####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 41 ( 334), selected 41 , name T0955TS164_1 # Molecule2: number of CA atoms 41 ( 665), selected 41 , name T0955.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS164_1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 41 1 - 41 2.56 2.56 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 34 1 - 34 2.00 2.86 LCS_AVERAGE: 74.54 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 15 2 - 16 0.77 4.87 LCS_AVERAGE: 22.78 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 41 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 1 S 1 3 34 41 3 3 6 9 24 29 35 39 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT Q 2 Q 2 15 34 41 7 13 17 24 28 30 35 39 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 3 E 3 15 34 41 12 13 17 24 28 30 35 39 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 4 T 4 15 34 41 12 13 18 26 28 31 35 39 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT R 5 R 5 15 34 41 12 13 19 26 28 31 35 39 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 6 K 6 15 34 41 12 13 19 26 28 31 35 39 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 7 K 7 15 34 41 12 13 19 26 28 31 35 39 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 8 C 8 15 34 41 12 13 19 26 28 31 35 39 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 9 T 9 15 34 41 12 13 19 26 28 31 35 39 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 10 E 10 15 34 41 12 13 19 26 28 31 35 39 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT M 11 M 11 15 34 41 12 13 19 26 28 31 35 39 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 12 K 12 15 34 41 12 13 19 26 28 31 35 39 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 13 K 13 15 34 41 12 13 19 26 28 31 35 39 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 14 K 14 15 34 41 12 13 19 26 28 31 35 39 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT F 15 F 15 15 34 41 8 13 19 26 28 31 35 39 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 16 K 16 15 34 41 3 4 13 23 28 30 35 39 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT N 17 N 17 4 34 41 3 8 17 26 28 31 35 39 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 18 C 18 4 34 41 3 11 19 26 28 31 35 39 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 19 E 19 4 34 41 3 11 19 26 28 31 35 39 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT V 20 V 20 5 34 41 3 5 17 26 28 31 35 39 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT R 21 R 21 5 34 41 3 4 15 17 26 30 35 39 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 22 C 22 5 34 41 3 4 11 20 26 31 35 39 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT D 23 D 23 5 34 41 5 11 19 26 28 31 35 39 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 24 E 24 5 34 41 3 4 6 7 22 29 35 39 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT S 25 S 25 5 34 41 5 11 19 26 28 31 35 39 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT N 26 N 26 4 34 41 3 5 9 22 27 30 33 35 39 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT H 27 H 27 8 34 41 4 11 19 26 28 31 35 39 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 28 C 28 8 34 41 3 8 19 26 28 31 35 39 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT V 29 V 29 8 34 41 6 9 19 26 28 31 35 39 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 30 E 30 8 34 41 6 11 19 26 28 31 35 39 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT V 31 V 31 8 34 41 6 11 19 26 28 31 35 39 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT R 32 R 32 8 34 41 6 11 19 26 28 31 35 39 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 33 C 33 8 34 41 6 11 19 26 28 31 35 39 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT S 34 S 34 8 34 41 6 11 18 26 28 31 35 39 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT D 35 D 35 7 14 41 3 6 11 20 26 31 35 39 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 36 T 36 7 14 41 3 6 11 20 27 31 35 39 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 37 K 37 7 14 41 3 6 10 20 27 31 35 39 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT Y 38 Y 38 6 14 41 3 5 8 14 26 31 35 39 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 39 T 39 6 14 41 3 5 7 15 26 30 35 39 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT L 40 L 40 6 14 41 3 5 7 14 26 30 35 39 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 41 C 41 6 13 41 3 3 6 10 17 28 35 39 40 41 41 41 41 41 41 41 41 41 41 41 LCS_AVERAGE LCS_A: 65.77 ( 22.78 74.54 100.00 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 12 13 19 26 28 31 35 39 40 41 41 41 41 41 41 41 41 41 41 41 GDT PERCENT_AT 29.27 31.71 46.34 63.41 68.29 75.61 85.37 95.12 97.56 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 GDT RMS_LOCAL 0.30 0.37 1.04 1.32 1.48 1.89 2.15 2.40 2.47 2.56 2.56 2.56 2.56 2.56 2.56 2.56 2.56 2.56 2.56 2.56 GDT RMS_ALL_AT 5.43 5.24 2.81 2.76 2.82 2.63 2.64 2.57 2.57 2.56 2.56 2.56 2.56 2.56 2.56 2.56 2.56 2.56 2.56 2.56 # Checking swapping # possible swapping detected: E 19 E 19 # possible swapping detected: Y 38 Y 38 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA S 1 S 1 3.923 0 0.618 0.956 7.298 8.182 5.758 7.298 LGA Q 2 Q 2 3.446 0 0.253 1.090 3.560 21.364 25.455 1.876 LGA E 3 E 3 3.360 0 0.085 1.157 7.539 22.727 10.707 5.904 LGA T 4 T 4 2.619 0 0.049 1.082 4.992 39.091 33.766 4.992 LGA R 5 R 5 0.814 0 0.045 0.998 3.046 82.273 69.752 3.046 LGA K 6 K 6 1.378 0 0.055 0.650 6.276 69.545 37.172 6.276 LGA K 7 K 7 1.737 0 0.068 0.647 5.836 50.909 27.071 5.836 LGA C 8 C 8 1.557 0 0.040 0.752 4.840 61.818 50.000 4.840 LGA T 9 T 9 1.015 0 0.035 0.106 1.818 73.636 68.052 1.462 LGA E 10 E 10 0.376 0 0.037 0.644 4.558 100.000 55.152 4.265 LGA M 11 M 11 1.393 0 0.074 0.616 2.827 62.273 50.455 2.827 LGA K 12 K 12 2.286 0 0.066 0.627 4.135 38.636 29.293 4.135 LGA K 13 K 13 1.716 0 0.062 0.571 3.742 54.545 42.626 2.337 LGA K 14 K 14 0.877 0 0.074 0.613 1.686 70.000 69.495 1.319 LGA F 15 F 15 2.188 0 0.466 0.504 4.645 27.273 28.926 4.053 LGA K 16 K 16 3.178 0 0.564 1.254 8.576 18.636 9.091 8.576 LGA N 17 N 17 2.245 0 0.337 0.601 5.314 51.364 32.727 5.314 LGA C 18 C 18 1.478 0 0.123 0.109 1.618 61.818 63.030 1.391 LGA E 19 E 19 1.606 0 0.273 0.781 2.043 58.182 59.394 2.043 LGA V 20 V 20 2.366 0 0.412 0.972 6.079 33.182 19.221 5.815 LGA R 21 R 21 3.785 0 0.425 0.903 13.103 28.636 10.413 13.103 LGA C 22 C 22 3.002 0 0.088 0.825 8.411 43.182 28.788 8.411 LGA D 23 D 23 1.015 0 0.669 1.394 7.719 55.000 28.864 6.171 LGA E 24 E 24 3.218 0 0.094 0.653 8.826 29.545 13.131 7.940 LGA S 25 S 25 1.901 0 0.652 0.835 5.046 49.545 36.061 5.046 LGA N 26 N 26 5.141 0 0.491 1.300 10.544 6.364 3.182 9.245 LGA H 27 H 27 1.458 0 0.406 1.237 8.829 43.182 21.273 8.829 LGA C 28 C 28 1.791 0 0.032 0.062 5.381 63.182 43.939 5.381 LGA V 29 V 29 1.791 0 0.108 0.157 3.673 37.727 31.948 3.372 LGA E 30 E 30 1.414 0 0.068 0.654 2.149 65.455 60.808 2.149 LGA V 31 V 31 1.619 0 0.041 0.072 2.073 58.182 53.247 1.876 LGA R 32 R 32 0.863 0 0.154 1.232 3.556 69.545 54.545 1.654 LGA C 33 C 33 1.069 0 0.541 0.641 3.103 53.636 57.576 1.328 LGA S 34 S 34 1.614 0 0.159 0.728 3.122 54.545 47.879 1.658 LGA D 35 D 35 3.648 0 0.101 1.201 6.901 16.818 8.636 6.901 LGA T 36 T 36 2.753 0 0.592 0.600 3.694 30.455 25.455 3.694 LGA K 37 K 37 2.680 0 0.395 1.420 10.175 30.000 14.545 10.175 LGA Y 38 Y 38 3.611 0 0.344 1.158 4.984 16.364 21.515 4.984 LGA T 39 T 39 3.859 0 0.109 0.111 4.192 9.545 7.792 4.140 LGA L 40 L 40 4.030 0 0.601 1.261 6.097 4.545 25.682 2.430 LGA C 41 C 41 4.493 1 0.489 0.796 8.085 2.727 8.571 2.418 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 41 164 164 100.00 335 334 99.70 41 41 SUMMARY(RMSD_GDC): 2.565 2.587 3.806 43.259 33.927 18.492 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 41 41 4.0 39 2.40 72.561 76.882 1.562 LGA_LOCAL RMSD: 2.396 Number of atoms: 39 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 2.569 Number of assigned atoms: 41 Std_ASGN_ATOMS RMSD: 2.565 Standard rmsd on all 41 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.514238 * X + -0.340452 * Y + 0.787180 * Z + 1.746714 Y_new = 0.659587 * X + -0.429662 * Y + -0.616713 * Z + -6.687520 Z_new = 0.548182 * X + 0.836351 * Y + 0.003609 * Z + 9.847278 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 0.908596 -0.580190 1.566482 [DEG: 52.0587 -33.2424 89.7528 ] ZXZ: 0.906231 1.567188 0.580194 [DEG: 51.9232 89.7932 33.2427 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0955TS164_1 REMARK 2: T0955.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS164_1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 41 41 4.0 39 2.40 76.882 2.56 REMARK ---------------------------------------------------------- MOLECULE T0955TS164_1 PFRMAT TS TARGET T0955 MODEL 1 PARENT 2mfjA ATOM 2 N SER 1 -1.436 -14.479 2.215 1.00 4.90 ATOM 3 CA SER 1 -2.194 -13.232 2.199 1.00 4.90 ATOM 4 C SER 1 -1.525 -12.175 3.072 1.00 4.90 ATOM 5 O SER 1 -1.436 -11.014 2.676 1.00 4.90 ATOM 6 CB SER 1 -3.627 -13.471 2.679 1.00 4.90 ATOM 7 OG SER 1 -4.339 -12.244 2.716 1.00 4.90 ATOM 9 N GLN 2 -1.119 -12.677 4.160 1.00 3.12 ATOM 10 CA GLN 2 -0.447 -11.917 5.122 1.00 3.12 ATOM 11 C GLN 2 0.784 -11.394 4.622 1.00 3.12 ATOM 12 O GLN 2 1.127 -10.248 4.904 1.00 3.12 ATOM 13 CB GLN 2 -0.190 -12.765 6.371 1.00 3.12 ATOM 14 CG GLN 2 -1.494 -13.135 7.077 1.00 3.12 ATOM 15 CD GLN 2 -2.247 -11.888 7.527 1.00 3.12 ATOM 16 NE2 GLN 2 -2.496 -11.750 8.812 1.00 3.12 ATOM 17 OE1 GLN 2 -2.608 -11.045 6.720 1.00 3.12 ATOM 19 N GLU 3 1.563 -12.255 3.795 1.00 2.24 ATOM 20 CA GLU 3 2.709 -11.632 3.311 1.00 2.24 ATOM 21 C GLU 3 2.471 -10.491 2.471 1.00 2.24 ATOM 22 O GLU 3 3.160 -9.481 2.594 1.00 2.24 ATOM 23 CB GLU 3 3.539 -12.677 2.558 1.00 2.24 ATOM 24 CG GLU 3 4.862 -12.090 2.065 1.00 2.24 ATOM 25 CD GLU 3 5.685 -13.142 1.329 1.00 2.24 ATOM 26 OE1 GLU 3 6.778 -12.805 0.866 1.00 2.24 ATOM 27 OE2 GLU 3 5.213 -14.281 1.233 1.00 2.24 ATOM 29 N THR 4 1.410 -10.630 1.532 1.00 1.62 ATOM 30 CA THR 4 1.104 -9.491 0.743 1.00 1.62 ATOM 31 C THR 4 0.650 -8.313 1.495 1.00 1.62 ATOM 32 O THR 4 1.041 -7.191 1.180 1.00 1.62 ATOM 33 CB THR 4 0.038 -9.886 -0.297 1.00 1.62 ATOM 34 OG1 THR 4 0.555 -10.917 -1.126 1.00 1.62 ATOM 35 CG2 THR 4 -0.347 -8.698 -1.175 1.00 1.62 ATOM 37 N ARG 5 -0.140 -8.581 2.450 1.00 0.85 ATOM 38 CA ARG 5 -0.624 -7.485 3.267 1.00 0.85 ATOM 39 C ARG 5 0.431 -6.768 4.004 1.00 0.85 ATOM 40 O ARG 5 0.392 -5.544 4.101 1.00 0.85 ATOM 41 CB ARG 5 -1.670 -8.030 4.243 1.00 0.85 ATOM 42 CG ARG 5 -2.961 -8.422 3.525 1.00 0.85 ATOM 43 CD ARG 5 -3.957 -9.043 4.505 1.00 0.85 ATOM 44 NE ARG 5 -5.201 -9.404 3.792 1.00 0.85 ATOM 45 CZ ARG 5 -6.084 -10.246 4.296 1.00 0.85 ATOM 46 NH1 ARG 5 -7.181 -10.542 3.627 1.00 0.85 ATOM 47 NH2 ARG 5 -5.868 -10.793 5.473 1.00 0.85 ATOM 49 N LYS 6 1.399 -7.602 4.528 1.00 0.51 ATOM 50 CA LYS 6 2.525 -6.994 5.217 1.00 0.51 ATOM 51 C LYS 6 3.342 -6.126 4.381 1.00 0.51 ATOM 52 O LYS 6 3.763 -5.060 4.824 1.00 0.51 ATOM 53 CB LYS 6 3.386 -8.109 5.821 1.00 0.51 ATOM 54 CG LYS 6 4.546 -7.542 6.638 1.00 0.51 ATOM 55 CD LYS 6 5.385 -8.670 7.242 1.00 0.51 ATOM 56 CE LYS 6 6.552 -8.103 8.048 1.00 0.51 ATOM 57 NZ LYS 6 7.362 -9.212 8.617 1.00 0.51 ATOM 59 N LYS 7 3.556 -6.614 3.132 1.00 1.21 ATOM 60 CA LYS 7 4.274 -5.857 2.200 1.00 1.21 ATOM 61 C LYS 7 3.638 -4.626 1.856 1.00 1.21 ATOM 62 O LYS 7 4.308 -3.605 1.716 1.00 1.21 ATOM 63 CB LYS 7 4.503 -6.701 0.943 1.00 1.21 ATOM 64 CG LYS 7 5.505 -7.828 1.196 1.00 1.21 ATOM 65 CD LYS 7 5.710 -8.666 -0.066 1.00 1.21 ATOM 66 CE LYS 7 6.721 -9.783 0.186 1.00 1.21 ATOM 67 NZ LYS 7 6.916 -10.579 -1.055 1.00 1.21 ATOM 69 N CYS 8 2.346 -4.595 1.701 1.00 0.99 ATOM 70 CA CYS 8 1.553 -3.481 1.466 1.00 0.99 ATOM 71 C CYS 8 1.638 -2.463 2.580 1.00 0.99 ATOM 72 O CYS 8 1.764 -1.269 2.317 1.00 0.99 ATOM 73 CB CYS 8 0.101 -3.920 1.269 1.00 0.99 ATOM 74 SG CYS 8 -0.148 -4.745 -0.322 1.00 0.99 ATOM 76 N THR 9 1.580 -2.890 3.780 1.00 0.98 ATOM 77 CA THR 9 1.724 -2.064 4.908 1.00 0.98 ATOM 78 C THR 9 3.100 -1.393 5.002 1.00 0.98 ATOM 79 O THR 9 3.188 -0.213 5.337 1.00 0.98 ATOM 80 CB THR 9 1.461 -2.885 6.186 1.00 0.98 ATOM 81 OG1 THR 9 0.135 -3.395 6.146 1.00 0.98 ATOM 82 CG2 THR 9 1.620 -2.028 7.440 1.00 0.98 ATOM 84 N GLU 10 4.130 -2.177 4.692 1.00 1.09 ATOM 85 CA GLU 10 5.432 -1.634 4.658 1.00 1.09 ATOM 86 C GLU 10 5.643 -0.533 3.622 1.00 1.09 ATOM 87 O GLU 10 6.293 0.469 3.911 1.00 1.09 ATOM 88 CB GLU 10 6.423 -2.777 4.420 1.00 1.09 ATOM 89 CG GLU 10 6.480 -3.727 5.617 1.00 1.09 ATOM 90 CD GLU 10 7.404 -4.907 5.334 1.00 1.09 ATOM 91 OE1 GLU 10 7.555 -5.752 6.220 1.00 1.09 ATOM 92 OE2 GLU 10 7.957 -4.955 4.230 1.00 1.09 ATOM 94 N MET 11 5.064 -0.792 2.464 1.00 0.71 ATOM 95 CA MET 11 5.084 0.200 1.479 1.00 0.71 ATOM 96 C MET 11 4.320 1.390 1.872 1.00 0.71 ATOM 97 O MET 11 4.745 2.512 1.602 1.00 0.71 ATOM 98 CB MET 11 4.533 -0.367 0.169 1.00 0.71 ATOM 99 CG MET 11 5.488 -1.390 -0.443 1.00 0.71 ATOM 100 SD MET 11 7.054 -0.629 -0.927 1.00 0.71 ATOM 101 CE MET 11 7.852 -2.073 -1.650 1.00 0.71 ATOM 103 N LYS 12 3.201 1.295 2.507 1.00 0.92 ATOM 104 CA LYS 12 2.474 2.403 2.939 1.00 0.92 ATOM 105 C LYS 12 3.255 3.215 3.945 1.00 0.92 ATOM 106 O LYS 12 3.250 4.443 3.881 1.00 0.92 ATOM 107 CB LYS 12 1.141 1.954 3.546 1.00 0.92 ATOM 108 CG LYS 12 0.268 3.148 3.931 1.00 0.92 ATOM 109 CD LYS 12 -1.083 2.680 4.471 1.00 0.92 ATOM 110 CE LYS 12 -1.950 3.873 4.867 1.00 0.92 ATOM 111 NZ LYS 12 -3.254 3.399 5.401 1.00 0.92 ATOM 113 N LYS 13 3.959 2.509 4.904 1.00 1.35 ATOM 114 CA LYS 13 4.726 3.180 5.851 1.00 1.35 ATOM 115 C LYS 13 5.935 4.042 5.188 1.00 1.35 ATOM 116 O LYS 13 6.214 5.154 5.630 1.00 1.35 ATOM 117 CB LYS 13 5.287 2.171 6.857 1.00 1.35 ATOM 118 CG LYS 13 4.189 1.607 7.760 1.00 1.35 ATOM 119 CD LYS 13 4.768 0.593 8.747 1.00 1.35 ATOM 120 CE LYS 13 3.672 0.040 9.658 1.00 1.35 ATOM 121 NZ LYS 13 4.254 -0.934 10.618 1.00 1.35 ATOM 123 N LYS 14 6.520 3.379 4.154 1.00 1.28 ATOM 124 CA LYS 14 7.454 4.061 3.354 1.00 1.28 ATOM 125 C LYS 14 7.063 5.175 2.550 1.00 1.28 ATOM 126 O LYS 14 7.807 6.148 2.442 1.00 1.28 ATOM 127 CB LYS 14 8.084 2.973 2.479 1.00 1.28 ATOM 128 CG LYS 14 8.945 2.016 3.305 1.00 1.28 ATOM 129 CD LYS 14 9.554 0.932 2.415 1.00 1.28 ATOM 130 CE LYS 14 10.423 -0.017 3.239 1.00 1.28 ATOM 131 NZ LYS 14 11.016 -1.056 2.357 1.00 1.28 ATOM 133 N PHE 15 5.843 5.026 1.969 1.00 1.11 ATOM 134 CA PHE 15 5.356 6.094 1.165 1.00 1.11 ATOM 135 C PHE 15 5.332 7.318 1.932 1.00 1.11 ATOM 136 O PHE 15 5.757 8.361 1.442 1.00 1.11 ATOM 137 CB PHE 15 3.952 5.782 0.635 1.00 1.11 ATOM 138 CG PHE 15 3.970 4.689 -0.410 1.00 1.11 ATOM 139 CD1 PHE 15 2.854 3.877 -0.599 1.00 1.11 ATOM 140 CD2 PHE 15 5.104 4.489 -1.195 1.00 1.11 ATOM 141 CE1 PHE 15 2.872 2.871 -1.564 1.00 1.11 ATOM 142 CE2 PHE 15 5.122 3.483 -2.160 1.00 1.11 ATOM 143 CZ PHE 15 4.006 2.675 -2.343 1.00 1.11 ATOM 145 N LYS 16 4.838 7.181 3.142 1.00 2.37 ATOM 146 CA LYS 16 4.430 8.177 4.081 1.00 2.37 ATOM 147 C LYS 16 3.028 8.674 3.728 1.00 2.37 ATOM 148 O LYS 16 2.876 9.519 2.849 1.00 2.37 ATOM 149 CB LYS 16 5.415 9.349 4.101 1.00 2.37 ATOM 150 CG LYS 16 6.765 8.938 4.690 1.00 2.37 ATOM 151 CD LYS 16 7.737 10.118 4.689 1.00 2.37 ATOM 152 CE LYS 16 9.082 9.710 5.290 1.00 2.37 ATOM 153 NZ LYS 16 10.010 10.872 5.293 1.00 2.37 ATOM 155 N ASN 17 2.043 8.038 4.538 1.00 3.46 ATOM 156 CA ASN 17 0.756 8.639 4.771 1.00 3.46 ATOM 157 C ASN 17 0.041 8.960 3.518 1.00 3.46 ATOM 158 O ASN 17 -0.596 10.007 3.422 1.00 3.46 ATOM 159 CB ASN 17 0.924 9.902 5.620 1.00 3.46 ATOM 160 CG ASN 17 1.313 9.556 7.054 1.00 3.46 ATOM 161 ND2 ASN 17 2.025 10.438 7.725 1.00 3.46 ATOM 162 OD1 ASN 17 0.973 8.496 7.561 1.00 3.46 ATOM 164 N CYS 18 0.195 8.009 2.631 1.00 1.34 ATOM 165 CA CYS 18 -0.510 7.741 1.474 1.00 1.34 ATOM 166 C CYS 18 -1.436 6.711 1.847 1.00 1.34 ATOM 167 O CYS 18 -1.224 6.023 2.844 1.00 1.34 ATOM 168 CB CYS 18 0.369 7.258 0.319 1.00 1.34 ATOM 169 SG CYS 18 1.633 8.476 -0.125 1.00 1.34 ATOM 171 N GLU 19 -2.476 6.542 1.097 1.00 1.94 ATOM 172 CA GLU 19 -3.519 5.489 1.298 1.00 1.94 ATOM 173 C GLU 19 -3.048 4.341 0.596 1.00 1.94 ATOM 174 O GLU 19 -2.626 4.452 -0.552 1.00 1.94 ATOM 175 CB GLU 19 -4.898 5.898 0.774 1.00 1.94 ATOM 176 CG GLU 19 -5.493 7.042 1.595 1.00 1.94 ATOM 177 CD GLU 19 -6.826 7.499 1.011 1.00 1.94 ATOM 178 OE1 GLU 19 -7.427 8.413 1.580 1.00 1.94 ATOM 179 OE2 GLU 19 -7.237 6.926 -0.005 1.00 1.94 ATOM 181 N VAL 20 -3.161 3.179 1.393 1.00 1.50 ATOM 182 CA VAL 20 -3.318 1.766 1.032 1.00 1.50 ATOM 183 C VAL 20 -2.240 1.037 0.393 1.00 1.50 ATOM 184 O VAL 20 -1.179 0.857 0.986 1.00 1.50 ATOM 185 CB VAL 20 -4.590 1.708 0.159 1.00 1.50 ATOM 186 CG1 VAL 20 -5.826 2.059 0.986 1.00 1.50 ATOM 187 CG2 VAL 20 -4.485 2.700 -1.000 1.00 1.50 ATOM 189 N ARG 21 -2.340 0.546 -0.836 1.00 2.88 ATOM 190 CA ARG 21 -2.238 -0.841 -1.348 1.00 2.88 ATOM 191 C ARG 21 -3.199 -1.835 -1.003 1.00 2.88 ATOM 192 O ARG 21 -2.831 -2.957 -0.663 1.00 2.88 ATOM 193 CB ARG 21 -0.838 -1.300 -0.935 1.00 2.88 ATOM 194 CG ARG 21 0.227 -0.267 -1.306 1.00 2.88 ATOM 195 CD ARG 21 1.624 -0.784 -0.967 1.00 2.88 ATOM 196 NE ARG 21 2.083 -1.713 -2.020 1.00 2.88 ATOM 197 CZ ARG 21 2.755 -1.301 -3.081 1.00 2.88 ATOM 198 NH1 ARG 21 3.146 -2.163 -3.998 1.00 2.88 ATOM 199 NH2 ARG 21 3.034 -0.024 -3.222 1.00 2.88 ATOM 201 N CYS 22 -4.571 -1.508 -1.068 1.00 2.89 ATOM 202 CA CYS 22 -5.652 -2.383 -1.652 1.00 2.89 ATOM 203 C CYS 22 -5.793 -3.652 -0.852 1.00 2.89 ATOM 204 O CYS 22 -4.974 -3.922 0.024 1.00 2.89 ATOM 205 CB CYS 22 -5.340 -2.720 -3.111 1.00 2.89 ATOM 206 SG CYS 22 -6.743 -3.507 -3.940 1.00 2.89 ATOM 208 N ASP 23 -6.750 -4.505 -1.040 1.00 3.67 ATOM 209 CA ASP 23 -6.434 -5.922 -0.901 1.00 3.67 ATOM 210 C ASP 23 -6.851 -6.885 -2.042 1.00 3.67 ATOM 211 O ASP 23 -6.252 -7.946 -2.203 1.00 3.67 ATOM 212 CB ASP 23 -7.057 -6.376 0.423 1.00 3.67 ATOM 213 CG ASP 23 -6.679 -7.818 0.749 1.00 3.67 ATOM 214 OD1 ASP 23 -6.843 -8.214 1.908 1.00 3.67 ATOM 215 OD2 ASP 23 -6.163 -8.429 -0.542 1.00 3.67 ATOM 217 N GLU 24 -7.914 -6.598 -2.945 1.00 4.83 ATOM 218 CA GLU 24 -9.047 -7.449 -2.730 1.00 4.83 ATOM 219 C GLU 24 -8.914 -8.942 -2.872 1.00 4.83 ATOM 220 O GLU 24 -9.410 -9.688 -2.033 1.00 4.83 ATOM 221 CB GLU 24 -10.130 -6.925 -3.677 1.00 4.83 ATOM 222 CG GLU 24 -10.615 -5.537 -3.260 1.00 4.83 ATOM 223 CD GLU 24 -11.630 -4.990 -4.258 1.00 4.83 ATOM 224 OE1 GLU 24 -12.117 -3.876 -4.041 1.00 4.83 ATOM 225 OE2 GLU 24 -11.915 -5.691 -5.235 1.00 4.83 ATOM 227 N SER 25 -8.182 -9.287 -4.022 1.00 3.90 ATOM 228 CA SER 25 -7.856 -10.629 -4.070 1.00 3.90 ATOM 229 C SER 25 -6.485 -10.621 -4.483 1.00 3.90 ATOM 230 O SER 25 -6.131 -9.925 -5.432 1.00 3.90 ATOM 231 CB SER 25 -8.692 -11.444 -5.058 1.00 3.90 ATOM 232 OG SER 25 -8.245 -12.792 -5.075 1.00 3.90 ATOM 234 N ASN 26 -5.548 -11.431 -3.786 1.00 4.51 ATOM 235 CA ASN 26 -4.241 -11.510 -4.421 1.00 4.51 ATOM 236 C ASN 26 -3.609 -10.246 -4.831 1.00 4.51 ATOM 237 O ASN 26 -3.429 -9.351 -4.009 1.00 4.51 ATOM 238 CB ASN 26 -4.384 -12.444 -5.627 1.00 4.51 ATOM 239 CG ASN 26 -4.680 -13.873 -5.187 1.00 4.51 ATOM 240 ND2 ASN 26 -5.736 -14.467 -5.704 1.00 4.51 ATOM 241 OD1 ASN 26 -3.961 -14.445 -4.379 1.00 4.51 ATOM 243 N HIS 27 -3.203 -10.008 -6.127 1.00 4.07 ATOM 244 CA HIS 27 -2.226 -8.899 -6.280 1.00 4.07 ATOM 245 C HIS 27 -2.858 -7.614 -6.569 1.00 4.07 ATOM 246 O HIS 27 -3.425 -7.434 -7.645 1.00 4.07 ATOM 247 CB HIS 27 -1.226 -9.253 -7.384 1.00 4.07 ATOM 248 CG HIS 27 -0.157 -8.215 -7.573 1.00 4.07 ATOM 249 ND1 HIS 27 0.925 -8.085 -6.731 1.00 4.07 ATOM 250 CD2 HIS 27 -0.016 -7.254 -8.522 1.00 4.07 ATOM 251 CE1 HIS 27 1.685 -7.085 -7.157 1.00 4.07 ATOM 252 NE2 HIS 27 1.134 -6.563 -8.246 1.00 4.07 ATOM 254 N CYS 28 -2.712 -6.763 -5.553 1.00 3.51 ATOM 255 CA CYS 28 -3.353 -5.509 -5.315 1.00 3.51 ATOM 256 C CYS 28 -2.415 -4.565 -4.643 1.00 3.51 ATOM 257 O CYS 28 -1.947 -4.841 -3.540 1.00 3.51 ATOM 258 CB CYS 28 -4.606 -5.699 -4.457 1.00 3.51 ATOM 259 SG CYS 28 -5.951 -6.476 -5.384 1.00 3.51 ATOM 261 N VAL 29 -2.158 -3.392 -5.387 1.00 2.96 ATOM 262 CA VAL 29 -1.876 -2.133 -4.822 1.00 2.96 ATOM 263 C VAL 29 -2.660 -0.979 -5.493 1.00 2.96 ATOM 264 O VAL 29 -2.835 -0.978 -6.709 1.00 2.96 ATOM 265 CB VAL 29 -0.358 -1.857 -4.897 1.00 2.96 ATOM 266 CG1 VAL 29 -0.038 -0.469 -4.345 1.00 2.96 ATOM 267 CG2 VAL 29 0.412 -2.893 -4.079 1.00 2.96 ATOM 269 N GLU 30 -3.126 -0.016 -4.793 1.00 2.37 ATOM 270 CA GLU 30 -3.254 1.261 -5.325 1.00 2.37 ATOM 271 C GLU 30 -2.626 2.213 -4.470 1.00 2.37 ATOM 272 O GLU 30 -2.813 2.170 -3.255 1.00 2.37 ATOM 273 CB GLU 30 -4.728 1.623 -5.524 1.00 2.37 ATOM 274 CG GLU 30 -4.883 3.003 -6.166 1.00 2.37 ATOM 275 CD GLU 30 -6.355 3.367 -6.326 1.00 2.37 ATOM 276 OE1 GLU 30 -6.632 4.462 -6.824 1.00 2.37 ATOM 277 OE2 GLU 30 -7.198 2.546 -5.946 1.00 2.37 ATOM 279 N VAL 31 -1.857 3.143 -4.938 1.00 2.26 ATOM 280 CA VAL 31 -1.236 3.982 -4.018 1.00 2.26 ATOM 281 C VAL 31 -1.744 5.349 -4.282 1.00 2.26 ATOM 282 O VAL 31 -1.697 5.817 -5.418 1.00 2.26 ATOM 283 CB VAL 31 0.305 3.959 -4.121 1.00 2.26 ATOM 284 CG1 VAL 31 0.924 4.933 -3.119 1.00 2.26 ATOM 285 CG2 VAL 31 0.837 2.558 -3.826 1.00 2.26 ATOM 287 N ARG 32 -2.236 5.972 -3.123 1.00 2.31 ATOM 288 CA ARG 32 -2.801 7.314 -3.339 1.00 2.31 ATOM 289 C ARG 32 -2.059 8.235 -2.539 1.00 2.31 ATOM 290 O ARG 32 -2.111 8.168 -1.313 1.00 2.31 ATOM 291 CB ARG 32 -4.285 7.376 -2.970 1.00 2.31 ATOM 292 CG ARG 32 -5.127 6.466 -3.863 1.00 2.31 ATOM 293 CD ARG 32 -6.590 6.478 -3.423 1.00 2.31 ATOM 294 NE ARG 32 -7.386 5.601 -4.306 1.00 2.31 ATOM 295 CZ ARG 32 -8.691 5.453 -4.164 1.00 2.31 ATOM 296 NH1 ARG 32 -9.364 4.660 -4.974 1.00 2.31 ATOM 297 NH2 ARG 32 -9.323 6.100 -3.209 1.00 2.31 ATOM 299 N CYS 33 -1.316 9.171 -3.166 1.00 2.72 ATOM 300 CA CYS 33 -0.730 10.210 -2.283 1.00 2.72 ATOM 301 C CYS 33 -1.323 11.502 -2.661 1.00 2.72 ATOM 302 O CYS 33 -1.211 11.919 -3.811 1.00 2.72 ATOM 303 CB CYS 33 0.793 10.278 -2.409 1.00 2.72 ATOM 304 SG CYS 33 1.567 8.662 -2.150 1.00 2.72 ATOM 306 N SER 34 -1.986 12.233 -1.735 1.00 4.65 ATOM 307 CA SER 34 -2.948 13.200 -2.320 1.00 4.65 ATOM 308 C SER 34 -2.337 14.281 -3.168 1.00 4.65 ATOM 309 O SER 34 -2.891 14.639 -4.205 1.00 4.65 ATOM 310 CB SER 34 -3.749 13.824 -1.177 1.00 4.65 ATOM 311 OG SER 34 -2.961 14.794 -0.504 1.00 4.65 ATOM 313 N ASP 35 -1.119 14.764 -2.613 1.00 5.75 ATOM 314 CA ASP 35 -0.305 15.441 -3.502 1.00 5.75 ATOM 315 C ASP 35 0.190 14.684 -4.657 1.00 5.75 ATOM 316 O ASP 35 0.123 15.166 -5.785 1.00 5.75 ATOM 317 CB ASP 35 0.873 16.004 -2.699 1.00 5.75 ATOM 318 CG ASP 35 0.399 16.986 -1.632 1.00 5.75 ATOM 319 OD1 ASP 35 1.199 17.321 -0.753 1.00 5.75 ATOM 320 OD2 ASP 35 -1.046 17.316 -1.965 1.00 5.75 ATOM 322 N THR 36 0.703 13.418 -4.284 1.00 7.62 ATOM 323 CA THR 36 2.032 13.109 -4.951 1.00 7.62 ATOM 324 C THR 36 1.875 11.877 -5.854 1.00 7.62 ATOM 325 O THR 36 2.811 11.508 -6.561 1.00 7.62 ATOM 326 CB THR 36 3.143 12.854 -3.914 1.00 7.62 ATOM 327 OG1 THR 36 3.309 14.016 -3.114 1.00 7.62 ATOM 328 CG2 THR 36 4.472 12.531 -4.593 1.00 7.62 ATOM 330 N LYS 37 0.602 11.312 -5.747 1.00 7.66 ATOM 331 CA LYS 37 -0.033 10.580 -6.754 1.00 7.66 ATOM 332 C LYS 37 0.759 9.345 -7.272 1.00 7.66 ATOM 333 O LYS 37 0.836 9.124 -8.478 1.00 7.66 ATOM 334 CB LYS 37 -0.340 11.534 -7.913 1.00 7.66 ATOM 335 CG LYS 37 -1.358 12.600 -7.509 1.00 7.66 ATOM 336 CD LYS 37 -1.640 13.549 -8.675 1.00 7.66 ATOM 337 CE LYS 37 -2.669 14.606 -8.275 1.00 7.66 ATOM 338 NZ LYS 37 -2.939 15.511 -9.423 1.00 7.66 ATOM 340 N TYR 38 1.306 8.599 -6.188 1.00 6.31 ATOM 341 CA TYR 38 2.414 7.796 -6.402 1.00 6.31 ATOM 342 C TYR 38 2.255 6.328 -6.686 1.00 6.31 ATOM 343 O TYR 38 2.422 5.504 -5.789 1.00 6.31 ATOM 344 CB TYR 38 3.294 7.995 -5.162 1.00 6.31 ATOM 345 CG TYR 38 4.562 7.168 -5.221 1.00 6.31 ATOM 346 CD1 TYR 38 5.736 7.711 -5.748 1.00 6.31 ATOM 347 CD2 TYR 38 4.571 5.857 -4.747 1.00 6.31 ATOM 348 CE1 TYR 38 6.904 6.949 -5.802 1.00 6.31 ATOM 349 CE2 TYR 38 5.738 5.092 -4.800 1.00 6.31 ATOM 350 CZ TYR 38 6.901 5.642 -5.327 1.00 6.31 ATOM 351 OH TYR 38 8.051 4.891 -5.379 1.00 6.31 ATOM 353 N THR 39 1.918 5.821 -7.961 1.00 6.11 ATOM 354 CA THR 39 1.122 4.649 -7.874 1.00 6.11 ATOM 355 C THR 39 2.109 3.601 -8.162 1.00 6.11 ATOM 356 O THR 39 2.502 3.423 -9.313 1.00 6.11 ATOM 357 CB THR 39 -0.040 4.557 -8.882 1.00 6.11 ATOM 358 OG1 THR 39 -0.923 5.652 -8.675 1.00 6.11 ATOM 359 CG2 THR 39 -0.823 3.258 -8.710 1.00 6.11 ATOM 361 N LEU 40 2.475 2.905 -6.995 1.00 7.39 ATOM 362 CA LEU 40 3.681 2.134 -7.068 1.00 7.39 ATOM 363 C LEU 40 3.476 0.993 -8.074 1.00 7.39 ATOM 364 O LEU 40 4.407 0.623 -8.785 1.00 7.39 ATOM 365 CB LEU 40 4.064 1.564 -5.699 1.00 7.39 ATOM 366 CG LEU 40 5.359 0.744 -5.739 1.00 7.39 ATOM 367 CD1 LEU 40 6.527 1.623 -6.178 1.00 7.39 ATOM 368 CD2 LEU 40 5.666 0.174 -4.354 1.00 7.39 ATOM 370 N CYS 41 2.170 0.495 -8.054 1.00 9.25 ATOM 371 CA CYS 41 1.739 -0.778 -8.382 1.00 9.25 ATOM 372 C CYS 41 0.325 -0.635 -8.281 1.00 9.25 ATOM 373 O CYS 41 -0.159 0.464 -7.960 1.00 9.25 ATOM 374 CB CYS 41 2.221 -1.886 -7.445 1.00 9.25 ATOM 375 SG CYS 41 1.622 -3.515 -7.959 1.00 9.25 TER END