####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 41 ( 335), selected 41 , name T0955TS156_1 # Molecule2: number of CA atoms 41 ( 665), selected 41 , name T0955.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS156_1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 28 3 - 30 4.95 12.29 LCS_AVERAGE: 57.53 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 16 1 - 16 1.39 10.79 LONGEST_CONTINUOUS_SEGMENT: 16 2 - 17 1.99 10.56 LCS_AVERAGE: 23.02 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 14 2 - 15 0.64 10.70 LCS_AVERAGE: 17.49 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 41 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 1 S 1 3 16 24 3 3 7 13 15 17 18 20 21 22 23 23 25 26 27 29 29 30 30 31 LCS_GDT Q 2 Q 2 14 16 24 8 13 14 14 15 17 18 20 21 22 23 23 25 26 27 29 29 30 30 31 LCS_GDT E 3 E 3 14 16 28 8 13 14 14 15 17 18 20 21 22 23 23 25 26 27 29 29 30 30 31 LCS_GDT T 4 T 4 14 16 28 8 13 14 14 15 17 18 20 21 22 23 23 25 26 27 29 29 30 30 31 LCS_GDT R 5 R 5 14 16 28 8 13 14 14 15 17 18 20 21 22 23 23 25 26 27 29 29 30 30 31 LCS_GDT K 6 K 6 14 16 28 9 13 14 14 15 17 18 20 21 22 23 23 25 26 27 29 29 30 30 31 LCS_GDT K 7 K 7 14 16 28 9 13 14 14 15 17 18 20 21 22 23 23 25 26 27 29 29 30 30 31 LCS_GDT C 8 C 8 14 16 28 9 13 14 14 15 17 18 20 21 22 23 23 25 26 27 29 29 30 30 31 LCS_GDT T 9 T 9 14 16 28 9 13 14 14 15 17 18 20 21 22 23 23 25 26 27 29 29 30 30 31 LCS_GDT E 10 E 10 14 16 28 9 13 14 14 15 17 18 20 21 22 23 23 25 26 27 29 29 30 30 31 LCS_GDT M 11 M 11 14 16 28 9 13 14 14 15 17 18 20 21 22 23 23 25 26 27 29 29 30 30 31 LCS_GDT K 12 K 12 14 16 28 9 13 14 14 15 17 18 20 21 22 23 23 25 26 27 29 29 30 30 31 LCS_GDT K 13 K 13 14 16 28 9 13 14 14 15 17 18 20 21 22 23 23 25 26 27 29 29 30 30 31 LCS_GDT K 14 K 14 14 16 28 9 13 14 14 15 17 18 20 21 22 23 23 25 26 27 29 29 30 30 31 LCS_GDT F 15 F 15 14 16 28 4 12 14 14 15 17 18 20 21 22 23 23 25 26 27 29 29 30 30 31 LCS_GDT K 16 K 16 5 16 28 4 4 7 14 15 17 18 20 21 22 23 23 25 26 27 29 29 30 30 31 LCS_GDT N 17 N 17 5 16 28 4 4 5 6 9 15 15 20 21 22 23 23 25 26 27 29 29 30 30 31 LCS_GDT C 18 C 18 5 6 28 4 4 5 8 10 15 16 20 21 22 23 23 25 26 27 29 29 30 30 31 LCS_GDT E 19 E 19 5 6 28 3 4 5 8 10 15 16 20 21 22 23 23 25 26 27 29 29 30 30 31 LCS_GDT V 20 V 20 5 6 28 3 4 5 5 7 9 13 14 17 18 20 23 25 26 27 29 29 30 30 31 LCS_GDT R 21 R 21 5 6 28 0 4 5 5 7 9 13 14 17 18 20 23 25 26 27 29 29 30 30 31 LCS_GDT C 22 C 22 3 6 28 1 3 3 4 6 7 10 14 15 16 18 21 24 25 27 29 29 30 30 31 LCS_GDT D 23 D 23 3 4 28 3 3 3 4 4 6 7 8 9 12 17 20 24 26 27 29 29 30 30 31 LCS_GDT E 24 E 24 3 4 28 3 3 3 4 4 6 7 8 9 11 13 20 21 23 26 27 29 30 30 31 LCS_GDT S 25 S 25 3 4 28 3 3 3 4 4 6 7 8 9 11 17 20 24 26 27 29 29 30 30 31 LCS_GDT N 26 N 26 3 5 28 3 3 3 4 4 6 12 15 19 21 23 23 25 26 27 29 29 30 30 31 LCS_GDT H 27 H 27 3 5 28 3 3 4 6 7 9 13 14 17 18 20 22 24 26 27 29 29 30 30 31 LCS_GDT C 28 C 28 3 5 28 3 3 5 6 8 9 13 15 19 21 23 23 25 26 27 29 29 30 30 31 LCS_GDT V 29 V 29 3 5 28 3 3 4 4 4 11 16 19 21 22 23 23 25 26 27 29 29 30 30 31 LCS_GDT E 30 E 30 3 5 28 3 3 4 10 13 17 18 20 21 22 23 23 25 26 27 29 29 30 30 31 LCS_GDT V 31 V 31 3 5 25 3 3 6 8 15 16 18 18 20 22 22 22 24 24 25 27 27 30 30 31 LCS_GDT R 32 R 32 3 4 11 3 3 5 5 6 8 9 14 15 18 19 20 23 23 23 24 25 26 27 29 LCS_GDT C 33 C 33 4 5 11 3 4 5 5 6 6 8 9 9 10 11 14 15 16 17 20 25 25 27 29 LCS_GDT S 34 S 34 4 5 11 3 4 4 5 5 5 8 9 9 10 10 12 14 15 18 20 22 22 23 25 LCS_GDT D 35 D 35 4 5 11 3 4 4 5 5 5 8 9 9 10 10 12 14 15 18 20 22 22 23 25 LCS_GDT T 36 T 36 4 5 11 3 4 5 5 6 6 8 9 9 10 11 14 15 16 18 22 25 25 27 29 LCS_GDT K 37 K 37 4 5 11 1 3 4 5 5 5 8 8 9 9 11 12 14 16 18 22 25 25 27 29 LCS_GDT Y 38 Y 38 3 4 11 0 3 4 4 4 5 8 8 8 9 11 14 15 16 20 22 25 25 27 29 LCS_GDT T 39 T 39 3 4 11 3 3 4 4 5 7 8 8 9 10 11 14 15 18 20 22 25 25 27 29 LCS_GDT L 40 L 40 3 3 11 3 3 3 3 5 7 8 8 9 10 11 14 15 16 16 20 25 25 27 29 LCS_GDT C 41 C 41 3 3 11 3 3 3 3 5 7 7 7 9 10 11 14 15 18 20 22 25 25 27 29 LCS_AVERAGE LCS_A: 32.68 ( 17.49 23.02 57.53 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 9 13 14 14 15 17 18 20 21 22 23 23 25 26 27 29 29 30 30 31 GDT PERCENT_AT 21.95 31.71 34.15 34.15 36.59 41.46 43.90 48.78 51.22 53.66 56.10 56.10 60.98 63.41 65.85 70.73 70.73 73.17 73.17 75.61 GDT RMS_LOCAL 0.37 0.57 0.64 0.64 1.00 1.92 1.98 2.67 2.79 2.93 3.39 3.39 3.92 4.20 4.48 4.92 4.92 5.12 5.12 5.35 GDT RMS_ALL_AT 10.52 10.75 10.70 10.70 10.38 10.21 10.19 10.36 10.47 10.33 10.84 10.84 11.11 11.30 11.49 11.88 11.88 11.70 11.70 11.87 # Checking swapping # possible swapping detected: E 3 E 3 # possible swapping detected: E 10 E 10 # possible swapping detected: E 19 E 19 # possible swapping detected: D 23 D 23 # possible swapping detected: E 24 E 24 # possible swapping detected: E 30 E 30 # possible swapping detected: D 35 D 35 # possible swapping detected: Y 38 Y 38 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA S 1 S 1 2.187 0 0.651 0.721 3.210 42.273 35.758 3.210 LGA Q 2 Q 2 3.413 0 0.274 0.960 7.781 30.909 13.737 7.781 LGA E 3 E 3 1.662 0 0.066 1.179 5.190 58.182 38.182 3.525 LGA T 4 T 4 1.755 0 0.088 1.095 4.843 51.364 46.753 4.843 LGA R 5 R 5 3.007 0 0.079 1.421 13.122 33.182 12.562 13.122 LGA K 6 K 6 1.981 0 0.032 1.188 3.665 55.000 40.606 3.169 LGA K 7 K 7 1.042 0 0.028 0.623 2.429 65.909 57.778 2.429 LGA C 8 C 8 2.106 0 0.013 0.022 3.616 51.364 40.606 3.616 LGA T 9 T 9 0.685 0 0.031 0.084 1.711 82.273 72.987 1.711 LGA E 10 E 10 1.228 0 0.060 0.998 3.767 59.091 47.071 3.442 LGA M 11 M 11 2.451 0 0.024 0.859 5.658 38.636 26.136 5.658 LGA K 12 K 12 1.913 0 0.090 0.707 3.135 47.727 42.020 2.970 LGA K 13 K 13 2.090 0 0.049 0.616 3.499 35.909 36.364 3.499 LGA K 14 K 14 3.872 0 0.027 0.666 7.304 11.364 5.859 7.304 LGA F 15 F 15 3.851 0 0.443 0.607 11.172 16.818 6.116 11.172 LGA K 16 K 16 1.300 0 0.125 1.288 5.309 43.182 31.919 5.309 LGA N 17 N 17 3.918 0 0.145 0.490 6.916 13.636 7.045 6.916 LGA C 18 C 18 3.711 0 0.084 0.814 4.661 13.636 10.303 4.197 LGA E 19 E 19 4.502 0 0.146 0.948 7.583 1.818 1.010 7.364 LGA V 20 V 20 8.446 0 0.244 1.088 11.478 0.000 0.000 11.478 LGA R 21 R 21 10.889 0 0.619 1.651 17.483 0.000 0.000 17.443 LGA C 22 C 22 13.186 0 0.582 0.709 16.939 0.000 0.000 16.939 LGA D 23 D 23 12.357 0 0.619 0.841 13.925 0.000 0.000 13.925 LGA E 24 E 24 14.516 0 0.033 0.574 20.230 0.000 0.000 20.230 LGA S 25 S 25 13.975 0 0.501 0.472 16.626 0.000 0.000 16.626 LGA N 26 N 26 8.602 0 0.151 1.314 10.439 0.000 0.000 5.138 LGA H 27 H 27 12.126 0 0.388 1.233 20.168 0.000 0.000 20.168 LGA C 28 C 28 8.481 0 0.598 0.531 10.913 0.000 0.000 10.913 LGA V 29 V 29 4.919 0 0.213 0.183 8.461 16.818 9.610 6.902 LGA E 30 E 30 2.128 0 0.348 1.100 9.539 28.636 13.939 9.270 LGA V 31 V 31 4.993 0 0.645 0.714 8.667 7.273 4.416 8.067 LGA R 32 R 32 9.220 0 0.567 1.098 13.280 0.000 2.975 3.749 LGA C 33 C 33 15.330 0 0.147 0.352 18.568 0.000 0.000 15.182 LGA S 34 S 34 18.902 0 0.141 0.164 20.605 0.000 0.000 19.399 LGA D 35 D 35 20.488 0 0.101 1.152 21.509 0.000 0.000 21.431 LGA T 36 T 36 20.024 0 0.635 0.848 20.711 0.000 0.000 20.711 LGA K 37 K 37 17.901 0 0.652 1.490 19.739 0.000 0.000 14.096 LGA Y 38 Y 38 18.315 0 0.650 1.198 19.236 0.000 0.000 16.588 LGA T 39 T 39 17.327 0 0.602 0.919 19.328 0.000 0.000 15.729 LGA L 40 L 40 17.113 0 0.590 0.916 19.463 0.000 0.000 17.311 LGA C 41 C 41 15.699 0 0.081 0.127 16.417 0.000 0.000 16.114 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 41 164 164 100.00 335 335 100.00 41 41 SUMMARY(RMSD_GDC): 9.978 9.954 10.613 19.634 14.726 5.588 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 41 41 4.0 20 2.67 46.341 40.351 0.723 LGA_LOCAL RMSD: 2.666 Number of atoms: 20 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 10.360 Number of assigned atoms: 41 Std_ASGN_ATOMS RMSD: 9.978 Standard rmsd on all 41 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.880204 * X + 0.405332 * Y + -0.246872 * Z + 4.214489 Y_new = -0.414825 * X + 0.909782 * Y + 0.014719 * Z + -4.658496 Z_new = 0.230566 * X + 0.089453 * Y + 0.968936 * Z + -3.192296 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -0.440410 -0.232659 0.092060 [DEG: -25.2337 -13.3304 5.2747 ] ZXZ: -1.630346 0.249904 1.200701 [DEG: -93.4120 14.3184 68.7951 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0955TS156_1 REMARK 2: T0955.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS156_1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 41 41 4.0 20 2.67 40.351 9.98 REMARK ---------------------------------------------------------- MOLECULE T0955TS156_1 PFRMAT TS TARGET T0955 MODEL 1 PARENT 2LXY_A ATOM 1 N SER 1 -1.509 -14.769 -0.516 1.00 0.82 ATOM 5 CA SER 1 -1.540 -14.178 0.855 1.00 0.82 ATOM 7 CB SER 1 -1.983 -15.233 1.914 1.00 0.82 ATOM 10 OG SER 1 -1.083 -16.334 2.028 1.00 0.82 ATOM 12 C SER 1 -0.233 -13.546 1.265 1.00 0.82 ATOM 13 O SER 1 -0.222 -12.572 2.014 1.00 0.82 ATOM 14 N GLN 2 0.913 -14.088 0.785 1.00 0.82 ATOM 16 CA GLN 2 2.229 -13.620 1.153 1.00 0.82 ATOM 18 CB GLN 2 3.332 -14.648 0.796 1.00 0.82 ATOM 21 CG GLN 2 4.761 -14.271 1.248 1.00 0.82 ATOM 24 CD GLN 2 4.841 -14.147 2.772 1.00 0.82 ATOM 25 OE1 GLN 2 4.359 -14.995 3.519 1.00 0.82 ATOM 26 NE2 GLN 2 5.471 -13.051 3.264 1.00 0.82 ATOM 29 C GLN 2 2.550 -12.285 0.522 1.00 0.82 ATOM 30 O GLN 2 3.018 -11.371 1.201 1.00 0.82 ATOM 31 N GLU 3 2.248 -12.126 -0.789 1.00 0.82 ATOM 33 CA GLU 3 2.460 -10.890 -1.513 1.00 0.82 ATOM 35 CB GLU 3 2.090 -11.023 -3.010 1.00 0.82 ATOM 38 CG GLU 3 2.339 -9.740 -3.842 1.00 0.82 ATOM 41 CD GLU 3 1.976 -9.911 -5.317 1.00 0.82 ATOM 42 OE1 GLU 3 1.551 -11.018 -5.737 1.00 0.82 ATOM 43 OE2 GLU 3 2.102 -8.899 -6.053 1.00 0.82 ATOM 44 C GLU 3 1.628 -9.777 -0.935 1.00 0.82 ATOM 45 O GLU 3 2.107 -8.657 -0.770 1.00 0.82 ATOM 46 N THR 4 0.360 -10.083 -0.582 1.00 0.74 ATOM 48 CA THR 4 -0.557 -9.113 -0.030 1.00 0.74 ATOM 50 CB THR 4 -2.023 -9.512 -0.079 1.00 0.74 ATOM 52 CG2 THR 4 -2.463 -9.648 -1.551 1.00 0.74 ATOM 56 OG1 THR 4 -2.272 -10.732 0.606 1.00 0.74 ATOM 58 C THR 4 -0.165 -8.680 1.361 1.00 0.74 ATOM 59 O THR 4 -0.478 -7.559 1.735 1.00 0.74 ATOM 60 N ARG 5 0.530 -9.531 2.158 1.00 0.66 ATOM 62 CA ARG 5 0.894 -9.195 3.517 1.00 0.66 ATOM 64 CB ARG 5 1.324 -10.442 4.333 1.00 0.66 ATOM 67 CG ARG 5 1.611 -10.128 5.814 1.00 0.66 ATOM 70 CD ARG 5 2.073 -11.319 6.672 1.00 0.66 ATOM 73 NE ARG 5 3.421 -11.821 6.234 1.00 0.66 ATOM 75 CZ ARG 5 4.594 -11.207 6.560 1.00 0.66 ATOM 76 NH1 ARG 5 4.655 -9.982 7.131 1.00 0.66 ATOM 79 NH2 ARG 5 5.758 -11.849 6.322 1.00 0.66 ATOM 82 C ARG 5 2.008 -8.174 3.558 1.00 0.66 ATOM 83 O ARG 5 1.892 -7.156 4.242 1.00 0.66 ATOM 84 N LYS 6 3.116 -8.400 2.806 1.00 0.61 ATOM 86 CA LYS 6 4.255 -7.498 2.819 1.00 0.61 ATOM 88 CB LYS 6 5.481 -7.998 2.026 1.00 0.61 ATOM 91 CG LYS 6 6.205 -9.188 2.652 1.00 0.61 ATOM 94 CD LYS 6 7.456 -9.551 1.843 1.00 0.61 ATOM 97 CE LYS 6 8.252 -10.729 2.411 1.00 0.61 ATOM 100 NZ LYS 6 9.455 -10.979 1.588 1.00 0.61 ATOM 104 C LYS 6 3.889 -6.157 2.244 1.00 0.61 ATOM 105 O LYS 6 4.283 -5.122 2.774 1.00 0.61 ATOM 106 N LYS 7 3.081 -6.158 1.165 1.00 0.57 ATOM 108 CA LYS 7 2.564 -4.957 0.569 1.00 0.57 ATOM 110 CB LYS 7 1.921 -5.204 -0.810 1.00 0.57 ATOM 113 CG LYS 7 2.991 -5.501 -1.867 1.00 0.57 ATOM 116 CD LYS 7 2.446 -5.704 -3.282 1.00 0.57 ATOM 119 CE LYS 7 3.578 -5.934 -4.291 1.00 0.57 ATOM 122 NZ LYS 7 3.056 -6.129 -5.658 1.00 0.57 ATOM 126 C LYS 7 1.595 -4.226 1.459 1.00 0.57 ATOM 127 O LYS 7 1.560 -3.003 1.409 1.00 0.57 ATOM 128 N CYS 8 0.803 -4.911 2.317 1.00 0.54 ATOM 130 CA CYS 8 -0.184 -4.248 3.152 1.00 0.54 ATOM 132 CB CYS 8 -1.107 -5.256 3.893 1.00 0.54 ATOM 135 SG CYS 8 -2.468 -4.508 4.861 1.00 0.54 ATOM 137 C CYS 8 0.470 -3.322 4.160 1.00 0.54 ATOM 138 O CYS 8 0.085 -2.162 4.266 1.00 0.54 ATOM 139 N THR 9 1.495 -3.816 4.888 1.00 0.54 ATOM 141 CA THR 9 2.197 -3.106 5.941 1.00 0.54 ATOM 143 CB THR 9 3.158 -4.057 6.645 1.00 0.54 ATOM 145 CG2 THR 9 3.958 -3.344 7.758 1.00 0.54 ATOM 149 OG1 THR 9 2.429 -5.127 7.234 1.00 0.54 ATOM 151 C THR 9 2.994 -1.954 5.378 1.00 0.54 ATOM 152 O THR 9 2.926 -0.828 5.873 1.00 0.54 ATOM 153 N GLU 10 3.758 -2.210 4.291 1.00 0.55 ATOM 155 CA GLU 10 4.629 -1.235 3.678 1.00 0.55 ATOM 157 CB GLU 10 5.533 -1.861 2.588 1.00 0.55 ATOM 160 CG GLU 10 6.603 -2.832 3.140 1.00 0.55 ATOM 163 CD GLU 10 7.541 -2.141 4.133 1.00 0.55 ATOM 164 OE1 GLU 10 8.142 -1.096 3.774 1.00 0.55 ATOM 165 OE2 GLU 10 7.663 -2.643 5.281 1.00 0.55 ATOM 166 C GLU 10 3.849 -0.091 3.087 1.00 0.55 ATOM 167 O GLU 10 4.324 1.038 3.080 1.00 0.55 ATOM 168 N MET 11 2.612 -0.337 2.605 1.00 0.57 ATOM 170 CA MET 11 1.763 0.712 2.083 1.00 0.57 ATOM 172 CB MET 11 0.665 0.112 1.204 1.00 0.57 ATOM 175 CG MET 11 1.323 -0.399 -0.083 1.00 0.57 ATOM 178 SD MET 11 0.251 -1.377 -1.147 1.00 0.57 ATOM 179 CE MET 11 1.628 -1.789 -2.261 1.00 0.57 ATOM 183 C MET 11 1.196 1.620 3.152 1.00 0.57 ATOM 184 O MET 11 0.938 2.790 2.885 1.00 0.57 ATOM 185 N LYS 12 1.029 1.140 4.408 1.00 0.62 ATOM 187 CA LYS 12 0.577 1.970 5.511 1.00 0.62 ATOM 189 CB LYS 12 0.271 1.147 6.787 1.00 0.62 ATOM 192 CG LYS 12 -0.953 0.236 6.642 1.00 0.62 ATOM 195 CD LYS 12 -1.237 -0.583 7.905 1.00 0.62 ATOM 198 CE LYS 12 -2.393 -1.578 7.740 1.00 0.62 ATOM 201 NZ LYS 12 -2.610 -2.327 8.994 1.00 0.62 ATOM 205 C LYS 12 1.635 3.000 5.856 1.00 0.62 ATOM 206 O LYS 12 1.340 4.188 5.982 1.00 0.62 ATOM 207 N LYS 13 2.919 2.566 5.932 1.00 0.71 ATOM 209 CA LYS 13 4.084 3.397 6.178 1.00 0.71 ATOM 211 CB LYS 13 5.390 2.571 6.064 1.00 0.71 ATOM 214 CG LYS 13 5.607 1.527 7.163 1.00 0.71 ATOM 217 CD LYS 13 6.917 0.760 6.936 1.00 0.71 ATOM 220 CE LYS 13 7.198 -0.330 7.977 1.00 0.71 ATOM 223 NZ LYS 13 8.455 -1.039 7.652 1.00 0.71 ATOM 227 C LYS 13 4.203 4.485 5.137 1.00 0.71 ATOM 228 O LYS 13 4.598 5.606 5.447 1.00 0.71 ATOM 229 N LYS 14 3.832 4.186 3.869 1.00 0.84 ATOM 231 CA LYS 14 3.842 5.169 2.812 1.00 0.84 ATOM 233 CB LYS 14 3.682 4.575 1.403 1.00 0.84 ATOM 236 CG LYS 14 4.903 3.774 0.954 1.00 0.84 ATOM 239 CD LYS 14 4.721 3.240 -0.463 1.00 0.84 ATOM 242 CE LYS 14 5.892 2.397 -0.972 1.00 0.84 ATOM 245 NZ LYS 14 5.618 1.942 -2.350 1.00 0.84 ATOM 249 C LYS 14 2.795 6.246 2.997 1.00 0.84 ATOM 250 O LYS 14 3.046 7.382 2.604 1.00 0.84 ATOM 251 N PHE 15 1.622 5.951 3.629 1.00 1.02 ATOM 253 CA PHE 15 0.617 6.970 3.908 1.00 1.02 ATOM 255 CB PHE 15 -0.739 6.464 4.497 1.00 1.02 ATOM 258 CG PHE 15 -1.679 5.848 3.497 1.00 1.02 ATOM 259 CD1 PHE 15 -2.089 4.509 3.624 1.00 1.02 ATOM 261 CE1 PHE 15 -3.094 3.988 2.798 1.00 1.02 ATOM 263 CZ PHE 15 -3.674 4.798 1.808 1.00 1.02 ATOM 265 CE2 PHE 15 -3.241 6.118 1.637 1.00 1.02 ATOM 267 CD2 PHE 15 -2.250 6.638 2.481 1.00 1.02 ATOM 269 C PHE 15 1.119 7.966 4.927 1.00 1.02 ATOM 270 O PHE 15 0.850 9.157 4.803 1.00 1.02 ATOM 271 N LYS 16 1.875 7.496 5.950 1.00 1.26 ATOM 273 CA LYS 16 2.423 8.327 7.005 1.00 1.26 ATOM 275 CB LYS 16 3.198 7.475 8.045 1.00 1.26 ATOM 278 CG LYS 16 2.319 6.544 8.888 1.00 1.26 ATOM 281 CD LYS 16 3.142 5.730 9.898 1.00 1.26 ATOM 284 CE LYS 16 2.306 4.738 10.714 1.00 1.26 ATOM 287 NZ LYS 16 3.163 3.980 11.652 1.00 1.26 ATOM 291 C LYS 16 3.403 9.335 6.443 1.00 1.26 ATOM 292 O LYS 16 3.400 10.499 6.836 1.00 1.26 ATOM 293 N ASN 17 4.240 8.905 5.469 1.00 1.59 ATOM 295 CA ASN 17 5.228 9.730 4.812 1.00 1.59 ATOM 297 CB ASN 17 6.092 8.877 3.843 1.00 1.59 ATOM 300 CG ASN 17 7.016 7.940 4.629 1.00 1.59 ATOM 301 OD1 ASN 17 7.327 8.153 5.799 1.00 1.59 ATOM 302 ND2 ASN 17 7.470 6.842 3.977 1.00 1.59 ATOM 305 C ASN 17 4.550 10.827 4.012 1.00 1.59 ATOM 306 O ASN 17 4.872 11.996 4.212 1.00 1.59 ATOM 307 N CYS 18 3.571 10.486 3.130 1.00 1.92 ATOM 309 CA CYS 18 2.772 11.507 2.474 1.00 1.92 ATOM 311 CB CYS 18 3.562 12.330 1.402 1.00 1.92 ATOM 314 SG CYS 18 2.655 13.761 0.716 1.00 1.92 ATOM 316 C CYS 18 1.594 10.831 1.806 1.00 1.92 ATOM 317 O CYS 18 1.739 9.807 1.144 1.00 1.92 ATOM 318 N GLU 19 0.379 11.414 1.954 1.00 2.30 ATOM 320 CA GLU 19 -0.835 10.886 1.369 1.00 2.30 ATOM 322 CB GLU 19 -2.072 11.276 2.211 1.00 2.30 ATOM 325 CG GLU 19 -2.047 10.656 3.622 1.00 2.30 ATOM 328 CD GLU 19 -3.344 10.950 4.374 1.00 2.30 ATOM 329 OE1 GLU 19 -3.655 12.151 4.584 1.00 2.30 ATOM 330 OE2 GLU 19 -4.044 9.978 4.758 1.00 2.30 ATOM 331 C GLU 19 -0.991 11.461 -0.015 1.00 2.30 ATOM 332 O GLU 19 -1.221 12.660 -0.173 1.00 2.30 ATOM 333 N VAL 20 -0.834 10.605 -1.053 1.00 2.72 ATOM 335 CA VAL 20 -0.806 11.036 -2.437 1.00 2.72 ATOM 337 CB VAL 20 0.609 11.191 -3.015 1.00 2.72 ATOM 339 CG1 VAL 20 1.362 12.294 -2.253 1.00 2.72 ATOM 343 CG2 VAL 20 1.384 9.859 -2.929 1.00 2.72 ATOM 347 C VAL 20 -1.615 10.099 -3.298 1.00 2.72 ATOM 348 O VAL 20 -2.152 9.087 -2.852 1.00 2.72 ATOM 349 N ARG 21 -1.709 10.450 -4.601 1.00 3.03 ATOM 351 CA ARG 21 -2.425 9.719 -5.618 1.00 3.03 ATOM 353 CB ARG 21 -2.460 10.500 -6.949 1.00 3.03 ATOM 356 CG ARG 21 -3.311 11.775 -6.888 1.00 3.03 ATOM 359 CD ARG 21 -3.577 12.410 -8.263 1.00 3.03 ATOM 362 NE ARG 21 -2.269 12.766 -8.904 1.00 3.03 ATOM 364 CZ ARG 21 -1.597 13.925 -8.671 1.00 3.03 ATOM 365 NH1 ARG 21 -2.023 14.859 -7.790 1.00 3.03 ATOM 368 NH2 ARG 21 -0.443 14.141 -9.336 1.00 3.03 ATOM 371 C ARG 21 -1.739 8.413 -5.912 1.00 3.03 ATOM 372 O ARG 21 -2.404 7.413 -6.160 1.00 3.03 ATOM 373 N CYS 22 -0.383 8.397 -5.877 1.00 3.30 ATOM 375 CA CYS 22 0.407 7.224 -6.181 1.00 3.30 ATOM 377 CB CYS 22 1.920 7.521 -6.274 1.00 3.30 ATOM 380 SG CYS 22 2.291 8.550 -7.728 1.00 3.30 ATOM 382 C CYS 22 0.171 6.148 -5.156 1.00 3.30 ATOM 383 O CYS 22 -0.088 5.008 -5.523 1.00 3.30 ATOM 384 N ASP 23 0.167 6.507 -3.851 1.00 3.52 ATOM 386 CA ASP 23 -0.077 5.602 -2.751 1.00 3.52 ATOM 388 CB ASP 23 0.184 6.311 -1.400 1.00 3.52 ATOM 391 CG ASP 23 1.689 6.544 -1.216 1.00 3.52 ATOM 392 OD1 ASP 23 2.525 5.976 -1.969 1.00 3.52 ATOM 393 OD2 ASP 23 2.031 7.319 -0.293 1.00 3.52 ATOM 394 C ASP 23 -1.490 5.054 -2.775 1.00 3.52 ATOM 395 O ASP 23 -1.733 3.936 -2.332 1.00 3.52 ATOM 396 N GLU 24 -2.469 5.795 -3.338 1.00 3.69 ATOM 398 CA GLU 24 -3.805 5.267 -3.530 1.00 3.69 ATOM 400 CB GLU 24 -4.850 6.325 -3.964 1.00 3.69 ATOM 403 CG GLU 24 -5.233 7.362 -2.892 1.00 3.69 ATOM 406 CD GLU 24 -6.296 8.328 -3.439 1.00 3.69 ATOM 407 OE1 GLU 24 -6.699 8.212 -4.629 1.00 3.69 ATOM 408 OE2 GLU 24 -6.733 9.205 -2.651 1.00 3.69 ATOM 409 C GLU 24 -3.884 4.168 -4.589 1.00 3.69 ATOM 410 O GLU 24 -4.784 3.339 -4.528 1.00 3.69 ATOM 411 N SER 25 -2.985 4.159 -5.600 1.00 3.97 ATOM 413 CA SER 25 -3.236 3.583 -6.919 1.00 3.97 ATOM 415 CB SER 25 -2.237 4.131 -7.978 1.00 3.97 ATOM 418 OG SER 25 -2.452 5.514 -8.209 1.00 3.97 ATOM 420 C SER 25 -3.363 2.087 -7.163 1.00 3.97 ATOM 421 O SER 25 -3.071 1.203 -6.353 1.00 3.97 ATOM 422 N ASN 26 -3.867 1.815 -8.392 1.00 4.27 ATOM 424 CA ASN 26 -3.966 0.532 -9.036 1.00 4.27 ATOM 426 CB ASN 26 -5.351 0.385 -9.729 1.00 4.27 ATOM 429 CG ASN 26 -5.550 -1.005 -10.343 1.00 4.27 ATOM 430 OD1 ASN 26 -5.752 -1.978 -9.621 1.00 4.27 ATOM 431 ND2 ASN 26 -5.480 -1.119 -11.693 1.00 4.27 ATOM 434 C ASN 26 -2.856 0.472 -10.074 1.00 4.27 ATOM 435 O ASN 26 -2.153 -0.527 -10.188 1.00 4.27 ATOM 436 N HIS 27 -2.649 1.562 -10.852 1.00 4.47 ATOM 438 CA HIS 27 -1.629 1.657 -11.883 1.00 4.47 ATOM 440 CB HIS 27 -1.743 3.005 -12.644 1.00 4.47 ATOM 443 CG HIS 27 -0.626 3.268 -13.619 1.00 4.47 ATOM 444 ND1 HIS 27 -0.423 2.597 -14.805 1.00 4.47 ATOM 446 CE1 HIS 27 0.712 3.100 -15.350 1.00 4.47 ATOM 448 NE2 HIS 27 1.251 4.044 -14.598 1.00 4.47 ATOM 449 CD2 HIS 27 0.407 4.149 -13.508 1.00 4.47 ATOM 451 C HIS 27 -0.224 1.527 -11.332 1.00 4.47 ATOM 452 O HIS 27 0.590 0.774 -11.868 1.00 4.47 ATOM 453 N CYS 28 0.073 2.240 -10.222 1.00 4.53 ATOM 455 CA CYS 28 1.367 2.213 -9.571 1.00 4.53 ATOM 457 CB CYS 28 1.629 3.487 -8.722 1.00 4.53 ATOM 460 SG CYS 28 1.713 4.998 -9.731 1.00 4.53 ATOM 462 C CYS 28 1.495 1.021 -8.647 1.00 4.53 ATOM 463 O CYS 28 2.555 0.823 -8.058 1.00 4.53 ATOM 464 N VAL 29 0.420 0.199 -8.514 1.00 4.39 ATOM 466 CA VAL 29 0.330 -0.986 -7.682 1.00 4.39 ATOM 468 CB VAL 29 1.232 -2.140 -8.127 1.00 4.39 ATOM 470 CG1 VAL 29 0.969 -3.433 -7.313 1.00 4.39 ATOM 474 CG2 VAL 29 1.013 -2.398 -9.635 1.00 4.39 ATOM 478 C VAL 29 0.505 -0.629 -6.231 1.00 4.39 ATOM 479 O VAL 29 1.530 -0.942 -5.628 1.00 4.39 ATOM 480 N GLU 30 -0.478 0.097 -5.647 1.00 4.16 ATOM 482 CA GLU 30 -0.403 0.524 -4.275 1.00 4.16 ATOM 484 CB GLU 30 -0.026 2.001 -4.103 1.00 4.16 ATOM 487 CG GLU 30 1.401 2.360 -4.606 1.00 4.16 ATOM 490 CD GLU 30 2.526 1.685 -3.819 1.00 4.16 ATOM 491 OE1 GLU 30 2.587 1.857 -2.577 1.00 4.16 ATOM 492 OE2 GLU 30 3.382 1.013 -4.450 1.00 4.16 ATOM 493 C GLU 30 -1.663 0.060 -3.567 1.00 4.16 ATOM 494 O GLU 30 -1.858 -1.145 -3.452 1.00 4.16 ATOM 495 N VAL 31 -2.531 0.947 -3.017 1.00 3.98 ATOM 497 CA VAL 31 -3.631 0.489 -2.169 1.00 3.98 ATOM 499 CB VAL 31 -4.102 1.554 -1.196 1.00 3.98 ATOM 501 CG1 VAL 31 -5.370 1.135 -0.413 1.00 3.98 ATOM 505 CG2 VAL 31 -2.933 1.769 -0.204 1.00 3.98 ATOM 509 C VAL 31 -4.762 -0.140 -2.942 1.00 3.98 ATOM 510 O VAL 31 -5.307 -1.157 -2.505 1.00 3.98 ATOM 511 N ARG 32 -5.143 0.407 -4.121 1.00 3.87 ATOM 513 CA ARG 32 -6.207 -0.175 -4.909 1.00 3.87 ATOM 515 CB ARG 32 -6.832 0.755 -5.974 1.00 3.87 ATOM 518 CG ARG 32 -7.725 1.847 -5.354 1.00 3.87 ATOM 521 CD ARG 32 -8.612 2.596 -6.364 1.00 3.87 ATOM 524 NE ARG 32 -7.789 3.474 -7.261 1.00 3.87 ATOM 526 CZ ARG 32 -7.470 4.759 -6.948 1.00 3.87 ATOM 527 NH1 ARG 32 -7.840 5.342 -5.785 1.00 3.87 ATOM 530 NH2 ARG 32 -6.776 5.498 -7.842 1.00 3.87 ATOM 533 C ARG 32 -5.851 -1.518 -5.496 1.00 3.87 ATOM 534 O ARG 32 -6.744 -2.346 -5.656 1.00 3.87 ATOM 535 N CYS 33 -4.556 -1.811 -5.780 1.00 3.77 ATOM 537 CA CYS 33 -4.181 -3.177 -6.113 1.00 3.77 ATOM 539 CB CYS 33 -2.791 -3.414 -6.735 1.00 3.77 ATOM 542 SG CYS 33 -2.751 -2.929 -8.470 1.00 3.77 ATOM 544 C CYS 33 -4.332 -4.158 -4.996 1.00 3.77 ATOM 545 O CYS 33 -4.861 -5.235 -5.237 1.00 3.77 ATOM 546 N SER 34 -3.906 -3.836 -3.756 1.00 3.62 ATOM 548 CA SER 34 -4.031 -4.746 -2.631 1.00 3.62 ATOM 550 CB SER 34 -3.386 -4.171 -1.348 1.00 3.62 ATOM 553 OG SER 34 -1.980 -4.045 -1.516 1.00 3.62 ATOM 555 C SER 34 -5.471 -5.056 -2.307 1.00 3.62 ATOM 556 O SER 34 -5.788 -6.203 -2.005 1.00 3.62 ATOM 557 N ASP 35 -6.373 -4.048 -2.402 1.00 3.36 ATOM 559 CA ASP 35 -7.785 -4.176 -2.103 1.00 3.36 ATOM 561 CB ASP 35 -8.530 -2.815 -2.206 1.00 3.36 ATOM 564 CG ASP 35 -8.179 -1.874 -1.054 1.00 3.36 ATOM 565 OD1 ASP 35 -7.558 -2.308 -0.048 1.00 3.36 ATOM 566 OD2 ASP 35 -8.566 -0.682 -1.161 1.00 3.36 ATOM 567 C ASP 35 -8.479 -5.142 -3.032 1.00 3.36 ATOM 568 O ASP 35 -9.190 -6.036 -2.579 1.00 3.36 ATOM 569 N THR 36 -8.258 -5.009 -4.360 1.00 2.99 ATOM 571 CA THR 36 -8.865 -5.867 -5.360 1.00 2.99 ATOM 573 CB THR 36 -8.753 -5.313 -6.774 1.00 2.99 ATOM 575 CG2 THR 36 -9.518 -3.974 -6.845 1.00 2.99 ATOM 579 OG1 THR 36 -7.401 -5.104 -7.168 1.00 2.99 ATOM 581 C THR 36 -8.338 -7.288 -5.303 1.00 2.99 ATOM 582 O THR 36 -9.055 -8.221 -5.657 1.00 2.99 ATOM 583 N LYS 37 -7.079 -7.482 -4.843 1.00 2.61 ATOM 585 CA LYS 37 -6.462 -8.783 -4.698 1.00 2.61 ATOM 587 CB LYS 37 -4.913 -8.744 -4.681 1.00 2.61 ATOM 590 CG LYS 37 -4.291 -8.363 -6.031 1.00 2.61 ATOM 593 CD LYS 37 -2.756 -8.332 -6.004 1.00 2.61 ATOM 596 CE LYS 37 -2.144 -7.975 -7.365 1.00 2.61 ATOM 599 NZ LYS 37 -0.666 -7.994 -7.308 1.00 2.61 ATOM 603 C LYS 37 -6.922 -9.606 -3.505 1.00 2.61 ATOM 604 O LYS 37 -6.688 -10.812 -3.507 1.00 2.61 ATOM 605 N TYR 38 -7.605 -9.032 -2.478 1.00 2.29 ATOM 607 CA TYR 38 -8.101 -9.788 -1.323 1.00 2.29 ATOM 609 CB TYR 38 -8.476 -8.915 -0.082 1.00 2.29 ATOM 612 CG TYR 38 -7.269 -8.384 0.645 1.00 2.29 ATOM 613 CD1 TYR 38 -6.914 -7.026 0.634 1.00 2.29 ATOM 615 CE1 TYR 38 -5.803 -6.563 1.361 1.00 2.29 ATOM 617 CZ TYR 38 -5.042 -7.462 2.122 1.00 2.29 ATOM 618 OH TYR 38 -3.936 -7.005 2.865 1.00 2.29 ATOM 620 CE2 TYR 38 -5.388 -8.820 2.154 1.00 2.29 ATOM 622 CD2 TYR 38 -6.497 -9.273 1.422 1.00 2.29 ATOM 624 C TYR 38 -9.273 -10.719 -1.593 1.00 2.29 ATOM 625 O TYR 38 -9.872 -11.260 -0.665 1.00 2.29 ATOM 626 N THR 39 -9.618 -10.960 -2.871 1.00 2.09 ATOM 628 CA THR 39 -10.561 -11.961 -3.312 1.00 2.09 ATOM 630 CB THR 39 -11.088 -11.644 -4.707 1.00 2.09 ATOM 632 CG2 THR 39 -11.813 -10.282 -4.655 1.00 2.09 ATOM 636 OG1 THR 39 -10.045 -11.569 -5.677 1.00 2.09 ATOM 638 C THR 39 -9.953 -13.349 -3.270 1.00 2.09 ATOM 639 O THR 39 -10.663 -14.338 -3.093 1.00 2.09 ATOM 640 N LEU 40 -8.612 -13.452 -3.440 1.00 2.09 ATOM 642 CA LEU 40 -7.900 -14.707 -3.544 1.00 2.09 ATOM 644 CB LEU 40 -6.446 -14.494 -4.044 1.00 2.09 ATOM 647 CG LEU 40 -6.338 -13.995 -5.506 1.00 2.09 ATOM 649 CD1 LEU 40 -4.884 -13.636 -5.865 1.00 2.09 ATOM 653 CD2 LEU 40 -6.938 -14.984 -6.528 1.00 2.09 ATOM 657 C LEU 40 -7.858 -15.429 -2.217 1.00 2.09 ATOM 658 O LEU 40 -8.167 -16.618 -2.153 1.00 2.09 ATOM 659 N CYS 41 -7.493 -14.717 -1.128 1.00 2.09 ATOM 661 CA CYS 41 -7.449 -15.271 0.204 1.00 2.09 ATOM 663 CB CYS 41 -6.003 -15.439 0.749 1.00 2.09 ATOM 666 SG CYS 41 -5.040 -16.645 -0.224 1.00 2.09 ATOM 668 C CYS 41 -8.224 -14.298 1.115 1.00 2.09 ATOM 669 O CYS 41 -9.259 -14.723 1.697 1.00 2.09 ATOM 670 OXT CYS 41 -7.796 -13.119 1.246 1.00 2.09 TER END