####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 41 ( 335), selected 41 , name T0955TS122_1 # Molecule2: number of CA atoms 41 ( 665), selected 41 , name T0955.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS122_1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 25 14 - 38 4.91 17.47 LONGEST_CONTINUOUS_SEGMENT: 25 15 - 39 4.55 18.43 LONGEST_CONTINUOUS_SEGMENT: 25 16 - 40 4.67 19.10 LONGEST_CONTINUOUS_SEGMENT: 25 17 - 41 4.92 19.75 LCS_AVERAGE: 56.51 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 18 18 - 35 1.79 19.84 LCS_AVERAGE: 39.44 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 15 2 - 16 0.97 19.58 LCS_AVERAGE: 23.02 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 41 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 1 S 1 3 17 19 3 3 4 14 16 16 17 19 21 21 22 22 22 23 24 24 25 25 26 27 LCS_GDT Q 2 Q 2 15 17 19 6 11 14 15 16 16 17 19 21 21 22 22 22 23 24 24 25 25 26 27 LCS_GDT E 3 E 3 15 17 19 7 11 14 15 16 16 17 19 21 21 22 22 22 23 24 24 25 25 26 27 LCS_GDT T 4 T 4 15 17 19 6 11 14 15 16 16 17 19 21 21 22 22 22 23 24 24 25 25 26 27 LCS_GDT R 5 R 5 15 17 19 6 11 14 15 16 16 17 19 21 21 22 22 22 23 24 24 25 25 26 27 LCS_GDT K 6 K 6 15 17 19 7 11 14 15 16 16 17 19 21 21 22 22 22 23 24 24 25 25 26 27 LCS_GDT K 7 K 7 15 17 19 7 11 14 15 16 16 17 19 21 21 22 22 22 23 24 24 25 25 26 27 LCS_GDT C 8 C 8 15 17 19 7 11 14 15 16 16 17 19 21 21 22 22 22 23 24 24 25 25 26 27 LCS_GDT T 9 T 9 15 17 19 7 11 14 15 16 16 17 19 21 21 22 22 22 23 24 24 25 25 26 27 LCS_GDT E 10 E 10 15 17 19 7 11 14 15 16 16 17 19 21 21 22 22 22 23 24 24 25 25 27 28 LCS_GDT M 11 M 11 15 17 19 7 11 14 15 16 16 17 19 21 21 22 22 22 23 24 24 25 25 27 28 LCS_GDT K 12 K 12 15 17 19 7 11 14 15 16 16 17 19 21 21 22 22 22 23 24 24 25 25 27 28 LCS_GDT K 13 K 13 15 17 22 6 10 14 15 16 16 17 19 21 21 22 22 22 23 24 24 25 25 27 28 LCS_GDT K 14 K 14 15 17 25 6 10 14 15 16 16 17 19 21 21 22 22 22 23 24 24 25 25 27 28 LCS_GDT F 15 F 15 15 17 25 6 10 14 15 16 16 17 19 21 21 22 22 22 23 24 24 25 25 27 28 LCS_GDT K 16 K 16 15 17 25 4 8 14 15 16 16 17 19 21 21 22 22 22 23 24 24 25 25 27 28 LCS_GDT N 17 N 17 3 17 25 3 3 9 12 14 16 18 19 21 21 22 22 22 23 24 24 25 25 27 28 LCS_GDT C 18 C 18 7 18 25 0 9 12 15 16 17 18 19 20 21 22 22 22 23 24 24 25 25 27 28 LCS_GDT E 19 E 19 7 18 25 3 6 9 11 15 17 18 19 20 21 21 22 22 23 23 23 25 25 26 27 LCS_GDT V 20 V 20 7 18 25 6 9 12 15 16 17 18 19 20 21 21 22 22 23 24 24 25 25 27 28 LCS_GDT R 21 R 21 7 18 25 6 9 12 15 16 17 18 19 20 21 21 22 22 23 24 24 25 25 27 28 LCS_GDT C 22 C 22 7 18 25 5 9 12 15 16 17 18 19 20 21 21 22 22 23 24 24 25 25 27 28 LCS_GDT D 23 D 23 7 18 25 5 9 12 15 16 17 18 19 20 21 21 22 22 23 24 24 25 25 27 28 LCS_GDT E 24 E 24 7 18 25 5 9 12 15 16 17 18 19 20 21 21 22 22 23 24 24 25 25 27 28 LCS_GDT S 25 S 25 5 18 25 3 6 12 14 16 17 18 19 20 21 21 22 22 23 24 24 25 25 27 28 LCS_GDT N 26 N 26 5 18 25 3 4 7 8 15 16 18 19 20 21 21 22 22 23 24 24 25 25 27 28 LCS_GDT H 27 H 27 8 18 25 5 9 12 15 16 17 18 19 20 21 21 22 22 23 24 24 25 25 27 28 LCS_GDT C 28 C 28 8 18 25 5 9 12 15 16 17 18 19 20 21 21 22 22 23 24 24 25 25 27 28 LCS_GDT V 29 V 29 8 18 25 6 9 12 15 16 17 18 19 20 21 21 22 22 23 24 24 25 25 27 28 LCS_GDT E 30 E 30 8 18 25 6 9 12 15 16 17 18 19 20 21 21 22 22 23 24 24 25 25 27 28 LCS_GDT V 31 V 31 8 18 25 6 9 12 15 16 17 18 19 20 21 21 22 22 23 24 24 25 25 27 28 LCS_GDT R 32 R 32 8 18 25 6 9 12 15 16 17 18 19 20 21 21 22 22 23 24 24 25 25 27 28 LCS_GDT C 33 C 33 8 18 25 3 7 12 15 16 17 18 19 21 21 22 22 22 23 24 24 25 25 27 28 LCS_GDT S 34 S 34 8 18 25 3 8 12 15 16 17 18 19 21 21 22 22 22 23 24 24 25 25 27 28 LCS_GDT D 35 D 35 4 18 25 3 4 9 15 16 17 18 19 21 21 22 22 22 23 24 24 25 25 27 28 LCS_GDT T 36 T 36 4 17 25 3 4 4 6 12 16 18 19 21 21 22 22 22 23 24 24 25 25 27 28 LCS_GDT K 37 K 37 5 7 25 4 5 5 5 6 7 8 10 15 20 21 22 22 23 24 24 25 25 27 28 LCS_GDT Y 38 Y 38 5 7 25 4 5 5 5 7 10 16 19 19 21 21 22 22 23 23 24 25 25 26 28 LCS_GDT T 39 T 39 5 7 25 4 5 5 5 6 7 8 10 10 12 16 18 19 21 23 23 24 25 26 27 LCS_GDT L 40 L 40 5 6 25 4 5 5 6 6 7 8 10 10 12 14 17 19 19 22 23 23 23 24 25 LCS_GDT C 41 C 41 5 6 25 3 5 5 6 6 7 8 10 10 12 14 17 17 18 19 22 22 23 24 24 LCS_AVERAGE LCS_A: 39.66 ( 23.02 39.44 56.51 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 7 11 14 15 16 17 18 19 21 21 22 22 22 23 24 24 25 25 27 28 GDT PERCENT_AT 17.07 26.83 34.15 36.59 39.02 41.46 43.90 46.34 51.22 51.22 53.66 53.66 53.66 56.10 58.54 58.54 60.98 60.98 65.85 68.29 GDT RMS_LOCAL 0.28 0.56 0.87 0.97 1.23 1.52 1.79 2.03 2.64 2.64 3.05 2.83 2.83 3.42 4.04 4.04 5.03 4.55 6.22 6.36 GDT RMS_ALL_AT 19.65 20.31 19.68 19.58 19.55 19.83 19.84 19.81 18.78 18.78 18.59 19.40 19.40 18.83 17.96 17.96 16.47 18.43 14.80 14.89 # Checking swapping # possible swapping detected: E 10 E 10 # possible swapping detected: F 15 F 15 # possible swapping detected: E 19 E 19 # possible swapping detected: E 24 E 24 # possible swapping detected: D 35 D 35 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA S 1 S 1 49.024 0 0.068 0.106 51.885 0.000 0.000 51.885 LGA Q 2 Q 2 43.205 0 0.224 0.916 45.327 0.000 0.000 45.048 LGA E 3 E 3 41.761 0 0.058 1.117 43.928 0.000 0.000 43.928 LGA T 4 T 4 37.713 0 0.033 1.303 39.558 0.000 0.000 38.079 LGA R 5 R 5 35.494 0 0.046 1.009 41.461 0.000 0.000 41.461 LGA K 6 K 6 35.060 0 0.043 1.189 41.481 0.000 0.000 41.481 LGA K 7 K 7 32.279 0 0.061 0.646 37.691 0.000 0.000 37.691 LGA C 8 C 8 28.353 0 0.058 0.712 30.144 0.000 0.000 28.380 LGA T 9 T 9 27.506 0 0.018 0.923 30.462 0.000 0.000 29.734 LGA E 10 E 10 27.029 0 0.021 0.969 32.995 0.000 0.000 32.995 LGA M 11 M 11 22.882 0 0.055 0.966 26.337 0.000 0.000 26.337 LGA K 12 K 12 20.093 0 0.067 0.637 25.938 0.000 0.000 25.938 LGA K 13 K 13 20.174 0 0.047 0.889 28.248 0.000 0.000 28.248 LGA K 14 K 14 19.217 0 0.058 0.629 28.433 0.000 0.000 28.433 LGA F 15 F 15 14.363 0 0.449 0.825 20.089 0.000 0.000 20.089 LGA K 16 K 16 11.593 0 0.495 1.168 17.305 0.000 0.000 17.305 LGA N 17 N 17 5.583 0 0.665 0.576 11.768 9.091 4.545 9.545 LGA C 18 C 18 0.762 0 0.677 1.135 3.106 55.909 44.848 2.894 LGA E 19 E 19 2.954 0 0.271 0.685 7.318 41.818 20.000 7.318 LGA V 20 V 20 0.707 0 0.098 1.082 3.665 73.636 62.597 0.760 LGA R 21 R 21 0.647 0 0.061 1.029 5.553 90.909 55.041 3.304 LGA C 22 C 22 1.195 0 0.050 0.713 2.509 77.727 64.848 2.509 LGA D 23 D 23 1.697 0 0.034 0.997 2.491 44.545 46.364 2.491 LGA E 24 E 24 2.605 0 0.637 0.520 5.610 33.636 17.576 5.023 LGA S 25 S 25 2.194 0 0.585 0.549 3.955 41.364 32.424 3.955 LGA N 26 N 26 4.181 0 0.147 0.563 6.672 17.727 9.091 4.905 LGA H 27 H 27 1.003 0 0.357 1.116 7.483 66.818 32.727 7.483 LGA C 28 C 28 0.975 0 0.059 0.086 2.152 77.727 66.667 2.152 LGA V 29 V 29 0.539 0 0.092 0.986 2.955 74.091 63.377 2.200 LGA E 30 E 30 0.686 0 0.060 0.786 4.008 86.364 58.384 4.008 LGA V 31 V 31 0.558 0 0.052 0.190 1.283 77.727 79.740 0.455 LGA R 32 R 32 0.685 0 0.252 1.292 5.802 75.455 40.496 5.802 LGA C 33 C 33 1.867 0 0.486 0.556 3.045 48.636 40.000 3.045 LGA S 34 S 34 1.580 0 0.172 0.171 3.412 43.182 53.333 0.977 LGA D 35 D 35 2.606 0 0.636 0.503 2.930 35.909 34.318 2.475 LGA T 36 T 36 4.318 0 0.062 1.239 8.232 4.091 2.338 6.206 LGA K 37 K 37 6.677 0 0.624 1.713 13.147 0.455 0.202 13.147 LGA Y 38 Y 38 5.827 0 0.013 1.370 11.032 0.000 0.455 11.032 LGA T 39 T 39 10.984 0 0.139 1.149 13.135 0.000 0.000 12.231 LGA L 40 L 40 14.156 0 0.173 0.632 18.081 0.000 0.000 14.131 LGA C 41 C 41 16.794 0 0.481 1.352 20.366 0.000 0.000 16.804 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 41 164 164 100.00 335 335 100.00 41 41 SUMMARY(RMSD_GDC): 12.119 11.985 12.838 26.264 20.229 12.816 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 41 41 4.0 19 2.03 42.073 42.926 0.891 LGA_LOCAL RMSD: 2.033 Number of atoms: 19 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 19.812 Number of assigned atoms: 41 Std_ASGN_ATOMS RMSD: 12.119 Standard rmsd on all 41 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.486156 * X + 0.266360 * Y + 0.832289 * Z + -7.821650 Y_new = -0.794783 * X + 0.530702 * Y + 0.294406 * Z + 10.538337 Z_new = -0.363279 * X + -0.804617 * Y + 0.469703 * Z + -2.265820 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -1.021830 0.371785 -1.042404 [DEG: -58.5466 21.3017 -59.7253 ] ZXZ: 1.910791 1.081842 -2.717498 [DEG: 109.4802 61.9850 -155.7012 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0955TS122_1 REMARK 2: T0955.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS122_1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 41 41 4.0 19 2.03 42.926 12.12 REMARK ---------------------------------------------------------- MOLECULE T0955TS122_1 PFRMAT TS TARGET T0955 MODEL 1 PARENT N/A ATOM 1 CB SER 1 -23.904 27.537 -1.010 1.00 6.92 C ATOM 2 OG SER 1 -24.411 28.695 -1.652 1.00 7.58 O ATOM 4 C SER 1 -23.212 26.490 1.164 1.00 6.03 C ATOM 5 O SER 1 -22.000 26.267 1.275 1.00 5.51 O ATOM 8 N SER 1 -22.729 28.891 0.703 1.00 7.46 N ATOM 10 CA SER 1 -23.699 27.778 0.488 1.00 6.96 C ATOM 11 N GLN 2 -24.165 25.657 1.611 1.00 5.95 N ATOM 13 CA GLN 2 -23.913 24.366 2.291 1.00 5.33 C ATOM 14 CB GLN 2 -25.198 23.836 2.941 1.00 5.68 C ATOM 15 CG GLN 2 -25.691 24.646 4.136 1.00 6.20 C ATOM 16 CD GLN 2 -26.962 24.079 4.740 1.00 6.77 C ATOM 17 OE1 GLN 2 -28.068 24.458 4.354 1.00 6.70 O ATOM 18 NE2 GLN 2 -26.810 23.166 5.693 1.00 7.56 N ATOM 21 C GLN 2 -23.306 23.280 1.382 1.00 5.20 C ATOM 22 O GLN 2 -22.446 22.510 1.826 1.00 4.56 O ATOM 23 N GLU 3 -23.753 23.248 0.117 1.00 5.94 N ATOM 25 CA GLU 3 -23.299 22.283 -0.911 1.00 6.12 C ATOM 26 CB GLU 3 -24.216 22.330 -2.142 1.00 7.22 C ATOM 27 CG GLU 3 -25.626 21.793 -1.910 1.00 8.05 C ATOM 28 CD GLU 3 -26.491 21.860 -3.155 1.00 9.29 C ATOM 29 OE1 GLU 3 -27.168 22.891 -3.356 1.00 9.80 O ATOM 30 OE2 GLU 3 -26.497 20.882 -3.931 1.00 9.88 O ATOM 31 C GLU 3 -21.835 22.484 -1.344 1.00 5.64 C ATOM 32 O GLU 3 -21.101 21.503 -1.510 1.00 5.28 O ATOM 33 N THR 4 -21.424 23.754 -1.494 1.00 5.77 N ATOM 35 CA THR 4 -20.056 24.152 -1.896 1.00 5.59 C ATOM 36 CB THR 4 -19.992 25.670 -2.265 1.00 6.40 C ATOM 37 OG1 THR 4 -21.287 26.115 -2.689 1.00 6.90 O ATOM 39 CG2 THR 4 -19.001 25.918 -3.412 1.00 6.48 C ATOM 40 C THR 4 -19.033 23.825 -0.778 1.00 4.56 C ATOM 41 O THR 4 -17.914 23.381 -1.071 1.00 4.20 O ATOM 42 N ARG 5 -19.452 24.019 0.483 1.00 4.19 N ATOM 44 CA ARG 5 -18.637 23.760 1.690 1.00 3.46 C ATOM 45 CB ARG 5 -19.292 24.376 2.935 1.00 3.66 C ATOM 46 CG ARG 5 -19.263 25.905 2.982 1.00 4.07 C ATOM 47 CD ARG 5 -19.929 26.457 4.241 1.00 4.43 C ATOM 48 NE ARG 5 -19.160 26.184 5.460 1.00 4.97 N ATOM 50 CZ ARG 5 -19.514 26.554 6.691 1.00 5.53 C ATOM 51 NH1 ARG 5 -18.731 26.247 7.717 1.00 6.28 N ATOM 54 NH2 ARG 5 -20.638 27.229 6.911 1.00 5.50 N ATOM 57 C ARG 5 -18.367 22.261 1.923 1.00 2.74 C ATOM 58 O ARG 5 -17.228 21.874 2.212 1.00 2.27 O ATOM 59 N LYS 6 -19.415 21.437 1.758 1.00 3.03 N ATOM 61 CA LYS 6 -19.362 19.969 1.927 1.00 3.03 C ATOM 62 CB LYS 6 -20.776 19.372 1.960 1.00 3.88 C ATOM 63 CG LYS 6 -21.579 19.704 3.213 1.00 4.04 C ATOM 64 CD LYS 6 -22.967 19.074 3.165 1.00 4.94 C ATOM 65 CE LYS 6 -23.790 19.393 4.411 1.00 5.18 C ATOM 66 NZ LYS 6 -23.276 18.737 5.650 1.00 5.17 N ATOM 70 C LYS 6 -18.525 19.272 0.840 1.00 2.98 C ATOM 71 O LYS 6 -17.757 18.351 1.145 1.00 2.76 O ATOM 72 N LYS 7 -18.660 19.744 -0.410 1.00 3.47 N ATOM 74 CA LYS 7 -17.935 19.212 -1.584 1.00 3.73 C ATOM 75 CB LYS 7 -18.539 19.747 -2.889 1.00 4.75 C ATOM 76 CG LYS 7 -19.873 19.118 -3.274 1.00 5.65 C ATOM 77 CD LYS 7 -20.405 19.698 -4.574 1.00 6.65 C ATOM 78 CE LYS 7 -21.735 19.071 -4.956 1.00 7.57 C ATOM 79 NZ LYS 7 -22.267 19.630 -6.229 1.00 7.94 N ATOM 83 C LYS 7 -16.421 19.494 -1.549 1.00 2.99 C ATOM 84 O LYS 7 -15.624 18.592 -1.828 1.00 2.85 O ATOM 85 N CYS 8 -16.044 20.727 -1.177 1.00 2.75 N ATOM 87 CA CYS 8 -14.636 21.166 -1.078 1.00 2.49 C ATOM 88 CB CYS 8 -14.545 22.692 -0.945 1.00 3.16 C ATOM 89 SG CYS 8 -15.307 23.393 0.538 1.00 3.86 S ATOM 90 C CYS 8 -13.876 20.479 0.071 1.00 1.59 C ATOM 91 O CYS 8 -12.712 20.100 -0.096 1.00 1.53 O ATOM 92 N THR 9 -14.561 20.295 1.212 1.00 1.35 N ATOM 94 CA THR 9 -14.004 19.643 2.419 1.00 1.61 C ATOM 95 CB THR 9 -14.915 19.852 3.663 1.00 2.20 C ATOM 96 OG1 THR 9 -16.276 19.555 3.323 1.00 2.42 O ATOM 98 CG2 THR 9 -14.813 21.284 4.174 1.00 2.57 C ATOM 99 C THR 9 -13.739 18.139 2.209 1.00 1.79 C ATOM 100 O THR 9 -12.682 17.638 2.614 1.00 2.32 O ATOM 101 N GLU 10 -14.673 17.454 1.527 1.00 1.96 N ATOM 103 CA GLU 10 -14.590 16.010 1.214 1.00 2.74 C ATOM 104 CB GLU 10 -15.937 15.481 0.704 1.00 3.47 C ATOM 105 CG GLU 10 -16.997 15.303 1.785 1.00 4.03 C ATOM 106 CD GLU 10 -18.312 14.778 1.238 1.00 4.86 C ATOM 107 OE1 GLU 10 -19.171 15.601 0.857 1.00 5.44 O ATOM 108 OE2 GLU 10 -18.486 13.542 1.189 1.00 5.19 O ATOM 109 C GLU 10 -13.478 15.682 0.204 1.00 2.57 C ATOM 110 O GLU 10 -12.763 14.687 0.372 1.00 3.09 O ATOM 111 N MET 11 -13.333 16.537 -0.821 1.00 2.14 N ATOM 113 CA MET 11 -12.311 16.403 -1.882 1.00 2.24 C ATOM 114 CG MET 11 -13.803 16.984 -3.927 1.00 2.88 C ATOM 115 SD MET 11 -13.547 15.554 -5.015 1.00 3.82 S ATOM 116 CE MET 11 -13.174 16.366 -6.576 1.00 4.94 C ATOM 117 C MET 11 -10.886 16.638 -1.354 1.00 1.83 C ATOM 118 O MET 11 -9.952 15.939 -1.762 1.00 2.19 O ATOM 119 CB MET 11 -12.602 17.361 -3.049 1.00 2.71 C ATOM 120 N LYS 12 -10.745 17.598 -0.425 1.00 1.55 N ATOM 122 CA LYS 12 -9.458 17.959 0.207 1.00 2.15 C ATOM 123 CB LYS 12 -9.574 19.281 0.978 1.00 2.55 C ATOM 124 CG LYS 12 -9.561 20.525 0.099 1.00 2.84 C ATOM 125 CD LYS 12 -9.679 21.792 0.932 1.00 3.55 C ATOM 126 CE LYS 12 -9.667 23.033 0.055 1.00 4.23 C ATOM 127 NZ LYS 12 -9.782 24.281 0.859 1.00 5.06 N ATOM 131 C LYS 12 -8.901 16.857 1.124 1.00 2.84 C ATOM 132 O LYS 12 -7.707 16.544 1.046 1.00 3.40 O ATOM 133 N LYS 13 -9.762 16.281 1.980 1.00 3.07 N ATOM 135 CA LYS 13 -9.385 15.195 2.908 1.00 4.08 C ATOM 136 CB LYS 13 -10.396 15.039 4.067 1.00 4.51 C ATOM 137 CG LYS 13 -11.889 14.796 3.707 1.00 4.38 C ATOM 138 CD LYS 13 -12.756 14.479 4.941 1.00 4.94 C ATOM 139 CE LYS 13 -13.551 15.686 5.482 1.00 4.90 C ATOM 140 NZ LYS 13 -14.626 16.149 4.559 1.00 5.61 N ATOM 144 C LYS 13 -9.085 13.838 2.234 1.00 4.39 C ATOM 145 O LYS 13 -8.119 13.165 2.607 1.00 5.14 O ATOM 146 N LYS 14 -9.917 13.463 1.250 1.00 4.00 N ATOM 148 CA LYS 14 -9.795 12.199 0.488 1.00 4.50 C ATOM 149 CB LYS 14 -11.083 11.909 -0.296 1.00 4.54 C ATOM 150 CG LYS 14 -12.272 11.494 0.564 1.00 5.15 C ATOM 151 CD LYS 14 -13.503 11.227 -0.285 1.00 5.46 C ATOM 152 CE LYS 14 -14.688 10.814 0.573 1.00 6.15 C ATOM 153 NZ LYS 14 -15.902 10.549 -0.247 1.00 6.59 N ATOM 157 C LYS 14 -8.576 12.111 -0.454 1.00 4.40 C ATOM 158 O LYS 14 -7.885 11.088 -0.465 1.00 5.10 O ATOM 159 N PHE 15 -8.339 13.170 -1.243 1.00 3.66 N ATOM 161 CA PHE 15 -7.210 13.265 -2.195 1.00 3.71 C ATOM 162 CB PHE 15 -7.454 14.396 -3.224 1.00 3.21 C ATOM 163 CG PHE 15 -8.375 14.017 -4.384 1.00 3.46 C ATOM 164 CD1 PHE 15 -7.839 13.523 -5.599 1.00 4.10 C ATOM 165 CD2 PHE 15 -9.778 14.185 -4.287 1.00 3.70 C ATOM 166 CE1 PHE 15 -8.682 13.201 -6.698 1.00 4.73 C ATOM 167 CE2 PHE 15 -10.634 13.867 -5.377 1.00 4.41 C ATOM 168 CZ PHE 15 -10.084 13.374 -6.586 1.00 4.83 C ATOM 169 C PHE 15 -5.813 13.416 -1.566 1.00 4.23 C ATOM 170 O PHE 15 -4.843 12.839 -2.071 1.00 4.68 O ATOM 171 N LYS 16 -5.734 14.178 -0.465 1.00 4.39 N ATOM 173 CA LYS 16 -4.478 14.446 0.264 1.00 5.24 C ATOM 174 CB LYS 16 -4.440 15.905 0.756 1.00 6.15 C ATOM 175 CG LYS 16 -4.314 16.950 -0.348 1.00 6.40 C ATOM 176 CD LYS 16 -4.284 18.362 0.226 1.00 7.42 C ATOM 177 CE LYS 16 -4.158 19.425 -0.862 1.00 7.94 C ATOM 178 NZ LYS 16 -2.832 19.422 -1.550 1.00 8.61 N ATOM 182 C LYS 16 -4.196 13.458 1.422 1.00 5.35 C ATOM 183 O LYS 16 -4.513 13.734 2.590 1.00 5.48 O ATOM 184 N ASN 17 -3.649 12.288 1.059 1.00 5.55 N ATOM 186 CA ASN 17 -3.281 11.203 1.991 1.00 5.71 C ATOM 187 CB ASN 17 -4.327 10.069 1.968 1.00 6.38 C ATOM 188 CG ASN 17 -5.642 10.463 2.630 1.00 6.95 C ATOM 189 OD1 ASN 17 -5.839 10.240 3.826 1.00 7.35 O ATOM 190 ND2 ASN 17 -6.553 11.037 1.850 1.00 7.21 N ATOM 193 C ASN 17 -1.910 10.637 1.597 1.00 5.09 C ATOM 194 O ASN 17 -1.521 10.731 0.428 1.00 4.66 O ATOM 195 N CYS 18 -1.188 10.077 2.579 1.00 5.40 N ATOM 197 CA CYS 18 0.147 9.479 2.387 1.00 5.30 C ATOM 198 CB CYS 18 1.171 10.158 3.313 1.00 5.99 C ATOM 199 SG CYS 18 2.895 9.667 3.046 1.00 6.51 S ATOM 200 C CYS 18 0.097 7.960 2.656 1.00 5.17 C ATOM 201 O CYS 18 1.080 7.246 2.407 1.00 5.61 O ATOM 202 N GLU 19 -1.070 7.483 3.113 1.00 4.73 N ATOM 204 CA GLU 19 -1.332 6.064 3.438 1.00 4.53 C ATOM 205 CB GLU 19 -2.440 5.938 4.510 1.00 5.06 C ATOM 206 CG GLU 19 -3.735 6.751 4.285 1.00 5.67 C ATOM 207 CD GLU 19 -4.749 6.552 5.396 1.00 6.29 C ATOM 208 OE1 GLU 19 -4.714 7.318 6.381 1.00 6.89 O ATOM 209 OE2 GLU 19 -5.584 5.629 5.281 1.00 6.33 O ATOM 210 C GLU 19 -1.627 5.158 2.220 1.00 3.56 C ATOM 211 O GLU 19 -2.167 5.632 1.213 1.00 3.14 O ATOM 212 N VAL 20 -1.267 3.870 2.336 1.00 3.25 N ATOM 214 CA VAL 20 -1.459 2.855 1.280 1.00 2.38 C ATOM 215 CB VAL 20 -0.068 2.166 0.877 1.00 2.42 C ATOM 216 CG1 VAL 20 0.561 1.388 2.053 1.00 2.69 C ATOM 217 CG2 VAL 20 -0.206 1.291 -0.381 1.00 3.06 C ATOM 218 C VAL 20 -2.553 1.834 1.695 1.00 2.25 C ATOM 219 O VAL 20 -2.579 1.376 2.846 1.00 2.72 O ATOM 220 N ARG 21 -3.447 1.519 0.747 1.00 1.87 N ATOM 222 CA ARG 21 -4.565 0.574 0.932 1.00 2.20 C ATOM 223 CB ARG 21 -5.926 1.253 0.639 1.00 2.96 C ATOM 224 CG ARG 21 -6.030 2.103 -0.647 1.00 3.38 C ATOM 225 CD ARG 21 -7.421 2.699 -0.805 1.00 4.26 C ATOM 226 NE ARG 21 -7.539 3.505 -2.022 1.00 4.79 N ATOM 228 CZ ARG 21 -8.645 4.134 -2.421 1.00 5.65 C ATOM 229 NH1 ARG 21 -8.627 4.836 -3.547 1.00 6.16 N ATOM 232 NH2 ARG 21 -9.767 4.073 -1.711 1.00 6.08 N ATOM 235 C ARG 21 -4.405 -0.719 0.109 1.00 1.92 C ATOM 236 O ARG 21 -3.888 -0.677 -1.015 1.00 1.69 O ATOM 237 N CYS 22 -4.850 -1.846 0.682 1.00 2.25 N ATOM 239 CA CYS 22 -4.784 -3.176 0.049 1.00 2.51 C ATOM 240 CB CYS 22 -4.058 -4.175 0.964 1.00 2.44 C ATOM 241 SG CYS 22 -4.753 -4.325 2.630 1.00 3.13 S ATOM 242 C CYS 22 -6.181 -3.709 -0.314 1.00 3.35 C ATOM 243 O CYS 22 -7.130 -3.553 0.467 1.00 4.05 O ATOM 244 N ASP 23 -6.290 -4.308 -1.509 1.00 3.58 N ATOM 246 CA ASP 23 -7.541 -4.883 -2.040 1.00 4.39 C ATOM 247 CB ASP 23 -7.893 -4.262 -3.420 1.00 4.41 C ATOM 248 CG ASP 23 -6.712 -4.239 -4.399 1.00 3.54 C ATOM 249 OD1 ASP 23 -5.987 -3.220 -4.436 1.00 2.96 O ATOM 250 OD2 ASP 23 -6.523 -5.230 -5.137 1.00 3.66 O ATOM 251 C ASP 23 -7.504 -6.427 -2.104 1.00 5.02 C ATOM 252 O ASP 23 -6.453 -7.026 -1.849 1.00 5.49 O ATOM 253 N GLU 24 -8.646 -7.045 -2.442 1.00 5.28 N ATOM 255 CA GLU 24 -8.803 -8.511 -2.555 1.00 5.91 C ATOM 256 CB GLU 24 -10.252 -8.938 -2.217 1.00 6.78 C ATOM 257 CG GLU 24 -11.398 -8.154 -2.895 1.00 7.20 C ATOM 258 CD GLU 24 -12.770 -8.656 -2.492 1.00 8.11 C ATOM 259 OE1 GLU 24 -13.298 -9.561 -3.172 1.00 8.47 O ATOM 260 OE2 GLU 24 -13.323 -8.147 -1.494 1.00 8.62 O ATOM 261 C GLU 24 -8.344 -9.097 -3.910 1.00 5.91 C ATOM 262 O GLU 24 -8.312 -8.378 -4.915 1.00 6.21 O ATOM 263 N SER 25 -7.995 -10.398 -3.913 1.00 5.90 N ATOM 265 CA SER 25 -7.515 -11.187 -5.082 1.00 6.16 C ATOM 266 CB SER 25 -8.609 -11.360 -6.154 1.00 6.99 C ATOM 267 OG SER 25 -9.739 -12.036 -5.628 1.00 7.44 O ATOM 269 C SER 25 -6.211 -10.687 -5.734 1.00 5.72 C ATOM 270 O SER 25 -6.001 -9.474 -5.854 1.00 5.87 O ATOM 271 N ASN 26 -5.354 -11.637 -6.155 1.00 5.46 N ATOM 273 CA ASN 26 -4.026 -11.430 -6.806 1.00 5.39 C ATOM 274 CB ASN 26 -4.145 -11.316 -8.358 1.00 5.96 C ATOM 275 CG ASN 26 -5.043 -10.162 -8.822 1.00 6.26 C ATOM 276 OD1 ASN 26 -4.572 -9.045 -9.043 1.00 6.52 O ATOM 277 ND2 ASN 26 -6.334 -10.439 -8.980 1.00 6.51 N ATOM 280 C ASN 26 -3.055 -10.368 -6.211 1.00 5.42 C ATOM 281 O ASN 26 -1.994 -10.088 -6.789 1.00 5.65 O ATOM 282 N HIS 27 -3.413 -9.844 -5.024 1.00 5.45 N ATOM 284 CA HIS 27 -2.676 -8.816 -4.239 1.00 5.69 C ATOM 285 CG HIS 27 -1.213 -8.778 -2.122 1.00 6.19 C ATOM 286 CD2 HIS 27 -0.132 -8.073 -1.708 1.00 6.71 C ATOM 287 ND1 HIS 27 -2.084 -8.801 -1.052 1.00 6.08 N ATOM 289 CE1 HIS 27 -1.554 -8.140 -0.038 1.00 6.52 C ATOM 290 NE2 HIS 27 -0.369 -7.690 -0.410 1.00 6.86 N ATOM 292 C HIS 27 -2.202 -7.569 -5.032 1.00 5.40 C ATOM 293 O HIS 27 -1.248 -7.646 -5.821 1.00 5.67 O ATOM 294 CB HIS 27 -1.512 -9.458 -3.430 1.00 6.12 C ATOM 295 N CYS 28 -2.919 -6.451 -4.843 1.00 5.02 N ATOM 297 CA CYS 28 -2.634 -5.155 -5.490 1.00 4.73 C ATOM 298 CB CYS 28 -3.648 -4.860 -6.608 1.00 5.33 C ATOM 299 SG CYS 28 -3.673 -6.087 -7.936 1.00 6.14 S ATOM 300 C CYS 28 -2.676 -4.033 -4.441 1.00 3.79 C ATOM 301 O CYS 28 -3.561 -4.026 -3.574 1.00 3.62 O ATOM 302 N VAL 29 -1.698 -3.119 -4.510 1.00 3.34 N ATOM 304 CA VAL 29 -1.576 -1.968 -3.590 1.00 2.46 C ATOM 305 CB VAL 29 -0.205 -1.962 -2.797 1.00 2.29 C ATOM 306 CG1 VAL 29 -0.247 -3.001 -1.687 1.00 2.86 C ATOM 307 CG2 VAL 29 1.000 -2.240 -3.725 1.00 2.77 C ATOM 308 C VAL 29 -1.815 -0.606 -4.279 1.00 2.19 C ATOM 309 O VAL 29 -1.324 -0.377 -5.394 1.00 2.57 O ATOM 310 N GLU 30 -2.595 0.262 -3.618 1.00 1.75 N ATOM 312 CA GLU 30 -2.928 1.614 -4.108 1.00 1.63 C ATOM 313 CB GLU 30 -4.444 1.760 -4.345 1.00 2.37 C ATOM 314 CG GLU 30 -4.991 0.935 -5.507 1.00 2.88 C ATOM 315 CD GLU 30 -6.486 1.113 -5.700 1.00 3.68 C ATOM 316 OE1 GLU 30 -6.885 2.020 -6.462 1.00 4.20 O ATOM 317 OE2 GLU 30 -7.262 0.346 -5.093 1.00 4.11 O ATOM 318 C GLU 30 -2.447 2.676 -3.106 1.00 1.06 C ATOM 319 O GLU 30 -2.706 2.558 -1.900 1.00 1.19 O ATOM 320 N VAL 31 -1.723 3.685 -3.614 1.00 0.95 N ATOM 322 CA VAL 31 -1.171 4.797 -2.809 1.00 1.34 C ATOM 323 CB VAL 31 0.410 4.911 -2.934 1.00 1.75 C ATOM 324 CG1 VAL 31 1.003 5.704 -1.756 1.00 2.14 C ATOM 325 CG2 VAL 31 1.059 3.527 -3.002 1.00 2.70 C ATOM 326 C VAL 31 -1.831 6.117 -3.270 1.00 1.83 C ATOM 327 O VAL 31 -2.139 6.278 -4.459 1.00 1.78 O ATOM 328 N ARG 32 -2.064 7.025 -2.310 1.00 2.50 N ATOM 330 CA ARG 32 -2.671 8.348 -2.548 1.00 3.16 C ATOM 331 CB ARG 32 -3.807 8.619 -1.549 1.00 3.80 C ATOM 332 CG ARG 32 -5.047 7.753 -1.744 1.00 4.17 C ATOM 333 CD ARG 32 -6.123 8.089 -0.724 1.00 4.90 C ATOM 334 NE ARG 32 -7.324 7.269 -0.898 1.00 5.05 N ATOM 336 CZ ARG 32 -8.424 7.348 -0.147 1.00 5.69 C ATOM 337 NH1 ARG 32 -9.450 6.549 -0.404 1.00 6.02 N ATOM 340 NH2 ARG 32 -8.511 8.216 0.858 1.00 6.21 N ATOM 343 C ARG 32 -1.606 9.450 -2.441 1.00 3.60 C ATOM 344 O ARG 32 -0.675 9.333 -1.634 1.00 3.76 O ATOM 345 N CYS 33 -1.729 10.484 -3.285 1.00 3.91 N ATOM 347 CA CYS 33 -0.801 11.631 -3.331 1.00 4.46 C ATOM 348 CB CYS 33 0.097 11.547 -4.575 1.00 4.36 C ATOM 349 SG CYS 33 1.121 10.059 -4.659 1.00 4.47 S ATOM 350 C CYS 33 -1.561 12.965 -3.343 1.00 5.13 C ATOM 351 O CYS 33 -2.735 13.004 -3.727 1.00 5.26 O ATOM 352 N SER 34 -0.875 14.043 -2.933 1.00 5.75 N ATOM 354 CA SER 34 -1.422 15.413 -2.884 1.00 6.48 C ATOM 355 CB SER 34 -0.845 16.172 -1.684 1.00 7.09 C ATOM 356 OG SER 34 -1.155 15.517 -0.466 1.00 7.17 O ATOM 358 C SER 34 -1.091 16.162 -4.187 1.00 6.71 C ATOM 359 O SER 34 -1.888 16.987 -4.653 1.00 6.57 O ATOM 360 N ASP 35 0.086 15.856 -4.751 1.00 7.24 N ATOM 362 CA ASP 35 0.594 16.437 -6.009 1.00 7.56 C ATOM 363 CB ASP 35 1.907 17.232 -5.768 1.00 8.33 C ATOM 364 CG ASP 35 2.950 16.459 -4.950 1.00 8.79 C ATOM 365 OD1 ASP 35 3.805 15.782 -5.561 1.00 8.91 O ATOM 366 OD2 ASP 35 2.920 16.545 -3.702 1.00 9.25 O ATOM 367 C ASP 35 0.781 15.324 -7.064 1.00 6.98 C ATOM 368 O ASP 35 0.633 14.141 -6.735 1.00 7.25 O ATOM 369 N THR 36 1.101 15.707 -8.310 1.00 6.37 N ATOM 371 CA THR 36 1.310 14.764 -9.431 1.00 5.75 C ATOM 372 CB THR 36 0.830 15.381 -10.816 1.00 5.49 C ATOM 373 OG1 THR 36 1.119 14.474 -11.888 1.00 5.66 O ATOM 375 CG2 THR 36 1.478 16.755 -11.101 1.00 5.99 C ATOM 376 C THR 36 2.747 14.174 -9.501 1.00 5.64 C ATOM 377 O THR 36 3.721 14.908 -9.729 1.00 6.04 O ATOM 378 N LYS 37 2.850 12.863 -9.240 1.00 5.27 N ATOM 380 CA LYS 37 4.119 12.108 -9.257 1.00 5.22 C ATOM 381 CB LYS 37 4.467 11.567 -7.857 1.00 5.64 C ATOM 382 CG LYS 37 4.785 12.629 -6.810 1.00 6.10 C ATOM 383 CD LYS 37 5.195 11.985 -5.490 1.00 6.82 C ATOM 384 CE LYS 37 5.463 13.021 -4.401 1.00 7.52 C ATOM 385 NZ LYS 37 4.223 13.687 -3.902 1.00 7.78 N ATOM 389 C LYS 37 4.029 10.937 -10.246 1.00 4.53 C ATOM 390 O LYS 37 4.999 10.650 -10.956 1.00 5.00 O ATOM 391 N TYR 38 2.860 10.277 -10.278 1.00 3.65 N ATOM 393 CA TYR 38 2.580 9.125 -11.155 1.00 3.09 C ATOM 394 CB TYR 38 2.041 7.935 -10.314 1.00 3.05 C ATOM 395 CG TYR 38 2.165 6.527 -10.922 1.00 3.58 C ATOM 396 CD1 TYR 38 3.307 5.724 -10.681 1.00 4.51 C ATOM 397 CE1 TYR 38 3.411 4.408 -11.215 1.00 5.38 C ATOM 398 CD2 TYR 38 1.125 5.976 -11.713 1.00 3.68 C ATOM 399 CE2 TYR 38 1.221 4.662 -12.249 1.00 4.72 C ATOM 400 CZ TYR 38 2.366 3.890 -11.994 1.00 5.48 C ATOM 401 OH TYR 38 2.465 2.617 -12.510 1.00 6.58 O ATOM 403 C TYR 38 1.557 9.526 -12.236 1.00 2.54 C ATOM 404 O TYR 38 0.700 10.384 -11.990 1.00 2.62 O ATOM 405 N THR 39 1.669 8.901 -13.418 1.00 2.46 N ATOM 407 CA THR 39 0.786 9.146 -14.578 1.00 2.45 C ATOM 408 CB THR 39 1.617 9.380 -15.913 1.00 2.67 C ATOM 409 OG1 THR 39 0.730 9.510 -17.032 1.00 3.34 O ATOM 411 CG2 THR 39 2.639 8.250 -16.178 1.00 2.66 C ATOM 412 C THR 39 -0.287 8.042 -14.752 1.00 2.77 C ATOM 413 O THR 39 -0.008 6.861 -14.508 1.00 3.04 O ATOM 414 N LEU 40 -1.497 8.453 -15.159 1.00 3.19 N ATOM 416 CA LEU 40 -2.646 7.555 -15.382 1.00 3.90 C ATOM 417 CB LEU 40 -3.879 8.063 -14.595 1.00 4.16 C ATOM 418 CG LEU 40 -4.954 7.130 -13.993 1.00 4.31 C ATOM 419 CD1 LEU 40 -5.406 7.694 -12.656 1.00 4.86 C ATOM 420 CD2 LEU 40 -6.157 6.941 -14.932 1.00 5.03 C ATOM 421 C LEU 40 -2.961 7.479 -16.889 1.00 4.69 C ATOM 422 O LEU 40 -2.738 8.452 -17.618 1.00 5.39 O ATOM 423 N CYS 41 -3.494 6.322 -17.325 1.00 4.67 N ATOM 425 CA CYS 41 -3.890 5.983 -18.722 1.00 5.43 C ATOM 426 CB CYS 41 -5.244 6.615 -19.107 1.00 5.86 C ATOM 427 SG CYS 41 -5.282 8.425 -19.104 1.00 6.38 S ATOM 428 C CYS 41 -2.861 6.206 -19.842 1.00 5.32 C ATOM 429 O CYS 41 -2.233 7.287 -19.884 1.00 5.70 O ATOM 430 OXT CYS 41 -2.698 5.284 -20.668 1.00 4.98 O TER END