####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 41 ( 335), selected 41 , name T0955TS110_1 # Molecule2: number of CA atoms 41 ( 665), selected 41 , name T0955.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS110_1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 24 1 - 24 4.70 11.47 LCS_AVERAGE: 50.92 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 12 2 - 13 1.71 13.29 LONGEST_CONTINUOUS_SEGMENT: 12 4 - 15 1.87 12.82 LONGEST_CONTINUOUS_SEGMENT: 12 5 - 16 1.96 12.90 LCS_AVERAGE: 22.37 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 8 2 - 9 0.88 14.31 LCS_AVERAGE: 12.91 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 41 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 1 S 1 5 10 24 3 5 5 9 9 9 9 13 16 19 22 24 26 27 29 31 33 33 34 36 LCS_GDT Q 2 Q 2 8 12 24 4 7 8 9 11 12 12 13 17 19 22 24 26 27 29 31 33 33 34 36 LCS_GDT E 3 E 3 8 12 24 4 7 8 9 11 12 12 14 17 19 22 24 26 27 29 31 33 33 34 36 LCS_GDT T 4 T 4 8 12 24 4 7 8 10 11 13 13 15 17 19 22 24 26 27 29 31 33 33 34 36 LCS_GDT R 5 R 5 8 12 24 4 7 8 10 11 13 13 15 17 19 22 24 26 27 29 31 33 33 34 36 LCS_GDT K 6 K 6 8 12 24 4 7 8 10 11 13 13 15 17 19 22 24 26 27 29 31 33 33 34 36 LCS_GDT K 7 K 7 8 12 24 4 7 8 10 11 13 13 15 17 19 22 24 26 27 29 31 33 33 34 36 LCS_GDT C 8 C 8 8 12 24 4 7 8 10 11 13 13 15 17 19 22 24 26 27 29 31 33 33 34 36 LCS_GDT T 9 T 9 8 12 24 4 7 8 10 11 13 13 15 17 19 22 24 26 27 29 31 33 33 34 36 LCS_GDT E 10 E 10 7 12 24 4 6 8 10 11 13 13 15 17 19 20 23 26 27 29 31 33 33 34 36 LCS_GDT M 11 M 11 7 12 24 4 6 8 10 11 13 13 15 17 19 21 24 26 27 29 31 33 33 34 36 LCS_GDT K 12 K 12 7 12 24 4 6 8 10 11 13 13 15 17 19 22 24 26 27 29 31 33 33 34 36 LCS_GDT K 13 K 13 7 12 24 4 6 8 10 11 13 13 15 17 19 20 21 22 24 29 31 33 33 34 36 LCS_GDT K 14 K 14 7 12 24 4 4 8 9 10 13 13 15 17 19 20 21 21 22 24 27 29 32 34 36 LCS_GDT F 15 F 15 5 12 24 4 4 8 9 10 13 13 15 17 19 20 22 25 27 29 31 33 33 34 36 LCS_GDT K 16 K 16 5 12 24 3 3 6 9 10 13 13 15 17 19 21 24 26 27 29 31 33 33 34 36 LCS_GDT N 17 N 17 3 5 24 3 3 4 5 5 7 12 15 17 19 21 24 26 27 29 31 33 33 34 36 LCS_GDT C 18 C 18 3 6 24 3 3 4 6 7 8 10 15 17 19 22 24 26 27 29 31 33 33 34 36 LCS_GDT E 19 E 19 3 6 24 3 3 4 6 7 7 10 12 16 19 20 23 25 26 29 30 31 33 34 35 LCS_GDT V 20 V 20 4 7 24 3 3 5 6 7 10 11 13 16 19 22 24 26 27 29 31 33 33 34 36 LCS_GDT R 21 R 21 4 7 24 3 3 5 6 8 10 11 13 16 19 22 24 26 27 29 31 33 33 34 36 LCS_GDT C 22 C 22 4 7 24 3 3 5 6 7 10 11 13 16 19 22 24 26 27 29 31 33 33 34 36 LCS_GDT D 23 D 23 4 7 24 0 3 5 6 8 10 11 13 16 19 22 24 26 27 29 31 33 33 34 36 LCS_GDT E 24 E 24 5 7 24 4 5 6 6 8 10 11 13 16 19 22 24 26 27 29 31 33 33 34 36 LCS_GDT S 25 S 25 5 7 17 4 5 6 6 8 10 11 13 16 19 22 24 25 27 29 31 33 33 34 36 LCS_GDT N 26 N 26 5 7 17 4 5 6 8 8 10 11 13 16 19 22 24 26 27 29 31 33 33 34 36 LCS_GDT H 27 H 27 5 7 17 4 5 6 8 8 10 11 13 16 19 22 24 26 27 29 31 33 33 34 36 LCS_GDT C 28 C 28 5 7 17 3 5 6 6 8 9 11 13 16 19 22 24 26 27 29 31 33 33 34 36 LCS_GDT V 29 V 29 4 6 17 4 4 5 6 7 10 12 13 16 19 22 24 26 27 29 31 33 33 34 36 LCS_GDT E 30 E 30 4 9 17 4 4 4 5 9 10 12 13 16 19 22 24 26 27 29 31 33 33 34 36 LCS_GDT V 31 V 31 4 9 17 4 4 5 8 9 10 12 13 15 19 19 24 26 27 29 31 33 33 34 36 LCS_GDT R 32 R 32 4 9 17 4 4 5 8 8 10 12 13 16 19 19 21 24 26 28 31 33 33 34 36 LCS_GDT C 33 C 33 3 9 16 3 3 5 8 9 10 12 13 13 15 17 18 19 21 24 27 29 31 33 34 LCS_GDT S 34 S 34 3 9 16 3 3 5 8 9 10 12 13 13 15 17 18 19 21 24 27 29 30 33 33 LCS_GDT D 35 D 35 3 9 16 3 3 4 8 9 10 12 13 13 15 17 18 21 24 24 27 29 31 33 33 LCS_GDT T 36 T 36 3 9 16 3 3 5 8 9 10 12 13 13 15 17 18 21 24 24 27 29 31 33 34 LCS_GDT K 37 K 37 5 9 16 3 4 5 8 9 10 12 13 14 19 19 20 22 24 27 29 32 33 34 36 LCS_GDT Y 38 Y 38 5 9 16 3 4 6 8 9 10 12 13 16 19 19 21 24 26 28 31 32 33 34 36 LCS_GDT T 39 T 39 5 9 16 3 4 6 8 9 10 12 13 16 19 19 22 25 27 29 31 33 33 34 36 LCS_GDT L 40 L 40 5 5 16 3 4 6 8 8 10 12 13 16 19 19 22 25 27 29 31 33 33 34 36 LCS_GDT C 41 C 41 5 5 16 3 4 6 8 8 9 10 13 16 19 19 22 25 27 29 31 33 33 34 36 LCS_AVERAGE LCS_A: 28.73 ( 12.91 22.37 50.92 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 4 7 8 10 11 13 13 15 17 19 22 24 26 27 29 31 33 33 34 36 GDT PERCENT_AT 9.76 17.07 19.51 24.39 26.83 31.71 31.71 36.59 41.46 46.34 53.66 58.54 63.41 65.85 70.73 75.61 80.49 80.49 82.93 87.80 GDT RMS_LOCAL 0.07 0.85 0.88 1.31 1.56 2.00 2.00 2.96 3.20 3.74 4.09 4.43 4.77 4.82 5.17 5.55 5.81 5.78 5.96 6.38 GDT RMS_ALL_AT 13.19 14.33 14.31 13.18 13.25 12.80 12.80 13.10 12.82 12.16 10.65 10.11 9.79 9.75 9.80 8.81 8.68 9.03 8.77 8.13 # Checking swapping # possible swapping detected: E 10 E 10 # possible swapping detected: D 23 D 23 # possible swapping detected: Y 38 Y 38 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA S 1 S 1 10.372 0 0.506 0.848 10.938 0.000 0.000 10.608 LGA Q 2 Q 2 5.584 0 0.437 0.900 7.787 0.455 8.283 3.441 LGA E 3 E 3 5.083 0 0.079 0.488 6.195 4.091 1.818 5.693 LGA T 4 T 4 2.861 0 0.811 0.867 4.872 23.636 20.260 3.454 LGA R 5 R 5 1.941 0 0.398 1.160 3.557 38.636 32.397 3.557 LGA K 6 K 6 2.910 0 0.161 1.438 7.645 27.273 16.162 7.627 LGA K 7 K 7 1.885 0 0.154 0.650 2.694 51.364 47.071 2.375 LGA C 8 C 8 1.286 0 0.083 0.124 2.000 55.000 56.061 1.730 LGA T 9 T 9 2.799 0 0.165 0.154 4.686 38.636 24.675 4.010 LGA E 10 E 10 1.697 0 0.127 1.301 7.329 70.909 38.788 7.329 LGA M 11 M 11 0.831 0 0.160 1.506 4.132 70.000 53.182 4.132 LGA K 12 K 12 2.675 0 0.848 1.004 10.093 31.818 14.949 10.093 LGA K 13 K 13 2.837 0 0.242 0.633 8.333 39.091 17.980 8.333 LGA K 14 K 14 2.851 0 0.167 1.299 5.287 27.727 15.556 4.635 LGA F 15 F 15 3.353 0 0.316 1.507 4.465 20.000 28.926 2.639 LGA K 16 K 16 3.332 0 0.224 0.933 7.132 16.364 10.101 7.132 LGA N 17 N 17 3.925 0 0.582 0.589 8.418 8.636 4.318 7.168 LGA C 18 C 18 5.752 0 0.523 0.476 7.617 1.364 0.909 7.617 LGA E 19 E 19 7.189 0 0.166 1.160 9.672 0.000 0.000 8.627 LGA V 20 V 20 9.308 0 0.578 1.002 10.059 0.000 0.000 9.159 LGA R 21 R 21 10.252 0 0.208 1.527 19.978 0.000 0.000 19.084 LGA C 22 C 22 9.466 0 0.224 0.217 12.054 0.000 0.303 4.851 LGA D 23 D 23 15.300 0 0.126 0.737 20.243 0.000 0.000 20.243 LGA E 24 E 24 14.642 0 0.682 1.176 19.718 0.000 0.000 19.718 LGA S 25 S 25 22.098 0 0.216 0.648 25.198 0.000 0.000 25.198 LGA N 26 N 26 23.228 0 0.592 1.240 25.513 0.000 0.000 24.233 LGA H 27 H 27 17.200 0 0.640 1.488 21.583 0.000 0.000 21.583 LGA C 28 C 28 17.911 0 0.612 0.538 19.715 0.000 0.000 19.715 LGA V 29 V 29 18.108 0 0.609 0.978 19.897 0.000 0.000 17.714 LGA E 30 E 30 18.480 0 0.242 1.074 26.335 0.000 0.000 26.335 LGA V 31 V 31 13.713 0 0.343 0.981 16.932 0.000 0.000 10.842 LGA R 32 R 32 17.145 0 0.243 1.152 27.477 0.000 0.000 25.440 LGA C 33 C 33 16.902 0 0.496 0.999 18.453 0.000 0.000 15.494 LGA S 34 S 34 22.382 0 0.518 0.697 23.738 0.000 0.000 23.738 LGA D 35 D 35 22.306 0 0.345 1.094 23.268 0.000 0.000 21.552 LGA T 36 T 36 16.005 0 0.550 0.943 18.239 0.000 0.000 15.958 LGA K 37 K 37 16.510 0 0.754 1.202 24.148 0.000 0.000 24.148 LGA Y 38 Y 38 16.108 0 0.058 1.387 16.181 0.000 0.000 10.477 LGA T 39 T 39 18.495 0 0.137 0.116 21.881 0.000 0.000 21.881 LGA L 40 L 40 16.821 0 0.203 0.984 18.049 0.000 0.000 11.362 LGA C 41 C 41 21.498 0 0.425 1.213 25.646 0.000 0.000 25.646 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 41 164 164 100.00 335 335 100.00 41 41 SUMMARY(RMSD_GDC): 7.712 7.571 8.485 12.805 9.555 4.346 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 41 41 4.0 15 2.96 38.415 34.443 0.491 LGA_LOCAL RMSD: 2.958 Number of atoms: 15 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 13.097 Number of assigned atoms: 41 Std_ASGN_ATOMS RMSD: 7.712 Standard rmsd on all 41 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.015356 * X + -0.738399 * Y + 0.674189 * Z + 4.696631 Y_new = 0.562094 * X + 0.564014 * Y + 0.604928 * Z + -0.995132 Z_new = -0.826931 * X + 0.369668 * Y + 0.423711 * Z + 5.961233 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 1.543483 0.973627 0.717386 [DEG: 88.4351 55.7847 41.1032 ] ZXZ: 2.302100 1.133258 -1.150410 [DEG: 131.9006 64.9309 -65.9136 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0955TS110_1 REMARK 2: T0955.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS110_1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 41 41 4.0 15 2.96 34.443 7.71 REMARK ---------------------------------------------------------- MOLECULE T0955TS110_1 PFRMAT TS TARGET T0955 MODEL 1 PARENT N/A ATOM 1 N SER 1 5.432 -10.856 7.556 1.00 0.00 N ATOM 2 CA SER 1 6.053 -10.404 6.136 1.00 0.00 C ATOM 3 C SER 1 5.120 -10.005 5.011 1.00 0.00 C ATOM 4 O SER 1 5.385 -10.315 3.848 1.00 0.00 O ATOM 8 CB SER 1 6.938 -11.513 5.561 1.00 0.00 C ATOM 10 OG SER 1 6.171 -12.659 5.237 1.00 0.00 O ATOM 11 N GLN 2 4.041 -9.306 5.342 1.00 0.00 N ATOM 12 CA GLN 2 2.919 -9.049 4.522 1.00 0.00 C ATOM 13 C GLN 2 3.447 -7.776 3.861 1.00 0.00 C ATOM 14 O GLN 2 3.109 -6.664 4.263 1.00 0.00 O ATOM 16 CB GLN 2 1.652 -8.918 5.371 1.00 0.00 C ATOM 17 CD GLN 2 0.002 -10.026 6.929 1.00 0.00 C ATOM 18 CG GLN 2 1.252 -10.197 6.089 1.00 0.00 C ATOM 19 OE1 GLN 2 -1.075 -9.737 6.406 1.00 0.00 O ATOM 22 NE2 GLN 2 0.140 -10.204 8.238 1.00 0.00 N ATOM 23 N GLU 3 4.273 -7.952 2.834 1.00 0.00 N ATOM 24 CA GLU 3 5.145 -6.855 2.200 1.00 0.00 C ATOM 25 C GLU 3 4.062 -6.055 1.490 1.00 0.00 C ATOM 26 O GLU 3 4.203 -4.832 1.357 1.00 0.00 O ATOM 28 CB GLU 3 6.219 -7.476 1.304 1.00 0.00 C ATOM 29 CD GLU 3 5.280 -9.644 0.412 1.00 0.00 C ATOM 30 CG GLU 3 5.667 -8.214 0.094 1.00 0.00 C ATOM 31 OE1 GLU 3 4.692 -9.875 1.490 1.00 0.00 O ATOM 32 OE2 GLU 3 5.562 -10.534 -0.417 1.00 0.00 O ATOM 33 N THR 4 2.956 -6.642 1.085 1.00 0.00 N ATOM 34 CA THR 4 1.803 -5.955 0.552 1.00 0.00 C ATOM 35 C THR 4 1.453 -6.167 2.017 1.00 0.00 C ATOM 36 O THR 4 1.919 -7.112 2.636 1.00 0.00 O ATOM 38 CB THR 4 1.176 -6.729 -0.622 1.00 0.00 C ATOM 40 OG1 THR 4 0.734 -8.015 -0.168 1.00 0.00 O ATOM 41 CG2 THR 4 2.196 -6.930 -1.733 1.00 0.00 C ATOM 42 N ARG 5 0.628 -5.284 2.565 1.00 0.00 N ATOM 43 CA ARG 5 -0.263 -5.569 3.625 1.00 0.00 C ATOM 44 C ARG 5 0.895 -4.699 4.122 1.00 0.00 C ATOM 45 O ARG 5 0.664 -3.640 4.710 1.00 0.00 O ATOM 47 CB ARG 5 -0.409 -7.081 3.811 1.00 0.00 C ATOM 48 CD ARG 5 -1.226 -9.278 2.913 1.00 0.00 C ATOM 50 NE ARG 5 -2.098 -9.571 4.048 1.00 0.00 N ATOM 51 CG ARG 5 -1.107 -7.784 2.659 1.00 0.00 C ATOM 52 CZ ARG 5 -3.421 -9.671 3.968 1.00 0.00 C ATOM 55 NH1 ARG 5 -4.132 -9.941 5.054 1.00 0.00 N ATOM 58 NH2 ARG 5 -4.030 -9.499 2.804 1.00 0.00 N ATOM 59 N LYS 6 2.130 -5.128 3.862 1.00 0.00 N ATOM 60 CA LYS 6 3.211 -4.573 4.687 1.00 0.00 C ATOM 61 C LYS 6 3.710 -3.588 3.635 1.00 0.00 C ATOM 62 O LYS 6 4.411 -2.627 3.953 1.00 0.00 O ATOM 64 CB LYS 6 4.165 -5.681 5.137 1.00 0.00 C ATOM 65 CD LYS 6 3.087 -6.178 7.348 1.00 0.00 C ATOM 66 CE LYS 6 2.506 -7.259 8.245 1.00 0.00 C ATOM 67 CG LYS 6 3.514 -6.746 6.004 1.00 0.00 C ATOM 71 NZ LYS 6 3.515 -8.298 8.589 1.00 0.00 N ATOM 72 N LYS 7 3.336 -3.822 2.381 1.00 0.00 N ATOM 73 CA LYS 7 3.953 -3.004 1.299 1.00 0.00 C ATOM 74 C LYS 7 2.743 -2.085 1.168 1.00 0.00 C ATOM 75 O LYS 7 2.853 -0.876 1.016 1.00 0.00 O ATOM 77 CB LYS 7 4.335 -3.888 0.110 1.00 0.00 C ATOM 78 CD LYS 7 5.466 -4.095 -2.120 1.00 0.00 C ATOM 79 CE LYS 7 6.152 -3.350 -3.254 1.00 0.00 C ATOM 80 CG LYS 7 5.023 -3.143 -1.022 1.00 0.00 C ATOM 84 NZ LYS 7 6.588 -4.270 -4.341 1.00 0.00 N ATOM 85 N CYS 8 1.549 -2.665 1.210 1.00 0.00 N ATOM 86 CA CYS 8 0.365 -1.834 1.164 1.00 0.00 C ATOM 87 C CYS 8 0.545 -0.857 2.331 1.00 0.00 C ATOM 88 O CYS 8 0.581 0.356 2.120 1.00 0.00 O ATOM 90 CB CYS 8 -0.897 -2.694 1.271 1.00 0.00 C ATOM 91 SG CYS 8 -2.445 -1.764 1.174 1.00 0.00 S ATOM 92 N THR 9 0.684 -1.386 3.547 1.00 0.00 N ATOM 93 CA THR 9 0.364 -0.501 4.669 1.00 0.00 C ATOM 94 C THR 9 1.841 -0.174 4.861 1.00 0.00 C ATOM 95 O THR 9 2.230 0.951 5.144 1.00 0.00 O ATOM 97 CB THR 9 -0.397 -1.249 5.779 1.00 0.00 C ATOM 99 OG1 THR 9 -1.630 -1.760 5.256 1.00 0.00 O ATOM 100 CG2 THR 9 -0.711 -0.312 6.935 1.00 0.00 C ATOM 101 N GLU 10 2.695 -1.181 4.720 1.00 0.00 N ATOM 102 CA GLU 10 4.161 -0.985 4.955 1.00 0.00 C ATOM 103 C GLU 10 4.710 -0.087 3.851 1.00 0.00 C ATOM 104 O GLU 10 5.783 0.500 3.989 1.00 0.00 O ATOM 106 CB GLU 10 4.884 -2.333 4.992 1.00 0.00 C ATOM 107 CD GLU 10 6.645 -1.699 6.688 1.00 0.00 C ATOM 108 CG GLU 10 6.369 -2.233 5.296 1.00 0.00 C ATOM 109 OE1 GLU 10 5.674 -1.373 7.402 1.00 0.00 O ATOM 110 OE2 GLU 10 7.832 -1.606 7.065 1.00 0.00 O ATOM 111 N MET 11 3.963 0.028 2.758 1.00 0.00 N ATOM 112 CA MET 11 4.636 0.661 1.536 1.00 0.00 C ATOM 113 C MET 11 3.774 1.915 1.643 1.00 0.00 C ATOM 114 O MET 11 4.038 2.920 0.985 1.00 0.00 O ATOM 116 CB MET 11 4.490 -0.248 0.314 1.00 0.00 C ATOM 117 SD MET 11 5.026 -0.846 -2.338 1.00 0.00 S ATOM 118 CE MET 11 3.306 -0.575 -2.757 1.00 0.00 C ATOM 119 CG MET 11 5.210 0.260 -0.925 1.00 0.00 C ATOM 120 N LYS 12 2.749 1.856 2.488 1.00 0.00 N ATOM 121 CA LYS 12 1.840 3.002 2.645 1.00 0.00 C ATOM 122 C LYS 12 2.389 2.651 4.019 1.00 0.00 C ATOM 123 O LYS 12 2.394 1.493 4.410 1.00 0.00 O ATOM 125 CB LYS 12 0.445 2.656 2.121 1.00 0.00 C ATOM 126 CD LYS 12 -1.028 2.101 0.166 1.00 0.00 C ATOM 127 CE LYS 12 -1.073 1.780 -1.320 1.00 0.00 C ATOM 128 CG LYS 12 0.393 2.383 0.627 1.00 0.00 C ATOM 132 NZ LYS 12 -2.457 1.484 -1.781 1.00 0.00 N ATOM 133 N LYS 13 2.850 3.658 4.751 1.00 0.00 N ATOM 134 CA LYS 13 3.292 3.489 6.077 1.00 0.00 C ATOM 135 C LYS 13 4.762 3.361 5.692 1.00 0.00 C ATOM 136 O LYS 13 5.569 4.263 5.879 1.00 0.00 O ATOM 138 CB LYS 13 2.602 2.287 6.724 1.00 0.00 C ATOM 139 CD LYS 13 0.492 1.250 7.604 1.00 0.00 C ATOM 140 CE LYS 13 -1.001 1.435 7.820 1.00 0.00 C ATOM 141 CG LYS 13 1.109 2.474 6.947 1.00 0.00 C ATOM 145 NZ LYS 13 -1.628 0.229 8.428 1.00 0.00 N ATOM 146 N LYS 14 5.136 2.207 5.151 1.00 0.00 N ATOM 147 CA LYS 14 6.545 1.866 4.969 1.00 0.00 C ATOM 148 C LYS 14 6.895 2.925 3.930 1.00 0.00 C ATOM 149 O LYS 14 7.869 3.623 4.155 1.00 0.00 O ATOM 151 CB LYS 14 6.692 0.406 4.536 1.00 0.00 C ATOM 152 CD LYS 14 6.394 -1.336 2.753 1.00 0.00 C ATOM 153 CE LYS 14 5.819 -1.636 1.379 1.00 0.00 C ATOM 154 CG LYS 14 6.213 0.128 3.120 1.00 0.00 C ATOM 158 NZ LYS 14 6.492 -0.848 0.310 1.00 0.00 N ATOM 159 N PHE 15 5.925 3.208 3.075 1.00 0.00 N ATOM 160 CA PHE 15 6.161 4.007 1.822 1.00 0.00 C ATOM 161 C PHE 15 5.958 5.307 2.610 1.00 0.00 C ATOM 162 O PHE 15 6.193 6.395 2.090 1.00 0.00 O ATOM 164 CB PHE 15 5.163 3.604 0.734 1.00 0.00 C ATOM 165 CG PHE 15 5.382 4.301 -0.578 1.00 0.00 C ATOM 166 CZ PHE 15 5.783 5.596 -3.005 1.00 0.00 C ATOM 167 CD1 PHE 15 6.433 3.940 -1.404 1.00 0.00 C ATOM 168 CE1 PHE 15 6.634 4.582 -2.611 1.00 0.00 C ATOM 169 CD2 PHE 15 4.539 5.319 -0.987 1.00 0.00 C ATOM 170 CE2 PHE 15 4.741 5.961 -2.194 1.00 0.00 C ATOM 171 N LYS 16 5.529 5.188 3.863 1.00 0.00 N ATOM 172 CA LYS 16 5.129 6.393 4.682 1.00 0.00 C ATOM 173 C LYS 16 3.785 7.094 4.643 1.00 0.00 C ATOM 174 O LYS 16 3.675 8.244 5.062 1.00 0.00 O ATOM 176 CB LYS 16 6.089 7.557 4.427 1.00 0.00 C ATOM 177 CD LYS 16 6.854 9.869 5.035 1.00 0.00 C ATOM 178 CE LYS 16 6.581 11.097 5.888 1.00 0.00 C ATOM 179 CG LYS 16 5.826 8.779 5.293 1.00 0.00 C ATOM 183 NZ LYS 16 7.582 12.174 5.647 1.00 0.00 N ATOM 184 N ASN 17 2.773 6.412 4.110 1.00 0.00 N ATOM 185 CA ASN 17 1.413 6.900 4.252 1.00 0.00 C ATOM 186 C ASN 17 0.764 6.503 5.569 1.00 0.00 C ATOM 187 O ASN 17 1.438 6.103 6.514 1.00 0.00 O ATOM 189 CB ASN 17 0.545 6.413 3.091 1.00 0.00 C ATOM 190 CG ASN 17 0.936 7.041 1.767 1.00 0.00 C ATOM 191 OD1 ASN 17 1.096 8.258 1.670 1.00 0.00 O ATOM 194 ND2 ASN 17 1.090 6.211 0.742 1.00 0.00 N ATOM 195 N CYS 18 -0.562 6.626 5.574 1.00 0.00 N ATOM 196 CA CYS 18 -1.485 6.666 6.733 1.00 0.00 C ATOM 197 C CYS 18 -1.591 5.144 6.844 1.00 0.00 C ATOM 198 O CYS 18 -2.589 4.605 7.310 1.00 0.00 O ATOM 200 CB CYS 18 -2.746 7.461 6.387 1.00 0.00 C ATOM 201 SG CYS 18 -2.458 9.218 6.075 1.00 0.00 S ATOM 202 N GLU 19 -0.542 4.462 6.402 1.00 0.00 N ATOM 203 CA GLU 19 -0.471 2.923 6.589 1.00 0.00 C ATOM 204 C GLU 19 0.469 2.608 7.754 1.00 0.00 C ATOM 205 O GLU 19 1.665 2.933 7.725 1.00 0.00 O ATOM 207 CB GLU 19 -0.002 2.248 5.298 1.00 0.00 C ATOM 208 CD GLU 19 -2.240 1.585 4.332 1.00 0.00 C ATOM 209 CG GLU 19 -0.971 2.391 4.136 1.00 0.00 C ATOM 210 OE1 GLU 19 -2.152 0.340 4.379 1.00 0.00 O ATOM 211 OE2 GLU 19 -3.323 2.199 4.440 1.00 0.00 O ATOM 212 N VAL 20 -0.093 1.935 8.759 1.00 0.00 N ATOM 213 CA VAL 20 -0.118 2.070 10.331 1.00 0.00 C ATOM 214 C VAL 20 1.397 2.226 10.512 1.00 0.00 C ATOM 215 O VAL 20 1.860 2.981 11.393 1.00 0.00 O ATOM 217 CB VAL 20 -0.789 0.852 10.991 1.00 0.00 C ATOM 218 CG1 VAL 20 -2.240 0.739 10.550 1.00 0.00 C ATOM 219 CG2 VAL 20 -0.027 -0.422 10.659 1.00 0.00 C ATOM 220 N ARG 21 2.189 1.539 9.663 1.00 0.00 N ATOM 221 CA ARG 21 2.423 0.471 7.981 1.00 0.00 C ATOM 222 C ARG 21 2.617 -0.960 8.487 1.00 0.00 C ATOM 223 O ARG 21 3.260 -1.198 9.519 1.00 0.00 O ATOM 225 CB ARG 21 3.601 1.007 7.165 1.00 0.00 C ATOM 226 CD ARG 21 3.357 3.503 7.274 1.00 0.00 C ATOM 228 NE ARG 21 4.725 3.810 7.681 1.00 0.00 N ATOM 229 CG ARG 21 3.289 2.273 6.384 1.00 0.00 C ATOM 230 CZ ARG 21 5.056 4.798 8.506 1.00 0.00 C ATOM 233 NH1 ARG 21 6.328 5.002 8.821 1.00 0.00 N ATOM 236 NH2 ARG 21 4.113 5.580 9.015 1.00 0.00 N ATOM 237 N CYS 22 2.076 -1.903 7.715 1.00 0.00 N ATOM 238 CA CYS 22 1.984 -3.253 8.015 1.00 0.00 C ATOM 239 C CYS 22 3.421 -3.451 7.531 1.00 0.00 C ATOM 240 O CYS 22 3.691 -3.534 6.325 1.00 0.00 O ATOM 242 CB CYS 22 0.819 -3.892 7.258 1.00 0.00 C ATOM 243 SG CYS 22 -0.808 -3.233 7.695 1.00 0.00 S ATOM 244 N ASP 23 4.328 -3.562 8.504 1.00 0.00 N ATOM 245 CA ASP 23 5.737 -3.669 8.300 1.00 0.00 C ATOM 246 C ASP 23 5.769 -5.066 7.702 1.00 0.00 C ATOM 247 O ASP 23 4.754 -5.759 7.672 1.00 0.00 O ATOM 249 CB ASP 23 6.485 -3.473 9.620 1.00 0.00 C ATOM 250 CG ASP 23 7.957 -3.171 9.416 1.00 0.00 C ATOM 251 OD1 ASP 23 8.526 -3.646 8.412 1.00 0.00 O ATOM 252 OD2 ASP 23 8.539 -2.459 10.262 1.00 0.00 O ATOM 253 N GLU 24 6.935 -5.470 7.212 1.00 0.00 N ATOM 254 CA GLU 24 5.659 -6.809 6.151 1.00 0.00 C ATOM 255 C GLU 24 6.954 -6.847 6.969 1.00 0.00 C ATOM 256 O GLU 24 7.475 -7.927 7.250 1.00 0.00 O ATOM 258 CB GLU 24 5.518 -6.373 4.691 1.00 0.00 C ATOM 259 CD GLU 24 7.729 -5.342 4.036 1.00 0.00 C ATOM 260 CG GLU 24 6.791 -6.521 3.873 1.00 0.00 C ATOM 261 OE1 GLU 24 7.524 -4.544 4.975 1.00 0.00 O ATOM 262 OE2 GLU 24 8.671 -5.215 3.225 1.00 0.00 O ATOM 263 N SER 25 7.452 -5.677 7.369 1.00 0.00 N ATOM 264 CA SER 25 8.846 -5.596 7.990 1.00 0.00 C ATOM 265 C SER 25 8.436 -5.804 9.444 1.00 0.00 C ATOM 266 O SER 25 8.675 -6.878 10.002 1.00 0.00 O ATOM 268 CB SER 25 9.510 -4.262 7.644 1.00 0.00 C ATOM 270 OG SER 25 10.799 -4.168 8.225 1.00 0.00 O ATOM 271 N ASN 26 7.798 -4.819 10.064 1.00 0.00 N ATOM 272 CA ASN 26 7.282 -5.011 11.461 1.00 0.00 C ATOM 273 C ASN 26 5.825 -4.756 11.148 1.00 0.00 C ATOM 274 O ASN 26 5.387 -3.614 11.134 1.00 0.00 O ATOM 276 CB ASN 26 7.985 -4.057 12.428 1.00 0.00 C ATOM 277 CG ASN 26 9.473 -4.327 12.535 1.00 0.00 C ATOM 278 OD1 ASN 26 9.889 -5.380 13.019 1.00 0.00 O ATOM 281 ND2 ASN 26 10.280 -3.375 12.082 1.00 0.00 N ATOM 282 N HIS 27 5.068 -5.826 10.847 1.00 0.00 N ATOM 283 CA HIS 27 3.601 -5.592 10.621 1.00 0.00 C ATOM 284 C HIS 27 3.134 -4.246 11.178 1.00 0.00 C ATOM 285 O HIS 27 3.932 -3.311 11.286 1.00 0.00 O ATOM 287 CB HIS 27 2.776 -6.716 11.250 1.00 0.00 C ATOM 288 CG HIS 27 2.892 -6.789 12.741 1.00 0.00 C ATOM 289 ND1 HIS 27 3.949 -7.405 13.376 1.00 0.00 N ATOM 290 CE1 HIS 27 3.775 -7.309 14.707 1.00 0.00 C ATOM 291 CD2 HIS 27 2.094 -6.330 13.868 1.00 0.00 C ATOM 293 NE2 HIS 27 2.664 -6.666 15.009 1.00 0.00 N ATOM 294 N CYS 28 1.857 -4.149 11.542 1.00 0.00 N ATOM 295 CA CYS 28 1.002 -3.034 11.801 1.00 0.00 C ATOM 296 C CYS 28 1.772 -2.176 12.796 1.00 0.00 C ATOM 297 O CYS 28 1.433 -0.997 12.966 1.00 0.00 O ATOM 299 CB CYS 28 -0.353 -3.509 12.331 1.00 0.00 C ATOM 300 SG CYS 28 -1.355 -4.404 11.121 1.00 0.00 S ATOM 301 N VAL 29 2.830 -2.657 13.413 1.00 0.00 N ATOM 302 CA VAL 29 3.661 -1.908 14.280 1.00 0.00 C ATOM 303 C VAL 29 5.009 -1.311 13.919 1.00 0.00 C ATOM 304 O VAL 29 5.590 -0.588 14.710 1.00 0.00 O ATOM 306 CB VAL 29 4.016 -2.704 15.550 1.00 0.00 C ATOM 307 CG1 VAL 29 2.754 -3.085 16.310 1.00 0.00 C ATOM 308 CG2 VAL 29 4.822 -3.944 15.194 1.00 0.00 C ATOM 309 N GLU 30 5.509 -1.606 12.728 1.00 0.00 N ATOM 310 CA GLU 30 6.442 -0.933 11.778 1.00 0.00 C ATOM 311 C GLU 30 6.584 -1.088 10.278 1.00 0.00 C ATOM 312 O GLU 30 6.867 -2.166 9.746 1.00 0.00 O ATOM 314 CB GLU 30 7.895 -1.178 12.188 1.00 0.00 C ATOM 315 CD GLU 30 9.718 -0.832 13.903 1.00 0.00 C ATOM 316 CG GLU 30 8.269 -0.581 13.536 1.00 0.00 C ATOM 317 OE1 GLU 30 10.555 -0.928 12.981 1.00 0.00 O ATOM 318 OE2 GLU 30 10.017 -0.932 15.111 1.00 0.00 O ATOM 319 N VAL 31 6.386 0.026 9.606 1.00 0.00 N ATOM 320 CA VAL 31 6.444 0.096 8.225 1.00 0.00 C ATOM 321 C VAL 31 7.616 -0.571 7.532 1.00 0.00 C ATOM 322 O VAL 31 7.879 -1.743 7.791 1.00 0.00 O ATOM 324 CB VAL 31 6.438 1.556 7.733 1.00 0.00 C ATOM 325 CG1 VAL 31 5.152 2.252 8.151 1.00 0.00 C ATOM 326 CG2 VAL 31 7.650 2.303 8.268 1.00 0.00 C ATOM 327 N ARG 32 8.328 0.154 6.668 1.00 0.00 N ATOM 328 CA ARG 32 9.604 -0.170 6.138 1.00 0.00 C ATOM 329 C ARG 32 9.051 -1.464 5.609 1.00 0.00 C ATOM 330 O ARG 32 9.710 -2.486 5.697 1.00 0.00 O ATOM 332 CB ARG 32 10.659 -0.179 7.246 1.00 0.00 C ATOM 333 CD ARG 32 13.003 0.450 7.887 1.00 0.00 C ATOM 335 NE ARG 32 14.403 0.478 7.472 1.00 0.00 N ATOM 336 CG ARG 32 12.080 0.037 6.752 1.00 0.00 C ATOM 337 CZ ARG 32 15.024 1.559 7.012 1.00 0.00 C ATOM 340 NH1 ARG 32 16.300 1.490 6.658 1.00 0.00 N ATOM 343 NH2 ARG 32 14.369 2.707 6.909 1.00 0.00 N ATOM 344 N CYS 33 7.843 -1.459 5.075 1.00 0.00 N ATOM 345 CA CYS 33 7.372 -2.714 4.521 1.00 0.00 C ATOM 346 C CYS 33 7.810 -3.051 3.115 1.00 0.00 C ATOM 347 O CYS 33 7.618 -2.281 2.180 1.00 0.00 O ATOM 349 CB CYS 33 5.842 -2.764 4.532 1.00 0.00 C ATOM 350 SG CYS 33 5.142 -4.301 3.887 1.00 0.00 S ATOM 351 N SER 34 8.388 -4.242 2.978 1.00 0.00 N ATOM 352 CA SER 34 8.659 -4.952 1.749 1.00 0.00 C ATOM 353 C SER 34 9.340 -3.704 1.212 1.00 0.00 C ATOM 354 O SER 34 9.043 -3.255 0.115 1.00 0.00 O ATOM 356 CB SER 34 7.356 -5.459 1.126 1.00 0.00 C ATOM 358 OG SER 34 7.610 -6.471 0.168 1.00 0.00 O ATOM 359 N ASP 35 10.258 -3.144 1.991 1.00 0.00 N ATOM 360 CA ASP 35 11.304 -2.244 1.537 1.00 0.00 C ATOM 361 C ASP 35 10.526 -0.941 1.350 1.00 0.00 C ATOM 362 O ASP 35 10.762 -0.183 0.415 1.00 0.00 O ATOM 364 CB ASP 35 11.968 -2.789 0.271 1.00 0.00 C ATOM 365 CG ASP 35 13.320 -2.159 0.005 1.00 0.00 C ATOM 366 OD1 ASP 35 13.975 -1.722 0.975 1.00 0.00 O ATOM 367 OD2 ASP 35 13.727 -2.102 -1.175 1.00 0.00 O ATOM 368 N THR 36 9.590 -0.695 2.258 1.00 0.00 N ATOM 369 CA THR 36 8.203 -0.156 1.993 1.00 0.00 C ATOM 370 C THR 36 8.844 0.818 0.997 1.00 0.00 C ATOM 371 O THR 36 8.479 0.841 -0.198 1.00 0.00 O ATOM 373 CB THR 36 7.541 0.357 3.285 1.00 0.00 C ATOM 375 OG1 THR 36 8.348 1.392 3.861 1.00 0.00 O ATOM 376 CG2 THR 36 7.401 -0.770 4.296 1.00 0.00 C ATOM 377 N LYS 37 9.829 1.612 1.465 1.00 0.00 N ATOM 378 CA LYS 37 11.255 1.993 2.759 1.00 0.00 C ATOM 379 C LYS 37 11.165 2.592 4.177 1.00 0.00 C ATOM 380 O LYS 37 11.831 2.131 5.093 1.00 0.00 O ATOM 382 CB LYS 37 12.290 2.941 2.152 1.00 0.00 C ATOM 383 CD LYS 37 14.510 4.094 2.361 1.00 0.00 C ATOM 384 CE LYS 37 15.686 4.397 3.276 1.00 0.00 C ATOM 385 CG LYS 37 13.466 3.244 3.067 1.00 0.00 C ATOM 389 NZ LYS 37 16.717 5.229 2.597 1.00 0.00 N ATOM 390 N TYR 38 10.345 3.624 4.356 1.00 0.00 N ATOM 391 CA TYR 38 10.179 4.275 5.678 1.00 0.00 C ATOM 392 C TYR 38 9.353 3.490 6.654 1.00 0.00 C ATOM 393 O TYR 38 8.692 2.554 6.288 1.00 0.00 O ATOM 395 CB TYR 38 9.546 5.659 5.517 1.00 0.00 C ATOM 396 CG TYR 38 10.446 6.669 4.840 1.00 0.00 C ATOM 398 OH TYR 38 12.912 9.443 2.966 1.00 0.00 O ATOM 399 CZ TYR 38 12.096 8.525 3.587 1.00 0.00 C ATOM 400 CD1 TYR 38 10.295 6.965 3.492 1.00 0.00 C ATOM 401 CE1 TYR 38 11.112 7.886 2.865 1.00 0.00 C ATOM 402 CD2 TYR 38 11.443 7.323 5.553 1.00 0.00 C ATOM 403 CE2 TYR 38 12.270 8.247 4.943 1.00 0.00 C ATOM 404 N THR 39 9.418 3.864 7.932 1.00 0.00 N ATOM 405 CA THR 39 8.871 2.993 8.950 1.00 0.00 C ATOM 406 C THR 39 7.594 3.684 9.376 1.00 0.00 C ATOM 407 O THR 39 7.679 4.860 9.759 1.00 0.00 O ATOM 409 CB THR 39 9.864 2.785 10.109 1.00 0.00 C ATOM 411 OG1 THR 39 11.063 2.179 9.612 1.00 0.00 O ATOM 412 CG2 THR 39 9.262 1.875 11.169 1.00 0.00 C ATOM 413 N LEU 40 6.413 3.051 9.297 1.00 0.00 N ATOM 414 CA LEU 40 5.120 3.850 9.422 1.00 0.00 C ATOM 415 C LEU 40 4.478 2.671 10.687 1.00 0.00 C ATOM 416 O LEU 40 4.538 1.450 10.481 1.00 0.00 O ATOM 418 CB LEU 40 4.426 3.960 8.063 1.00 0.00 C ATOM 419 CG LEU 40 5.200 4.691 6.964 1.00 0.00 C ATOM 420 CD1 LEU 40 4.477 4.577 5.631 1.00 0.00 C ATOM 421 CD2 LEU 40 5.406 6.153 7.331 1.00 0.00 C ATOM 422 N CYS 41 3.817 3.184 11.719 1.00 0.00 N ATOM 423 CA CYS 41 3.323 2.431 12.508 1.00 0.00 C ATOM 424 C CYS 41 1.776 3.317 13.061 1.00 0.00 C ATOM 425 O CYS 41 1.452 4.478 12.770 1.00 0.00 O ATOM 427 OXT CYS 41 0.884 2.854 13.788 1.00 0.00 O ATOM 428 CB CYS 41 4.302 2.125 13.643 1.00 0.00 C ATOM 429 SG CYS 41 4.917 3.586 14.512 1.00 0.00 S TER END