####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 41 ( 335), selected 41 , name T0955TS344_1 # Molecule2: number of CA atoms 41 ( 665), selected 41 , name T0955.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS344_1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 41 1 - 41 0.98 0.98 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 41 1 - 41 0.98 0.98 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 41 1 - 41 0.98 0.98 LCS_AVERAGE: 100.00 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 41 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 1 S 1 41 41 41 3 3 3 4 20 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT Q 2 Q 2 41 41 41 10 34 39 40 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 3 E 3 41 41 41 10 34 39 40 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 4 T 4 41 41 41 19 34 39 40 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT R 5 R 5 41 41 41 20 34 39 40 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 6 K 6 41 41 41 20 34 39 40 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 7 K 7 41 41 41 20 34 39 40 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 8 C 8 41 41 41 20 34 39 40 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 9 T 9 41 41 41 20 34 39 40 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 10 E 10 41 41 41 20 34 39 40 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT M 11 M 11 41 41 41 20 34 39 40 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 12 K 12 41 41 41 20 34 39 40 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 13 K 13 41 41 41 20 34 39 40 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 14 K 14 41 41 41 15 34 39 40 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT F 15 F 15 41 41 41 20 34 39 40 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 16 K 16 41 41 41 5 27 39 40 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT N 17 N 17 41 41 41 4 31 39 40 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 18 C 18 41 41 41 4 17 39 40 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 19 E 19 41 41 41 12 34 39 40 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT V 20 V 20 41 41 41 12 34 39 40 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT R 21 R 21 41 41 41 11 34 39 40 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 22 C 22 41 41 41 7 33 39 40 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT D 23 D 23 41 41 41 4 17 39 40 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 24 E 24 41 41 41 17 34 39 40 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT S 25 S 25 41 41 41 17 34 39 40 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT N 26 N 26 41 41 41 20 34 39 40 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT H 27 H 27 41 41 41 20 34 39 40 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 28 C 28 41 41 41 4 34 39 40 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT V 29 V 29 41 41 41 20 34 39 40 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 30 E 30 41 41 41 20 34 39 40 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT V 31 V 31 41 41 41 20 34 39 40 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT R 32 R 32 41 41 41 20 34 39 40 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 33 C 33 41 41 41 17 34 39 40 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT S 34 S 34 41 41 41 11 32 39 40 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT D 35 D 35 41 41 41 20 34 39 40 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 36 T 36 41 41 41 20 34 39 40 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 37 K 37 41 41 41 20 34 39 40 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT Y 38 Y 38 41 41 41 7 34 39 40 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 39 T 39 41 41 41 14 34 39 40 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT L 40 L 40 41 41 41 20 34 39 40 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 41 C 41 41 41 41 4 34 39 40 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_AVERAGE LCS_A: 100.00 ( 100.00 100.00 100.00 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 20 34 39 40 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 GDT PERCENT_AT 48.78 82.93 95.12 97.56 97.56 97.56 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 GDT RMS_LOCAL 0.31 0.60 0.75 0.79 0.79 0.79 0.98 0.98 0.98 0.98 0.98 0.98 0.98 0.98 0.98 0.98 0.98 0.98 0.98 0.98 GDT RMS_ALL_AT 1.03 1.01 1.00 0.99 0.99 0.99 0.98 0.98 0.98 0.98 0.98 0.98 0.98 0.98 0.98 0.98 0.98 0.98 0.98 0.98 # Checking swapping # possible swapping detected: E 10 E 10 # possible swapping detected: E 19 E 19 # possible swapping detected: D 23 D 23 # possible swapping detected: E 24 E 24 # possible swapping detected: E 30 E 30 # possible swapping detected: Y 38 Y 38 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA S 1 S 1 3.713 0 0.149 0.641 5.973 7.727 6.061 5.928 LGA Q 2 Q 2 1.034 0 0.206 0.954 2.035 73.636 68.081 0.649 LGA E 3 E 3 1.010 0 0.015 1.418 6.751 77.727 43.030 6.532 LGA T 4 T 4 0.724 0 0.024 1.114 2.810 81.818 67.792 2.810 LGA R 5 R 5 0.586 0 0.020 0.221 1.758 90.909 76.364 1.758 LGA K 6 K 6 0.427 0 0.019 1.283 6.287 100.000 58.990 6.151 LGA K 7 K 7 0.244 0 0.028 0.656 2.346 100.000 72.525 2.271 LGA C 8 C 8 0.286 0 0.010 0.021 0.439 100.000 100.000 0.439 LGA T 9 T 9 0.446 0 0.020 0.105 0.949 95.455 89.610 0.711 LGA E 10 E 10 0.490 0 0.027 0.945 3.720 95.455 62.626 3.648 LGA M 11 M 11 0.328 0 0.010 0.101 0.382 100.000 100.000 0.256 LGA K 12 K 12 0.296 0 0.018 0.637 1.781 95.455 87.071 1.602 LGA K 13 K 13 0.751 0 0.040 0.914 3.067 77.727 67.677 3.067 LGA K 14 K 14 1.000 0 0.032 0.976 6.281 73.636 46.263 6.281 LGA F 15 F 15 0.587 0 0.130 0.256 2.203 81.818 72.397 1.989 LGA K 16 K 16 1.490 0 0.675 1.373 5.241 53.636 37.576 4.989 LGA N 17 N 17 1.539 0 0.304 0.559 3.334 65.909 46.818 3.334 LGA C 18 C 18 1.561 0 0.069 0.099 1.742 54.545 53.333 1.735 LGA E 19 E 19 0.881 0 0.145 0.379 1.322 82.273 80.202 0.776 LGA V 20 V 20 0.916 0 0.034 0.049 1.169 73.636 74.805 0.716 LGA R 21 R 21 0.990 0 0.035 1.180 4.734 81.818 50.083 4.659 LGA C 22 C 22 1.152 0 0.233 0.964 4.296 61.818 53.030 4.296 LGA D 23 D 23 1.550 0 0.324 1.130 3.953 46.364 39.091 2.638 LGA E 24 E 24 0.565 0 0.050 0.580 2.525 90.909 65.253 2.383 LGA S 25 S 25 0.320 0 0.078 0.673 2.562 100.000 87.879 2.562 LGA N 26 N 26 0.217 0 0.070 1.184 4.958 100.000 70.909 4.958 LGA H 27 H 27 0.370 0 0.093 0.301 1.526 95.455 82.727 1.317 LGA C 28 C 28 0.798 0 0.177 0.770 2.621 77.727 70.000 2.621 LGA V 29 V 29 0.164 0 0.057 0.077 0.571 95.455 94.805 0.361 LGA E 30 E 30 0.399 0 0.106 0.602 2.085 95.455 79.394 2.085 LGA V 31 V 31 0.151 0 0.079 0.113 0.285 100.000 100.000 0.173 LGA R 32 R 32 0.290 0 0.123 0.974 7.067 86.818 51.901 7.067 LGA C 33 C 33 0.591 0 0.534 1.023 3.949 60.909 60.606 2.084 LGA S 34 S 34 0.990 0 0.244 0.593 2.992 77.727 64.848 2.992 LGA D 35 D 35 0.752 0 0.183 0.942 4.959 90.909 55.455 4.862 LGA T 36 T 36 0.583 0 0.015 0.164 0.706 81.818 81.818 0.659 LGA K 37 K 37 0.631 0 0.037 1.135 2.427 86.364 67.071 2.427 LGA Y 38 Y 38 0.945 0 0.087 1.235 6.673 95.455 50.909 6.673 LGA T 39 T 39 0.694 0 0.085 0.102 1.799 74.091 68.312 1.306 LGA L 40 L 40 0.222 0 0.062 0.990 3.667 95.455 67.500 3.667 LGA C 41 C 41 0.959 0 0.101 0.141 1.490 81.818 74.805 1.490 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 41 164 164 100.00 335 335 100.00 41 41 SUMMARY(RMSD_GDC): 0.981 1.150 2.048 81.896 67.015 39.202 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 41 41 4.0 41 0.98 95.122 97.807 3.792 LGA_LOCAL RMSD: 0.981 Number of atoms: 41 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 0.981 Number of assigned atoms: 41 Std_ASGN_ATOMS RMSD: 0.981 Standard rmsd on all 41 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.512700 * X + 0.159485 * Y + -0.843625 * Z + -3.134968 Y_new = -0.706791 * X + 0.636243 * Y + -0.309261 * Z + -11.202079 Z_new = 0.487428 * X + 0.754824 * Y + 0.438924 * Z + -1.402974 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -0.943232 -0.509142 1.044098 [DEG: -54.0432 -29.1717 59.8224 ] ZXZ: -1.219423 1.116396 0.573382 [DEG: -69.8678 63.9648 32.8524 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0955TS344_1 REMARK 2: T0955.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS344_1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 41 41 4.0 41 0.98 97.807 0.98 REMARK ---------------------------------------------------------- MOLECULE T0955TS344_1 PFRMAT TS TARGET T0955 MODEL 1 PARENT N/A ATOM 1 N SER 1 -3.135 -11.202 -1.403 1.00 1.29 N ATOM 2 CA SER 1 -2.387 -12.233 -0.692 1.00 1.29 C ATOM 3 C SER 1 -1.878 -11.719 0.648 1.00 1.29 C ATOM 4 O SER 1 -1.974 -10.527 0.944 1.00 1.29 O ATOM 5 CB SER 1 -1.222 -12.708 -1.537 1.00 1.29 C ATOM 6 OG SER 1 -0.232 -11.720 -1.628 1.00 1.29 O ATOM 14 N GLN 2 -1.338 -12.624 1.457 1.00 0.79 N ATOM 15 CA GLN 2 -0.723 -12.249 2.724 1.00 0.79 C ATOM 16 C GLN 2 0.550 -11.441 2.501 1.00 0.79 C ATOM 17 O GLN 2 0.873 -10.545 3.282 1.00 0.79 O ATOM 18 CB GLN 2 -0.412 -13.494 3.558 1.00 0.79 C ATOM 19 CG GLN 2 0.130 -13.194 4.947 1.00 0.79 C ATOM 20 CD GLN 2 -0.854 -12.411 5.794 1.00 0.79 C ATOM 21 OE1 GLN 2 -2.051 -12.712 5.820 1.00 0.79 O ATOM 22 NE2 GLN 2 -0.356 -11.399 6.494 1.00 0.79 N ATOM 31 N GLU 3 1.269 -11.763 1.431 1.00 0.75 N ATOM 32 CA GLU 3 2.456 -11.007 1.051 1.00 0.75 C ATOM 33 C GLU 3 2.087 -9.610 0.567 1.00 0.75 C ATOM 34 O GLU 3 2.840 -8.656 0.762 1.00 0.75 O ATOM 35 CB GLU 3 3.231 -11.746 -0.041 1.00 0.75 C ATOM 36 CG GLU 3 3.858 -13.058 0.410 1.00 0.75 C ATOM 37 CD GLU 3 4.855 -12.877 1.520 1.00 0.75 C ATOM 38 OE1 GLU 3 5.704 -12.025 1.399 1.00 0.75 O ATOM 39 OE2 GLU 3 4.771 -13.591 2.492 1.00 0.75 O ATOM 46 N THR 4 0.923 -9.495 -0.064 1.00 0.61 N ATOM 47 CA THR 4 0.376 -8.196 -0.433 1.00 0.61 C ATOM 48 C THR 4 0.081 -7.351 0.800 1.00 0.61 C ATOM 49 O THR 4 0.338 -6.148 0.816 1.00 0.61 O ATOM 50 CB THR 4 -0.906 -8.351 -1.272 1.00 0.61 C ATOM 51 OG1 THR 4 -0.614 -9.097 -2.461 1.00 0.61 O ATOM 52 CG2 THR 4 -1.461 -6.989 -1.656 1.00 0.61 C ATOM 60 N ARG 5 -0.460 -7.991 1.832 1.00 0.44 N ATOM 61 CA ARG 5 -0.705 -7.321 3.104 1.00 0.44 C ATOM 62 C ARG 5 0.595 -6.825 3.726 1.00 0.44 C ATOM 63 O ARG 5 0.643 -5.738 4.302 1.00 0.44 O ATOM 64 CB ARG 5 -1.402 -8.260 4.077 1.00 0.44 C ATOM 65 CG ARG 5 -2.843 -8.594 3.721 1.00 0.44 C ATOM 66 CD ARG 5 -3.404 -9.634 4.624 1.00 0.44 C ATOM 67 NE ARG 5 -4.790 -9.936 4.305 1.00 0.44 N ATOM 68 CZ ARG 5 -5.463 -11.009 4.764 1.00 0.44 C ATOM 69 NH1 ARG 5 -4.865 -11.871 5.556 1.00 0.44 N ATOM 70 NH2 ARG 5 -6.724 -11.196 4.416 1.00 0.44 N ATOM 84 N LYS 6 1.646 -7.628 3.605 1.00 0.25 N ATOM 85 CA LYS 6 2.977 -7.218 4.040 1.00 0.25 C ATOM 86 C LYS 6 3.469 -6.014 3.248 1.00 0.25 C ATOM 87 O LYS 6 4.010 -5.065 3.817 1.00 0.25 O ATOM 88 CB LYS 6 3.965 -8.377 3.903 1.00 0.25 C ATOM 89 CG LYS 6 3.728 -9.524 4.878 1.00 0.25 C ATOM 90 CD LYS 6 4.704 -10.666 4.634 1.00 0.25 C ATOM 91 CE LYS 6 4.385 -11.864 5.518 1.00 0.25 C ATOM 92 NZ LYS 6 5.281 -13.018 5.232 1.00 0.25 N ATOM 106 N LYS 7 3.279 -6.058 1.934 1.00 0.28 N ATOM 107 CA LYS 7 3.660 -4.950 1.067 1.00 0.28 C ATOM 108 C LYS 7 2.897 -3.682 1.426 1.00 0.28 C ATOM 109 O LYS 7 3.452 -2.583 1.400 1.00 0.28 O ATOM 110 CB LYS 7 3.423 -5.311 -0.400 1.00 0.28 C ATOM 111 CG LYS 7 4.401 -6.332 -0.964 1.00 0.28 C ATOM 112 CD LYS 7 4.014 -6.749 -2.375 1.00 0.28 C ATOM 113 CE LYS 7 4.997 -7.762 -2.943 1.00 0.28 C ATOM 114 NZ LYS 7 4.523 -8.334 -4.232 1.00 0.28 N ATOM 128 N CYS 8 1.620 -3.840 1.759 1.00 0.33 N ATOM 129 CA CYS 8 0.796 -2.718 2.190 1.00 0.33 C ATOM 130 C CYS 8 1.399 -2.027 3.406 1.00 0.33 C ATOM 131 O CYS 8 1.545 -0.805 3.429 1.00 0.33 O ATOM 132 CB CYS 8 -0.620 -3.187 2.527 1.00 0.33 C ATOM 133 SG CYS 8 -1.736 -1.859 3.036 1.00 0.33 S ATOM 139 N THR 9 1.748 -2.816 4.417 1.00 0.41 N ATOM 140 CA THR 9 2.382 -2.287 5.619 1.00 0.41 C ATOM 141 C THR 9 3.676 -1.558 5.283 1.00 0.41 C ATOM 142 O THR 9 3.962 -0.495 5.836 1.00 0.41 O ATOM 143 CB THR 9 2.669 -3.409 6.634 1.00 0.41 C ATOM 144 OG1 THR 9 1.437 -4.025 7.031 1.00 0.41 O ATOM 145 CG2 THR 9 3.371 -2.850 7.862 1.00 0.41 C ATOM 153 N GLU 10 4.456 -2.134 4.375 1.00 0.44 N ATOM 154 CA GLU 10 5.712 -1.529 3.949 1.00 0.44 C ATOM 155 C GLU 10 5.476 -0.174 3.295 1.00 0.44 C ATOM 156 O GLU 10 6.244 0.767 3.499 1.00 0.44 O ATOM 157 CB GLU 10 6.447 -2.455 2.977 1.00 0.44 C ATOM 158 CG GLU 10 7.031 -3.705 3.619 1.00 0.44 C ATOM 159 CD GLU 10 8.123 -3.399 4.607 1.00 0.44 C ATOM 160 OE1 GLU 10 9.002 -2.639 4.277 1.00 0.44 O ATOM 161 OE2 GLU 10 8.077 -3.926 5.694 1.00 0.44 O ATOM 168 N MET 11 4.410 -0.079 2.508 1.00 0.44 N ATOM 169 CA MET 11 4.072 1.161 1.821 1.00 0.44 C ATOM 170 C MET 11 3.531 2.200 2.795 1.00 0.44 C ATOM 171 O MET 11 3.680 3.403 2.579 1.00 0.44 O ATOM 172 CB MET 11 3.057 0.891 0.712 1.00 0.44 C ATOM 173 CG MET 11 3.601 0.084 -0.457 1.00 0.44 C ATOM 174 SD MET 11 4.996 0.891 -1.269 1.00 0.44 S ATOM 175 CE MET 11 6.373 0.078 -0.463 1.00 0.44 C ATOM 185 N LYS 12 2.903 1.730 3.867 1.00 0.43 N ATOM 186 CA LYS 12 2.479 2.605 4.952 1.00 0.43 C ATOM 187 C LYS 12 3.677 3.207 5.676 1.00 0.43 C ATOM 188 O LYS 12 3.633 4.351 6.124 1.00 0.43 O ATOM 189 CB LYS 12 1.596 1.843 5.940 1.00 0.43 C ATOM 190 CG LYS 12 0.202 1.520 5.419 1.00 0.43 C ATOM 191 CD LYS 12 -0.611 0.752 6.451 1.00 0.43 C ATOM 192 CE LYS 12 -2.030 0.501 5.964 1.00 0.43 C ATOM 193 NZ LYS 12 -2.830 -0.267 6.956 1.00 0.43 N ATOM 207 N LYS 13 4.747 2.426 5.787 1.00 0.52 N ATOM 208 CA LYS 13 5.981 2.901 6.400 1.00 0.52 C ATOM 209 C LYS 13 6.754 3.809 5.452 1.00 0.52 C ATOM 210 O LYS 13 7.337 4.808 5.872 1.00 0.52 O ATOM 211 CB LYS 13 6.855 1.721 6.829 1.00 0.52 C ATOM 212 CG LYS 13 6.299 0.918 7.997 1.00 0.52 C ATOM 213 CD LYS 13 7.301 -0.120 8.480 1.00 0.52 C ATOM 214 CE LYS 13 7.468 -1.243 7.468 1.00 0.52 C ATOM 215 NZ LYS 13 8.392 -2.302 7.958 1.00 0.52 N ATOM 229 N LYS 14 6.755 3.455 4.172 1.00 0.77 N ATOM 230 CA LYS 14 7.453 4.240 3.161 1.00 0.77 C ATOM 231 C LYS 14 6.711 5.535 2.860 1.00 0.77 C ATOM 232 O LYS 14 7.327 6.587 2.681 1.00 0.77 O ATOM 233 CB LYS 14 7.630 3.425 1.879 1.00 0.77 C ATOM 234 CG LYS 14 8.419 4.134 0.786 1.00 0.77 C ATOM 235 CD LYS 14 8.715 3.200 -0.378 1.00 0.77 C ATOM 236 CE LYS 14 9.530 3.899 -1.456 1.00 0.77 C ATOM 237 NZ LYS 14 9.896 2.975 -2.564 1.00 0.77 N ATOM 251 N PHE 15 5.387 5.454 2.805 1.00 0.64 N ATOM 252 CA PHE 15 4.559 6.618 2.511 1.00 0.64 C ATOM 253 C PHE 15 3.675 6.981 3.697 1.00 0.64 C ATOM 254 O PHE 15 2.485 6.668 3.715 1.00 0.64 O ATOM 255 CB PHE 15 3.688 6.356 1.281 1.00 0.64 C ATOM 256 CG PHE 15 4.471 6.064 0.033 1.00 0.64 C ATOM 257 CD1 PHE 15 4.687 4.757 -0.377 1.00 0.64 C ATOM 258 CD2 PHE 15 4.996 7.094 -0.732 1.00 0.64 C ATOM 259 CE1 PHE 15 5.409 4.486 -1.524 1.00 0.64 C ATOM 260 CE2 PHE 15 5.716 6.828 -1.880 1.00 0.64 C ATOM 261 CZ PHE 15 5.924 5.521 -2.276 1.00 0.64 C ATOM 271 N LYS 16 4.264 7.643 4.687 1.00 1.13 N ATOM 272 CA LYS 16 3.534 8.039 5.885 1.00 1.13 C ATOM 273 C LYS 16 2.660 9.258 5.619 1.00 1.13 C ATOM 274 O LYS 16 2.959 10.069 4.743 1.00 1.13 O ATOM 275 CB LYS 16 4.504 8.327 7.033 1.00 1.13 C ATOM 276 CG LYS 16 5.272 7.109 7.528 1.00 1.13 C ATOM 277 CD LYS 16 6.194 7.470 8.683 1.00 1.13 C ATOM 278 CE LYS 16 6.967 6.255 9.176 1.00 1.13 C ATOM 279 NZ LYS 16 7.888 6.598 10.294 1.00 1.13 N ATOM 293 N ASN 17 1.577 9.380 6.379 1.00 1.03 N ATOM 294 CA ASN 17 0.607 10.447 6.165 1.00 1.03 C ATOM 295 C ASN 17 -0.030 10.343 4.785 1.00 1.03 C ATOM 296 O ASN 17 -0.363 11.355 4.167 1.00 1.03 O ATOM 297 CB ASN 17 1.256 11.806 6.353 1.00 1.03 C ATOM 298 CG ASN 17 1.796 12.001 7.742 1.00 1.03 C ATOM 299 OD1 ASN 17 1.172 11.591 8.727 1.00 1.03 O ATOM 300 ND2 ASN 17 2.946 12.620 7.840 1.00 1.03 N ATOM 307 N CYS 18 -0.195 9.115 4.306 1.00 0.68 N ATOM 308 CA CYS 18 -0.823 8.875 3.013 1.00 0.68 C ATOM 309 C CYS 18 -1.900 7.802 3.114 1.00 0.68 C ATOM 310 O CYS 18 -2.079 7.186 4.165 1.00 0.68 O ATOM 311 CB CYS 18 0.219 8.448 1.979 1.00 0.68 C ATOM 312 SG CYS 18 1.539 9.658 1.719 1.00 0.68 S ATOM 318 N GLU 19 -2.617 7.584 2.017 1.00 0.30 N ATOM 319 CA GLU 19 -3.622 6.529 1.955 1.00 0.30 C ATOM 320 C GLU 19 -3.087 5.300 1.233 1.00 0.30 C ATOM 321 O GLU 19 -2.778 5.354 0.042 1.00 0.30 O ATOM 322 CB GLU 19 -4.884 7.036 1.254 1.00 0.30 C ATOM 323 CG GLU 19 -6.004 6.010 1.157 1.00 0.30 C ATOM 324 CD GLU 19 -7.237 6.552 0.490 1.00 0.30 C ATOM 325 OE1 GLU 19 -7.277 7.729 0.224 1.00 0.30 O ATOM 326 OE2 GLU 19 -8.141 5.786 0.246 1.00 0.30 O ATOM 333 N VAL 20 -2.979 4.193 1.960 1.00 0.33 N ATOM 334 CA VAL 20 -2.455 2.954 1.395 1.00 0.33 C ATOM 335 C VAL 20 -3.500 1.847 1.436 1.00 0.33 C ATOM 336 O VAL 20 -3.991 1.482 2.506 1.00 0.33 O ATOM 337 CB VAL 20 -1.202 2.501 2.167 1.00 0.33 C ATOM 338 CG1 VAL 20 -0.653 1.209 1.581 1.00 0.33 C ATOM 339 CG2 VAL 20 -0.149 3.599 2.134 1.00 0.33 C ATOM 349 N ARG 21 -3.836 1.313 0.267 1.00 0.49 N ATOM 350 CA ARG 21 -4.899 0.320 0.154 1.00 0.49 C ATOM 351 C ARG 21 -4.333 -1.057 -0.166 1.00 0.49 C ATOM 352 O ARG 21 -3.441 -1.193 -1.004 1.00 0.49 O ATOM 353 CB ARG 21 -5.894 0.721 -0.924 1.00 0.49 C ATOM 354 CG ARG 21 -6.603 2.043 -0.682 1.00 0.49 C ATOM 355 CD ARG 21 -7.388 2.472 -1.869 1.00 0.49 C ATOM 356 NE ARG 21 -8.066 3.738 -1.640 1.00 0.49 N ATOM 357 CZ ARG 21 -8.718 4.438 -2.590 1.00 0.49 C ATOM 358 NH1 ARG 21 -8.768 3.984 -3.823 1.00 0.49 N ATOM 359 NH2 ARG 21 -9.304 5.581 -2.281 1.00 0.49 N ATOM 373 N CYS 22 -4.856 -2.076 0.505 1.00 0.59 N ATOM 374 CA CYS 22 -4.471 -3.456 0.227 1.00 0.59 C ATOM 375 C CYS 22 -5.504 -4.150 -0.650 1.00 0.59 C ATOM 376 O CYS 22 -6.521 -4.641 -0.160 1.00 0.59 O ATOM 377 CB CYS 22 -4.306 -4.241 1.529 1.00 0.59 C ATOM 378 SG CYS 22 -3.772 -5.953 1.296 1.00 0.59 S ATOM 384 N ASP 23 -5.238 -4.188 -1.952 1.00 0.53 N ATOM 385 CA ASP 23 -6.163 -4.788 -2.905 1.00 0.53 C ATOM 386 C ASP 23 -5.928 -6.287 -3.032 1.00 0.53 C ATOM 387 O ASP 23 -5.026 -6.726 -3.747 1.00 0.53 O ATOM 388 CB ASP 23 -6.023 -4.125 -4.278 1.00 0.53 C ATOM 389 CG ASP 23 -7.004 -4.676 -5.305 1.00 0.53 C ATOM 390 OD1 ASP 23 -7.548 -5.730 -5.073 1.00 0.53 O ATOM 391 OD2 ASP 23 -7.197 -4.039 -6.312 1.00 0.53 O ATOM 396 N GLU 24 -6.744 -7.071 -2.335 1.00 0.43 N ATOM 397 CA GLU 24 -6.551 -8.515 -2.271 1.00 0.43 C ATOM 398 C GLU 24 -7.093 -9.199 -3.519 1.00 0.43 C ATOM 399 O GLU 24 -6.730 -10.335 -3.824 1.00 0.43 O ATOM 400 CB GLU 24 -7.232 -9.088 -1.026 1.00 0.43 C ATOM 401 CG GLU 24 -6.614 -8.641 0.291 1.00 0.43 C ATOM 402 CD GLU 24 -7.306 -9.227 1.490 1.00 0.43 C ATOM 403 OE1 GLU 24 -8.333 -9.840 1.320 1.00 0.43 O ATOM 404 OE2 GLU 24 -6.807 -9.063 2.579 1.00 0.43 O ATOM 411 N SER 25 -7.965 -8.500 -4.239 1.00 0.77 N ATOM 412 CA SER 25 -8.587 -9.053 -5.436 1.00 0.77 C ATOM 413 C SER 25 -7.642 -8.988 -6.629 1.00 0.77 C ATOM 414 O SER 25 -7.700 -9.828 -7.526 1.00 0.77 O ATOM 415 CB SER 25 -9.867 -8.304 -5.753 1.00 0.77 C ATOM 416 OG SER 25 -9.593 -6.992 -6.159 1.00 0.77 O ATOM 422 N ASN 26 -6.772 -7.983 -6.633 1.00 0.66 N ATOM 423 CA ASN 26 -5.743 -7.866 -7.660 1.00 0.66 C ATOM 424 C ASN 26 -4.359 -8.138 -7.085 1.00 0.66 C ATOM 425 O ASN 26 -3.372 -8.196 -7.819 1.00 0.66 O ATOM 426 CB ASN 26 -5.791 -6.495 -8.309 1.00 0.66 C ATOM 427 CG ASN 26 -7.035 -6.287 -9.127 1.00 0.66 C ATOM 428 OD1 ASN 26 -7.257 -6.977 -10.129 1.00 0.66 O ATOM 429 ND2 ASN 26 -7.851 -5.348 -8.720 1.00 0.66 N ATOM 436 N HIS 27 -4.292 -8.306 -5.769 1.00 0.49 N ATOM 437 CA HIS 27 -3.037 -8.629 -5.100 1.00 0.49 C ATOM 438 C HIS 27 -2.007 -7.526 -5.302 1.00 0.49 C ATOM 439 O HIS 27 -0.860 -7.792 -5.662 1.00 0.49 O ATOM 440 CB HIS 27 -2.478 -9.959 -5.614 1.00 0.49 C ATOM 441 CG HIS 27 -3.425 -11.109 -5.462 1.00 0.49 C ATOM 442 ND1 HIS 27 -3.724 -11.670 -4.238 1.00 0.49 N ATOM 443 CD2 HIS 27 -4.138 -11.804 -6.379 1.00 0.49 C ATOM 444 CE1 HIS 27 -4.581 -12.660 -4.408 1.00 0.49 C ATOM 445 NE2 HIS 27 -4.848 -12.762 -5.699 1.00 0.49 N ATOM 453 N CYS 28 -2.420 -6.285 -5.065 1.00 0.53 N ATOM 454 CA CYS 28 -1.538 -5.138 -5.235 1.00 0.53 C ATOM 455 C CYS 28 -1.837 -4.056 -4.206 1.00 0.53 C ATOM 456 O CYS 28 -2.830 -4.132 -3.482 1.00 0.53 O ATOM 457 CB CYS 28 -1.680 -4.552 -6.639 1.00 0.53 C ATOM 458 SG CYS 28 -3.312 -3.850 -6.985 1.00 0.53 S ATOM 464 N VAL 29 -0.973 -3.048 -4.145 1.00 0.38 N ATOM 465 CA VAL 29 -1.120 -1.969 -3.175 1.00 0.38 C ATOM 466 C VAL 29 -1.278 -0.622 -3.868 1.00 0.38 C ATOM 467 O VAL 29 -0.473 -0.255 -4.724 1.00 0.38 O ATOM 468 CB VAL 29 0.103 -1.921 -2.240 1.00 0.38 C ATOM 469 CG1 VAL 29 -0.030 -0.775 -1.248 1.00 0.38 C ATOM 470 CG2 VAL 29 0.251 -3.249 -1.514 1.00 0.38 C ATOM 480 N GLU 30 -2.321 0.111 -3.493 1.00 0.42 N ATOM 481 CA GLU 30 -2.571 1.432 -4.059 1.00 0.42 C ATOM 482 C GLU 30 -2.234 2.532 -3.059 1.00 0.42 C ATOM 483 O GLU 30 -2.793 2.579 -1.963 1.00 0.42 O ATOM 484 CB GLU 30 -4.031 1.558 -4.497 1.00 0.42 C ATOM 485 CG GLU 30 -4.384 2.893 -5.138 1.00 0.42 C ATOM 486 CD GLU 30 -5.839 3.004 -5.497 1.00 0.42 C ATOM 487 OE1 GLU 30 -6.597 2.154 -5.094 1.00 0.42 O ATOM 488 OE2 GLU 30 -6.194 3.940 -6.173 1.00 0.42 O ATOM 495 N VAL 31 -1.318 3.413 -3.442 1.00 0.25 N ATOM 496 CA VAL 31 -0.877 4.491 -2.564 1.00 0.25 C ATOM 497 C VAL 31 -1.246 5.854 -3.138 1.00 0.25 C ATOM 498 O VAL 31 -0.867 6.190 -4.260 1.00 0.25 O ATOM 499 CB VAL 31 0.648 4.421 -2.356 1.00 0.25 C ATOM 500 CG1 VAL 31 1.117 5.566 -1.470 1.00 0.25 C ATOM 501 CG2 VAL 31 1.025 3.078 -1.747 1.00 0.25 C ATOM 511 N ARG 32 -1.988 6.635 -2.361 1.00 0.51 N ATOM 512 CA ARG 32 -2.339 7.995 -2.753 1.00 0.51 C ATOM 513 C ARG 32 -1.545 9.020 -1.952 1.00 0.51 C ATOM 514 O ARG 32 -1.676 9.105 -0.731 1.00 0.51 O ATOM 515 CB ARG 32 -3.827 8.243 -2.555 1.00 0.51 C ATOM 516 CG ARG 32 -4.302 9.631 -2.952 1.00 0.51 C ATOM 517 CD ARG 32 -5.777 9.764 -2.827 1.00 0.51 C ATOM 518 NE ARG 32 -6.216 9.643 -1.446 1.00 0.51 N ATOM 519 CZ ARG 32 -6.274 10.666 -0.569 1.00 0.51 C ATOM 520 NH1 ARG 32 -5.917 11.874 -0.945 1.00 0.51 N ATOM 521 NH2 ARG 32 -6.688 10.454 0.667 1.00 0.51 N ATOM 535 N CYS 33 -0.721 9.797 -2.648 1.00 0.70 N ATOM 536 CA CYS 33 0.046 10.862 -2.013 1.00 0.70 C ATOM 537 C CYS 33 -0.052 12.158 -2.806 1.00 0.70 C ATOM 538 O CYS 33 0.562 12.300 -3.863 1.00 0.70 O ATOM 539 CB CYS 33 1.516 10.461 -1.881 1.00 0.70 C ATOM 540 SG CYS 33 2.555 11.714 -1.092 1.00 0.70 S ATOM 546 N SER 34 -0.829 13.105 -2.288 1.00 1.22 N ATOM 547 CA SER 34 -1.148 14.322 -3.025 1.00 1.22 C ATOM 548 C SER 34 -1.726 13.999 -4.397 1.00 1.22 C ATOM 549 O SER 34 -2.785 13.380 -4.505 1.00 1.22 O ATOM 550 CB SER 34 0.093 15.179 -3.179 1.00 1.22 C ATOM 551 OG SER 34 -0.225 16.431 -3.723 1.00 1.22 O ATOM 557 N ASP 35 -1.025 14.422 -5.444 1.00 1.84 N ATOM 558 CA ASP 35 -1.468 14.178 -6.810 1.00 1.84 C ATOM 559 C ASP 35 -0.745 12.980 -7.416 1.00 1.84 C ATOM 560 O ASP 35 -0.912 12.677 -8.599 1.00 1.84 O ATOM 561 CB ASP 35 -1.234 15.416 -7.680 1.00 1.84 C ATOM 562 CG ASP 35 -2.095 16.602 -7.265 1.00 1.84 C ATOM 563 OD1 ASP 35 -3.154 16.382 -6.728 1.00 1.84 O ATOM 564 OD2 ASP 35 -1.684 17.715 -7.493 1.00 1.84 O ATOM 569 N THR 36 0.055 12.303 -6.601 1.00 0.82 N ATOM 570 CA THR 36 0.830 11.159 -7.064 1.00 0.82 C ATOM 571 C THR 36 0.127 9.848 -6.736 1.00 0.82 C ATOM 572 O THR 36 -0.133 9.547 -5.572 1.00 0.82 O ATOM 573 CB THR 36 2.240 11.158 -6.446 1.00 0.82 C ATOM 574 OG1 THR 36 2.943 12.340 -6.852 1.00 0.82 O ATOM 575 CG2 THR 36 3.019 9.931 -6.896 1.00 0.82 C ATOM 583 N LYS 37 -0.178 9.071 -7.771 1.00 0.72 N ATOM 584 CA LYS 37 -0.741 7.739 -7.588 1.00 0.72 C ATOM 585 C LYS 37 0.307 6.661 -7.831 1.00 0.72 C ATOM 586 O LYS 37 0.831 6.529 -8.937 1.00 0.72 O ATOM 587 CB LYS 37 -1.936 7.530 -8.520 1.00 0.72 C ATOM 588 CG LYS 37 -2.628 6.183 -8.363 1.00 0.72 C ATOM 589 CD LYS 37 -3.837 6.072 -9.280 1.00 0.72 C ATOM 590 CE LYS 37 -4.521 4.721 -9.134 1.00 0.72 C ATOM 591 NZ LYS 37 -5.741 4.621 -9.981 1.00 0.72 N ATOM 605 N TYR 38 0.608 5.890 -6.791 1.00 0.41 N ATOM 606 CA TYR 38 1.631 4.855 -6.875 1.00 0.41 C ATOM 607 C TYR 38 1.025 3.467 -6.714 1.00 0.41 C ATOM 608 O TYR 38 0.247 3.221 -5.792 1.00 0.41 O ATOM 609 CB TYR 38 2.714 5.086 -5.819 1.00 0.41 C ATOM 610 CG TYR 38 3.755 3.991 -5.763 1.00 0.41 C ATOM 611 CD1 TYR 38 4.743 3.923 -6.735 1.00 0.41 C ATOM 612 CD2 TYR 38 3.723 3.054 -4.740 1.00 0.41 C ATOM 613 CE1 TYR 38 5.695 2.923 -6.684 1.00 0.41 C ATOM 614 CE2 TYR 38 4.674 2.054 -4.690 1.00 0.41 C ATOM 615 CZ TYR 38 5.656 1.986 -5.656 1.00 0.41 C ATOM 616 OH TYR 38 6.604 0.990 -5.605 1.00 0.41 O ATOM 626 N THR 39 1.385 2.562 -7.617 1.00 0.52 N ATOM 627 CA THR 39 0.916 1.182 -7.549 1.00 0.52 C ATOM 628 C THR 39 2.076 0.216 -7.349 1.00 0.52 C ATOM 629 O THR 39 3.059 0.249 -8.089 1.00 0.52 O ATOM 630 CB THR 39 0.136 0.798 -8.820 1.00 0.52 C ATOM 631 OG1 THR 39 -1.008 1.650 -8.958 1.00 0.52 O ATOM 632 CG2 THR 39 -0.322 -0.651 -8.747 1.00 0.52 C ATOM 640 N LEU 40 1.954 -0.647 -6.345 1.00 0.41 N ATOM 641 CA LEU 40 2.964 -1.666 -6.085 1.00 0.41 C ATOM 642 C LEU 40 2.423 -3.061 -6.367 1.00 0.41 C ATOM 643 O LEU 40 1.404 -3.468 -5.807 1.00 0.41 O ATOM 644 CB LEU 40 3.440 -1.580 -4.629 1.00 0.41 C ATOM 645 CG LEU 40 4.433 -2.664 -4.190 1.00 0.41 C ATOM 646 CD1 LEU 40 5.733 -2.509 -4.968 1.00 0.41 C ATOM 647 CD2 LEU 40 4.677 -2.552 -2.692 1.00 0.41 C ATOM 659 N CYS 41 3.110 -3.792 -7.238 1.00 0.55 N ATOM 660 CA CYS 41 2.727 -5.161 -7.561 1.00 0.55 C ATOM 661 C CYS 41 3.770 -6.157 -7.070 1.00 0.55 C ATOM 662 O CYS 41 3.465 -7.005 -6.278 1.00 0.55 O ATOM 663 OXT CYS 41 4.898 -6.092 -7.475 1.00 0.55 O ATOM 664 CB CYS 41 2.542 -5.327 -9.070 1.00 0.55 C ATOM 665 SG CYS 41 1.234 -4.293 -9.771 1.00 0.55 S TER END