####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 41 ( 335), selected 41 , name T0955TS329_1 # Molecule2: number of CA atoms 41 ( 665), selected 41 , name T0955.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS329_1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 41 1 - 41 1.64 1.64 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 41 1 - 41 1.64 1.64 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 25 17 - 41 0.93 1.89 LCS_AVERAGE: 55.09 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 41 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 1 S 1 16 41 41 3 3 3 17 22 30 36 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT Q 2 Q 2 19 41 41 7 15 19 24 37 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 3 E 3 19 41 41 7 15 22 30 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 4 T 4 19 41 41 8 15 24 34 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT R 5 R 5 19 41 41 8 15 28 35 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 6 K 6 19 41 41 8 19 30 35 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 7 K 7 19 41 41 7 19 30 35 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 8 C 8 19 41 41 9 19 30 35 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 9 T 9 19 41 41 7 19 30 35 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 10 E 10 19 41 41 8 18 30 35 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT M 11 M 11 19 41 41 8 18 30 35 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 12 K 12 19 41 41 8 18 30 35 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 13 K 13 19 41 41 8 17 30 35 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 14 K 14 19 41 41 8 15 26 35 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT F 15 F 15 19 41 41 6 15 30 35 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 16 K 16 19 41 41 4 15 21 34 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT N 17 N 17 25 41 41 9 19 30 35 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 18 C 18 25 41 41 6 19 30 35 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 19 E 19 25 41 41 9 19 30 35 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT V 20 V 20 25 41 41 6 19 30 35 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT R 21 R 21 25 41 41 6 19 30 35 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 22 C 22 25 41 41 4 19 30 35 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT D 23 D 23 25 41 41 6 19 29 35 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 24 E 24 25 41 41 9 19 30 35 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT S 25 S 25 25 41 41 6 19 30 35 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT N 26 N 26 25 41 41 5 13 30 35 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT H 27 H 27 25 41 41 5 18 30 35 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 28 C 28 25 41 41 5 19 30 35 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT V 29 V 29 25 41 41 9 19 30 35 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 30 E 30 25 41 41 9 19 30 35 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT V 31 V 31 25 41 41 9 19 30 35 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT R 32 R 32 25 41 41 9 19 30 35 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 33 C 33 25 41 41 5 19 30 35 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT S 34 S 34 25 41 41 3 15 30 35 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT D 35 D 35 25 41 41 3 19 30 35 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 36 T 36 25 41 41 9 19 30 35 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 37 K 37 25 41 41 7 19 30 35 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT Y 38 Y 38 25 41 41 5 19 30 35 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 39 T 39 25 41 41 3 19 30 35 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT L 40 L 40 25 41 41 6 19 30 35 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 41 C 41 25 41 41 8 19 30 35 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_AVERAGE LCS_A: 85.03 ( 55.09 100.00 100.00 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 9 19 30 35 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 GDT PERCENT_AT 21.95 46.34 73.17 85.37 95.12 97.56 97.56 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 GDT RMS_LOCAL 0.39 0.66 0.95 1.14 1.40 1.49 1.49 1.64 1.64 1.64 1.64 1.64 1.64 1.64 1.64 1.64 1.64 1.64 1.64 1.64 GDT RMS_ALL_AT 1.84 2.20 1.80 1.77 1.68 1.66 1.66 1.64 1.64 1.64 1.64 1.64 1.64 1.64 1.64 1.64 1.64 1.64 1.64 1.64 # Checking swapping # possible swapping detected: E 10 E 10 # possible swapping detected: F 15 F 15 # possible swapping detected: E 19 E 19 # possible swapping detected: E 30 E 30 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA S 1 S 1 4.468 0 0.111 0.587 6.579 2.727 5.152 4.684 LGA Q 2 Q 2 3.072 0 0.252 1.190 3.700 25.455 26.061 3.700 LGA E 3 E 3 2.614 0 0.051 0.966 4.438 32.727 23.434 4.438 LGA T 4 T 4 1.884 0 0.035 1.229 3.811 55.000 47.792 3.811 LGA R 5 R 5 1.314 0 0.027 1.379 10.217 70.000 31.074 10.217 LGA K 6 K 6 0.576 0 0.037 0.692 3.812 86.364 57.374 3.608 LGA K 7 K 7 0.943 0 0.025 0.609 2.796 77.727 57.778 2.796 LGA C 8 C 8 0.709 0 0.029 0.096 1.053 77.727 79.091 0.861 LGA T 9 T 9 0.956 0 0.045 0.138 1.265 73.636 74.805 0.963 LGA E 10 E 10 1.175 0 0.053 1.000 3.285 65.909 52.121 3.285 LGA M 11 M 11 1.280 0 0.051 0.985 5.108 61.818 51.818 5.108 LGA K 12 K 12 1.054 0 0.056 0.646 2.871 65.455 55.354 2.871 LGA K 13 K 13 1.877 0 0.039 0.942 4.130 41.818 43.232 4.130 LGA K 14 K 14 2.448 0 0.033 0.989 6.629 35.455 22.424 6.629 LGA F 15 F 15 1.760 0 0.160 0.218 2.802 51.364 45.785 2.802 LGA K 16 K 16 2.287 0 0.666 1.344 6.336 34.545 21.616 5.710 LGA N 17 N 17 1.204 0 0.269 0.979 3.636 69.545 48.182 3.218 LGA C 18 C 18 1.351 0 0.055 0.123 2.213 73.636 66.364 2.213 LGA E 19 E 19 1.004 0 0.122 0.456 3.220 73.636 62.222 3.220 LGA V 20 V 20 1.451 0 0.153 0.299 2.554 52.273 49.870 1.549 LGA R 21 R 21 1.678 0 0.042 1.363 5.373 58.182 39.339 5.373 LGA C 22 C 22 1.790 0 0.124 0.178 1.901 50.909 50.909 1.635 LGA D 23 D 23 2.310 0 0.419 1.145 5.121 31.364 23.182 3.590 LGA E 24 E 24 0.566 0 0.032 0.698 3.682 81.818 56.970 3.682 LGA S 25 S 25 1.376 0 0.078 0.142 1.799 65.455 60.606 1.799 LGA N 26 N 26 1.852 0 0.168 1.263 6.100 50.909 30.455 6.100 LGA H 27 H 27 1.170 0 0.181 0.889 5.920 69.545 38.364 5.920 LGA C 28 C 28 0.924 0 0.191 0.669 2.086 70.000 66.667 2.086 LGA V 29 V 29 0.604 0 0.077 0.341 1.266 81.818 79.481 0.703 LGA E 30 E 30 0.340 0 0.046 0.263 1.370 100.000 90.303 1.370 LGA V 31 V 31 0.749 0 0.053 1.078 3.291 86.364 72.987 0.979 LGA R 32 R 32 0.597 0 0.169 1.099 5.905 81.818 50.909 5.905 LGA C 33 C 33 1.250 0 0.381 0.413 1.999 61.818 60.606 1.673 LGA S 34 S 34 2.019 0 0.172 0.201 2.727 35.455 40.606 1.886 LGA D 35 D 35 1.800 0 0.045 1.079 3.347 50.909 43.636 2.047 LGA T 36 T 36 1.314 0 0.122 0.941 3.481 65.455 54.805 2.451 LGA K 37 K 37 0.966 0 0.091 0.661 1.776 70.000 71.313 1.235 LGA Y 38 Y 38 1.675 0 0.056 1.330 5.158 70.455 40.909 5.158 LGA T 39 T 39 1.488 0 0.105 0.177 2.993 48.636 42.597 2.263 LGA L 40 L 40 0.150 0 0.126 1.070 4.259 95.455 67.727 4.259 LGA C 41 C 41 0.724 2 0.028 0.114 1.305 57.273 58.701 0.359 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 41 164 163 99.39 335 333 99.40 41 41 SUMMARY(RMSD_GDC): 1.640 1.730 2.506 61.231 50.308 29.579 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 41 41 4.0 41 1.64 82.927 92.127 2.357 LGA_LOCAL RMSD: 1.640 Number of atoms: 41 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 1.640 Number of assigned atoms: 41 Std_ASGN_ATOMS RMSD: 1.640 Standard rmsd on all 41 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.235801 * X + 0.897373 * Y + -0.372988 * Z + -7.786512 Y_new = 0.493261 * X + 0.441214 * Y + 0.749682 * Z + -44.047768 Z_new = 0.837312 * X + -0.007204 * Y + -0.546678 * Z + -8.287492 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 2.016726 -0.992348 -3.128415 [DEG: 115.5499 -56.8573 -179.2450 ] ZXZ: -2.679925 2.149188 1.579400 [DEG: -153.5484 123.1394 90.4930 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0955TS329_1 REMARK 2: T0955.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS329_1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 41 41 4.0 41 1.64 92.127 1.64 REMARK ---------------------------------------------------------- MOLECULE T0955TS329_1 PFRMAT TS TARGET T0955 MODEL 1 PARENT NA ATOM 1 N SER 1 -4.256 -12.010 0.550 1.00 0.00 N ATOM 2 CA SER 1 -3.487 -12.925 1.460 1.00 0.00 C ATOM 3 CB SER 1 -2.404 -13.777 0.870 1.00 0.00 C ATOM 4 OG SER 1 -1.337 -13.057 0.269 1.00 0.00 O ATOM 5 C SER 1 -2.903 -12.144 2.681 1.00 0.00 C ATOM 6 O SER 1 -2.768 -10.900 2.703 1.00 0.00 O ATOM 7 N GLN 2 -2.483 -12.890 3.658 1.00 0.00 N ATOM 8 CA GLN 2 -1.485 -12.571 4.658 1.00 0.00 C ATOM 9 CB GLN 2 -1.058 -13.904 5.337 1.00 0.00 C ATOM 10 CG GLN 2 0.052 -13.741 6.413 1.00 0.00 C ATOM 11 CD GLN 2 -0.325 -12.864 7.618 1.00 0.00 C ATOM 12 OE1 GLN 2 0.247 -11.845 7.967 1.00 0.00 O ATOM 13 NE2 GLN 2 -1.248 -13.308 8.443 1.00 0.00 N ATOM 14 C GLN 2 -0.271 -11.875 4.053 1.00 0.00 C ATOM 15 O GLN 2 0.183 -10.954 4.677 1.00 0.00 O ATOM 16 N GLU 3 0.307 -12.299 2.913 1.00 0.00 N ATOM 17 CA GLU 3 1.462 -11.666 2.316 1.00 0.00 C ATOM 18 CB GLU 3 1.975 -12.592 1.190 1.00 0.00 C ATOM 19 CG GLU 3 3.124 -12.086 0.404 1.00 0.00 C ATOM 20 CD GLU 3 3.656 -13.116 -0.584 1.00 0.00 C ATOM 21 OE1 GLU 3 2.856 -13.589 -1.438 1.00 0.00 O ATOM 22 OE2 GLU 3 4.825 -13.541 -0.410 1.00 0.00 O ATOM 23 C GLU 3 1.122 -10.259 1.678 1.00 0.00 C ATOM 24 O GLU 3 2.046 -9.399 1.587 1.00 0.00 O ATOM 25 N THR 4 -0.142 -10.032 1.188 1.00 0.00 N ATOM 26 CA THR 4 -0.574 -8.757 0.542 1.00 0.00 C ATOM 27 CB THR 4 -1.929 -8.958 -0.163 1.00 0.00 C ATOM 28 CG2 THR 4 -2.296 -7.912 -1.241 1.00 0.00 C ATOM 29 OG1 THR 4 -2.002 -10.246 -0.727 1.00 0.00 O ATOM 30 C THR 4 -0.579 -7.662 1.663 1.00 0.00 C ATOM 31 O THR 4 -0.089 -6.599 1.414 1.00 0.00 O ATOM 32 N ARG 5 -1.006 -7.953 2.909 1.00 0.00 N ATOM 33 CA ARG 5 -0.942 -6.997 4.048 1.00 0.00 C ATOM 34 CB ARG 5 -1.519 -7.802 5.148 1.00 0.00 C ATOM 35 CG ARG 5 -1.672 -7.194 6.562 1.00 0.00 C ATOM 36 CD ARG 5 -2.845 -6.280 6.696 1.00 0.00 C ATOM 37 NE ARG 5 -2.962 -5.815 8.145 1.00 0.00 N ATOM 38 CZ ARG 5 -4.040 -5.583 8.887 1.00 0.00 C ATOM 39 NH1 ARG 5 -5.241 -5.754 8.339 1.00 0.00 N ATOM 40 NH2 ARG 5 -3.964 -5.263 10.153 1.00 0.00 N ATOM 41 C ARG 5 0.469 -6.554 4.387 1.00 0.00 C ATOM 42 O ARG 5 0.742 -5.380 4.751 1.00 0.00 O ATOM 43 N LYS 6 1.398 -7.427 4.112 1.00 0.00 N ATOM 44 CA LYS 6 2.839 -7.203 4.386 1.00 0.00 C ATOM 45 CB LYS 6 3.621 -8.518 4.628 1.00 0.00 C ATOM 46 CG LYS 6 5.132 -8.462 4.699 1.00 0.00 C ATOM 47 CD LYS 6 5.609 -9.933 4.624 1.00 0.00 C ATOM 48 CE LYS 6 7.149 -9.911 4.830 1.00 0.00 C ATOM 49 NZ LYS 6 7.656 -11.219 4.501 1.00 0.00 N ATOM 50 C LYS 6 3.401 -6.369 3.300 1.00 0.00 C ATOM 51 O LYS 6 4.126 -5.391 3.633 1.00 0.00 O ATOM 52 N LYS 7 3.000 -6.571 2.052 1.00 0.00 N ATOM 53 CA LYS 7 3.335 -5.730 0.910 1.00 0.00 C ATOM 54 CB LYS 7 2.806 -6.443 -0.311 1.00 0.00 C ATOM 55 CG LYS 7 3.167 -5.838 -1.629 1.00 0.00 C ATOM 56 CD LYS 7 2.650 -6.776 -2.691 1.00 0.00 C ATOM 57 CE LYS 7 3.118 -6.209 -4.063 1.00 0.00 C ATOM 58 NZ LYS 7 2.631 -7.139 -5.134 1.00 0.00 N ATOM 59 C LYS 7 2.712 -4.303 1.041 1.00 0.00 C ATOM 60 O LYS 7 3.261 -3.318 0.664 1.00 0.00 O ATOM 61 N CYS 8 1.468 -4.280 1.501 1.00 0.00 N ATOM 62 CA CYS 8 0.666 -3.098 1.821 1.00 0.00 C ATOM 63 CB CYS 8 -0.735 -3.392 2.209 1.00 0.00 C ATOM 64 SG CYS 8 -1.965 -2.071 2.135 1.00 0.00 S ATOM 65 C CYS 8 1.314 -2.222 2.873 1.00 0.00 C ATOM 66 O CYS 8 1.397 -1.014 2.627 1.00 0.00 O ATOM 67 N THR 9 1.909 -2.872 3.937 1.00 0.00 N ATOM 68 CA THR 9 2.582 -2.182 5.082 1.00 0.00 C ATOM 69 CB THR 9 2.688 -3.193 6.257 1.00 0.00 C ATOM 70 CG2 THR 9 3.466 -2.740 7.463 1.00 0.00 C ATOM 71 OG1 THR 9 1.437 -3.632 6.784 1.00 0.00 O ATOM 72 C THR 9 3.982 -1.703 4.728 1.00 0.00 C ATOM 73 O THR 9 4.338 -0.606 5.185 1.00 0.00 O ATOM 74 N GLU 10 4.736 -2.390 3.876 1.00 0.00 N ATOM 75 CA GLU 10 5.869 -1.758 3.202 1.00 0.00 C ATOM 76 CB GLU 10 6.680 -2.763 2.422 1.00 0.00 C ATOM 77 CG GLU 10 7.579 -3.787 3.111 1.00 0.00 C ATOM 78 CD GLU 10 8.567 -3.151 4.078 1.00 0.00 C ATOM 79 OE1 GLU 10 9.029 -2.010 3.846 1.00 0.00 O ATOM 80 OE2 GLU 10 9.008 -3.783 5.124 1.00 0.00 O ATOM 81 C GLU 10 5.552 -0.538 2.346 1.00 0.00 C ATOM 82 O GLU 10 6.316 0.426 2.471 1.00 0.00 O ATOM 83 N MET 11 4.381 -0.525 1.663 1.00 0.00 N ATOM 84 CA MET 11 3.868 0.664 0.937 1.00 0.00 C ATOM 85 CB MET 11 2.697 0.357 0.071 1.00 0.00 C ATOM 86 CG MET 11 2.631 1.173 -1.252 1.00 0.00 C ATOM 87 SD MET 11 4.002 0.883 -2.367 1.00 0.00 S ATOM 88 CE MET 11 3.210 1.745 -3.827 1.00 0.00 C ATOM 89 C MET 11 3.555 1.860 1.840 1.00 0.00 C ATOM 90 O MET 11 3.777 3.034 1.414 1.00 0.00 O ATOM 91 N LYS 12 3.020 1.609 3.067 1.00 0.00 N ATOM 92 CA LYS 12 2.722 2.529 4.221 1.00 0.00 C ATOM 93 CB LYS 12 1.930 1.754 5.326 1.00 0.00 C ATOM 94 CG LYS 12 1.221 2.758 6.255 1.00 0.00 C ATOM 95 CD LYS 12 0.055 2.290 7.158 1.00 0.00 C ATOM 96 CE LYS 12 -0.417 3.467 8.015 1.00 0.00 C ATOM 97 NZ LYS 12 -1.404 3.113 9.081 1.00 0.00 N ATOM 98 C LYS 12 4.016 3.103 4.857 1.00 0.00 C ATOM 99 O LYS 12 4.050 4.154 5.489 1.00 0.00 O ATOM 100 N LYS 13 5.087 2.328 4.838 1.00 0.00 N ATOM 101 CA LYS 13 6.448 2.696 5.291 1.00 0.00 C ATOM 102 CB LYS 13 7.207 1.452 5.629 1.00 0.00 C ATOM 103 CG LYS 13 6.631 0.717 6.807 1.00 0.00 C ATOM 104 CD LYS 13 7.233 -0.684 7.145 1.00 0.00 C ATOM 105 CE LYS 13 8.771 -0.659 7.301 1.00 0.00 C ATOM 106 NZ LYS 13 9.295 -2.019 7.366 1.00 0.00 N ATOM 107 C LYS 13 7.200 3.506 4.189 1.00 0.00 C ATOM 108 O LYS 13 7.910 4.468 4.420 1.00 0.00 O ATOM 109 N LYS 14 7.055 3.146 2.916 1.00 0.00 N ATOM 110 CA LYS 14 7.683 3.890 1.771 1.00 0.00 C ATOM 111 CB LYS 14 7.658 2.967 0.540 1.00 0.00 C ATOM 112 CG LYS 14 8.247 3.653 -0.714 1.00 0.00 C ATOM 113 CD LYS 14 8.405 2.611 -1.775 1.00 0.00 C ATOM 114 CE LYS 14 9.200 3.083 -3.024 1.00 0.00 C ATOM 115 NZ LYS 14 10.667 3.230 -2.817 1.00 0.00 N ATOM 116 C LYS 14 6.932 5.208 1.511 1.00 0.00 C ATOM 117 O LYS 14 7.598 6.207 1.218 1.00 0.00 O ATOM 118 N PHE 15 5.607 5.208 1.592 1.00 0.00 N ATOM 119 CA PHE 15 4.844 6.415 1.371 1.00 0.00 C ATOM 120 CB PHE 15 3.989 6.140 0.169 1.00 0.00 C ATOM 121 CG PHE 15 4.797 5.881 -1.122 1.00 0.00 C ATOM 122 CD1 PHE 15 5.596 6.854 -1.650 1.00 0.00 C ATOM 123 CE1 PHE 15 6.238 6.685 -2.886 1.00 0.00 C ATOM 124 CZ PHE 15 6.261 5.405 -3.487 1.00 0.00 C ATOM 125 CE2 PHE 15 5.549 4.347 -2.897 1.00 0.00 C ATOM 126 CD2 PHE 15 4.926 4.546 -1.614 1.00 0.00 C ATOM 127 C PHE 15 4.071 6.807 2.618 1.00 0.00 C ATOM 128 O PHE 15 2.877 6.474 2.812 1.00 0.00 O ATOM 129 N LYS 16 4.704 7.463 3.616 1.00 0.00 N ATOM 130 CA LYS 16 4.088 7.693 4.883 1.00 0.00 C ATOM 131 CB LYS 16 5.211 8.055 5.894 1.00 0.00 C ATOM 132 CG LYS 16 6.054 6.846 6.331 1.00 0.00 C ATOM 133 CD LYS 16 7.039 7.287 7.435 1.00 0.00 C ATOM 134 CE LYS 16 8.060 6.280 7.754 1.00 0.00 C ATOM 135 NZ LYS 16 8.245 6.176 9.241 1.00 0.00 N ATOM 136 C LYS 16 3.096 8.918 4.862 1.00 0.00 C ATOM 137 O LYS 16 3.013 9.568 3.834 1.00 0.00 O ATOM 138 N ASN 17 2.244 9.081 5.887 1.00 0.00 N ATOM 139 CA ASN 17 1.191 10.158 5.924 1.00 0.00 C ATOM 140 CB ASN 17 1.896 11.470 6.162 1.00 0.00 C ATOM 141 CG ASN 17 1.020 12.515 6.840 1.00 0.00 C ATOM 142 OD1 ASN 17 0.000 12.266 7.559 1.00 0.00 O ATOM 143 ND2 ASN 17 1.392 13.729 6.731 1.00 0.00 N ATOM 144 C ASN 17 0.153 10.211 4.764 1.00 0.00 C ATOM 145 O ASN 17 -0.414 11.291 4.566 1.00 0.00 O ATOM 146 N CYS 18 -0.012 9.149 3.970 1.00 0.00 N ATOM 147 CA CYS 18 -0.852 9.139 2.736 1.00 0.00 C ATOM 148 CB CYS 18 0.005 9.119 1.484 1.00 0.00 C ATOM 149 SG CYS 18 0.746 10.735 1.183 1.00 0.00 S ATOM 150 C CYS 18 -1.685 7.932 2.783 1.00 0.00 C ATOM 151 O CYS 18 -1.292 6.846 3.294 1.00 0.00 O ATOM 152 N GLU 19 -2.875 8.032 2.233 1.00 0.00 N ATOM 153 CA GLU 19 -3.843 6.917 2.152 1.00 0.00 C ATOM 154 CB GLU 19 -5.184 7.440 1.789 1.00 0.00 C ATOM 155 CG GLU 19 -6.252 6.422 2.147 1.00 0.00 C ATOM 156 CD GLU 19 -7.661 6.764 1.620 1.00 0.00 C ATOM 157 OE1 GLU 19 -8.449 7.314 2.436 1.00 0.00 O ATOM 158 OE2 GLU 19 -7.909 6.705 0.391 1.00 0.00 O ATOM 159 C GLU 19 -3.445 5.641 1.319 1.00 0.00 C ATOM 160 O GLU 19 -3.383 5.812 0.102 1.00 0.00 O ATOM 161 N VAL 20 -3.392 4.386 1.847 1.00 0.00 N ATOM 162 CA VAL 20 -3.106 3.044 1.166 1.00 0.00 C ATOM 163 CB VAL 20 -2.123 2.170 2.041 1.00 0.00 C ATOM 164 CG1 VAL 20 -1.439 1.128 1.151 1.00 0.00 C ATOM 165 CG2 VAL 20 -0.953 3.040 2.563 1.00 0.00 C ATOM 166 C VAL 20 -4.438 2.303 0.785 1.00 0.00 C ATOM 167 O VAL 20 -5.461 2.467 1.451 1.00 0.00 O ATOM 168 N ARG 21 -4.468 1.621 -0.350 1.00 0.00 N ATOM 169 CA ARG 21 -5.440 0.575 -0.737 1.00 0.00 C ATOM 170 CB ARG 21 -6.324 1.086 -1.884 1.00 0.00 C ATOM 171 CG ARG 21 -7.378 0.026 -2.380 1.00 0.00 C ATOM 172 CD ARG 21 -8.254 0.588 -3.519 1.00 0.00 C ATOM 173 NE ARG 21 -7.468 0.849 -4.777 1.00 0.00 N ATOM 174 CZ ARG 21 -6.936 -0.065 -5.606 1.00 0.00 C ATOM 175 NH1 ARG 21 -7.053 -1.342 -5.376 1.00 0.00 N ATOM 176 NH2 ARG 21 -6.115 0.334 -6.589 1.00 0.00 N ATOM 177 C ARG 21 -4.658 -0.680 -1.126 1.00 0.00 C ATOM 178 O ARG 21 -3.841 -0.566 -2.039 1.00 0.00 O ATOM 179 N CYS 22 -4.980 -1.737 -0.380 1.00 0.00 N ATOM 180 CA CYS 22 -4.475 -3.062 -0.675 1.00 0.00 C ATOM 181 CB CYS 22 -4.208 -3.742 0.661 1.00 0.00 C ATOM 182 SG CYS 22 -3.797 -2.898 2.214 1.00 0.00 S ATOM 183 C CYS 22 -5.523 -3.848 -1.642 1.00 0.00 C ATOM 184 O CYS 22 -6.741 -3.973 -1.385 1.00 0.00 O ATOM 185 N ASP 23 -4.936 -4.491 -2.650 1.00 0.00 N ATOM 186 CA ASP 23 -5.531 -5.292 -3.672 1.00 0.00 C ATOM 187 CB ASP 23 -5.272 -4.732 -5.075 1.00 0.00 C ATOM 188 CG ASP 23 -6.083 -5.524 -6.138 1.00 0.00 C ATOM 189 OD1 ASP 23 -5.828 -5.111 -7.301 1.00 0.00 O ATOM 190 OD2 ASP 23 -6.992 -6.324 -5.828 1.00 0.00 O ATOM 191 C ASP 23 -5.231 -6.762 -3.497 1.00 0.00 C ATOM 192 O ASP 23 -4.405 -7.363 -4.152 1.00 0.00 O ATOM 193 N GLU 24 -6.022 -7.451 -2.693 1.00 0.00 N ATOM 194 CA GLU 24 -5.988 -8.901 -2.510 1.00 0.00 C ATOM 195 CB GLU 24 -6.808 -9.364 -1.214 1.00 0.00 C ATOM 196 CG GLU 24 -6.026 -8.872 0.042 1.00 0.00 C ATOM 197 CD GLU 24 -6.623 -9.587 1.262 1.00 0.00 C ATOM 198 OE1 GLU 24 -7.254 -8.880 2.077 1.00 0.00 O ATOM 199 OE2 GLU 24 -6.472 -10.798 1.493 1.00 0.00 O ATOM 200 C GLU 24 -6.340 -9.700 -3.751 1.00 0.00 C ATOM 201 O GLU 24 -5.824 -10.798 -3.926 1.00 0.00 O ATOM 202 N SER 25 -7.144 -9.214 -4.694 1.00 0.00 N ATOM 203 CA SER 25 -7.562 -9.835 -5.974 1.00 0.00 C ATOM 204 CB SER 25 -8.779 -9.138 -6.584 1.00 0.00 C ATOM 205 OG SER 25 -9.915 -9.261 -5.721 1.00 0.00 O ATOM 206 C SER 25 -6.454 -9.817 -7.070 1.00 0.00 C ATOM 207 O SER 25 -6.444 -10.734 -7.805 1.00 0.00 O ATOM 208 N ASN 26 -5.594 -8.823 -7.043 1.00 0.00 N ATOM 209 CA ASN 26 -4.367 -8.816 -7.836 1.00 0.00 C ATOM 210 CB ASN 26 -4.471 -7.600 -8.785 1.00 0.00 C ATOM 211 CG ASN 26 -3.568 -7.597 -9.965 1.00 0.00 C ATOM 212 OD1 ASN 26 -3.355 -8.608 -10.636 1.00 0.00 O ATOM 213 ND2 ASN 26 -3.124 -6.493 -10.491 1.00 0.00 N ATOM 214 C ASN 26 -3.063 -8.872 -7.137 1.00 0.00 C ATOM 215 O ASN 26 -2.035 -8.663 -7.807 1.00 0.00 O ATOM 216 N HIS 27 -3.076 -9.121 -5.860 1.00 0.00 N ATOM 217 CA HIS 27 -1.916 -9.018 -4.937 1.00 0.00 C ATOM 218 CB HIS 27 -1.118 -10.298 -4.878 1.00 0.00 C ATOM 219 CG HIS 27 -0.181 -10.465 -3.751 1.00 0.00 C ATOM 220 ND1 HIS 27 0.392 -9.509 -2.959 1.00 0.00 N ATOM 221 CE1 HIS 27 1.324 -10.146 -2.237 1.00 0.00 C ATOM 222 NE2 HIS 27 1.241 -11.454 -2.457 1.00 0.00 N ATOM 223 CD2 HIS 27 0.319 -11.702 -3.467 1.00 0.00 C ATOM 224 C HIS 27 -1.128 -7.770 -5.319 1.00 0.00 C ATOM 225 O HIS 27 0.033 -7.850 -5.745 1.00 0.00 O ATOM 226 N CYS 28 -1.798 -6.632 -5.258 1.00 0.00 N ATOM 227 CA CYS 28 -1.212 -5.314 -5.607 1.00 0.00 C ATOM 228 CB CYS 28 -1.751 -4.875 -6.997 1.00 0.00 C ATOM 229 SG CYS 28 -0.779 -3.581 -7.879 1.00 0.00 S ATOM 230 C CYS 28 -1.475 -4.263 -4.461 1.00 0.00 C ATOM 231 O CYS 28 -2.143 -4.473 -3.415 1.00 0.00 O ATOM 232 N VAL 29 -0.905 -3.045 -4.624 1.00 0.00 N ATOM 233 CA VAL 29 -1.086 -1.892 -3.706 1.00 0.00 C ATOM 234 CB VAL 29 0.060 -1.871 -2.703 1.00 0.00 C ATOM 235 CG1 VAL 29 -0.655 -1.280 -1.461 1.00 0.00 C ATOM 236 CG2 VAL 29 0.637 -3.172 -2.192 1.00 0.00 C ATOM 237 C VAL 29 -1.011 -0.491 -4.379 1.00 0.00 C ATOM 238 O VAL 29 -0.116 -0.238 -5.136 1.00 0.00 O ATOM 239 N GLU 30 -1.993 0.356 -4.103 1.00 0.00 N ATOM 240 CA GLU 30 -2.021 1.723 -4.367 1.00 0.00 C ATOM 241 CB GLU 30 -3.306 1.987 -5.195 1.00 0.00 C ATOM 242 CG GLU 30 -3.489 3.349 -5.727 1.00 0.00 C ATOM 243 CD GLU 30 -4.657 3.397 -6.657 1.00 0.00 C ATOM 244 OE1 GLU 30 -5.785 3.230 -6.136 1.00 0.00 O ATOM 245 OE2 GLU 30 -4.432 3.509 -7.901 1.00 0.00 O ATOM 246 C GLU 30 -1.859 2.547 -3.111 1.00 0.00 C ATOM 247 O GLU 30 -2.238 2.225 -2.013 1.00 0.00 O ATOM 248 N VAL 31 -1.231 3.716 -3.217 1.00 0.00 N ATOM 249 CA VAL 31 -1.356 4.778 -2.241 1.00 0.00 C ATOM 250 CB VAL 31 -0.075 4.681 -1.382 1.00 0.00 C ATOM 251 CG1 VAL 31 1.259 4.925 -2.105 1.00 0.00 C ATOM 252 CG2 VAL 31 -0.089 5.523 -0.126 1.00 0.00 C ATOM 253 C VAL 31 -1.419 6.120 -2.882 1.00 0.00 C ATOM 254 O VAL 31 -0.787 6.383 -3.886 1.00 0.00 O ATOM 255 N ARG 32 -2.149 7.027 -2.237 1.00 0.00 N ATOM 256 CA ARG 32 -2.563 8.427 -2.688 1.00 0.00 C ATOM 257 CB ARG 32 -3.970 8.378 -3.259 1.00 0.00 C ATOM 258 CG ARG 32 -5.058 8.434 -2.165 1.00 0.00 C ATOM 259 CD ARG 32 -6.510 8.591 -2.679 1.00 0.00 C ATOM 260 NE ARG 32 -7.410 8.625 -1.579 1.00 0.00 N ATOM 261 CZ ARG 32 -7.867 9.657 -0.858 1.00 0.00 C ATOM 262 NH1 ARG 32 -7.489 10.854 -1.230 1.00 0.00 N ATOM 263 NH2 ARG 32 -8.583 9.432 0.219 1.00 0.00 N ATOM 264 C ARG 32 -2.257 9.478 -1.657 1.00 0.00 C ATOM 265 O ARG 32 -2.566 9.400 -0.456 1.00 0.00 O ATOM 266 N CYS 33 -1.707 10.572 -2.123 1.00 0.00 N ATOM 267 CA CYS 33 -1.372 11.715 -1.388 1.00 0.00 C ATOM 268 CB CYS 33 0.119 11.945 -1.486 1.00 0.00 C ATOM 269 SG CYS 33 1.148 10.635 -0.783 1.00 0.00 S ATOM 270 C CYS 33 -2.170 12.947 -1.825 1.00 0.00 C ATOM 271 O CYS 33 -3.246 12.811 -2.466 1.00 0.00 O ATOM 272 N SER 34 -1.723 14.171 -1.548 1.00 0.00 N ATOM 273 CA SER 34 -2.443 15.404 -1.928 1.00 0.00 C ATOM 274 CB SER 34 -1.833 16.599 -1.254 1.00 0.00 C ATOM 275 OG SER 34 -1.903 16.559 0.111 1.00 0.00 O ATOM 276 C SER 34 -2.406 15.666 -3.386 1.00 0.00 C ATOM 277 O SER 34 -3.364 16.178 -3.969 1.00 0.00 O ATOM 278 N ASP 35 -1.288 15.264 -4.041 1.00 0.00 N ATOM 279 CA ASP 35 -1.063 15.462 -5.515 1.00 0.00 C ATOM 280 CB ASP 35 -0.092 16.658 -5.671 1.00 0.00 C ATOM 281 CG ASP 35 0.356 17.036 -7.141 1.00 0.00 C ATOM 282 OD1 ASP 35 -0.618 17.307 -7.862 1.00 0.00 O ATOM 283 OD2 ASP 35 1.554 16.974 -7.496 1.00 0.00 O ATOM 284 C ASP 35 -0.563 14.251 -6.237 1.00 0.00 C ATOM 285 O ASP 35 -0.889 13.967 -7.428 1.00 0.00 O ATOM 286 N THR 36 0.044 13.324 -5.544 1.00 0.00 N ATOM 287 CA THR 36 0.786 12.168 -6.135 1.00 0.00 C ATOM 288 CB THR 36 2.259 12.282 -5.740 1.00 0.00 C ATOM 289 CG2 THR 36 2.961 13.497 -6.401 1.00 0.00 C ATOM 290 OG1 THR 36 2.436 12.378 -4.265 1.00 0.00 O ATOM 291 C THR 36 0.155 10.806 -5.689 1.00 0.00 C ATOM 292 O THR 36 -0.465 10.656 -4.629 1.00 0.00 O ATOM 293 N LYS 37 0.331 9.823 -6.553 1.00 0.00 N ATOM 294 CA LYS 37 -0.175 8.474 -6.320 1.00 0.00 C ATOM 295 CB LYS 37 -1.560 8.427 -6.921 1.00 0.00 C ATOM 296 CG LYS 37 -2.327 7.134 -6.781 1.00 0.00 C ATOM 297 CD LYS 37 -3.744 7.261 -7.470 1.00 0.00 C ATOM 298 CE LYS 37 -3.752 7.094 -9.010 1.00 0.00 C ATOM 299 NZ LYS 37 -3.283 5.725 -9.397 1.00 0.00 N ATOM 300 C LYS 37 0.725 7.383 -6.857 1.00 0.00 C ATOM 301 O LYS 37 1.260 7.593 -7.940 1.00 0.00 O ATOM 302 N TYR 38 0.906 6.278 -6.154 1.00 0.00 N ATOM 303 CA TYR 38 1.945 5.319 -6.348 1.00 0.00 C ATOM 304 CB TYR 38 3.094 5.559 -5.377 1.00 0.00 C ATOM 305 CG TYR 38 3.776 6.914 -5.411 1.00 0.00 C ATOM 306 CD1 TYR 38 4.749 7.230 -6.373 1.00 0.00 C ATOM 307 CE1 TYR 38 5.545 8.380 -6.218 1.00 0.00 C ATOM 308 CZ TYR 38 5.273 9.267 -5.145 1.00 0.00 C ATOM 309 OH TYR 38 6.007 10.427 -5.060 1.00 0.00 O ATOM 310 CE2 TYR 38 4.274 9.026 -4.245 1.00 0.00 C ATOM 311 CD2 TYR 38 3.505 7.889 -4.401 1.00 0.00 C ATOM 312 C TYR 38 1.436 3.885 -6.304 1.00 0.00 C ATOM 313 O TYR 38 0.568 3.531 -5.539 1.00 0.00 O ATOM 314 N THR 39 2.092 3.036 -7.111 1.00 0.00 N ATOM 315 CA THR 39 1.614 1.647 -7.299 1.00 0.00 C ATOM 316 CB THR 39 1.075 1.518 -8.773 1.00 0.00 C ATOM 317 CG2 THR 39 0.661 0.108 -9.253 1.00 0.00 C ATOM 318 OG1 THR 39 -0.020 2.312 -9.095 1.00 0.00 O ATOM 319 C THR 39 2.717 0.566 -6.973 1.00 0.00 C ATOM 320 O THR 39 3.895 0.657 -7.304 1.00 0.00 O ATOM 321 N LEU 40 2.345 -0.618 -6.440 1.00 0.00 N ATOM 322 CA LEU 40 3.068 -1.815 -6.271 1.00 0.00 C ATOM 323 CB LEU 40 3.603 -1.769 -4.835 1.00 0.00 C ATOM 324 CG LEU 40 4.445 -2.952 -4.342 1.00 0.00 C ATOM 325 CD1 LEU 40 5.753 -3.132 -5.170 1.00 0.00 C ATOM 326 CD2 LEU 40 4.818 -2.735 -2.872 1.00 0.00 C ATOM 327 C LEU 40 2.295 -3.038 -6.725 1.00 0.00 C ATOM 328 O LEU 40 1.669 -3.654 -5.845 1.00 0.00 O ATOM 329 N CYS 41 2.503 -3.637 -7.890 1.00 0.00 N ATOM 330 CA CYS 41 2.036 -5.050 -8.192 1.00 0.00 C ATOM 331 CB CYS 41 1.256 -5.073 -9.521 1.00 0.00 C ATOM 332 SG CYS 41 -0.236 -4.216 -9.705 1.00 0.00 S ATOM 333 C CYS 41 3.211 -5.972 -8.429 1.00 0.00 C ATOM 334 OC1 CYS 41 3.300 -7.048 -7.806 1.00 0.00 O ATOM 335 OC2 CYS 41 4.144 -5.500 -9.149 1.00 0.00 O TER END