####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 41 ( 339), selected 41 , name T0955TS387_1 # Molecule2: number of CA atoms 41 ( 665), selected 41 , name T0955.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS387_1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 38 3 - 40 4.95 5.39 LONGEST_CONTINUOUS_SEGMENT: 38 4 - 41 4.98 5.43 LCS_AVERAGE: 92.21 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 20 4 - 23 1.80 7.18 LCS_AVERAGE: 33.14 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 12 4 - 15 0.62 7.74 LCS_AVERAGE: 16.24 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 41 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 1 S 1 3 4 34 0 3 3 4 5 5 7 10 12 19 20 25 30 31 33 35 37 41 41 41 LCS_GDT Q 2 Q 2 3 4 34 1 4 5 5 7 9 13 17 21 25 30 33 34 35 38 39 39 41 41 41 LCS_GDT E 3 E 3 3 13 38 0 3 3 8 12 18 20 24 25 29 32 33 35 36 38 39 39 41 41 41 LCS_GDT T 4 T 4 12 20 38 7 12 15 17 19 21 22 24 24 27 31 33 35 36 38 39 39 41 41 41 LCS_GDT R 5 R 5 12 20 38 7 12 15 17 19 21 22 24 25 29 32 33 35 36 38 39 39 41 41 41 LCS_GDT K 6 K 6 12 20 38 7 12 15 17 19 21 22 24 25 29 32 33 35 36 38 39 39 41 41 41 LCS_GDT K 7 K 7 12 20 38 8 12 15 17 19 21 22 24 25 29 32 33 35 36 38 39 39 41 41 41 LCS_GDT C 8 C 8 12 20 38 8 12 15 17 19 21 22 24 25 29 32 33 35 36 38 39 39 41 41 41 LCS_GDT T 9 T 9 12 20 38 8 12 15 17 19 21 22 24 25 29 32 33 35 36 38 39 39 41 41 41 LCS_GDT E 10 E 10 12 20 38 8 12 15 17 19 21 22 24 25 29 32 33 35 36 38 39 39 41 41 41 LCS_GDT M 11 M 11 12 20 38 8 12 15 17 19 21 22 24 25 29 32 33 35 36 38 39 39 41 41 41 LCS_GDT K 12 K 12 12 20 38 8 12 15 17 19 21 22 24 25 29 32 33 35 36 38 39 39 41 41 41 LCS_GDT K 13 K 13 12 20 38 8 12 15 17 19 21 22 24 25 29 32 33 35 36 38 39 39 41 41 41 LCS_GDT K 14 K 14 12 20 38 8 12 15 17 19 21 22 24 25 29 32 33 35 36 38 39 39 41 41 41 LCS_GDT F 15 F 15 12 20 38 4 12 15 17 19 21 22 24 25 29 32 33 35 36 38 39 39 41 41 41 LCS_GDT K 16 K 16 4 20 38 3 4 6 10 11 17 22 24 25 29 32 33 35 36 38 39 39 41 41 41 LCS_GDT N 17 N 17 5 20 38 3 6 15 17 19 21 22 24 25 29 32 33 35 36 38 39 39 41 41 41 LCS_GDT C 18 C 18 6 20 38 3 8 15 17 19 21 22 24 25 29 32 33 35 36 38 39 39 41 41 41 LCS_GDT E 19 E 19 6 20 38 3 8 15 17 19 21 22 24 25 29 32 33 35 36 38 39 39 41 41 41 LCS_GDT V 20 V 20 6 20 38 3 8 15 17 19 21 22 24 25 29 32 33 35 36 38 39 39 41 41 41 LCS_GDT R 21 R 21 6 20 38 3 8 14 17 19 21 22 24 25 29 32 33 35 36 38 39 39 41 41 41 LCS_GDT C 22 C 22 6 20 38 3 5 6 16 19 21 22 24 25 29 32 33 35 36 38 39 39 41 41 41 LCS_GDT D 23 D 23 6 20 38 3 5 10 14 18 21 22 24 25 29 32 33 35 36 38 39 39 41 41 41 LCS_GDT E 24 E 24 4 4 38 3 3 4 4 6 7 11 16 25 29 32 33 35 36 38 39 39 41 41 41 LCS_GDT S 25 S 25 4 8 38 3 4 5 5 7 9 9 14 20 28 32 33 35 36 38 39 39 41 41 41 LCS_GDT N 26 N 26 4 8 38 3 4 4 5 8 11 18 20 25 29 32 33 35 36 38 39 39 41 41 41 LCS_GDT H 27 H 27 4 8 38 3 4 5 10 11 13 15 16 19 22 27 31 34 35 38 39 39 41 41 41 LCS_GDT C 28 C 28 4 8 38 3 4 6 10 11 13 15 19 25 29 32 33 35 36 38 39 39 41 41 41 LCS_GDT V 29 V 29 4 8 38 3 4 6 10 11 13 15 18 25 29 32 33 35 36 38 39 39 41 41 41 LCS_GDT E 30 E 30 4 8 38 3 4 5 6 8 13 15 17 25 29 32 33 35 36 38 39 39 41 41 41 LCS_GDT V 31 V 31 4 8 38 1 4 6 8 11 13 18 21 25 29 32 33 35 36 38 39 39 41 41 41 LCS_GDT R 32 R 32 4 8 38 3 4 5 6 10 13 15 16 24 28 32 33 35 36 38 39 39 41 41 41 LCS_GDT C 33 C 33 3 8 38 3 3 9 15 16 21 22 24 25 29 32 33 35 36 38 39 39 41 41 41 LCS_GDT S 34 S 34 4 8 38 4 4 4 5 6 9 12 12 16 19 25 31 34 36 38 39 39 41 41 41 LCS_GDT D 35 D 35 4 8 38 4 4 4 6 10 11 15 16 17 19 24 26 31 34 35 36 39 41 41 41 LCS_GDT T 36 T 36 5 8 38 4 4 6 8 10 13 15 16 17 20 25 31 32 35 37 39 39 41 41 41 LCS_GDT K 37 K 37 5 8 38 4 4 6 10 11 13 15 16 19 23 26 31 35 36 38 39 39 41 41 41 LCS_GDT Y 38 Y 38 5 8 38 4 4 6 10 11 15 19 22 24 26 31 33 35 36 38 39 39 41 41 41 LCS_GDT T 39 T 39 5 7 38 4 11 14 17 19 21 22 24 25 29 32 33 35 36 38 39 39 41 41 41 LCS_GDT L 40 L 40 5 7 38 4 4 10 16 18 20 22 24 25 29 32 33 35 36 38 39 39 41 41 41 LCS_GDT C 41 C 41 3 6 38 2 3 4 10 11 13 15 16 23 28 32 33 35 36 38 39 39 41 41 41 LCS_AVERAGE LCS_A: 47.19 ( 16.24 33.14 92.21 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 8 12 15 17 19 21 22 24 25 29 32 33 35 36 38 39 39 41 41 41 GDT PERCENT_AT 19.51 29.27 36.59 41.46 46.34 51.22 53.66 58.54 60.98 70.73 78.05 80.49 85.37 87.80 92.68 95.12 95.12 100.00 100.00 100.00 GDT RMS_LOCAL 0.28 0.62 1.03 1.16 1.37 1.87 2.00 2.41 2.97 3.58 3.90 3.96 4.30 4.46 4.74 4.92 4.92 5.32 5.32 5.32 GDT RMS_ALL_AT 8.54 7.74 7.47 7.42 7.16 6.81 6.80 6.67 6.21 5.87 5.72 5.73 5.54 5.49 5.41 5.36 5.36 5.32 5.32 5.32 # Checking swapping # possible swapping detected: E 3 E 3 # possible swapping detected: E 10 E 10 # possible swapping detected: D 23 D 23 # possible swapping detected: E 30 E 30 # possible swapping detected: D 35 D 35 # possible swapping detected: Y 38 Y 38 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA S 1 S 1 14.090 0 0.443 0.688 16.138 0.000 0.000 15.819 LGA Q 2 Q 2 9.558 0 0.637 0.543 12.688 0.000 0.000 11.265 LGA E 3 E 3 5.265 0 0.661 1.457 7.648 11.364 5.051 5.844 LGA T 4 T 4 2.325 0 0.574 0.538 6.940 38.636 22.338 6.940 LGA R 5 R 5 1.377 0 0.044 0.771 5.581 61.818 37.521 5.383 LGA K 6 K 6 1.543 0 0.048 1.217 8.910 51.364 29.697 8.910 LGA K 7 K 7 2.433 0 0.037 0.693 5.157 38.182 20.606 5.157 LGA C 8 C 8 1.681 0 0.065 0.795 4.616 58.182 47.576 4.616 LGA T 9 T 9 0.895 0 0.063 0.099 1.155 77.727 79.481 0.996 LGA E 10 E 10 1.470 0 0.073 1.070 7.516 65.455 34.545 7.516 LGA M 11 M 11 1.354 0 0.057 1.020 3.541 65.455 50.000 3.541 LGA K 12 K 12 1.115 0 0.067 0.763 1.381 73.636 76.566 0.829 LGA K 13 K 13 1.164 0 0.166 0.934 3.376 77.727 59.798 0.809 LGA K 14 K 14 0.646 0 0.154 0.547 4.279 77.727 60.808 4.279 LGA F 15 F 15 0.638 0 0.425 0.416 5.015 64.091 34.215 4.932 LGA K 16 K 16 4.283 0 0.618 1.488 8.394 8.636 3.838 8.394 LGA N 17 N 17 1.792 0 0.173 0.541 3.598 50.909 43.182 1.203 LGA C 18 C 18 1.445 0 0.092 0.741 4.104 65.909 55.758 4.104 LGA E 19 E 19 1.687 0 0.204 1.094 7.344 58.182 30.101 7.344 LGA V 20 V 20 1.662 0 0.031 0.111 1.821 50.909 50.909 1.802 LGA R 21 R 21 1.802 0 0.222 1.480 10.923 39.545 18.017 8.257 LGA C 22 C 22 2.048 0 0.683 0.677 4.129 48.182 36.061 4.129 LGA D 23 D 23 3.220 0 0.579 0.657 7.431 11.364 5.682 6.097 LGA E 24 E 24 9.153 0 0.085 0.636 12.753 0.000 0.000 12.753 LGA S 25 S 25 9.933 0 0.556 0.733 11.455 0.000 0.000 11.455 LGA N 26 N 26 8.496 0 0.036 0.791 9.819 0.000 0.000 9.297 LGA H 27 H 27 12.364 0 0.516 1.136 19.524 0.000 0.000 19.377 LGA C 28 C 28 8.187 0 0.115 0.202 9.735 0.000 0.000 6.696 LGA V 29 V 29 7.344 0 0.146 0.967 8.025 0.000 0.000 5.275 LGA E 30 E 30 7.440 0 0.200 1.123 10.414 0.000 0.000 10.414 LGA V 31 V 31 5.881 0 0.664 1.288 7.544 0.000 0.000 7.544 LGA R 32 R 32 8.301 0 0.552 0.861 15.231 0.000 0.000 13.367 LGA C 33 C 33 4.433 0 0.515 0.541 7.209 1.364 13.939 2.854 LGA S 34 S 34 10.714 0 0.521 0.761 13.433 0.000 0.000 12.595 LGA D 35 D 35 14.731 0 0.093 1.241 16.280 0.000 0.000 13.386 LGA T 36 T 36 12.393 0 0.101 1.177 13.652 0.000 0.000 13.652 LGA K 37 K 37 10.631 0 0.143 0.944 13.454 0.000 0.000 12.357 LGA Y 38 Y 38 6.757 0 0.126 1.087 12.407 1.818 0.606 12.407 LGA T 39 T 39 2.770 0 0.061 0.165 6.104 34.091 21.818 6.104 LGA L 40 L 40 3.175 0 0.272 1.372 5.778 21.364 13.636 5.778 LGA C 41 C 41 7.953 1 0.474 0.559 10.319 0.000 0.000 5.707 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 41 164 164 100.00 335 334 99.70 41 41 SUMMARY(RMSD_GDC): 5.321 5.250 6.304 28.137 20.774 10.244 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 41 41 4.0 24 2.41 56.098 51.716 0.958 LGA_LOCAL RMSD: 2.405 Number of atoms: 24 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 6.669 Number of assigned atoms: 41 Std_ASGN_ATOMS RMSD: 5.321 Standard rmsd on all 41 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.056839 * X + -0.901033 * Y + 0.430011 * Z + -34.972443 Y_new = 0.478484 * X + 0.353436 * Y + 0.803826 * Z + -62.690884 Z_new = -0.876255 * X + 0.251442 * Y + 0.411041 * Z + 36.816231 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 1.689032 1.068034 0.548993 [DEG: 96.7744 61.1938 31.4550 ] ZXZ: 2.650373 1.147201 -1.291354 [DEG: 151.8552 65.7298 -73.9891 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0955TS387_1 REMARK 2: T0955.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS387_1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 41 41 4.0 24 2.41 51.716 5.32 REMARK ---------------------------------------------------------- MOLECULE T0955TS387_1 PFRMAT TS TARGET T0955 MODEL 1 PARENT N/A ATOM 1 CAY SER 1 -4.001 -6.370 -11.185 1.00 0.10 C ATOM 5 CY SER 1 -3.697 -5.516 -9.986 1.00 0.10 C ATOM 6 OY SER 1 -4.523 -5.367 -9.097 1.00 0.10 O ATOM 7 N SER 1 -2.514 -4.922 -10.001 1.00 0.10 N ATOM 9 CA SER 1 -2.085 -4.101 -8.941 1.00 1.00 C ATOM 11 CB SER 1 -0.739 -3.365 -9.209 1.00 0.10 C ATOM 14 OG SER 1 0.249 -4.319 -9.497 1.00 0.10 O ATOM 16 C SER 1 -1.966 -4.651 -7.503 1.00 0.10 C ATOM 17 O SER 1 -2.432 -4.039 -6.534 1.00 0.10 O ATOM 18 N GLN 2 -1.389 -5.848 -7.372 1.00 0.10 N ATOM 20 CA GLN 2 -1.487 -6.581 -6.055 1.00 1.00 C ATOM 22 CB GLN 2 -2.328 -7.835 -6.274 1.00 0.10 C ATOM 25 CG GLN 2 -2.938 -8.478 -5.011 1.00 0.10 C ATOM 28 CD GLN 2 -3.523 -9.858 -5.326 1.00 0.10 C ATOM 29 OE1 GLN 2 -4.599 -10.161 -4.897 1.00 0.10 O ATOM 30 NE2 GLN 2 -2.785 -10.748 -5.963 1.00 0.10 N ATOM 33 C GLN 2 -0.060 -7.013 -5.584 1.00 0.10 C ATOM 34 O GLN 2 0.755 -7.372 -6.415 1.00 0.10 O ATOM 35 N GLU 3 0.212 -6.863 -4.264 1.00 0.10 N ATOM 37 CA GLU 3 1.545 -7.162 -3.761 1.00 1.00 C ATOM 39 CB GLU 3 2.412 -5.833 -3.593 1.00 0.10 C ATOM 42 CG GLU 3 3.826 -6.048 -3.118 1.00 0.10 C ATOM 45 CD GLU 3 4.526 -7.087 -3.959 1.00 0.10 C ATOM 46 OE1 GLU 3 4.358 -8.287 -3.553 1.00 0.10 O ATOM 47 OE2 GLU 3 5.301 -6.810 -4.874 1.00 0.10 O ATOM 48 C GLU 3 1.248 -7.694 -2.286 1.00 0.10 C ATOM 49 O GLU 3 0.186 -7.527 -1.795 1.00 0.10 O ATOM 50 N THR 4 2.113 -8.502 -1.710 1.00 0.10 N ATOM 52 CA THR 4 1.816 -9.230 -0.559 1.00 1.00 C ATOM 54 CB THR 4 2.836 -10.277 -0.284 1.00 0.10 C ATOM 56 OG1 THR 4 2.657 -11.095 0.821 1.00 0.10 O ATOM 58 CG2 THR 4 4.251 -9.729 -0.477 1.00 0.10 C ATOM 62 C THR 4 1.555 -8.423 0.594 1.00 0.10 C ATOM 63 O THR 4 2.196 -7.411 0.911 1.00 0.10 O ATOM 64 N ARG 5 0.487 -8.662 1.400 1.00 0.10 N ATOM 66 CA ARG 5 -0.018 -7.906 2.542 1.00 1.00 C ATOM 68 CB ARG 5 -1.356 -8.473 2.958 1.00 0.10 C ATOM 71 CG ARG 5 -2.586 -8.408 2.001 1.00 0.10 C ATOM 74 CD ARG 5 -2.756 -7.233 1.170 1.00 0.10 C ATOM 77 NE ARG 5 -3.917 -7.410 0.201 1.00 0.10 N ATOM 79 CZ ARG 5 -5.210 -7.285 0.604 1.00 0.10 C ATOM 80 NH1 ARG 5 -5.579 -7.025 1.820 1.00 0.10 N ATOM 83 NH2 ARG 5 -6.091 -7.341 -0.408 1.00 0.10 N ATOM 86 C ARG 5 0.971 -7.649 3.657 1.00 0.10 C ATOM 87 O ARG 5 0.945 -6.554 4.291 1.00 0.10 O ATOM 88 N LYS 6 1.879 -8.625 3.909 1.00 0.10 N ATOM 90 CA LYS 6 3.111 -8.529 4.646 1.00 1.00 C ATOM 92 CB LYS 6 3.974 -9.736 4.547 1.00 0.10 C ATOM 95 CG LYS 6 3.387 -11.044 5.115 1.00 0.10 C ATOM 98 CD LYS 6 3.611 -11.082 6.609 1.00 0.10 C ATOM 101 CE LYS 6 3.030 -12.331 7.277 1.00 0.10 C ATOM 104 NZ LYS 6 2.915 -12.083 8.664 1.00 0.10 N ATOM 108 C LYS 6 3.981 -7.290 4.354 1.00 0.10 C ATOM 109 O LYS 6 4.483 -6.573 5.226 1.00 0.10 O ATOM 110 N LYS 7 4.351 -7.064 3.015 1.00 0.10 N ATOM 112 CA LYS 7 4.995 -5.845 2.657 1.00 1.00 C ATOM 114 CB LYS 7 5.479 -6.093 1.201 1.00 0.10 C ATOM 117 CG LYS 7 6.472 -7.191 0.971 1.00 0.10 C ATOM 120 CD LYS 7 7.038 -7.375 -0.479 1.00 0.10 C ATOM 123 CE LYS 7 8.343 -8.269 -0.435 1.00 0.10 C ATOM 126 NZ LYS 7 9.011 -8.306 -1.766 1.00 0.10 N ATOM 130 C LYS 7 4.121 -4.642 2.606 1.00 0.10 C ATOM 131 O LYS 7 4.534 -3.517 2.943 1.00 0.10 O ATOM 132 N CYS 8 2.846 -4.758 2.295 1.00 0.10 N ATOM 134 CA CYS 8 1.850 -3.625 2.385 1.00 1.00 C ATOM 136 CB CYS 8 0.402 -3.979 1.988 1.00 0.10 C ATOM 139 SG CYS 8 0.383 -4.573 0.250 1.00 0.10 S ATOM 141 C CYS 8 1.821 -2.954 3.803 1.00 0.10 C ATOM 142 O CYS 8 1.767 -1.725 3.792 1.00 0.10 O ATOM 143 N THR 9 1.947 -3.784 4.905 1.00 0.10 N ATOM 145 CA THR 9 2.294 -3.218 6.185 1.00 1.00 C ATOM 147 CB THR 9 2.361 -4.312 7.329 1.00 0.10 C ATOM 149 OG1 THR 9 1.227 -5.192 7.366 1.00 0.10 O ATOM 151 CG2 THR 9 2.415 -3.523 8.601 1.00 0.10 C ATOM 155 C THR 9 3.480 -2.250 6.214 1.00 0.10 C ATOM 156 O THR 9 3.313 -1.148 6.690 1.00 0.10 O ATOM 157 N GLU 10 4.637 -2.620 5.629 1.00 0.10 N ATOM 159 CA GLU 10 5.902 -1.824 5.742 1.00 1.00 C ATOM 161 CB GLU 10 7.082 -2.768 5.332 1.00 0.10 C ATOM 164 CG GLU 10 7.232 -3.918 6.452 1.00 0.10 C ATOM 167 CD GLU 10 7.365 -3.352 7.882 1.00 0.10 C ATOM 168 OE1 GLU 10 8.349 -2.601 8.205 1.00 0.10 O ATOM 169 OE2 GLU 10 6.380 -3.577 8.645 1.00 0.10 O ATOM 170 C GLU 10 5.854 -0.654 4.842 1.00 0.10 C ATOM 171 O GLU 10 6.399 0.416 5.050 1.00 0.10 O ATOM 172 N MET 11 5.233 -0.882 3.651 1.00 0.10 N ATOM 174 CA MET 11 5.009 0.132 2.656 1.00 1.00 C ATOM 176 CB MET 11 4.678 -0.295 1.235 1.00 0.10 C ATOM 179 CG MET 11 5.719 -1.208 0.520 1.00 0.10 C ATOM 182 SD MET 11 5.279 -1.618 -1.113 1.00 0.10 S ATOM 183 CE MET 11 5.961 -3.280 -1.106 1.00 0.10 C ATOM 187 C MET 11 4.175 1.243 3.157 1.00 0.10 C ATOM 188 O MET 11 4.372 2.405 2.866 1.00 0.10 O ATOM 189 N LYS 12 3.074 0.836 3.840 1.00 0.10 N ATOM 191 CA LYS 12 2.159 1.746 4.453 1.00 1.00 C ATOM 193 CB LYS 12 0.991 0.880 5.105 1.00 0.10 C ATOM 196 CG LYS 12 -0.159 1.756 5.715 1.00 0.10 C ATOM 199 CD LYS 12 -1.445 0.970 5.872 1.00 0.10 C ATOM 202 CE LYS 12 -1.689 0.142 7.114 1.00 0.10 C ATOM 205 NZ LYS 12 -1.629 0.814 8.412 1.00 0.10 N ATOM 209 C LYS 12 2.873 2.640 5.557 1.00 0.10 C ATOM 210 O LYS 12 2.567 3.765 5.940 1.00 0.10 O ATOM 211 N LYS 13 3.976 2.181 6.056 1.00 0.10 N ATOM 213 CA LYS 13 4.752 3.069 6.913 1.00 1.00 C ATOM 215 CB LYS 13 5.501 2.413 8.093 1.00 0.10 C ATOM 218 CG LYS 13 4.476 1.700 9.002 1.00 0.10 C ATOM 221 CD LYS 13 4.967 0.626 10.005 1.00 0.10 C ATOM 224 CE LYS 13 5.369 -0.708 9.421 1.00 0.10 C ATOM 227 NZ LYS 13 6.261 -1.377 10.379 1.00 0.10 N ATOM 231 C LYS 13 5.768 3.921 6.057 1.00 0.10 C ATOM 232 O LYS 13 6.235 4.883 6.655 1.00 0.10 O ATOM 233 N LYS 14 6.058 3.766 4.767 1.00 0.10 N ATOM 235 CA LYS 14 6.833 4.719 4.016 1.00 1.00 C ATOM 237 CB LYS 14 7.827 3.963 3.116 1.00 0.10 C ATOM 240 CG LYS 14 8.853 3.260 4.001 1.00 0.10 C ATOM 243 CD LYS 14 10.246 3.000 3.392 1.00 0.10 C ATOM 246 CE LYS 14 11.284 2.172 4.219 1.00 0.10 C ATOM 249 NZ LYS 14 11.748 3.021 5.406 1.00 0.10 N ATOM 253 C LYS 14 6.101 5.776 3.248 1.00 0.10 C ATOM 254 O LYS 14 6.640 6.728 2.649 1.00 0.10 O ATOM 255 N PHE 15 4.766 5.689 3.162 1.00 0.10 N ATOM 257 CA PHE 15 3.883 6.832 2.725 1.00 1.00 C ATOM 259 CB PHE 15 2.440 6.333 2.511 1.00 0.10 C ATOM 262 CG PHE 15 2.276 5.537 1.174 1.00 0.10 C ATOM 263 CD1 PHE 15 2.203 4.154 1.303 1.00 0.10 C ATOM 265 CE1 PHE 15 2.273 3.368 0.116 1.00 0.10 C ATOM 267 CZ PHE 15 2.308 3.935 -1.152 1.00 0.10 C ATOM 269 CD2 PHE 15 2.167 6.131 -0.092 1.00 0.10 C ATOM 271 CE2 PHE 15 2.272 5.374 -1.277 1.00 0.10 C ATOM 273 C PHE 15 3.793 7.971 3.706 1.00 0.10 C ATOM 274 O PHE 15 3.844 7.718 4.877 1.00 0.10 O ATOM 275 N LYS 16 3.878 9.238 3.183 1.00 0.10 N ATOM 277 CA LYS 16 3.726 10.494 3.856 1.00 1.00 C ATOM 279 CB LYS 16 4.917 11.488 3.705 1.00 0.10 C ATOM 282 CG LYS 16 6.196 11.175 4.512 1.00 0.10 C ATOM 285 CD LYS 16 6.984 9.881 4.223 1.00 0.10 C ATOM 288 CE LYS 16 8.046 9.639 5.265 1.00 0.10 C ATOM 291 NZ LYS 16 9.307 10.289 4.694 1.00 0.10 N ATOM 295 C LYS 16 2.418 11.057 3.586 1.00 0.10 C ATOM 296 O LYS 16 2.143 11.455 2.440 1.00 0.10 O ATOM 297 N ASN 17 1.480 11.150 4.508 1.00 0.10 N ATOM 299 CA ASN 17 0.254 11.967 4.338 1.00 1.00 C ATOM 301 CB ASN 17 0.498 13.525 4.054 1.00 0.10 C ATOM 304 CG ASN 17 1.819 13.973 4.738 1.00 0.10 C ATOM 305 OD1 ASN 17 1.899 13.993 5.953 1.00 0.10 O ATOM 306 ND2 ASN 17 2.807 14.402 3.938 1.00 0.10 N ATOM 309 C ASN 17 -0.707 11.371 3.321 1.00 0.10 C ATOM 310 O ASN 17 -1.728 11.947 2.949 1.00 0.10 O ATOM 311 N CYS 18 -0.576 10.075 2.947 1.00 0.10 N ATOM 313 CA CYS 18 -1.360 9.214 1.946 1.00 1.00 C ATOM 315 CB CYS 18 -0.391 8.696 0.779 1.00 0.10 C ATOM 318 SG CYS 18 -1.273 7.907 -0.599 1.00 0.10 S ATOM 320 C CYS 18 -1.827 8.078 2.783 1.00 0.10 C ATOM 321 O CYS 18 -1.395 7.820 3.858 1.00 0.10 O ATOM 322 N GLU 19 -2.817 7.357 2.236 1.00 0.10 N ATOM 324 CA GLU 19 -3.602 6.270 2.823 1.00 1.00 C ATOM 326 CB GLU 19 -5.153 6.497 3.151 1.00 0.10 C ATOM 329 CG GLU 19 -5.834 5.496 4.143 1.00 0.10 C ATOM 332 CD GLU 19 -5.573 5.714 5.729 1.00 0.10 C ATOM 333 OE1 GLU 19 -6.498 5.563 6.482 1.00 0.10 O ATOM 334 OE2 GLU 19 -4.415 6.057 6.013 1.00 0.10 O ATOM 335 C GLU 19 -3.611 4.999 1.913 1.00 0.10 C ATOM 336 O GLU 19 -3.787 4.982 0.671 1.00 0.10 O ATOM 337 N VAL 20 -3.339 3.895 2.571 1.00 0.10 N ATOM 339 CA VAL 20 -3.115 2.694 1.718 1.00 1.00 C ATOM 341 CB VAL 20 -1.785 1.940 2.019 1.00 0.10 C ATOM 343 CG1 VAL 20 -1.536 0.602 1.409 1.00 0.10 C ATOM 347 CG2 VAL 20 -0.675 2.875 1.658 1.00 0.10 C ATOM 351 C VAL 20 -4.280 1.707 1.996 1.00 0.10 C ATOM 352 O VAL 20 -4.431 1.234 3.151 1.00 0.10 O ATOM 353 N ARG 21 -5.102 1.370 1.033 1.00 0.10 N ATOM 355 CA ARG 21 -6.369 0.671 1.292 1.00 1.00 C ATOM 357 CB ARG 21 -7.485 1.656 1.240 1.00 0.10 C ATOM 360 CG ARG 21 -7.615 2.624 2.474 1.00 0.10 C ATOM 363 CD ARG 21 -7.755 1.961 3.821 1.00 0.10 C ATOM 366 NE ARG 21 -7.910 3.024 4.994 1.00 0.10 N ATOM 368 CZ ARG 21 -9.112 3.530 5.382 1.00 0.10 C ATOM 369 NH1 ARG 21 -9.073 4.353 6.434 1.00 0.10 N ATOM 372 NH2 ARG 21 -10.345 3.109 5.015 1.00 0.10 N ATOM 375 C ARG 21 -6.499 -0.452 0.219 1.00 0.10 C ATOM 376 O ARG 21 -7.191 -0.288 -0.741 1.00 0.10 O ATOM 377 N CYS 22 -5.790 -1.550 0.407 1.00 0.10 N ATOM 379 CA CYS 22 -5.582 -2.558 -0.613 1.00 1.00 C ATOM 381 CB CYS 22 -4.294 -3.363 -0.555 1.00 0.10 C ATOM 384 SG CYS 22 -2.815 -2.431 -0.301 1.00 0.10 S ATOM 386 C CYS 22 -6.708 -3.492 -0.868 1.00 0.10 C ATOM 387 O CYS 22 -6.790 -4.064 -1.951 1.00 0.10 O ATOM 388 N ASP 23 -7.645 -3.652 0.133 1.00 0.10 N ATOM 390 CA ASP 23 -8.851 -4.412 -0.136 1.00 1.00 C ATOM 392 CB ASP 23 -9.680 -4.711 1.170 1.00 0.10 C ATOM 395 CG ASP 23 -8.778 -5.656 1.953 1.00 0.10 C ATOM 396 OD1 ASP 23 -8.306 -6.622 1.304 1.00 0.10 O ATOM 397 OD2 ASP 23 -8.560 -5.507 3.162 1.00 0.10 O ATOM 398 C ASP 23 -9.862 -3.479 -0.976 1.00 0.10 C ATOM 399 O ASP 23 -10.572 -3.835 -1.945 1.00 0.10 O ATOM 400 N GLU 24 -10.085 -2.318 -0.384 1.00 0.10 N ATOM 402 CA GLU 24 -11.106 -1.324 -0.506 1.00 1.00 C ATOM 404 CB GLU 24 -10.952 -0.415 0.597 1.00 0.10 C ATOM 407 CG GLU 24 -11.375 -0.983 2.026 1.00 0.10 C ATOM 410 CD GLU 24 -10.800 -0.134 3.171 1.00 0.10 C ATOM 411 OE1 GLU 24 -10.270 -0.627 4.214 1.00 0.10 O ATOM 412 OE2 GLU 24 -10.890 1.167 3.009 1.00 0.10 O ATOM 413 C GLU 24 -10.987 -0.592 -1.746 1.00 0.10 C ATOM 414 O GLU 24 -12.036 -0.285 -2.320 1.00 0.10 O ATOM 415 N SER 25 -9.773 -0.396 -2.208 1.00 0.10 N ATOM 417 CA SER 25 -9.373 0.481 -3.319 1.00 1.00 C ATOM 419 CB SER 25 -8.360 1.681 -3.003 1.00 0.10 C ATOM 422 OG SER 25 -8.367 2.798 -3.842 1.00 0.10 O ATOM 424 C SER 25 -8.858 -0.140 -4.615 1.00 0.10 C ATOM 425 O SER 25 -8.044 -1.067 -4.650 1.00 0.10 O ATOM 426 N ASN 26 -9.402 0.420 -5.724 1.00 0.10 N ATOM 428 CA ASN 26 -9.193 0.064 -7.096 1.00 1.00 C ATOM 430 CB ASN 26 -10.550 0.090 -7.941 1.00 0.10 C ATOM 433 CG ASN 26 -11.737 -0.634 -7.278 1.00 0.10 C ATOM 434 OD1 ASN 26 -12.773 0.035 -7.039 1.00 0.10 O ATOM 435 ND2 ASN 26 -11.611 -1.941 -7.018 1.00 0.10 N ATOM 438 C ASN 26 -8.238 0.961 -7.878 1.00 0.10 C ATOM 439 O ASN 26 -7.755 0.579 -8.951 1.00 0.10 O ATOM 440 N HIS 27 -7.760 1.999 -7.148 1.00 0.10 N ATOM 442 CA HIS 27 -6.999 2.996 -7.851 1.00 1.00 C ATOM 444 CB HIS 27 -7.539 4.421 -7.494 1.00 0.10 C ATOM 447 ND1 HIS 27 -9.981 4.437 -7.476 1.00 0.10 N ATOM 449 CG HIS 27 -8.828 4.520 -8.235 1.00 0.10 C ATOM 450 CE1 HIS 27 -11.072 4.759 -8.302 1.00 0.10 C ATOM 452 NE2 HIS 27 -10.585 5.006 -9.488 1.00 0.10 N ATOM 453 CD2 HIS 27 -9.208 4.879 -9.464 1.00 0.10 C ATOM 455 C HIS 27 -5.584 3.009 -7.411 1.00 0.10 C ATOM 456 O HIS 27 -5.329 2.903 -6.230 1.00 0.10 O ATOM 457 N CYS 28 -4.647 3.112 -8.374 1.00 0.10 N ATOM 459 CA CYS 28 -3.227 3.062 -8.106 1.00 1.00 C ATOM 461 CB CYS 28 -2.319 2.857 -9.337 1.00 0.10 C ATOM 464 SG CYS 28 -2.435 1.220 -10.076 1.00 0.10 S ATOM 466 C CYS 28 -2.708 4.263 -7.300 1.00 0.10 C ATOM 467 O CYS 28 -3.307 5.317 -7.348 1.00 0.10 O ATOM 468 N VAL 29 -1.712 4.013 -6.441 1.00 0.10 N ATOM 470 CA VAL 29 -1.342 4.993 -5.461 1.00 1.00 C ATOM 472 CB VAL 29 -0.319 4.490 -4.307 1.00 0.10 C ATOM 474 CG1 VAL 29 -1.128 3.769 -3.291 1.00 0.10 C ATOM 478 CG2 VAL 29 0.891 3.695 -4.820 1.00 0.10 C ATOM 482 C VAL 29 -0.712 6.256 -6.011 1.00 0.10 C ATOM 483 O VAL 29 -0.124 6.286 -7.048 1.00 0.10 O ATOM 484 N GLU 30 -0.893 7.323 -5.257 1.00 0.10 N ATOM 486 CA GLU 30 0.000 8.497 -5.495 1.00 1.00 C ATOM 488 CB GLU 30 -0.555 9.779 -4.793 1.00 0.10 C ATOM 491 CG GLU 30 0.428 10.948 -4.823 1.00 0.10 C ATOM 494 CD GLU 30 0.784 11.508 -6.242 1.00 0.10 C ATOM 495 OE1 GLU 30 0.053 12.483 -6.654 1.00 0.10 O ATOM 496 OE2 GLU 30 1.604 10.965 -7.036 1.00 0.10 O ATOM 497 C GLU 30 1.426 8.197 -5.135 1.00 0.10 C ATOM 498 O GLU 30 1.758 8.226 -3.908 1.00 0.10 O ATOM 499 N VAL 31 2.242 7.833 -6.152 1.00 0.10 N ATOM 501 CA VAL 31 3.504 7.128 -5.728 1.00 1.00 C ATOM 503 CB VAL 31 3.917 6.229 -6.885 1.00 0.10 C ATOM 505 CG1 VAL 31 4.622 6.969 -8.022 1.00 0.10 C ATOM 509 CG2 VAL 31 4.845 5.174 -6.449 1.00 0.10 C ATOM 513 C VAL 31 4.562 8.106 -5.342 1.00 0.10 C ATOM 514 O VAL 31 5.411 7.781 -4.548 1.00 0.10 O ATOM 515 N ARG 32 4.447 9.390 -5.810 1.00 0.10 N ATOM 517 CA ARG 32 5.231 10.457 -5.335 1.00 1.00 C ATOM 519 CB ARG 32 4.864 11.734 -6.257 1.00 0.10 C ATOM 522 CG ARG 32 4.960 11.529 -7.733 1.00 0.10 C ATOM 525 CD ARG 32 4.534 12.663 -8.627 1.00 0.10 C ATOM 528 NE ARG 32 3.031 12.803 -8.522 1.00 0.10 N ATOM 530 CZ ARG 32 2.469 14.066 -8.652 1.00 0.10 C ATOM 531 NH1 ARG 32 3.180 14.975 -9.251 1.00 0.10 N ATOM 534 NH2 ARG 32 1.279 14.373 -8.178 1.00 0.10 N ATOM 537 C ARG 32 5.181 10.865 -3.819 1.00 0.10 C ATOM 538 O ARG 32 6.086 11.475 -3.305 1.00 0.10 O ATOM 539 N CYS 33 4.091 10.645 -3.002 1.00 0.10 N ATOM 541 CA CYS 33 4.041 10.807 -1.540 1.00 1.00 C ATOM 543 CB CYS 33 2.653 11.055 -0.938 1.00 0.10 C ATOM 546 SG CYS 33 1.915 12.616 -1.442 1.00 0.10 S ATOM 548 C CYS 33 4.731 9.754 -0.688 1.00 0.10 C ATOM 549 O CYS 33 4.290 9.356 0.356 1.00 0.10 O ATOM 550 N SER 34 5.761 9.082 -1.304 1.00 0.10 N ATOM 552 CA SER 34 6.363 7.911 -0.762 1.00 1.00 C ATOM 554 CB SER 34 5.789 6.698 -1.512 1.00 0.10 C ATOM 557 OG SER 34 6.166 5.455 -0.960 1.00 0.10 O ATOM 559 C SER 34 7.894 7.951 -0.861 1.00 0.10 C ATOM 560 O SER 34 8.478 8.241 -1.917 1.00 0.10 O ATOM 561 N ASP 35 8.515 7.541 0.312 1.00 0.10 N ATOM 563 CA ASP 35 9.850 7.329 0.304 1.00 1.00 C ATOM 565 CB ASP 35 10.508 7.151 1.716 1.00 0.10 C ATOM 568 CG ASP 35 10.461 8.389 2.555 1.00 0.10 C ATOM 569 OD1 ASP 35 9.812 9.355 2.051 1.00 0.10 O ATOM 570 OD2 ASP 35 11.106 8.370 3.621 1.00 0.10 O ATOM 571 C ASP 35 10.317 6.070 -0.471 1.00 0.10 C ATOM 572 O ASP 35 11.464 5.970 -0.794 1.00 0.10 O ATOM 573 N THR 36 9.395 5.171 -0.959 1.00 0.10 N ATOM 575 CA THR 36 9.861 3.954 -1.597 1.00 1.00 C ATOM 577 CB THR 36 9.746 2.715 -0.782 1.00 0.10 C ATOM 579 OG1 THR 36 10.078 1.622 -1.595 1.00 0.10 O ATOM 581 CG2 THR 36 8.377 2.434 -0.163 1.00 0.10 C ATOM 585 C THR 36 9.026 3.904 -2.768 1.00 0.10 C ATOM 586 O THR 36 7.764 3.907 -2.719 1.00 0.10 O ATOM 587 N LYS 37 9.717 3.881 -3.956 1.00 0.10 N ATOM 589 CA LYS 37 9.035 3.913 -5.252 1.00 1.00 C ATOM 591 CB LYS 37 9.994 4.301 -6.380 1.00 0.10 C ATOM 594 CG LYS 37 9.298 4.591 -7.729 1.00 0.10 C ATOM 597 CD LYS 37 10.230 4.796 -8.933 1.00 0.10 C ATOM 600 CE LYS 37 9.588 5.165 -10.322 1.00 0.10 C ATOM 603 NZ LYS 37 8.757 4.112 -10.945 1.00 0.10 N ATOM 607 C LYS 37 8.404 2.566 -5.582 1.00 0.10 C ATOM 608 O LYS 37 9.057 1.763 -6.131 1.00 0.10 O ATOM 609 N TYR 38 7.145 2.430 -5.289 1.00 0.10 N ATOM 611 CA TYR 38 6.472 1.075 -5.437 1.00 1.00 C ATOM 613 CB TYR 38 6.702 0.276 -4.165 1.00 0.10 C ATOM 616 CG TYR 38 6.841 -1.206 -4.527 1.00 0.10 C ATOM 617 CD1 TYR 38 8.144 -1.671 -4.614 1.00 0.10 C ATOM 619 CE1 TYR 38 8.351 -3.039 -4.735 1.00 0.10 C ATOM 621 CZ TYR 38 7.296 -3.952 -4.766 1.00 0.10 C ATOM 622 OH TYR 38 7.658 -5.322 -4.922 1.00 0.10 O ATOM 624 CD2 TYR 38 5.757 -2.163 -4.682 1.00 0.10 C ATOM 626 CE2 TYR 38 5.971 -3.554 -4.863 1.00 0.10 C ATOM 628 C TYR 38 4.891 1.150 -5.682 1.00 0.10 C ATOM 629 O TYR 38 4.167 1.864 -4.983 1.00 0.10 O ATOM 630 N THR 39 4.422 0.379 -6.677 1.00 0.10 N ATOM 632 CA THR 39 3.056 0.524 -7.160 1.00 1.00 C ATOM 634 CB THR 39 2.935 0.435 -8.661 1.00 0.10 C ATOM 636 OG1 THR 39 4.021 1.092 -9.354 1.00 0.10 O ATOM 638 CG2 THR 39 1.637 1.041 -9.193 1.00 0.10 C ATOM 642 C THR 39 2.208 -0.564 -6.603 1.00 0.10 C ATOM 643 O THR 39 2.362 -1.753 -6.726 1.00 0.10 O ATOM 644 N LEU 40 1.086 -0.029 -5.965 1.00 0.10 N ATOM 646 CA LEU 40 -0.022 -0.848 -5.564 1.00 1.00 C ATOM 648 CB LEU 40 0.267 -1.482 -4.114 1.00 0.10 C ATOM 651 CG LEU 40 0.816 -0.500 -3.009 1.00 0.10 C ATOM 653 CD1 LEU 40 0.182 -0.781 -1.626 1.00 0.10 C ATOM 657 CD2 LEU 40 2.362 -0.650 -2.826 1.00 0.10 C ATOM 661 C LEU 40 -1.287 -0.007 -5.593 1.00 0.10 C ATOM 662 O LEU 40 -1.293 1.162 -5.902 1.00 0.10 O ATOM 663 N CYS 41 -2.481 -0.577 -5.370 1.00 0.10 N ATOM 665 CA CYS 41 -3.699 0.125 -5.273 1.00 1.00 C ATOM 667 CB CYS 41 -4.850 -0.675 -5.887 1.00 0.10 C ATOM 670 SG CYS 41 -4.534 -0.978 -7.670 1.00 0.10 S ATOM 672 C CYS 41 -4.080 0.592 -3.795 1.00 0.10 C ATOM 673 O CYS 41 -3.995 -0.149 -2.847 1.00 0.10 O ATOM 674 NT CYS 41 -4.606 1.744 -3.600 1.00 0.10 N ATOM 676 CAT CYS 41 -4.736 2.485 -2.285 1.00 0.10 C TER END