####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 41 ( 335), selected 41 , name T0955TS112_1 # Molecule2: number of CA atoms 41 ( 665), selected 41 , name T0955.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS112_1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 41 1 - 41 2.22 2.22 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 39 2 - 40 1.89 2.26 LCS_AVERAGE: 92.86 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 19 2 - 20 0.94 2.72 LCS_AVERAGE: 33.67 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 41 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 1 S 1 3 25 41 3 3 3 4 10 17 32 37 38 39 41 41 41 41 41 41 41 41 41 41 LCS_GDT Q 2 Q 2 19 39 41 11 17 26 31 34 36 38 39 39 39 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 3 E 3 19 39 41 11 17 27 31 34 36 38 39 39 39 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 4 T 4 19 39 41 11 18 27 31 34 36 38 39 39 39 41 41 41 41 41 41 41 41 41 41 LCS_GDT R 5 R 5 19 39 41 11 18 27 31 34 36 38 39 39 39 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 6 K 6 19 39 41 11 18 27 31 34 36 38 39 39 39 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 7 K 7 19 39 41 11 18 27 31 34 36 38 39 39 39 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 8 C 8 19 39 41 11 18 27 31 34 36 38 39 39 39 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 9 T 9 19 39 41 11 18 27 31 34 36 38 39 39 39 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 10 E 10 19 39 41 11 18 27 31 34 36 38 39 39 39 41 41 41 41 41 41 41 41 41 41 LCS_GDT M 11 M 11 19 39 41 11 18 27 31 34 36 38 39 39 39 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 12 K 12 19 39 41 11 18 27 31 34 36 38 39 39 39 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 13 K 13 19 39 41 9 18 27 31 34 36 38 39 39 39 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 14 K 14 19 39 41 5 18 27 31 34 36 38 39 39 39 41 41 41 41 41 41 41 41 41 41 LCS_GDT F 15 F 15 19 39 41 3 18 27 31 34 36 38 39 39 39 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 16 K 16 19 39 41 3 14 27 31 34 36 38 39 39 39 41 41 41 41 41 41 41 41 41 41 LCS_GDT N 17 N 17 19 39 41 3 14 24 31 34 36 38 39 39 39 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 18 C 18 19 39 41 3 17 24 31 34 36 38 39 39 39 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 19 E 19 19 39 41 3 17 27 31 34 36 38 39 39 39 41 41 41 41 41 41 41 41 41 41 LCS_GDT V 20 V 20 19 39 41 3 14 21 30 34 36 38 39 39 39 41 41 41 41 41 41 41 41 41 41 LCS_GDT R 21 R 21 7 39 41 3 14 19 30 34 36 38 39 39 39 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 22 C 22 7 39 41 3 14 17 27 34 36 38 39 39 39 41 41 41 41 41 41 41 41 41 41 LCS_GDT D 23 D 23 7 39 41 3 6 17 27 34 36 38 39 39 39 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 24 E 24 3 39 41 3 18 27 31 34 36 38 39 39 39 41 41 41 41 41 41 41 41 41 41 LCS_GDT S 25 S 25 6 39 41 3 4 10 18 31 36 38 39 39 39 41 41 41 41 41 41 41 41 41 41 LCS_GDT N 26 N 26 6 39 41 3 4 8 12 24 36 38 39 39 39 41 41 41 41 41 41 41 41 41 41 LCS_GDT H 27 H 27 6 39 41 3 4 11 25 32 36 38 39 39 39 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 28 C 28 12 39 41 6 18 27 31 34 36 38 39 39 39 41 41 41 41 41 41 41 41 41 41 LCS_GDT V 29 V 29 12 39 41 9 18 27 31 34 36 38 39 39 39 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 30 E 30 12 39 41 9 18 27 31 34 36 38 39 39 39 41 41 41 41 41 41 41 41 41 41 LCS_GDT V 31 V 31 12 39 41 9 18 27 31 34 36 38 39 39 39 41 41 41 41 41 41 41 41 41 41 LCS_GDT R 32 R 32 12 39 41 10 18 27 31 34 36 38 39 39 39 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 33 C 33 12 39 41 7 18 27 31 34 36 38 39 39 39 41 41 41 41 41 41 41 41 41 41 LCS_GDT S 34 S 34 12 39 41 3 14 27 31 34 36 38 39 39 39 41 41 41 41 41 41 41 41 41 41 LCS_GDT D 35 D 35 12 39 41 4 14 24 31 34 36 38 39 39 39 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 36 T 36 12 39 41 3 18 27 31 34 36 38 39 39 39 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 37 K 37 12 39 41 4 18 27 31 34 36 38 39 39 39 41 41 41 41 41 41 41 41 41 41 LCS_GDT Y 38 Y 38 12 39 41 4 17 27 31 34 36 38 39 39 39 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 39 T 39 12 39 41 5 17 27 31 34 36 38 39 39 39 41 41 41 41 41 41 41 41 41 41 LCS_GDT L 40 L 40 12 39 41 3 13 17 27 34 36 38 39 39 39 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 41 C 41 4 15 41 3 5 8 15 25 32 36 37 38 39 41 41 41 41 41 41 41 41 41 41 LCS_AVERAGE LCS_A: 75.51 ( 33.67 92.86 100.00 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 11 18 27 31 34 36 38 39 39 39 41 41 41 41 41 41 41 41 41 41 GDT PERCENT_AT 26.83 43.90 65.85 75.61 82.93 87.80 92.68 95.12 95.12 95.12 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 GDT RMS_LOCAL 0.28 0.67 0.96 1.12 1.36 1.46 1.74 1.89 1.89 1.89 2.22 2.22 2.22 2.22 2.22 2.22 2.22 2.22 2.22 2.22 GDT RMS_ALL_AT 2.79 2.25 2.26 2.25 2.26 2.25 2.23 2.26 2.26 2.26 2.22 2.22 2.22 2.22 2.22 2.22 2.22 2.22 2.22 2.22 # Checking swapping # possible swapping detected: D 23 D 23 # possible swapping detected: E 30 E 30 # possible swapping detected: Y 38 Y 38 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA S 1 S 1 5.796 0 0.497 0.903 8.599 0.455 0.303 8.599 LGA Q 2 Q 2 1.954 0 0.275 1.340 3.607 48.636 46.061 1.130 LGA E 3 E 3 1.603 0 0.083 1.113 4.702 58.182 33.939 3.729 LGA T 4 T 4 1.127 0 0.081 1.234 2.460 73.636 62.338 2.460 LGA R 5 R 5 0.879 0 0.037 1.038 4.717 86.364 49.587 4.717 LGA K 6 K 6 0.206 0 0.058 1.322 7.510 95.455 57.172 7.510 LGA K 7 K 7 0.505 0 0.077 1.254 3.256 95.455 66.869 3.256 LGA C 8 C 8 0.232 0 0.063 0.152 1.063 100.000 94.242 1.063 LGA T 9 T 9 0.500 0 0.029 0.103 1.244 86.364 82.078 0.979 LGA E 10 E 10 0.958 0 0.075 0.606 2.183 77.727 66.263 1.236 LGA M 11 M 11 0.886 0 0.108 0.139 1.522 81.818 73.864 1.522 LGA K 12 K 12 0.778 0 0.098 1.094 5.933 77.727 49.091 5.933 LGA K 13 K 13 0.767 0 0.052 0.646 3.245 77.727 62.828 2.924 LGA K 14 K 14 1.345 0 0.103 0.970 6.350 61.818 41.414 6.350 LGA F 15 F 15 1.304 0 0.329 0.640 3.559 45.000 50.248 2.984 LGA K 16 K 16 2.221 0 0.286 1.230 5.332 45.455 31.111 5.332 LGA N 17 N 17 1.629 0 0.595 1.021 4.478 62.273 44.773 2.480 LGA C 18 C 18 1.479 0 0.106 0.817 4.674 58.182 47.576 4.674 LGA E 19 E 19 1.151 0 0.184 0.478 2.714 78.182 64.040 2.270 LGA V 20 V 20 2.046 0 0.046 1.060 4.963 38.636 35.584 1.439 LGA R 21 R 21 2.437 0 0.030 1.547 8.655 35.455 20.331 5.865 LGA C 22 C 22 3.209 0 0.087 0.170 3.638 25.455 23.333 3.638 LGA D 23 D 23 3.162 0 0.659 0.671 4.764 16.364 15.909 2.580 LGA E 24 E 24 1.756 0 0.406 0.723 5.967 48.636 27.475 5.967 LGA S 25 S 25 4.015 0 0.594 0.810 5.861 12.273 9.091 5.861 LGA N 26 N 26 4.719 0 0.243 1.059 7.169 8.182 4.091 7.014 LGA H 27 H 27 3.288 0 0.083 0.442 6.360 26.364 11.455 6.360 LGA C 28 C 28 0.364 0 0.031 0.069 1.368 82.727 76.970 1.048 LGA V 29 V 29 0.773 0 0.157 0.215 1.455 73.636 70.130 1.315 LGA E 30 E 30 0.927 0 0.073 0.619 2.683 73.636 68.485 2.683 LGA V 31 V 31 0.694 0 0.119 0.180 0.962 81.818 81.818 0.899 LGA R 32 R 32 0.930 0 0.082 1.350 2.942 77.727 57.686 2.942 LGA C 33 C 33 0.372 0 0.516 0.774 2.643 72.727 67.879 1.796 LGA S 34 S 34 2.155 0 0.506 0.867 5.130 26.818 28.788 2.758 LGA D 35 D 35 2.357 0 0.086 1.005 4.507 38.636 28.636 4.507 LGA T 36 T 36 1.158 0 0.064 1.143 3.037 65.455 50.909 3.037 LGA K 37 K 37 0.980 0 0.148 1.538 7.572 70.000 44.444 7.572 LGA Y 38 Y 38 0.971 0 0.088 1.256 7.914 70.000 39.091 7.914 LGA T 39 T 39 1.561 0 0.195 1.014 4.259 54.545 49.091 0.925 LGA L 40 L 40 3.392 0 0.498 0.857 4.718 13.182 11.818 3.576 LGA C 41 C 41 6.037 0 0.469 1.124 9.986 0.000 0.000 5.211 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 41 164 164 100.00 335 335 100.00 41 41 SUMMARY(RMSD_GDC): 2.225 2.347 3.050 56.652 45.044 26.652 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 41 41 4.0 39 1.89 78.659 86.534 1.957 LGA_LOCAL RMSD: 1.893 Number of atoms: 39 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 2.262 Number of assigned atoms: 41 Std_ASGN_ATOMS RMSD: 2.225 Standard rmsd on all 41 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.564637 * X + -0.694253 * Y + -0.446315 * Z + 11.944339 Y_new = 0.807264 * X + 0.352002 * Y + 0.473730 * Z + -58.185776 Z_new = -0.171784 * X + -0.627780 * Y + 0.759199 * Z + 15.064096 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 0.960442 0.172641 -0.690928 [DEG: 55.0293 9.8916 -39.5873 ] ZXZ: -2.385983 0.708715 -2.874493 [DEG: -136.7067 40.6064 -164.6963 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0955TS112_1 REMARK 2: T0955.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS112_1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 41 41 4.0 39 1.89 86.534 2.22 REMARK ---------------------------------------------------------- MOLECULE T0955TS112_1 PFRMAT TS TARGET T0955 MODEL 1 PARENT N/A ATOM 1 N SER 1 -4.144 -12.054 -0.327 1.00 1.64 N ATOM 2 CA SER 1 -4.393 -11.538 1.050 1.00 1.22 C ATOM 3 CB SER 1 -5.425 -12.342 1.853 1.00 1.53 C ATOM 4 OG SER 1 -5.823 -11.789 3.144 1.00 1.96 O ATOM 5 C SER 1 -3.122 -11.279 1.845 1.00 1.05 C ATOM 6 O SER 1 -2.600 -10.130 1.975 1.00 1.02 O ATOM 7 N GLN 2 -2.447 -12.325 2.408 1.00 1.07 N ATOM 8 CA GLN 2 -1.484 -12.154 3.525 1.00 1.03 C ATOM 9 CB GLN 2 -1.155 -13.473 4.173 1.00 1.21 C ATOM 10 CG GLN 2 -2.261 -14.034 5.177 1.00 1.95 C ATOM 11 CD GLN 2 -2.795 -13.033 6.202 1.00 2.28 C ATOM 12 OE1 GLN 2 -2.092 -12.119 6.638 1.00 2.68 O ATOM 13 NE2 GLN 2 -4.077 -13.247 6.688 1.00 2.61 N ATOM 14 C GLN 2 -0.224 -11.434 3.014 1.00 0.94 C ATOM 15 O GLN 2 0.263 -10.469 3.620 1.00 0.95 O ATOM 16 N GLU 3 0.277 -11.862 1.837 1.00 0.93 N ATOM 17 CA GLU 3 1.388 -11.229 1.186 1.00 0.90 C ATOM 18 CB GLU 3 1.932 -12.177 0.148 1.00 0.99 C ATOM 19 CG GLU 3 2.553 -13.382 0.777 1.00 1.10 C ATOM 20 CD GLU 3 2.857 -14.396 -0.255 1.00 1.92 C ATOM 21 OE1 GLU 3 2.075 -15.379 -0.339 1.00 2.49 O ATOM 22 OE2 GLU 3 3.983 -14.448 -0.812 1.00 2.74 O ATOM 23 C GLU 3 1.141 -9.747 0.761 1.00 0.81 C ATOM 24 O GLU 3 1.882 -8.831 0.981 1.00 0.83 O ATOM 25 N THR 4 -0.048 -9.468 0.257 1.00 0.76 N ATOM 26 CA THR 4 -0.531 -8.127 -0.034 1.00 0.67 C ATOM 27 CB THR 4 -1.967 -8.074 -0.661 1.00 0.65 C ATOM 28 OG1 THR 4 -2.231 -9.062 -1.688 1.00 1.16 O ATOM 29 CG2 THR 4 -2.303 -6.663 -1.251 1.00 0.91 C ATOM 30 C THR 4 -0.636 -7.209 1.202 1.00 0.65 C ATOM 31 O THR 4 -0.456 -5.983 1.149 1.00 0.66 O ATOM 32 N ARG 5 -1.042 -7.776 2.384 1.00 0.72 N ATOM 33 CA ARG 5 -1.118 -7.025 3.623 1.00 0.74 C ATOM 34 CB ARG 5 -1.883 -7.758 4.710 1.00 0.87 C ATOM 35 CG ARG 5 -3.387 -7.729 4.559 1.00 0.94 C ATOM 36 CD ARG 5 -4.147 -8.432 5.802 1.00 1.06 C ATOM 37 NE ARG 5 -5.536 -8.197 5.366 1.00 1.29 N ATOM 38 CZ ARG 5 -6.540 -8.869 5.893 1.00 1.45 C ATOM 39 NH1 ARG 5 -7.758 -8.766 5.402 1.00 1.66 N ATOM 40 NH2 ARG 5 -6.387 -9.640 6.964 1.00 1.62 N ATOM 41 C ARG 5 0.244 -6.583 4.068 1.00 0.73 C ATOM 42 O ARG 5 0.405 -5.455 4.539 1.00 0.78 O ATOM 43 N LYS 6 1.270 -7.517 3.924 1.00 0.73 N ATOM 44 CA LYS 6 2.660 -7.189 4.036 1.00 0.74 C ATOM 45 CB LYS 6 3.651 -8.427 3.982 1.00 0.81 C ATOM 46 CG LYS 6 3.371 -9.399 5.069 1.00 0.93 C ATOM 47 CD LYS 6 4.360 -10.554 5.159 1.00 1.18 C ATOM 48 CE LYS 6 3.976 -11.864 5.949 1.00 1.90 C ATOM 49 NZ LYS 6 3.338 -11.653 7.234 1.00 2.61 N ATOM 50 C LYS 6 3.227 -6.136 3.107 1.00 0.72 C ATOM 51 O LYS 6 3.870 -5.188 3.565 1.00 0.75 O ATOM 52 N LYS 7 2.873 -6.189 1.812 1.00 0.72 N ATOM 53 CA LYS 7 3.142 -5.102 0.818 1.00 0.72 C ATOM 54 CB LYS 7 2.703 -5.524 -0.574 1.00 0.78 C ATOM 55 CG LYS 7 3.609 -6.697 -1.245 1.00 0.90 C ATOM 56 CD LYS 7 5.102 -6.473 -1.337 1.00 1.00 C ATOM 57 CE LYS 7 5.485 -5.116 -1.972 1.00 1.22 C ATOM 58 NZ LYS 7 7.005 -4.968 -2.040 1.00 1.20 N ATOM 59 C LYS 7 2.397 -3.792 1.261 1.00 0.70 C ATOM 60 O LYS 7 2.970 -2.702 1.287 1.00 0.75 O ATOM 61 N CYS 8 1.118 -3.817 1.658 1.00 0.67 N ATOM 62 CA CYS 8 0.435 -2.691 2.200 1.00 0.71 C ATOM 63 CB CYS 8 -1.040 -3.253 2.513 1.00 0.76 C ATOM 64 SG CYS 8 -2.124 -2.292 3.582 1.00 1.37 S ATOM 65 C CYS 8 1.046 -2.040 3.483 1.00 0.67 C ATOM 66 O CYS 8 1.161 -0.823 3.529 1.00 0.67 O ATOM 67 N THR 9 1.585 -2.823 4.487 1.00 0.69 N ATOM 68 CA THR 9 2.434 -2.320 5.567 1.00 0.72 C ATOM 69 CB THR 9 2.879 -3.407 6.520 1.00 0.83 C ATOM 70 OG1 THR 9 1.799 -4.129 7.087 1.00 0.92 O ATOM 71 CG2 THR 9 3.639 -2.797 7.693 1.00 1.43 C ATOM 72 C THR 9 3.695 -1.629 5.101 1.00 0.69 C ATOM 73 O THR 9 4.117 -0.575 5.560 1.00 0.70 O ATOM 74 N GLU 10 4.360 -2.155 4.055 1.00 0.71 N ATOM 75 CA GLU 10 5.509 -1.552 3.392 1.00 0.72 C ATOM 76 CB GLU 10 6.277 -2.453 2.325 1.00 0.84 C ATOM 77 CG GLU 10 7.472 -1.737 1.580 1.00 1.24 C ATOM 78 CD GLU 10 8.214 -2.572 0.561 1.00 1.30 C ATOM 79 OE1 GLU 10 7.738 -3.694 0.125 1.00 1.98 O ATOM 80 OE2 GLU 10 9.341 -2.093 0.174 1.00 1.43 O ATOM 81 C GLU 10 5.141 -0.252 2.760 1.00 0.70 C ATOM 82 O GLU 10 5.712 0.795 3.035 1.00 0.74 O ATOM 83 N MET 11 4.112 -0.181 1.979 1.00 0.69 N ATOM 84 CA MET 11 3.786 1.071 1.322 1.00 0.68 C ATOM 85 CB MET 11 2.513 0.832 0.381 1.00 0.75 C ATOM 86 CG MET 11 2.873 0.008 -0.909 1.00 0.79 C ATOM 87 SD MET 11 4.051 0.866 -1.858 1.00 1.08 S ATOM 88 CE MET 11 5.535 -0.082 -1.435 1.00 1.05 C ATOM 89 C MET 11 3.407 2.144 2.326 1.00 0.65 C ATOM 90 O MET 11 3.949 3.225 2.142 1.00 0.68 O ATOM 91 N LYS 12 2.543 1.853 3.357 1.00 0.64 N ATOM 92 CA LYS 12 2.437 2.669 4.458 1.00 0.65 C ATOM 93 CB LYS 12 1.300 2.140 5.450 1.00 0.66 C ATOM 94 CG LYS 12 1.132 2.879 6.800 1.00 0.75 C ATOM 95 CD LYS 12 0.693 4.337 6.620 1.00 0.83 C ATOM 96 CE LYS 12 0.154 5.011 7.898 1.00 1.47 C ATOM 97 NZ LYS 12 1.216 5.203 8.917 1.00 2.06 N ATOM 98 C LYS 12 3.647 3.115 5.233 1.00 0.65 C ATOM 99 O LYS 12 3.865 4.302 5.530 1.00 0.74 O ATOM 100 N LYS 13 4.551 2.238 5.654 1.00 0.62 N ATOM 101 CA LYS 13 5.787 2.647 6.284 1.00 0.70 C ATOM 102 CB LYS 13 6.512 1.300 6.878 1.00 0.85 C ATOM 103 CG LYS 13 5.744 0.578 7.944 1.00 0.97 C ATOM 104 CD LYS 13 6.003 1.078 9.339 1.00 1.67 C ATOM 105 CE LYS 13 5.333 0.158 10.441 1.00 2.30 C ATOM 106 NZ LYS 13 6.008 0.264 11.760 1.00 2.96 N ATOM 107 C LYS 13 6.692 3.458 5.387 1.00 0.70 C ATOM 108 O LYS 13 7.351 4.443 5.832 1.00 0.75 O ATOM 109 N LYS 14 6.831 2.974 4.150 1.00 0.69 N ATOM 110 CA LYS 14 7.545 3.634 3.078 1.00 0.74 C ATOM 111 CB LYS 14 7.538 2.828 1.773 1.00 0.82 C ATOM 112 CG LYS 14 8.281 3.379 0.575 1.00 1.14 C ATOM 113 CD LYS 14 8.028 2.591 -0.702 1.00 1.37 C ATOM 114 CE LYS 14 9.042 3.059 -1.689 1.00 1.97 C ATOM 115 NZ LYS 14 8.980 2.125 -2.908 1.00 2.22 N ATOM 116 C LYS 14 7.180 5.066 2.787 1.00 0.73 C ATOM 117 O LYS 14 8.067 5.893 2.779 1.00 0.86 O ATOM 118 N PHE 15 5.877 5.408 2.730 1.00 0.64 N ATOM 119 CA PHE 15 5.473 6.808 2.449 1.00 0.64 C ATOM 120 CB PHE 15 4.233 6.752 1.544 1.00 0.61 C ATOM 121 CG PHE 15 4.607 6.329 0.144 1.00 0.53 C ATOM 122 CD1 PHE 15 4.370 4.989 -0.410 1.00 1.30 C ATOM 123 CE1 PHE 15 4.584 4.748 -1.768 1.00 1.35 C ATOM 124 CZ PHE 15 4.922 5.884 -2.541 1.00 0.74 C ATOM 125 CD2 PHE 15 4.980 7.387 -0.758 1.00 0.85 C ATOM 126 CE2 PHE 15 5.060 7.185 -2.139 1.00 0.96 C ATOM 127 C PHE 15 4.987 7.587 3.758 1.00 0.66 C ATOM 128 O PHE 15 4.816 8.789 3.777 1.00 0.78 O ATOM 129 N LYS 16 4.818 6.887 4.859 1.00 0.69 N ATOM 130 CA LYS 16 4.554 7.318 6.253 1.00 0.84 C ATOM 131 CB LYS 16 5.571 8.339 6.767 1.00 1.01 C ATOM 132 CG LYS 16 5.396 8.853 8.253 1.00 1.25 C ATOM 133 CD LYS 16 6.510 9.745 8.891 1.00 1.80 C ATOM 134 CE LYS 16 7.941 9.142 8.897 1.00 2.25 C ATOM 135 NZ LYS 16 8.803 10.028 9.668 1.00 2.97 N ATOM 136 C LYS 16 3.135 7.807 6.391 1.00 0.75 C ATOM 137 O LYS 16 2.372 7.106 6.986 1.00 0.91 O ATOM 138 N ASN 17 2.722 8.947 5.846 1.00 0.77 N ATOM 139 CA ASN 17 1.413 9.447 5.870 1.00 0.86 C ATOM 140 CB ASN 17 1.399 10.925 6.428 1.00 1.25 C ATOM 141 CG ASN 17 1.979 10.901 7.812 1.00 1.90 C ATOM 142 OD1 ASN 17 2.964 11.568 8.132 1.00 2.64 O ATOM 143 ND2 ASN 17 1.444 10.011 8.685 1.00 2.37 N ATOM 144 C ASN 17 0.814 9.525 4.442 1.00 0.75 C ATOM 145 O ASN 17 1.200 10.395 3.691 1.00 1.20 O ATOM 146 N CYS 18 -0.132 8.601 4.094 1.00 0.47 N ATOM 147 CA CYS 18 -0.614 8.276 2.788 1.00 0.61 C ATOM 148 CB CYS 18 0.470 7.509 1.876 1.00 0.73 C ATOM 149 SG CYS 18 0.780 5.768 2.341 1.00 0.87 S ATOM 150 C CYS 18 -1.875 7.502 3.096 1.00 0.72 C ATOM 151 O CYS 18 -2.103 7.040 4.251 1.00 0.83 O ATOM 152 N GLU 19 -2.767 7.298 2.120 1.00 0.74 N ATOM 153 CA GLU 19 -3.868 6.425 2.083 1.00 0.79 C ATOM 154 CB GLU 19 -5.211 7.281 1.866 1.00 0.91 C ATOM 155 CG GLU 19 -6.437 6.421 1.418 1.00 1.57 C ATOM 156 CD GLU 19 -7.729 7.143 1.499 1.00 2.11 C ATOM 157 OE1 GLU 19 -8.811 6.545 1.420 1.00 2.59 O ATOM 158 OE2 GLU 19 -7.824 8.365 1.747 1.00 2.54 O ATOM 159 C GLU 19 -3.645 5.256 1.165 1.00 0.73 C ATOM 160 O GLU 19 -3.368 5.465 -0.027 1.00 0.79 O ATOM 161 N VAL 20 -3.772 3.969 1.683 1.00 0.81 N ATOM 162 CA VAL 20 -3.603 2.725 0.991 1.00 0.76 C ATOM 163 CB VAL 20 -2.759 1.757 1.775 1.00 0.82 C ATOM 164 CG1 VAL 20 -1.301 2.295 1.994 1.00 1.34 C ATOM 165 CG2 VAL 20 -3.306 1.433 3.171 1.00 1.54 C ATOM 166 C VAL 20 -4.974 2.195 0.568 1.00 0.77 C ATOM 167 O VAL 20 -5.786 1.954 1.427 1.00 0.96 O ATOM 168 N ARG 21 -5.264 2.048 -0.722 1.00 0.68 N ATOM 169 CA ARG 21 -6.472 1.241 -1.034 1.00 0.68 C ATOM 170 CB ARG 21 -7.371 2.088 -1.986 1.00 0.79 C ATOM 171 CG ARG 21 -7.658 3.512 -1.476 1.00 1.11 C ATOM 172 CD ARG 21 -8.409 4.376 -2.390 1.00 1.43 C ATOM 173 NE ARG 21 -8.666 5.598 -1.565 1.00 1.16 N ATOM 174 CZ ARG 21 -9.311 6.652 -1.996 1.00 1.49 C ATOM 175 NH1 ARG 21 -9.430 7.653 -1.176 1.00 1.26 N ATOM 176 NH2 ARG 21 -9.681 6.876 -3.262 1.00 2.35 N ATOM 177 C ARG 21 -6.144 -0.092 -1.682 1.00 0.61 C ATOM 178 O ARG 21 -5.304 -0.167 -2.590 1.00 0.63 O ATOM 179 N CYS 22 -6.737 -1.199 -1.090 1.00 0.61 N ATOM 180 CA CYS 22 -6.431 -2.563 -1.429 1.00 0.63 C ATOM 181 CB CYS 22 -5.608 -3.199 -0.258 1.00 0.72 C ATOM 182 SG CYS 22 -4.002 -2.476 0.156 1.00 1.18 S ATOM 183 C CYS 22 -7.706 -3.425 -1.521 1.00 0.73 C ATOM 184 O CYS 22 -8.656 -3.410 -0.733 1.00 0.90 O ATOM 185 N ASP 23 -7.750 -4.311 -2.510 1.00 0.76 N ATOM 186 CA ASP 23 -8.883 -5.217 -2.690 1.00 0.90 C ATOM 187 CB ASP 23 -9.325 -5.280 -4.148 1.00 1.07 C ATOM 188 CG ASP 23 -9.489 -3.875 -4.660 1.00 1.45 C ATOM 189 OD1 ASP 23 -10.150 -3.049 -3.944 1.00 2.05 O ATOM 190 OD2 ASP 23 -8.920 -3.565 -5.705 1.00 1.88 O ATOM 191 C ASP 23 -8.530 -6.569 -2.007 1.00 1.03 C ATOM 192 O ASP 23 -9.399 -7.427 -1.733 1.00 1.61 O ATOM 193 N GLU 24 -7.228 -6.770 -1.696 1.00 1.05 N ATOM 194 CA GLU 24 -6.588 -7.735 -0.810 1.00 1.28 C ATOM 195 CB GLU 24 -7.032 -7.813 0.625 1.00 1.34 C ATOM 196 CG GLU 24 -7.334 -6.420 1.343 1.00 1.49 C ATOM 197 CD GLU 24 -7.185 -6.458 2.877 1.00 1.63 C ATOM 198 OE1 GLU 24 -6.013 -6.345 3.364 1.00 1.81 O ATOM 199 OE2 GLU 24 -8.163 -6.705 3.628 1.00 2.14 O ATOM 200 C GLU 24 -6.189 -9.015 -1.554 1.00 1.44 C ATOM 201 O GLU 24 -6.571 -10.087 -1.096 1.00 1.50 O ATOM 202 N SER 25 -5.439 -8.876 -2.688 1.00 1.83 N ATOM 203 CA SER 25 -4.965 -10.009 -3.481 1.00 2.25 C ATOM 204 CB SER 25 -6.151 -10.643 -4.309 1.00 2.31 C ATOM 205 OG SER 25 -5.931 -11.810 -5.112 1.00 2.64 O ATOM 206 C SER 25 -4.048 -9.499 -4.591 1.00 2.49 C ATOM 207 O SER 25 -4.238 -8.454 -5.197 1.00 2.91 O ATOM 208 N ASN 26 -3.094 -10.297 -4.915 1.00 2.52 N ATOM 209 CA ASN 26 -2.152 -10.235 -5.954 1.00 2.69 C ATOM 210 CB ASN 26 -2.743 -10.174 -7.433 1.00 2.65 C ATOM 211 CG ASN 26 -3.924 -11.167 -7.719 1.00 2.89 C ATOM 212 OD1 ASN 26 -4.155 -12.208 -7.139 1.00 3.08 O ATOM 213 ND2 ASN 26 -4.680 -10.761 -8.758 1.00 3.38 N ATOM 214 C ASN 26 -1.103 -9.156 -5.761 1.00 2.51 C ATOM 215 O ASN 26 -0.570 -8.650 -6.751 1.00 2.57 O ATOM 216 N HIS 27 -0.853 -8.706 -4.511 1.00 2.38 N ATOM 217 CA HIS 27 0.282 -7.820 -4.186 1.00 2.36 C ATOM 218 CB HIS 27 1.702 -8.238 -4.684 1.00 2.70 C ATOM 219 ND1 HIS 27 1.852 -10.273 -3.155 1.00 3.31 N ATOM 220 CG HIS 27 1.908 -9.727 -4.425 1.00 3.12 C ATOM 221 CE1 HIS 27 2.039 -11.546 -3.344 1.00 3.72 C ATOM 222 NE2 HIS 27 2.159 -11.898 -4.661 1.00 3.98 N ATOM 223 CD2 HIS 27 2.093 -10.707 -5.338 1.00 3.76 C ATOM 224 C HIS 27 0.052 -6.420 -4.707 1.00 2.02 C ATOM 225 O HIS 27 0.953 -5.585 -4.805 1.00 2.24 O ATOM 226 N CYS 28 -1.211 -6.116 -5.100 1.00 1.57 N ATOM 227 CA CYS 28 -1.610 -4.823 -5.574 1.00 1.28 C ATOM 228 CB CYS 28 -2.759 -5.053 -6.647 1.00 1.28 C ATOM 229 SG CYS 28 -2.219 -6.041 -8.005 1.00 1.72 S ATOM 230 C CYS 28 -2.017 -3.843 -4.463 1.00 1.05 C ATOM 231 O CYS 28 -2.858 -4.212 -3.660 1.00 1.02 O ATOM 232 N VAL 29 -1.441 -2.655 -4.497 1.00 0.95 N ATOM 233 CA VAL 29 -1.709 -1.521 -3.597 1.00 0.82 C ATOM 234 CB VAL 29 -0.652 -1.166 -2.591 1.00 0.99 C ATOM 235 CG1 VAL 29 -1.073 -0.072 -1.624 1.00 0.99 C ATOM 236 CG2 VAL 29 -0.256 -2.431 -1.700 1.00 1.14 C ATOM 237 C VAL 29 -1.858 -0.429 -4.603 1.00 0.80 C ATOM 238 O VAL 29 -0.997 -0.307 -5.504 1.00 0.92 O ATOM 239 N GLU 30 -2.810 0.474 -4.303 1.00 0.75 N ATOM 240 CA GLU 30 -2.907 1.777 -4.963 1.00 0.72 C ATOM 241 CB GLU 30 -4.237 2.147 -5.673 1.00 0.76 C ATOM 242 CG GLU 30 -4.218 3.587 -6.178 1.00 1.28 C ATOM 243 CD GLU 30 -5.341 3.871 -7.134 1.00 1.19 C ATOM 244 OE1 GLU 30 -5.363 5.052 -7.594 1.00 1.71 O ATOM 245 OE2 GLU 30 -6.201 3.020 -7.504 1.00 1.52 O ATOM 246 C GLU 30 -2.651 2.946 -3.922 1.00 0.68 C ATOM 247 O GLU 30 -3.251 2.945 -2.812 1.00 0.67 O ATOM 248 N VAL 31 -1.657 3.885 -4.160 1.00 0.71 N ATOM 249 CA VAL 31 -1.089 4.759 -3.134 1.00 0.68 C ATOM 250 CB VAL 31 0.438 4.945 -3.063 1.00 0.83 C ATOM 251 CG1 VAL 31 0.865 6.032 -2.081 1.00 0.90 C ATOM 252 CG2 VAL 31 1.135 3.626 -2.661 1.00 1.00 C ATOM 253 C VAL 31 -1.714 6.092 -3.464 1.00 0.57 C ATOM 254 O VAL 31 -1.339 6.757 -4.462 1.00 0.61 O ATOM 255 N ARG 32 -2.598 6.580 -2.563 1.00 0.57 N ATOM 256 CA ARG 32 -3.101 7.862 -2.499 1.00 0.55 C ATOM 257 CB ARG 32 -4.608 7.795 -2.065 1.00 0.66 C ATOM 258 CG ARG 32 -5.443 6.688 -2.734 1.00 0.73 C ATOM 259 CD ARG 32 -5.504 6.831 -4.243 1.00 0.68 C ATOM 260 NE ARG 32 -6.528 7.859 -4.525 1.00 0.99 N ATOM 261 CZ ARG 32 -7.258 7.960 -5.636 1.00 1.26 C ATOM 262 NH1 ARG 32 -8.172 8.889 -5.554 1.00 1.86 N ATOM 263 NH2 ARG 32 -7.170 7.235 -6.713 1.00 1.63 N ATOM 264 C ARG 32 -2.208 8.830 -1.590 1.00 0.60 C ATOM 265 O ARG 32 -2.119 8.758 -0.359 1.00 0.71 O ATOM 266 N CYS 33 -1.382 9.668 -2.273 1.00 0.66 N ATOM 267 CA CYS 33 -0.534 10.659 -1.523 1.00 0.79 C ATOM 268 CB CYS 33 0.947 10.233 -1.744 1.00 0.94 C ATOM 269 SG CYS 33 2.056 10.981 -0.465 1.00 1.65 S ATOM 270 C CYS 33 -0.798 11.945 -2.231 1.00 0.72 C ATOM 271 O CYS 33 -1.286 11.984 -3.358 1.00 0.68 O ATOM 272 N SER 34 -0.291 13.015 -1.586 1.00 0.89 N ATOM 273 CA SER 34 -0.277 14.359 -2.154 1.00 1.00 C ATOM 274 CB SER 34 -0.084 15.553 -1.204 1.00 1.35 C ATOM 275 OG SER 34 0.925 15.198 -0.257 1.00 2.03 O ATOM 276 C SER 34 0.540 14.536 -3.469 1.00 0.96 C ATOM 277 O SER 34 1.614 13.980 -3.598 1.00 1.32 O ATOM 278 N ASP 35 0.043 15.279 -4.462 1.00 1.32 N ATOM 279 CA ASP 35 0.687 15.757 -5.686 1.00 1.42 C ATOM 280 CB ASP 35 1.969 16.601 -5.484 1.00 1.69 C ATOM 281 CG ASP 35 1.783 17.816 -4.693 1.00 2.36 C ATOM 282 OD1 ASP 35 2.521 18.119 -3.697 1.00 2.50 O ATOM 283 OD2 ASP 35 0.790 18.522 -5.046 1.00 3.06 O ATOM 284 C ASP 35 1.028 14.772 -6.807 1.00 1.41 C ATOM 285 O ASP 35 1.016 15.198 -7.988 1.00 2.05 O ATOM 286 N THR 36 1.274 13.447 -6.468 1.00 1.12 N ATOM 287 CA THR 36 1.380 12.303 -7.417 1.00 1.13 C ATOM 288 CB THR 36 2.737 12.268 -8.125 1.00 1.51 C ATOM 289 OG1 THR 36 2.812 11.228 -9.158 1.00 1.83 O ATOM 290 CG2 THR 36 3.888 12.066 -7.217 1.00 2.00 C ATOM 291 C THR 36 0.984 10.991 -6.792 1.00 0.99 C ATOM 292 O THR 36 1.388 10.685 -5.626 1.00 1.30 O ATOM 293 N LYS 37 0.255 10.122 -7.508 1.00 1.06 N ATOM 294 CA LYS 37 -0.154 8.839 -7.026 1.00 1.10 C ATOM 295 CB LYS 37 -1.684 8.537 -7.303 1.00 1.51 C ATOM 296 CG LYS 37 -2.631 9.658 -6.663 1.00 2.07 C ATOM 297 CD LYS 37 -4.070 9.497 -7.026 1.00 2.44 C ATOM 298 CE LYS 37 -5.100 10.535 -6.580 1.00 2.90 C ATOM 299 NZ LYS 37 -4.816 11.942 -6.949 1.00 2.93 N ATOM 300 C LYS 37 0.647 7.772 -7.602 1.00 1.03 C ATOM 301 O LYS 37 1.264 7.901 -8.690 1.00 1.45 O ATOM 302 N TYR 38 0.757 6.660 -6.818 1.00 0.96 N ATOM 303 CA TYR 38 1.497 5.500 -7.331 1.00 0.91 C ATOM 304 CB TYR 38 2.708 5.192 -6.374 1.00 0.97 C ATOM 305 CG TYR 38 3.426 3.898 -6.778 1.00 0.92 C ATOM 306 CD1 TYR 38 4.277 3.870 -7.894 1.00 1.14 C ATOM 307 CE1 TYR 38 5.031 2.739 -8.168 1.00 1.21 C ATOM 308 CZ TYR 38 5.077 1.625 -7.314 1.00 1.06 C ATOM 309 OH TYR 38 5.996 0.527 -7.418 1.00 1.26 O ATOM 310 CD2 TYR 38 3.350 2.734 -5.978 1.00 0.88 C ATOM 311 CE2 TYR 38 4.205 1.615 -6.213 1.00 0.92 C ATOM 312 C TYR 38 0.490 4.379 -7.356 1.00 0.95 C ATOM 313 O TYR 38 -0.496 4.478 -6.640 1.00 1.03 O ATOM 314 N THR 39 0.684 3.299 -8.240 1.00 1.04 N ATOM 315 CA THR 39 -0.219 2.151 -8.108 1.00 1.22 C ATOM 316 CB THR 39 -1.507 2.351 -8.897 1.00 1.75 C ATOM 317 OG1 THR 39 -2.425 1.340 -8.688 1.00 2.53 O ATOM 318 CG2 THR 39 -1.337 2.465 -10.423 1.00 1.30 C ATOM 319 C THR 39 0.486 0.944 -8.784 1.00 1.06 C ATOM 320 O THR 39 1.300 1.056 -9.653 1.00 1.11 O ATOM 321 N LEU 40 0.139 -0.201 -8.261 1.00 1.01 N ATOM 322 CA LEU 40 0.557 -1.515 -8.696 1.00 1.04 C ATOM 323 CB LEU 40 1.139 -2.246 -7.424 1.00 1.03 C ATOM 324 CG LEU 40 2.357 -1.552 -6.852 1.00 0.83 C ATOM 325 CD1 LEU 40 2.620 -2.139 -5.369 1.00 1.15 C ATOM 326 CD2 LEU 40 3.547 -1.717 -7.735 1.00 1.57 C ATOM 327 C LEU 40 -0.701 -2.286 -9.060 1.00 1.11 C ATOM 328 O LEU 40 -0.649 -3.458 -9.392 1.00 1.02 O ATOM 329 N CYS 41 -1.833 -1.615 -9.104 1.00 1.82 N ATOM 330 CA CYS 41 -3.083 -2.297 -9.664 1.00 2.12 C ATOM 331 CB CYS 41 -4.213 -1.534 -9.039 1.00 3.05 C ATOM 332 SG CYS 41 -4.123 -1.587 -7.241 1.00 3.51 S ATOM 333 C CYS 41 -3.241 -2.195 -11.217 1.00 2.48 C ATOM 334 OXT CYS 41 -3.522 -3.368 -11.835 1.00 2.39 ATOM 335 O CYS 41 -3.061 -1.179 -11.850 1.00 3.30 O TER 335 O CYS 41 END