOM 321 CB GLU 19 -4.598 7.338 1.709 1.00 0.00 C ATOM 322 CG GLU 19 -5.775 6.427 2.030 1.00 0.00 C ATOM 323 CD GLU 19 -7.098 6.988 1.579 1.00 0.00 C ATOM 324 OE1 GLU 19 -7.108 8.030 0.967 1.00 0.00 O ATOM 325 OE2 GLU 19 -8.102 6.371 1.843 1.00 0.00 O ATOM 332 N VAL 20 -2.948 4.372 2.060 1.00 0.00 N ATOM 333 CA VAL 20 -2.620 3.118 1.403 1.00 0.00 C ATOM 334 C VAL 20 -3.692 2.044 1.550 1.00 0.00 C ATOM 335 O VAL 20 -4.159 1.749 2.653 1.00 0.00 O ATOM 336 CB VAL 20 -1.270 2.580 1.935 1.00 0.00 C ATOM 337 CG1 VAL 20 -0.941 1.241 1.288 1.00 0.00 C ATOM 338 CG2 VAL 20 -0.166 3.593 1.643 1.00 0.00 C ATOM 348 N ARG 21 -4.056 1.452 0.415 1.00 0.00 N ATOM 349 CA ARG 21 -5.031 0.370 0.334 1.00 0.00 C ATOM 350 C ARG 21 -4.494 -0.722 -0.573 1.00 0.00 C ATOM 351 O ARG 21 -4.146 -0.446 -1.720 1.00 0.00 O ATOM 352 CB ARG 21 -6.361 0.865 -0.205 1.00 0.00 C ATOM 353 CG ARG 21 -7.442 -0.201 -0.277 1.00 0.00 C ATOM 354 CD ARG 21 -8.739 0.349 -0.746 1.00 0.00 C ATOM 355 NE ARG 21 -8.654 0.849 -2.111 1.00 0.00 N ATOM 356 CZ ARG 21 -9.706 1.254 -2.849 1.00 0.00 C ATOM 357 NH1 ARG 21 -10.923 1.188 -2.356 1.00 0.00 N ATOM 358 NH2 ARG 21 -9.507 1.715 -4.071 1.00 0.00 N ATOM 372 N CYS 22 -4.421 -1.964 -0.090 1.00 0.00 N ATOM 373 CA CYS 22 -3.811 -2.913 -0.986 1.00 0.00 C ATOM 374 C CYS 22 -4.913 -3.623 -1.776 1.00 0.00 C ATOM 375 O CYS 22 -5.846 -4.187 -1.199 1.00 0.00 O ATOM 376 CB CYS 22 -3.027 -3.948 -0.177 1.00 0.00 C ATOM 377 SG CYS 22 -1.722 -3.253 0.872 1.00 0.00 S ATOM 382 N ASP 23 -4.800 -3.611 -3.091 1.00 0.00 N ATOM 383 CA ASP 23 -5.785 -4.255 -3.951 1.00 0.00 C ATOM 384 C ASP 23 -5.541 -5.747 -4.029 1.00 0.00 C ATOM 385 O ASP 23 -4.824 -6.223 -4.909 1.00 0.00 O ATOM 386 CB ASP 23 -5.760 -3.640 -5.356 1.00 0.00 C ATOM 387 CG ASP 23 -6.803 -4.226 -6.293 1.00 0.00 C ATOM 388 OD1 ASP 23 -7.332 -5.268 -5.987 1.00 0.00 O ATOM 389 OD2 ASP 23 -7.057 -3.633 -7.316 1.00 0.00 O ATOM 394 N GLU 24 -6.169 -6.477 -3.108 1.00 0.00 N ATOM 395 CA GLU 24 -6.037 -7.930 -3.002 1.00 0.00 C ATOM 396 C GLU 24 -6.495 -8.666 -4.258 1.00 0.00 C ATOM 397 O GLU 24 -5.932 -9.703 -4.611 1.00 0.00 O ATOM 398 CB GLU 24 -6.854 -8.452 -1.812 1.00 0.00 C ATOM 399 CG GLU 24 -6.327 -8.078 -0.435 1.00 0.00 C ATOM 400 CD GLU 24 -7.209 -8.587 0.679 1.00 0.00 C ATOM 401 OE1 GLU 24 -8.262 -9.100 0.386 1.00 0.00 O ATOM 402 OE2 GLU 24 -6.832 -8.474 1.824 1.00 0.00 O ATOM 409 N SER 25 -7.528 -8.143 -4.917 1.00 0.00 N ATOM 410 CA SER 25 -8.069 -8.759 -6.124 1.00 0.00 C ATOM 411 C SER 25 -7.064 -8.758 -7.271 1.00 0.00 C ATOM 412 O SER 25 -6.877 -9.776 -7.941 1.00 0.00 O ATOM 413 CB SER 25 -9.332 -8.038 -6.552 1.00 0.00 C ATOM 414 OG SER 25 -9.868 -8.610 -7.714 1.00 0.00 O ATOM 420 N ASN 26 -6.425 -7.613 -7.501 1.00 0.00 N ATOM 421 CA ASN 26 -5.455 -7.494 -8.584 1.00 0.00 C ATOM 422 C ASN 26 -4.008 -7.624 -8.110 1.00 0.00 C ATOM 423 O ASN 26 -3.090 -7.623 -8.931 1.00 0.00 O ATOM 424 CB ASN 26 -5.643 -6.174 -9.302 1.00 0.00 C ATOM 425 CG ASN 26 -6.949 -6.099 -10.044 1.00 0.00 C ATOM 426 OD1 ASN 26 -7.223 -6.917 -10.930 1.00 0.00 O ATOM 427 ND2 ASN 26 -7.764 -5.136 -9.692 1.00 0.00 N ATOM 434 N HIS 27 -3.812 -7.758 -6.797 1.00 0.00 N ATOM 435 CA HIS 27 -2.492 -7.908 -6.189 1.00 0.00 C ATOM 436 C HIS 27 -1.596 -6.699 -6.461 1.00 0.00 C ATOM 437 O HIS 27 -0.419 -6.845 -6.794 1.00 0.00 O ATOM 438 CB HIS 27 -1.829 -9.194 -6.685 1.00 0.00 C ATOM 439 CG HIS 27 -2.651 -10.411 -6.394 1.00 0.00 C ATOM 440 ND1 HIS 27 -2.806 -10.914 -5.120 1.00 0.00 N ATOM 441 CD2 HIS 27 -3.372 -11.215 -7.209 1.00 0.00 C ATOM 442 CE1 HIS 27 -3.585 -11.981 -5.165 1.00 0.00 C ATOM 443 NE2 HIS 27 -3.941 -12.184 -6.421 1.00 0.00 N ATOM 451 N CYS 28 -2.170 -5.510 -6.311 1.00 0.00 N ATOM 452 CA CYS 28 -1.453 -4.247 -6.490 1.00 0.00 C ATOM 453 C CYS 28 -1.677 -3.384 -5.265 1.00 0.00 C ATOM 454 O CYS 28 -2.680 -3.553 -4.590 1.00 0.00 O ATOM 455 CB CYS 28 -1.942 -3.508 -7.737 1.00 0.00 C ATOM 456 SG CYS 28 -1.705 -4.418 -9.280 1.00 0.00 S ATOM 462 N VAL 29 -0.774 -2.464 -4.965 1.00 0.00 N ATOM 463 CA VAL 29 -0.985 -1.611 -3.800 1.00 0.00 C ATOM 464 C VAL 29 -1.176 -0.158 -4.202 1.00 0.00 C ATOM 465 O VAL 29 -0.342 0.424 -4.893 1.00 0.00 O ATOM 466 CB VAL 29 0.180 -1.754 -2.821 1.00 0.00 C ATOM 467 CG1 VAL 29 -0.016 -0.827 -1.631 1.00 0.00 C ATOM 468 CG2 VAL 29 0.266 -3.207 -2.377 1.00 0.00 C ATOM 478 N GLU 30 -2.298 0.416 -3.771 1.00 0.00 N ATOM 479 CA GLU 30 -2.668 1.787 -4.104 1.00 0.00 C ATOM 480 C GLU 30 -2.207 2.785 -3.056 1.00 0.00 C ATOM 481 O GLU 30 -2.596 2.707 -1.892 1.00 0.00 O ATOM 482 CB GLU 30 -4.191 1.885 -4.267 1.00 0.00 C ATOM 483 CG GLU 30 -4.724 3.265 -4.641 1.00 0.00 C ATOM 484 CD GLU 30 -6.227 3.282 -4.779 1.00 0.00 C ATOM 485 OE1 GLU 30 -6.825 2.234 -4.687 1.00 0.00 O ATOM 486 OE2 GLU 30 -6.786 4.343 -4.959 1.00 0.00 O ATOM 493 N VAL 31 -1.393 3.745 -3.486 1.00 0.00 N ATOM 494 CA VAL 31 -0.891 4.795 -2.610 1.00 0.00 C ATOM 495 C VAL 31 -1.404 6.153 -3.063 1.00 0.00 C ATOM 496 O VAL 31 -1.192 6.541 -4.207 1.00 0.00 O ATOM 497 CB VAL 31 0.629 4.822 -2.634 1.00 0.00 C ATOM 498 CG1 VAL 31 1.122 5.931 -1.740 1.00 0.00 C ATOM 499 CG2 VAL 31 1.201 3.470 -2.225 1.00 0.00 C ATOM 509 N ARG 32 -2.069 6.883 -2.177 1.00 0.00 N ATOM 510 CA ARG 32 -2.624 8.179 -2.549 1.00 0.00 C ATOM 511 C ARG 32 -1.927 9.358 -1.882 1.00 0.00 C ATOM 512 O ARG 32 -1.920 9.486 -0.655 1.00 0.00 O ATOM 513 CB ARG 32 -4.084 8.234 -2.192 1.00 0.00 C ATOM 514 CG ARG 32 -4.946 7.197 -2.873 1.00 0.00 C ATOM 515 CD ARG 32 -6.345 7.291 -2.406 1.00 0.00 C ATOM 516 NE ARG 32 -7.194 6.310 -3.046 1.00 0.00 N ATOM 517 CZ ARG 32 -8.487 6.101 -2.744 1.00 0.00 C ATOM 518 NH1 ARG 32 -9.075 6.806 -1.802 1.00 0.00 N ATOM 519 NH2 ARG 32 -9.149 5.174 -3.411 1.00 0.00 N ATOM 533 N CYS 33 -1.380 10.247 -2.703 1.00 0.00 N ATOM 534 CA CYS 33 -0.720 11.454 -2.226 1.00 0.00 C ATOM 535 C CYS 33 -1.312 12.662 -2.935 1.00 0.00 C ATOM 536 O CYS 33 -0.770 13.128 -3.938 1.00 0.00 O ATOM 537 CB CYS 33 0.778 11.404 -2.502 1.00 0.00 C ATOM 538 SG CYS 33 1.694 12.819 -1.847 1.00 0.00 S ATOM 544 N SER 34 -2.408 13.185 -2.391 1.00 0.00 N ATOM 545 CA SER 34 -3.123 14.294 -3.010 1.00 0.00 C ATOM 546 C SER 34 -3.469 13.944 -4.468 1.00 0.00 C ATOM 547 O SER 34 -4.235 13.009 -4.705 1.00 0.00 O ATOM 548 CB SER 34 -2.297 15.570 -2.908 1.00 0.00 C ATOM 549 OG SER 34 -3.066 16.702 -3.220 1.00 0.00 O ATOM 555 N ASP 35 -2.931 14.683 -5.439 1.00 0.00 N ATOM 556 CA ASP 35 -3.249 14.430 -6.842 1.00 0.00 C ATOM 557 C ASP 35 -2.362 13.367 -7.510 1.00 0.00 C ATOM 558 O ASP 35 -2.567 13.044 -8.682 1.00 0.00 O ATOM 559 CB ASP 35 -3.156 15.732 -7.636 1.00 0.00 C ATOM 560 CG ASP 35 -4.230 16.735 -7.239 1.00 0.00 C ATOM 561 OD1 ASP 35 -5.236 16.322 -6.716 1.00 0.00 O ATOM 562 OD2 ASP 35 -4.032 17.906 -7.460 1.00 0.00 O ATOM 567 N THR 36 -1.382 12.829 -6.781 1.00 0.00 N ATOM 568 CA THR 36 -0.486 11.816 -7.333 1.00 0.00 C ATOM 569 C THR 36 -0.666 10.466 -6.653 1.00 0.00 C ATOM 570 O THR 36 -0.631 10.363 -5.430 1.00 0.00 O ATOM 571 CB THR 36 0.991 12.245 -7.203 1.00 0.00 C ATOM 572 OG1 THR 36 1.210 13.458 -7.935 1.00 0.00 O ATOM 573 CG2 THR 36 1.912 11.155 -7.736 1.00 0.00 C ATOM 581 N LYS 37 -0.842 9.423 -7.450 1.00 0.00 N ATOM 582 CA LYS 37 -0.970 8.092 -6.885 1.00 0.00 C ATOM 583 C LYS 37 0.197 7.216 -7.311 1.00 0.00 C ATOM 584 O LYS 37 0.803 7.442 -8.361 1.00 0.00 O ATOM 585 CB LYS 37 -2.291 7.437 -7.289 1.00 0.00 C ATOM 586 CG LYS 37 -3.541 8.125 -6.751 1.00 0.00 C ATOM 587 CD LYS 37 -4.791 7.346 -7.134 1.00 0.00 C ATOM 588 CE LYS 37 -6.061 8.034 -6.651 1.00 0.00 C ATOM 589 NZ LYS 37 -7.279 7.263 -7.022 1.00 0.00 N ATOM 603 N TYR 38 0.508 6.217 -6.494 1.00 0.00 N ATOM 604 CA TYR 38 1.608 5.312 -6.797 1.00 0.00 C ATOM 605 C TYR 38 1.111 3.876 -6.766 1.00 0.00 C ATOM 606 O TYR 38 0.187 3.541 -6.020 1.00 0.00 O ATOM 607 CB TYR 38 2.751 5.473 -5.786 1.00 0.00 C ATOM 608 CG TYR 38 3.292 6.876 -5.664 1.00 0.00 C ATOM 609 CD1 TYR 38 2.708 7.756 -4.762 1.00 0.00 C ATOM 610 CD2 TYR 38 4.369 7.281 -6.433 1.00 0.00 C ATOM 611 CE1 TYR 38 3.203 9.037 -4.629 1.00 0.00 C ATOM 612 CE2 TYR 38 4.865 8.563 -6.299 1.00 0.00 C ATOM 613 CZ TYR 38 4.287 9.438 -5.402 1.00 0.00 C ATOM 614 OH TYR 38 4.789 10.712 -5.269 1.00 0.00 O ATOM 624 N THR 39 1.725 3.022 -7.579 1.00 0.00 N ATOM 625 CA THR 39 1.367 1.610 -7.595 1.00 0.00 C ATOM 626 C THR 39 2.555 0.776 -7.159 1.00 0.00 C ATOM 627 O THR 39 3.619 0.826 -7.777 1.00 0.00 O ATOM 628 CB THR 39 0.907 1.142 -8.990 1.00 0.00 C ATOM 629 OG1 THR 39 -0.243 1.891 -9.402 1.00 0.00 O ATOM 630 CG2 THR 39 0.552 -0.339 -8.942 1.00 0.00 C ATOM 638 N LEU 40 2.372 0.005 -6.096 1.00 0.00 N ATOM 639 CA LEU 40 3.445 -0.842 -5.597 1.00 0.00 C ATOM 640 C LEU 40 3.100 -2.318 -5.762 1.00 0.00 C ATOM 641 O LEU 40 1.929 -2.695 -5.834 1.00 0.00 O ATOM 642 CB LEU 40 3.751 -0.507 -4.131 1.00 0.00 C ATOM 643 CG LEU 40 4.151 0.951 -3.861 1.00 0.00 C ATOM 644 CD1 LEU 40 4.315 1.159 -2.365 1.00 0.00 C ATOM 645 CD2 LEU 40 5.447 1.257 -4.595 1.00 0.00 C ATOM 657 N CYS 41 4.132 -3.152 -5.848 1.00 0.00 N ATOM 658 CA CYS 41 3.946 -4.588 -6.030 1.00 0.00 C ATOM 659 C CYS 41 4.412 -5.379 -4.812 1.00 0.00 C ATOM 660 O CYS 41 4.171 -6.585 -4.721 1.00 0.00 O ATOM 661 OXT CYS 41 5.056 -4.819 -3.928 1.00 0.00 O ATOM 662 CB CYS 41 4.707 -5.072 -7.265 1.00 0.00 C ATOM 663 SG CYS 41 4.153 -4.324 -8.816 1.00 0.00 S TER END