####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 41 ( 335), selected 41 , name T0955TS221_1 # Molecule2: number of CA atoms 41 ( 665), selected 41 , name T0955.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS221_1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 41 1 - 41 1.71 1.71 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 41 1 - 41 1.71 1.71 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 30 5 - 34 0.97 1.84 LONGEST_CONTINUOUS_SEGMENT: 30 6 - 35 0.99 1.84 LCS_AVERAGE: 61.39 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 41 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 1 S 1 4 41 41 3 15 29 33 36 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT Q 2 Q 2 20 41 41 5 12 19 29 35 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 3 E 3 21 41 41 5 19 25 33 36 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 4 T 4 21 41 41 5 19 25 33 36 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT R 5 R 5 30 41 41 5 15 25 33 36 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 6 K 6 30 41 41 5 19 29 33 36 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 7 K 7 30 41 41 10 24 29 33 36 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 8 C 8 30 41 41 5 24 29 33 36 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 9 T 9 30 41 41 9 24 29 33 36 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 10 E 10 30 41 41 13 24 29 33 36 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT M 11 M 11 30 41 41 13 24 29 33 36 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 12 K 12 30 41 41 13 24 29 33 36 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 13 K 13 30 41 41 13 24 29 33 36 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 14 K 14 30 41 41 13 24 29 33 36 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT F 15 F 15 30 41 41 13 24 29 33 36 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 16 K 16 30 41 41 13 24 29 33 36 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT N 17 N 17 30 41 41 13 24 29 33 36 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 18 C 18 30 41 41 13 24 29 33 36 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 19 E 19 30 41 41 13 24 29 33 36 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT V 20 V 20 30 41 41 5 24 29 33 36 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT R 21 R 21 30 41 41 5 22 29 33 36 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 22 C 22 30 41 41 6 22 29 33 36 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT D 23 D 23 30 41 41 4 22 29 33 36 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 24 E 24 30 41 41 5 24 29 33 36 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT S 25 S 25 30 41 41 11 24 29 33 36 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT N 26 N 26 30 41 41 13 24 29 33 36 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT H 27 H 27 30 41 41 13 24 29 33 36 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 28 C 28 30 41 41 13 24 29 33 36 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT V 29 V 29 30 41 41 13 24 29 33 36 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 30 E 30 30 41 41 11 24 29 33 36 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT V 31 V 31 30 41 41 11 24 29 33 36 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT R 32 R 32 30 41 41 11 24 29 33 36 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 33 C 33 30 41 41 13 24 29 33 36 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT S 34 S 34 30 41 41 7 21 29 33 36 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT D 35 D 35 30 41 41 3 7 20 31 36 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 36 T 36 6 41 41 5 6 6 31 35 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 37 K 37 6 41 41 5 6 6 9 29 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT Y 38 Y 38 6 41 41 5 6 22 31 36 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 39 T 39 6 41 41 5 6 6 24 29 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT L 40 L 40 6 41 41 5 6 6 7 26 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 41 C 41 6 41 41 3 6 6 31 36 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_AVERAGE LCS_A: 87.13 ( 61.39 100.00 100.00 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 13 24 29 33 36 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 GDT PERCENT_AT 31.71 58.54 70.73 80.49 87.80 95.12 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 GDT RMS_LOCAL 0.35 0.62 0.82 1.08 1.31 1.53 1.71 1.71 1.71 1.71 1.71 1.71 1.71 1.71 1.71 1.71 1.71 1.71 1.71 1.71 GDT RMS_ALL_AT 2.02 1.99 1.91 1.82 1.74 1.73 1.71 1.71 1.71 1.71 1.71 1.71 1.71 1.71 1.71 1.71 1.71 1.71 1.71 1.71 # Checking swapping # possible swapping detected: E 19 E 19 # possible swapping detected: E 24 E 24 # possible swapping detected: E 30 E 30 # possible swapping detected: Y 38 Y 38 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA S 1 S 1 1.454 0 0.142 0.189 3.977 45.000 42.727 2.370 LGA Q 2 Q 2 3.139 0 0.212 1.073 6.192 30.455 14.343 6.192 LGA E 3 E 3 1.967 0 0.051 1.187 6.851 47.727 27.677 4.708 LGA T 4 T 4 2.072 0 0.064 1.054 4.359 41.364 32.468 4.359 LGA R 5 R 5 2.166 0 0.043 1.361 10.081 48.182 20.992 10.081 LGA K 6 K 6 1.131 0 0.057 1.002 1.768 74.545 61.414 1.711 LGA K 7 K 7 0.464 0 0.049 0.921 3.852 86.818 67.475 3.852 LGA C 8 C 8 1.384 0 0.064 0.081 2.143 65.909 58.788 2.143 LGA T 9 T 9 0.764 0 0.054 0.097 1.003 81.818 79.481 1.003 LGA E 10 E 10 0.449 0 0.029 0.512 1.302 90.909 84.242 1.286 LGA M 11 M 11 0.734 0 0.062 0.214 1.129 81.818 79.773 1.129 LGA K 12 K 12 0.863 0 0.082 0.938 3.554 81.818 69.091 3.554 LGA K 13 K 13 1.044 0 0.037 0.598 2.762 73.636 60.202 1.160 LGA K 14 K 14 0.982 0 0.082 0.643 2.251 81.818 63.636 2.210 LGA F 15 F 15 0.451 0 0.149 0.338 1.029 95.455 91.901 0.558 LGA K 16 K 16 0.354 0 0.078 1.200 6.524 90.909 55.758 6.524 LGA N 17 N 17 0.793 0 0.032 0.252 1.122 81.818 77.727 1.043 LGA C 18 C 18 0.604 0 0.077 0.124 0.753 86.364 84.848 0.679 LGA E 19 E 19 0.527 0 0.235 1.043 4.320 81.818 62.222 3.137 LGA V 20 V 20 1.186 0 0.055 0.078 1.939 61.818 57.143 1.807 LGA R 21 R 21 1.736 0 0.070 1.394 5.333 61.818 41.488 5.333 LGA C 22 C 22 1.324 0 0.132 0.182 1.758 69.545 65.758 1.758 LGA D 23 D 23 1.514 0 0.295 1.291 4.856 48.636 37.727 2.695 LGA E 24 E 24 1.628 0 0.069 0.985 4.596 54.545 34.949 4.596 LGA S 25 S 25 1.740 0 0.081 0.092 2.353 47.727 53.636 1.234 LGA N 26 N 26 1.727 0 0.031 0.988 5.026 50.909 34.773 4.331 LGA H 27 H 27 1.307 0 0.060 0.165 1.470 65.455 65.455 1.057 LGA C 28 C 28 1.156 0 0.057 0.913 4.088 73.636 60.909 4.088 LGA V 29 V 29 0.517 0 0.062 0.096 0.861 81.818 81.818 0.591 LGA E 30 E 30 0.629 0 0.073 0.658 2.708 86.364 69.091 2.708 LGA V 31 V 31 0.773 0 0.068 0.134 1.235 77.727 82.078 0.405 LGA R 32 R 32 1.250 0 0.236 0.941 5.093 65.909 46.777 2.497 LGA C 33 C 33 1.045 0 0.476 0.583 3.455 53.636 63.030 0.657 LGA S 34 S 34 0.642 0 0.207 0.812 2.214 66.818 66.667 1.656 LGA D 35 D 35 2.382 0 0.086 1.108 4.279 41.818 33.636 4.279 LGA T 36 T 36 2.816 0 0.558 0.555 7.077 34.091 19.481 6.323 LGA K 37 K 37 3.643 0 0.125 1.615 12.333 20.455 9.091 12.333 LGA Y 38 Y 38 2.219 0 0.049 0.246 11.634 27.273 11.061 11.634 LGA T 39 T 39 3.637 0 0.138 1.006 6.993 19.091 10.909 6.993 LGA L 40 L 40 3.289 0 0.102 1.428 9.343 19.545 9.773 7.016 LGA C 41 C 41 2.445 0 0.052 0.091 6.585 30.455 17.922 6.585 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 41 164 164 100.00 335 335 100.00 41 41 SUMMARY(RMSD_GDC): 1.713 1.745 3.117 61.641 51.413 33.215 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 41 41 4.0 41 1.71 84.756 92.073 2.262 LGA_LOCAL RMSD: 1.713 Number of atoms: 41 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 1.713 Number of assigned atoms: 41 Std_ASGN_ATOMS RMSD: 1.713 Standard rmsd on all 41 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.887911 * X + 0.279520 * Y + -0.365352 * Z + -7.997219 Y_new = -0.241243 * X + -0.959182 * Y + -0.147551 * Z + 8.244866 Z_new = -0.391682 * X + -0.042874 * Y + 0.919101 * Z + 4.116291 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -2.876300 0.402459 -0.046614 [DEG: -164.7998 23.0592 -2.6708 ] ZXZ: -1.186967 0.405004 -1.679822 [DEG: -68.0082 23.2050 -96.2467 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0955TS221_1 REMARK 2: T0955.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS221_1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 41 41 4.0 41 1.71 92.073 1.71 REMARK ---------------------------------------------------------- MOLECULE T0955TS221_1 PFRMAT TS TARGET T0955 MODEL 1 PARENT 5kvnA ATOM 1 N SER 1 -1.859 -15.014 1.425 1.00 10.99 N ATOM 2 CA SER 1 -0.576 -14.691 0.764 1.00 10.99 C ATOM 3 CB SER 1 -0.808 -14.221 -0.682 1.00 10.99 C ATOM 4 OG SER 1 -1.311 -15.289 -1.470 1.00 10.99 O ATOM 5 C SER 1 0.111 -13.603 1.516 1.00 10.99 C ATOM 6 O SER 1 -0.225 -12.426 1.390 1.00 10.99 O ATOM 7 N GLN 2 1.106 -13.997 2.332 1.00 10.66 N ATOM 8 CA GLN 2 1.835 -13.069 3.140 1.00 10.66 C ATOM 9 CB GLN 2 2.870 -13.717 4.085 1.00 10.66 C ATOM 10 CG GLN 2 2.290 -14.599 5.193 1.00 10.66 C ATOM 11 CD GLN 2 2.479 -16.056 4.796 1.00 10.66 C ATOM 12 OE1 GLN 2 1.740 -16.603 3.980 1.00 10.66 O ATOM 13 NE2 GLN 2 3.523 -16.702 5.386 1.00 10.66 N ATOM 14 C GLN 2 2.602 -12.160 2.243 1.00 10.66 C ATOM 15 O GLN 2 2.800 -10.990 2.558 1.00 10.66 O ATOM 16 N GLU 3 3.053 -12.676 1.085 1.00 8.39 N ATOM 17 CA GLU 3 3.901 -11.891 0.239 1.00 8.39 C ATOM 18 CB GLU 3 4.306 -12.601 -1.065 1.00 8.39 C ATOM 19 CG GLU 3 5.180 -13.836 -0.834 1.00 8.39 C ATOM 20 CD GLU 3 5.722 -14.299 -2.179 1.00 8.39 C ATOM 21 OE1 GLU 3 6.514 -13.532 -2.788 1.00 8.39 O ATOM 22 OE2 GLU 3 5.349 -15.420 -2.617 1.00 8.39 O ATOM 23 C GLU 3 3.200 -10.620 -0.131 1.00 8.39 C ATOM 24 O GLU 3 3.836 -9.574 -0.213 1.00 8.39 O ATOM 25 N THR 4 1.888 -10.679 -0.421 1.00 9.12 N ATOM 26 CA THR 4 1.109 -9.513 -0.747 1.00 9.12 C ATOM 27 CB THR 4 -0.184 -9.866 -1.422 1.00 9.12 C ATOM 28 OG1 THR 4 -0.984 -10.676 -0.575 1.00 9.12 O ATOM 29 CG2 THR 4 0.144 -10.616 -2.726 1.00 9.12 C ATOM 30 C THR 4 0.809 -8.710 0.482 1.00 9.12 C ATOM 31 O THR 4 0.725 -7.484 0.424 1.00 9.12 O ATOM 32 N ARG 5 0.629 -9.401 1.627 1.00 9.26 N ATOM 33 CA ARG 5 0.248 -8.772 2.860 1.00 9.26 C ATOM 34 CB ARG 5 0.082 -9.761 4.030 1.00 9.26 C ATOM 35 CG ARG 5 -0.267 -9.049 5.340 1.00 9.26 C ATOM 36 CD ARG 5 0.924 -8.819 6.283 1.00 9.26 C ATOM 37 NE ARG 5 1.105 -10.050 7.107 1.00 9.26 N ATOM 38 CZ ARG 5 1.879 -11.093 6.676 1.00 9.26 C ATOM 39 NH1 ARG 5 2.523 -11.042 5.474 1.00 9.26 N ATOM 40 NH2 ARG 5 2.022 -12.199 7.461 1.00 9.26 N ATOM 41 C ARG 5 1.303 -7.808 3.286 1.00 9.26 C ATOM 42 O ARG 5 0.997 -6.727 3.787 1.00 9.26 O ATOM 43 N LYS 6 2.579 -8.167 3.081 1.00 8.25 N ATOM 44 CA LYS 6 3.669 -7.360 3.538 1.00 8.25 C ATOM 45 CB LYS 6 5.040 -8.004 3.240 1.00 8.25 C ATOM 46 CG LYS 6 5.285 -8.322 1.764 1.00 8.25 C ATOM 47 CD LYS 6 6.655 -8.951 1.471 1.00 8.25 C ATOM 48 CE LYS 6 7.753 -8.567 2.462 1.00 8.25 C ATOM 49 NZ LYS 6 7.841 -9.580 3.539 1.00 8.25 N ATOM 50 C LYS 6 3.581 -6.004 2.916 1.00 8.25 C ATOM 51 O LYS 6 3.893 -5.009 3.564 1.00 8.25 O ATOM 52 N LYS 7 3.147 -5.919 1.646 1.00 7.75 N ATOM 53 CA LYS 7 3.036 -4.650 0.985 1.00 7.75 C ATOM 54 CB LYS 7 2.578 -4.774 -0.474 1.00 7.75 C ATOM 55 CG LYS 7 3.698 -5.231 -1.402 1.00 7.75 C ATOM 56 CD LYS 7 4.868 -4.249 -1.407 1.00 7.75 C ATOM 57 CE LYS 7 6.023 -4.692 -2.300 1.00 7.75 C ATOM 58 NZ LYS 7 7.125 -3.708 -2.218 1.00 7.75 N ATOM 59 C LYS 7 2.024 -3.797 1.681 1.00 7.75 C ATOM 60 O LYS 7 2.232 -2.597 1.851 1.00 7.75 O ATOM 61 N CYS 8 0.897 -4.392 2.108 1.00 7.41 N ATOM 62 CA CYS 8 -0.132 -3.600 2.708 1.00 7.41 C ATOM 63 CB CYS 8 -1.392 -4.414 3.065 1.00 7.41 C ATOM 64 SG CYS 8 -2.756 -3.372 3.661 1.00 7.41 S ATOM 65 C CYS 8 0.425 -2.975 3.948 1.00 7.41 C ATOM 66 O CYS 8 0.100 -1.835 4.270 1.00 7.41 O ATOM 67 N THR 9 1.232 -3.724 4.719 1.00 6.62 N ATOM 68 CA THR 9 1.846 -3.200 5.907 1.00 6.62 C ATOM 69 CB THR 9 2.451 -4.296 6.737 1.00 6.62 C ATOM 70 OG1 THR 9 1.454 -5.231 7.118 1.00 6.62 O ATOM 71 CG2 THR 9 3.095 -3.682 7.987 1.00 6.62 C ATOM 72 C THR 9 2.944 -2.215 5.587 1.00 6.62 C ATOM 73 O THR 9 2.939 -1.085 6.076 1.00 6.62 O ATOM 74 N GLU 10 3.896 -2.620 4.718 1.00 6.58 N ATOM 75 CA GLU 10 5.095 -1.867 4.440 1.00 6.58 C ATOM 76 CB GLU 10 6.047 -2.586 3.471 1.00 6.58 C ATOM 77 CG GLU 10 7.303 -1.768 3.158 1.00 6.58 C ATOM 78 CD GLU 10 8.029 -2.451 2.011 1.00 6.58 C ATOM 79 OE1 GLU 10 7.603 -3.576 1.636 1.00 6.58 O ATOM 80 OE2 GLU 10 9.014 -1.861 1.492 1.00 6.58 O ATOM 81 C GLU 10 4.789 -0.555 3.802 1.00 6.58 C ATOM 82 O GLU 10 5.363 0.471 4.167 1.00 6.58 O ATOM 83 N MET 11 3.864 -0.551 2.831 1.00 5.67 N ATOM 84 CA MET 11 3.576 0.657 2.126 1.00 5.67 C ATOM 85 CB MET 11 2.577 0.465 0.970 1.00 5.67 C ATOM 86 CG MET 11 3.131 -0.406 -0.164 1.00 5.67 C ATOM 87 SD MET 11 4.624 0.249 -0.979 1.00 5.67 S ATOM 88 CE MET 11 5.800 -0.269 0.307 1.00 5.67 C ATOM 89 C MET 11 3.027 1.661 3.089 1.00 5.67 C ATOM 90 O MET 11 3.324 2.847 2.979 1.00 5.67 O ATOM 91 N LYS 12 2.204 1.221 4.060 1.00 4.71 N ATOM 92 CA LYS 12 1.639 2.148 5.001 1.00 4.71 C ATOM 93 CB LYS 12 0.723 1.474 6.035 1.00 4.71 C ATOM 94 CG LYS 12 -0.645 1.032 5.512 1.00 4.71 C ATOM 95 CD LYS 12 -1.396 0.136 6.503 1.00 4.71 C ATOM 96 CE LYS 12 -2.912 0.093 6.296 1.00 4.71 C ATOM 97 NZ LYS 12 -3.227 -0.437 4.955 1.00 4.71 N ATOM 98 C LYS 12 2.740 2.779 5.791 1.00 4.71 C ATOM 99 O LYS 12 2.758 3.992 5.988 1.00 4.71 O ATOM 100 N LYS 13 3.684 1.959 6.287 1.00 4.48 N ATOM 101 CA LYS 13 4.754 2.489 7.075 1.00 4.48 C ATOM 102 CB LYS 13 5.606 1.393 7.730 1.00 4.48 C ATOM 103 CG LYS 13 4.885 0.715 8.894 1.00 4.48 C ATOM 104 CD LYS 13 5.574 -0.548 9.405 1.00 4.48 C ATOM 105 CE LYS 13 4.887 -1.155 10.631 1.00 4.48 C ATOM 106 NZ LYS 13 5.571 -2.405 11.027 1.00 4.48 N ATOM 107 C LYS 13 5.636 3.351 6.230 1.00 4.48 C ATOM 108 O LYS 13 6.017 4.443 6.644 1.00 4.48 O ATOM 109 N LYS 14 5.981 2.887 5.014 1.00 4.87 N ATOM 110 CA LYS 14 6.866 3.636 4.174 1.00 4.87 C ATOM 111 CB LYS 14 7.198 2.906 2.864 1.00 4.87 C ATOM 112 CG LYS 14 7.982 1.612 3.080 1.00 4.87 C ATOM 113 CD LYS 14 9.324 1.834 3.778 1.00 4.87 C ATOM 114 CE LYS 14 10.118 0.551 4.034 1.00 4.87 C ATOM 115 NZ LYS 14 9.326 -0.373 4.875 1.00 4.87 N ATOM 116 C LYS 14 6.225 4.932 3.792 1.00 4.87 C ATOM 117 O LYS 14 6.855 5.984 3.873 1.00 4.87 O ATOM 118 N PHE 15 4.946 4.893 3.365 1.00 2.18 N ATOM 119 CA PHE 15 4.323 6.111 2.933 1.00 2.18 C ATOM 120 CB PHE 15 3.691 5.981 1.534 1.00 2.18 C ATOM 121 CG PHE 15 4.749 5.565 0.567 1.00 2.18 C ATOM 122 CD1 PHE 15 5.066 4.234 0.416 1.00 2.18 C ATOM 123 CD2 PHE 15 5.421 6.490 -0.200 1.00 2.18 C ATOM 124 CE1 PHE 15 6.037 3.830 -0.472 1.00 2.18 C ATOM 125 CE2 PHE 15 6.394 6.094 -1.089 1.00 2.18 C ATOM 126 CZ PHE 15 6.704 4.762 -1.228 1.00 2.18 C ATOM 127 C PHE 15 3.190 6.432 3.862 1.00 2.18 C ATOM 128 O PHE 15 2.028 6.179 3.543 1.00 2.18 O ATOM 129 N LYS 16 3.496 7.039 5.025 1.00 1.36 N ATOM 130 CA LYS 16 2.485 7.378 5.988 1.00 1.36 C ATOM 131 CB LYS 16 3.056 7.775 7.360 1.00 1.36 C ATOM 132 CG LYS 16 3.565 6.552 8.122 1.00 1.36 C ATOM 133 CD LYS 16 2.478 5.488 8.298 1.00 1.36 C ATOM 134 CE LYS 16 2.970 4.168 8.894 1.00 1.36 C ATOM 135 NZ LYS 16 1.847 3.207 8.970 1.00 1.36 N ATOM 136 C LYS 16 1.614 8.486 5.475 1.00 1.36 C ATOM 137 O LYS 16 0.426 8.552 5.789 1.00 1.36 O ATOM 138 N ASN 17 2.205 9.414 4.704 1.00 1.04 N ATOM 139 CA ASN 17 1.519 10.553 4.158 1.00 1.04 C ATOM 140 CB ASN 17 2.478 11.624 3.607 1.00 1.04 C ATOM 141 CG ASN 17 3.051 12.365 4.808 1.00 1.04 C ATOM 142 OD1 ASN 17 2.302 12.911 5.615 1.00 1.04 O ATOM 143 ND2 ASN 17 4.406 12.387 4.938 1.00 1.04 N ATOM 144 C ASN 17 0.557 10.160 3.072 1.00 1.04 C ATOM 145 O ASN 17 -0.417 10.865 2.810 1.00 1.04 O ATOM 146 N CYS 18 0.814 9.036 2.377 1.00 1.36 N ATOM 147 CA CYS 18 -0.029 8.724 1.262 1.00 1.36 C ATOM 148 CB CYS 18 0.763 8.145 0.083 1.00 1.36 C ATOM 149 SG CYS 18 2.141 9.258 -0.333 1.00 1.36 S ATOM 150 C CYS 18 -1.115 7.779 1.674 1.00 1.36 C ATOM 151 O CYS 18 -1.139 7.293 2.803 1.00 1.36 O ATOM 152 N GLU 19 -2.086 7.548 0.762 1.00 1.66 N ATOM 153 CA GLU 19 -3.192 6.673 1.031 1.00 1.66 C ATOM 154 CB GLU 19 -4.510 7.146 0.386 1.00 1.66 C ATOM 155 CG GLU 19 -5.744 6.476 0.985 1.00 1.66 C ATOM 156 CD GLU 19 -5.944 7.122 2.344 1.00 1.66 C ATOM 157 OE1 GLU 19 -5.932 8.380 2.401 1.00 1.66 O ATOM 158 OE2 GLU 19 -6.105 6.373 3.344 1.00 1.66 O ATOM 159 C GLU 19 -2.850 5.347 0.426 1.00 1.66 C ATOM 160 O GLU 19 -2.465 5.266 -0.739 1.00 1.66 O ATOM 161 N VAL 20 -2.981 4.259 1.212 1.00 1.81 N ATOM 162 CA VAL 20 -2.627 2.965 0.713 1.00 1.81 C ATOM 163 CB VAL 20 -1.783 2.184 1.678 1.00 1.81 C ATOM 164 CG1 VAL 20 -1.560 0.781 1.096 1.00 1.81 C ATOM 165 CG2 VAL 20 -0.481 2.957 1.943 1.00 1.81 C ATOM 166 C VAL 20 -3.887 2.192 0.513 1.00 1.81 C ATOM 167 O VAL 20 -4.643 1.959 1.455 1.00 1.81 O ATOM 168 N ARG 21 -4.140 1.749 -0.730 1.00 1.98 N ATOM 169 CA ARG 21 -5.340 1.006 -0.944 1.00 1.98 C ATOM 170 CB ARG 21 -6.074 1.406 -2.231 1.00 1.98 C ATOM 171 CG ARG 21 -7.428 0.723 -2.413 1.00 1.98 C ATOM 172 CD ARG 21 -8.159 1.204 -3.665 1.00 1.98 C ATOM 173 NE ARG 21 -7.213 1.051 -4.806 1.00 1.98 N ATOM 174 CZ ARG 21 -7.128 -0.148 -5.456 1.00 1.98 C ATOM 175 NH1 ARG 21 -7.914 -1.191 -5.072 1.00 1.98 N ATOM 176 NH2 ARG 21 -6.242 -0.308 -6.483 1.00 1.98 N ATOM 177 C ARG 21 -4.951 -0.429 -1.045 1.00 1.98 C ATOM 178 O ARG 21 -4.268 -0.843 -1.982 1.00 1.98 O ATOM 179 N CYS 22 -5.378 -1.247 -0.068 1.00 1.86 N ATOM 180 CA CYS 22 -4.996 -2.624 -0.122 1.00 1.86 C ATOM 181 CB CYS 22 -4.621 -3.204 1.256 1.00 1.86 C ATOM 182 SG CYS 22 -3.268 -2.269 2.036 1.00 1.86 S ATOM 183 C CYS 22 -6.159 -3.392 -0.656 1.00 1.86 C ATOM 184 O CYS 22 -7.224 -3.438 -0.041 1.00 1.86 O ATOM 185 N ASP 23 -5.979 -4.012 -1.838 1.00 2.34 N ATOM 186 CA ASP 23 -7.045 -4.771 -2.423 1.00 2.34 C ATOM 187 CB ASP 23 -7.170 -4.550 -3.942 1.00 2.34 C ATOM 188 CG ASP 23 -8.452 -5.207 -4.425 1.00 2.34 C ATOM 189 OD1 ASP 23 -9.112 -5.905 -3.609 1.00 2.34 O ATOM 190 OD2 ASP 23 -8.787 -5.022 -5.624 1.00 2.34 O ATOM 191 C ASP 23 -6.720 -6.208 -2.180 1.00 2.34 C ATOM 192 O ASP 23 -5.872 -6.787 -2.854 1.00 2.34 O ATOM 193 N GLU 24 -7.376 -6.822 -1.181 1.00 2.80 N ATOM 194 CA GLU 24 -7.089 -8.186 -0.844 1.00 2.80 C ATOM 195 CB GLU 24 -7.882 -8.692 0.375 1.00 2.80 C ATOM 196 CG GLU 24 -7.613 -7.945 1.683 1.00 2.80 C ATOM 197 CD GLU 24 -8.664 -6.851 1.821 1.00 2.80 C ATOM 198 OE1 GLU 24 -9.786 -7.172 2.297 1.00 2.80 O ATOM 199 OE2 GLU 24 -8.366 -5.685 1.446 1.00 2.80 O ATOM 200 C GLU 24 -7.500 -9.076 -1.976 1.00 2.80 C ATOM 201 O GLU 24 -6.817 -10.048 -2.299 1.00 2.80 O ATOM 202 N SER 25 -8.641 -8.752 -2.609 1.00 2.49 N ATOM 203 CA SER 25 -9.229 -9.571 -3.631 1.00 2.49 C ATOM 204 CB SER 25 -10.425 -8.855 -4.283 1.00 2.49 C ATOM 205 OG SER 25 -11.341 -8.416 -3.290 1.00 2.49 O ATOM 206 C SER 25 -8.221 -9.779 -4.720 1.00 2.49 C ATOM 207 O SER 25 -7.887 -10.909 -5.070 1.00 2.49 O ATOM 208 N ASN 26 -7.765 -8.657 -5.306 1.00 3.90 N ATOM 209 CA ASN 26 -6.825 -8.578 -6.391 1.00 3.90 C ATOM 210 CB ASN 26 -6.922 -7.249 -7.157 1.00 3.90 C ATOM 211 CG ASN 26 -8.255 -7.242 -7.894 1.00 3.90 C ATOM 212 OD1 ASN 26 -8.611 -6.262 -8.544 1.00 3.90 O ATOM 213 ND2 ASN 26 -9.017 -8.365 -7.793 1.00 3.90 N ATOM 214 C ASN 26 -5.402 -8.759 -5.938 1.00 3.90 C ATOM 215 O ASN 26 -4.540 -9.115 -6.738 1.00 3.90 O ATOM 216 N HIS 27 -5.101 -8.517 -4.649 1.00 3.00 N ATOM 217 CA HIS 27 -3.741 -8.537 -4.173 1.00 3.00 C ATOM 218 ND1 HIS 27 -3.072 -11.697 -2.861 1.00 3.00 N ATOM 219 CG HIS 27 -3.495 -11.110 -4.035 1.00 3.00 C ATOM 220 CB HIS 27 -2.965 -9.812 -4.575 1.00 3.00 C ATOM 221 NE2 HIS 27 -4.588 -13.069 -3.737 1.00 3.00 N ATOM 222 CD2 HIS 27 -4.423 -11.965 -4.556 1.00 3.00 C ATOM 223 CE1 HIS 27 -3.755 -12.862 -2.732 1.00 3.00 C ATOM 224 C HIS 27 -2.981 -7.391 -4.791 1.00 3.00 C ATOM 225 O HIS 27 -1.808 -7.532 -5.139 1.00 3.00 O ATOM 226 N CYS 28 -3.618 -6.210 -4.950 1.00 2.14 N ATOM 227 CA CYS 28 -2.871 -5.112 -5.497 1.00 2.14 C ATOM 228 CB CYS 28 -3.427 -4.552 -6.816 1.00 2.14 C ATOM 229 SG CYS 28 -4.891 -3.505 -6.585 1.00 2.14 S ATOM 230 C CYS 28 -2.865 -3.992 -4.500 1.00 2.14 C ATOM 231 O CYS 28 -3.888 -3.661 -3.902 1.00 2.14 O ATOM 232 N VAL 29 -1.687 -3.374 -4.280 1.00 2.76 N ATOM 233 CA VAL 29 -1.636 -2.289 -3.343 1.00 2.76 C ATOM 234 CB VAL 29 -0.561 -2.449 -2.310 1.00 2.76 C ATOM 235 CG1 VAL 29 -0.595 -1.217 -1.391 1.00 2.76 C ATOM 236 CG2 VAL 29 -0.760 -3.792 -1.584 1.00 2.76 C ATOM 237 C VAL 29 -1.321 -1.044 -4.113 1.00 2.76 C ATOM 238 O VAL 29 -0.307 -0.974 -4.804 1.00 2.76 O ATOM 239 N GLU 30 -2.188 -0.016 -4.014 1.00 2.25 N ATOM 240 CA GLU 30 -1.912 1.201 -4.723 1.00 2.25 C ATOM 241 CB GLU 30 -3.071 1.676 -5.618 1.00 2.25 C ATOM 242 CG GLU 30 -2.751 2.970 -6.372 1.00 2.25 C ATOM 243 CD GLU 30 -3.962 3.363 -7.206 1.00 2.25 C ATOM 244 OE1 GLU 30 -4.992 2.639 -7.149 1.00 2.25 O ATOM 245 OE2 GLU 30 -3.874 4.402 -7.912 1.00 2.25 O ATOM 246 C GLU 30 -1.662 2.277 -3.715 1.00 2.25 C ATOM 247 O GLU 30 -2.478 2.512 -2.825 1.00 2.25 O ATOM 248 N VAL 31 -0.511 2.967 -3.823 1.00 1.94 N ATOM 249 CA VAL 31 -0.248 4.011 -2.876 1.00 1.94 C ATOM 250 CB VAL 31 1.154 3.981 -2.333 1.00 1.94 C ATOM 251 CG1 VAL 31 1.365 5.214 -1.440 1.00 1.94 C ATOM 252 CG2 VAL 31 1.373 2.642 -1.605 1.00 1.94 C ATOM 253 C VAL 31 -0.432 5.302 -3.602 1.00 1.94 C ATOM 254 O VAL 31 0.262 5.588 -4.575 1.00 1.94 O ATOM 255 N ARG 32 -1.385 6.131 -3.135 1.00 1.48 N ATOM 256 CA ARG 32 -1.622 7.360 -3.830 1.00 1.48 C ATOM 257 CB ARG 32 -3.052 7.500 -4.371 1.00 1.48 C ATOM 258 CG ARG 32 -4.119 7.379 -3.290 1.00 1.48 C ATOM 259 CD ARG 32 -4.888 6.062 -3.348 1.00 1.48 C ATOM 260 NE ARG 32 -5.712 6.089 -4.588 1.00 1.48 N ATOM 261 CZ ARG 32 -6.096 4.921 -5.173 1.00 1.48 C ATOM 262 NH1 ARG 32 -5.709 3.729 -4.632 1.00 1.48 N ATOM 263 NH2 ARG 32 -6.848 4.943 -6.313 1.00 1.48 N ATOM 264 C ARG 32 -1.358 8.505 -2.911 1.00 1.48 C ATOM 265 O ARG 32 -1.686 8.473 -1.728 1.00 1.48 O ATOM 266 N CYS 33 -0.751 9.575 -3.457 1.00 2.35 N ATOM 267 CA CYS 33 -0.400 10.691 -2.633 1.00 2.35 C ATOM 268 CB CYS 33 1.114 10.954 -2.648 1.00 2.35 C ATOM 269 SG CYS 33 2.075 9.437 -2.353 1.00 2.35 S ATOM 270 C CYS 33 -1.095 11.895 -3.193 1.00 2.35 C ATOM 271 O CYS 33 -1.719 11.832 -4.252 1.00 2.35 O ATOM 272 N SER 34 -1.008 13.032 -2.475 1.00 4.41 N ATOM 273 CA SER 34 -1.664 14.249 -2.879 1.00 4.41 C ATOM 274 CB SER 34 -1.576 15.357 -1.826 1.00 4.41 C ATOM 275 OG SER 34 -2.243 16.511 -2.311 1.00 4.41 O ATOM 276 C SER 34 -1.045 14.793 -4.135 1.00 4.41 C ATOM 277 O SER 34 -1.703 15.497 -4.903 1.00 4.41 O ATOM 278 N ASP 35 0.243 14.478 -4.366 1.00 5.49 N ATOM 279 CA ASP 35 1.003 14.951 -5.492 1.00 5.49 C ATOM 280 CB ASP 35 2.507 14.661 -5.374 1.00 5.49 C ATOM 281 CG ASP 35 3.052 15.634 -4.333 1.00 5.49 C ATOM 282 OD1 ASP 35 2.635 16.825 -4.370 1.00 5.49 O ATOM 283 OD2 ASP 35 3.875 15.202 -3.484 1.00 5.49 O ATOM 284 C ASP 35 0.461 14.348 -6.751 1.00 5.49 C ATOM 285 O ASP 35 0.785 14.812 -7.844 1.00 5.49 O ATOM 286 N THR 36 -0.376 13.299 -6.615 1.00 7.91 N ATOM 287 CA THR 36 -0.981 12.579 -7.707 1.00 7.91 C ATOM 288 CB THR 36 -1.374 13.482 -8.850 1.00 7.91 C ATOM 289 OG1 THR 36 -2.238 14.500 -8.368 1.00 7.91 O ATOM 290 CG2 THR 36 -2.097 12.685 -9.947 1.00 7.91 C ATOM 291 C THR 36 -0.014 11.535 -8.199 1.00 7.91 C ATOM 292 O THR 36 -0.291 10.800 -9.145 1.00 7.91 O ATOM 293 N LYS 37 1.142 11.387 -7.528 1.00 4.84 N ATOM 294 CA LYS 37 2.019 10.318 -7.913 1.00 4.84 C ATOM 295 CB LYS 37 3.499 10.575 -7.586 1.00 4.84 C ATOM 296 CG LYS 37 4.136 11.679 -8.432 1.00 4.84 C ATOM 297 CD LYS 37 5.494 12.146 -7.904 1.00 4.84 C ATOM 298 CE LYS 37 6.239 13.066 -8.873 1.00 4.84 C ATOM 299 NZ LYS 37 6.699 12.296 -10.051 1.00 4.84 N ATOM 300 C LYS 37 1.594 9.115 -7.121 1.00 4.84 C ATOM 301 O LYS 37 1.172 9.242 -5.975 1.00 4.84 O ATOM 302 N TYR 38 1.668 7.907 -7.721 1.00 5.63 N ATOM 303 CA TYR 38 1.268 6.748 -6.973 1.00 5.63 C ATOM 304 CB TYR 38 -0.202 6.349 -7.196 1.00 5.63 C ATOM 305 CG TYR 38 -0.349 6.007 -8.632 1.00 5.63 C ATOM 306 CD1 TYR 38 -0.640 6.987 -9.552 1.00 5.63 C ATOM 307 CD2 TYR 38 -0.180 4.714 -9.058 1.00 5.63 C ATOM 308 CE1 TYR 38 -0.771 6.676 -10.883 1.00 5.63 C ATOM 309 CE2 TYR 38 -0.312 4.400 -10.389 1.00 5.63 C ATOM 310 CZ TYR 38 -0.604 5.381 -11.305 1.00 5.63 C ATOM 311 OH TYR 38 -0.738 5.054 -12.670 1.00 5.63 O ATOM 312 C TYR 38 2.143 5.582 -7.322 1.00 5.63 C ATOM 313 O TYR 38 2.832 5.573 -8.343 1.00 5.63 O ATOM 314 N THR 39 2.138 4.557 -6.443 1.00 4.35 N ATOM 315 CA THR 39 2.917 3.374 -6.661 1.00 4.35 C ATOM 316 CB THR 39 3.831 3.043 -5.505 1.00 4.35 C ATOM 317 OG1 THR 39 4.747 2.024 -5.871 1.00 4.35 O ATOM 318 CG2 THR 39 2.995 2.589 -4.299 1.00 4.35 C ATOM 319 C THR 39 1.952 2.247 -6.862 1.00 4.35 C ATOM 320 O THR 39 0.993 2.088 -6.107 1.00 4.35 O ATOM 321 N LEU 40 2.169 1.434 -7.916 1.00 6.20 N ATOM 322 CA LEU 40 1.242 0.372 -8.148 1.00 6.20 C ATOM 323 CB LEU 40 0.762 0.296 -9.611 1.00 6.20 C ATOM 324 CG LEU 40 -0.445 -0.639 -9.848 1.00 6.20 C ATOM 325 CD1 LEU 40 -0.133 -2.101 -9.493 1.00 6.20 C ATOM 326 CD2 LEU 40 -1.716 -0.108 -9.166 1.00 6.20 C ATOM 327 C LEU 40 1.960 -0.899 -7.822 1.00 6.20 C ATOM 328 O LEU 40 3.034 -1.174 -8.351 1.00 6.20 O ATOM 329 N CYS 41 1.369 -1.716 -6.928 1.00 5.50 N ATOM 330 CA CYS 41 1.990 -2.956 -6.566 1.00 5.50 C ATOM 331 CB CYS 41 2.234 -3.101 -5.052 1.00 5.50 C ATOM 332 SG CYS 41 3.434 -1.897 -4.406 1.00 5.50 S ATOM 333 C CYS 41 1.020 -4.057 -6.969 1.00 5.50 C ATOM 334 O CYS 41 1.214 -4.644 -8.068 1.00 5.50 O ATOM 335 OXT CYS 41 0.073 -4.327 -6.182 1.00 5.50 O TER END