####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 41 ( 335), selected 41 , name T0955TS044_1 # Molecule2: number of CA atoms 41 ( 665), selected 41 , name T0955.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS044_1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 41 1 - 41 1.90 1.90 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 41 1 - 41 1.90 1.90 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 23 17 - 39 0.99 2.62 LCS_AVERAGE: 46.22 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 41 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 1 S 1 3 41 41 3 3 4 15 31 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT Q 2 Q 2 15 41 41 9 13 17 23 31 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 3 E 3 15 41 41 9 13 14 23 30 36 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 4 T 4 15 41 41 9 13 19 27 31 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT R 5 R 5 15 41 41 9 13 23 31 34 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 6 K 6 15 41 41 9 13 19 31 33 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 7 K 7 15 41 41 9 13 19 27 33 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 8 C 8 15 41 41 9 13 23 31 34 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 9 T 9 15 41 41 9 15 26 31 34 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 10 E 10 15 41 41 9 13 23 31 34 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT M 11 M 11 15 41 41 9 13 22 31 34 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 12 K 12 15 41 41 8 21 26 31 34 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 13 K 13 15 41 41 8 13 26 31 34 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 14 K 14 15 41 41 8 21 26 31 34 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT F 15 F 15 15 41 41 4 21 26 31 34 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 16 K 16 15 41 41 3 8 16 20 33 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT N 17 N 17 23 41 41 6 21 26 31 34 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 18 C 18 23 41 41 12 21 26 31 34 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 19 E 19 23 41 41 12 21 26 31 34 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT V 20 V 20 23 41 41 12 21 26 31 34 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT R 21 R 21 23 41 41 12 21 26 31 34 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 22 C 22 23 41 41 4 9 23 30 34 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT D 23 D 23 23 41 41 4 6 21 29 34 37 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 24 E 24 23 41 41 4 21 26 31 34 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT S 25 S 25 23 41 41 12 21 26 31 34 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT N 26 N 26 23 41 41 12 21 26 31 34 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT H 27 H 27 23 41 41 12 21 26 31 34 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 28 C 28 23 41 41 12 21 26 31 34 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT V 29 V 29 23 41 41 12 21 26 31 34 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 30 E 30 23 41 41 12 21 26 31 34 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT V 31 V 31 23 41 41 12 21 26 31 34 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT R 32 R 32 23 41 41 5 21 26 31 34 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 33 C 33 23 41 41 5 21 26 31 34 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT S 34 S 34 23 41 41 12 21 26 31 34 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT D 35 D 35 23 41 41 4 11 22 31 34 37 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 36 T 36 23 41 41 6 19 26 31 34 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 37 K 37 23 41 41 10 21 26 31 34 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT Y 38 Y 38 23 41 41 6 21 26 31 34 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 39 T 39 23 41 41 3 18 26 31 34 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT L 40 L 40 10 41 41 3 13 26 31 34 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 41 C 41 10 41 41 3 8 22 31 34 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_AVERAGE LCS_A: 82.07 ( 46.22 100.00 100.00 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 12 21 26 31 34 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 GDT PERCENT_AT 29.27 51.22 63.41 75.61 82.93 92.68 97.56 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 GDT RMS_LOCAL 0.39 0.71 0.94 1.20 1.34 1.73 1.82 1.90 1.90 1.90 1.90 1.90 1.90 1.90 1.90 1.90 1.90 1.90 1.90 1.90 GDT RMS_ALL_AT 2.70 2.40 2.22 2.05 2.14 1.91 1.91 1.90 1.90 1.90 1.90 1.90 1.90 1.90 1.90 1.90 1.90 1.90 1.90 1.90 # Checking swapping # possible swapping detected: E 3 E 3 # possible swapping detected: E 19 E 19 # possible swapping detected: D 23 D 23 # possible swapping detected: E 24 E 24 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA S 1 S 1 3.065 0 0.026 0.730 4.691 12.273 13.030 4.527 LGA Q 2 Q 2 3.111 0 0.185 0.946 4.129 20.455 19.798 2.512 LGA E 3 E 3 3.959 0 0.024 1.501 9.933 14.545 6.667 9.569 LGA T 4 T 4 3.012 0 0.078 1.022 4.335 28.182 21.039 3.964 LGA R 5 R 5 1.052 0 0.030 0.193 2.141 65.909 64.959 1.529 LGA K 6 K 6 1.958 0 0.028 1.236 9.177 50.909 25.859 9.177 LGA K 7 K 7 2.605 0 0.034 0.973 7.705 35.455 18.990 7.705 LGA C 8 C 8 1.971 0 0.068 0.749 4.830 58.182 45.455 4.830 LGA T 9 T 9 0.547 0 0.021 0.091 1.263 86.364 82.078 0.941 LGA E 10 E 10 1.254 0 0.034 0.487 4.105 69.545 48.687 4.105 LGA M 11 M 11 1.805 0 0.046 0.881 3.242 50.909 44.091 1.368 LGA K 12 K 12 1.438 0 0.045 0.623 2.316 61.818 55.960 2.316 LGA K 13 K 13 0.733 0 0.039 0.584 2.936 81.818 63.838 1.457 LGA K 14 K 14 0.515 0 0.053 0.587 1.538 86.364 75.152 1.532 LGA F 15 F 15 1.120 0 0.089 0.245 2.754 65.455 57.355 2.712 LGA K 16 K 16 3.061 0 0.619 1.063 5.746 22.273 14.343 5.746 LGA N 17 N 17 0.919 0 0.294 0.580 2.952 86.364 64.091 2.952 LGA C 18 C 18 1.020 0 0.020 0.051 1.085 69.545 73.636 0.894 LGA E 19 E 19 1.020 0 0.204 0.371 1.192 73.636 72.727 1.016 LGA V 20 V 20 1.243 0 0.031 0.060 1.655 61.818 63.377 1.324 LGA R 21 R 21 1.369 0 0.014 1.269 4.592 58.182 33.058 3.571 LGA C 22 C 22 2.895 0 0.170 0.948 6.811 30.000 21.818 6.811 LGA D 23 D 23 3.296 0 0.382 1.180 5.596 11.818 11.818 3.226 LGA E 24 E 24 1.939 0 0.039 0.602 3.971 50.909 36.566 3.278 LGA S 25 S 25 1.427 0 0.123 0.699 2.925 51.364 49.697 2.925 LGA N 26 N 26 1.935 0 0.090 1.183 6.719 44.545 27.955 6.719 LGA H 27 H 27 2.314 0 0.082 0.298 3.002 35.455 29.636 3.002 LGA C 28 C 28 1.999 0 0.035 0.789 3.578 47.727 40.000 3.578 LGA V 29 V 29 1.613 0 0.056 0.081 1.884 54.545 52.987 1.582 LGA E 30 E 30 1.115 0 0.111 0.666 2.471 69.545 64.242 1.383 LGA V 31 V 31 0.618 0 0.036 0.091 1.058 90.909 84.675 0.933 LGA R 32 R 32 0.573 0 0.141 1.009 6.711 78.636 48.264 6.711 LGA C 33 C 33 0.519 0 0.548 0.999 3.012 70.455 65.152 2.725 LGA S 34 S 34 1.546 0 0.241 0.559 2.690 45.000 54.545 1.386 LGA D 35 D 35 2.875 0 0.193 0.954 7.529 30.000 16.364 7.529 LGA T 36 T 36 1.990 0 0.028 0.161 2.703 59.091 48.571 2.703 LGA K 37 K 37 0.505 0 0.127 1.513 5.602 82.273 57.778 5.602 LGA Y 38 Y 38 0.654 0 0.024 1.090 5.012 86.364 50.303 5.012 LGA T 39 T 39 1.553 0 0.053 0.085 3.503 55.000 39.481 3.332 LGA L 40 L 40 1.064 0 0.076 0.971 3.736 73.636 52.727 2.450 LGA C 41 C 41 1.584 0 0.143 0.813 3.177 54.545 48.571 3.177 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 41 164 164 100.00 335 335 100.00 41 41 SUMMARY(RMSD_GDC): 1.904 1.930 2.852 55.654 45.496 28.381 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 41 41 4.0 41 1.90 81.707 89.998 2.045 LGA_LOCAL RMSD: 1.904 Number of atoms: 41 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 1.904 Number of assigned atoms: 41 Std_ASGN_ATOMS RMSD: 1.904 Standard rmsd on all 41 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.071952 * X + -0.887787 * Y + 0.454596 * Z + 4.590978 Y_new = 0.951815 * X + -0.075109 * Y + -0.297332 * Z + -11.063423 Z_new = 0.298112 * X + 0.454085 * Y + 0.839605 * Z + -10.199925 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 1.495345 -0.302714 0.495777 [DEG: 85.6770 -17.3443 28.4059 ] ZXZ: 0.991573 0.574242 0.580939 [DEG: 56.8130 32.9016 33.2854 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0955TS044_1 REMARK 2: T0955.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS044_1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 41 41 4.0 41 1.90 89.998 1.90 REMARK ---------------------------------------------------------- MOLECULE T0955TS044_1 PFRMAT TS TARGET T0955 MODEL 1 PARENT N/A ATOM 1 N SER 1 -2.579 -12.924 0.286 1.00 0.00 N ATOM 2 CA SER 1 -1.741 -13.396 1.385 1.00 0.00 C ATOM 3 C SER 1 -1.398 -12.301 2.383 1.00 0.00 C ATOM 4 O SER 1 -1.030 -11.186 2.002 1.00 0.00 O ATOM 5 CB SER 1 -0.450 -13.990 0.866 1.00 0.00 C ATOM 6 OG SER 1 0.401 -14.323 1.934 1.00 0.00 O ATOM 14 N GLN 2 -1.469 -12.656 3.664 1.00 0.00 N ATOM 15 CA GLN 2 -1.163 -11.751 4.765 1.00 0.00 C ATOM 16 C GLN 2 0.253 -11.206 4.678 1.00 0.00 C ATOM 17 O GLN 2 0.512 -10.094 5.128 1.00 0.00 O ATOM 18 CB GLN 2 -1.367 -12.446 6.108 1.00 0.00 C ATOM 19 CG GLN 2 -1.197 -11.532 7.311 1.00 0.00 C ATOM 20 CD GLN 2 -2.238 -10.429 7.358 1.00 0.00 C ATOM 21 OE1 GLN 2 -3.429 -10.660 7.119 1.00 0.00 O ATOM 22 NE2 GLN 2 -1.795 -9.218 7.678 1.00 0.00 N ATOM 31 N GLU 3 1.166 -11.982 4.104 1.00 0.24 N ATOM 32 CA GLU 3 2.548 -11.559 3.965 1.00 0.24 C ATOM 33 C GLU 3 2.682 -10.361 3.024 1.00 0.24 C ATOM 34 O GLU 3 3.606 -9.561 3.173 1.00 0.24 O ATOM 35 CB GLU 3 3.407 -12.719 3.472 1.00 0.24 C ATOM 36 CG GLU 3 3.548 -13.849 4.483 1.00 0.24 C ATOM 37 CD GLU 3 4.203 -13.413 5.768 1.00 0.24 C ATOM 38 OE1 GLU 3 5.218 -12.764 5.708 1.00 0.24 O ATOM 39 OE2 GLU 3 3.680 -13.724 6.815 1.00 0.24 O ATOM 46 N THR 4 1.769 -10.231 2.053 1.00 0.00 N ATOM 47 CA THR 4 1.823 -9.099 1.139 1.00 0.00 C ATOM 48 C THR 4 1.158 -7.917 1.804 1.00 0.00 C ATOM 49 O THR 4 1.523 -6.775 1.543 1.00 0.00 O ATOM 50 CB THR 4 1.132 -9.410 -0.201 1.00 0.00 C ATOM 51 OG1 THR 4 -0.259 -9.669 0.021 1.00 0.00 O ATOM 52 CG2 THR 4 1.772 -10.634 -0.838 1.00 0.00 C ATOM 60 N ARG 5 0.234 -8.195 2.725 1.00 0.00 N ATOM 61 CA ARG 5 -0.385 -7.137 3.513 1.00 0.00 C ATOM 62 C ARG 5 0.676 -6.555 4.454 1.00 0.00 C ATOM 63 O ARG 5 0.727 -5.343 4.677 1.00 0.00 O ATOM 64 CB ARG 5 -1.567 -7.673 4.315 1.00 0.00 C ATOM 65 CG ARG 5 -2.781 -8.087 3.491 1.00 0.00 C ATOM 66 CD ARG 5 -3.842 -8.687 4.347 1.00 0.00 C ATOM 67 NE ARG 5 -5.006 -9.108 3.582 1.00 0.00 N ATOM 68 CZ ARG 5 -5.979 -9.914 4.049 1.00 0.00 C ATOM 69 NH1 ARG 5 -5.910 -10.393 5.276 1.00 0.00 N ATOM 70 NH2 ARG 5 -7.002 -10.230 3.270 1.00 0.00 N ATOM 84 N LYS 6 1.547 -7.434 4.968 1.00 0.00 N ATOM 85 CA LYS 6 2.666 -7.040 5.814 1.00 0.00 C ATOM 86 C LYS 6 3.684 -6.234 5.021 1.00 0.00 C ATOM 87 O LYS 6 4.205 -5.231 5.510 1.00 0.00 O ATOM 88 CB LYS 6 3.362 -8.270 6.401 1.00 0.00 C ATOM 89 CG LYS 6 2.587 -9.043 7.458 1.00 0.00 C ATOM 90 CD LYS 6 3.384 -10.266 7.887 1.00 0.00 C ATOM 91 CE LYS 6 2.634 -11.125 8.892 1.00 0.00 C ATOM 92 NZ LYS 6 3.414 -12.342 9.253 1.00 0.00 N ATOM 106 N LYS 7 3.948 -6.666 3.787 1.00 0.00 N ATOM 107 CA LYS 7 4.888 -5.974 2.921 1.00 0.00 C ATOM 108 C LYS 7 4.349 -4.605 2.540 1.00 0.00 C ATOM 109 O LYS 7 5.096 -3.630 2.485 1.00 0.00 O ATOM 110 CB LYS 7 5.175 -6.787 1.665 1.00 0.00 C ATOM 111 CG LYS 7 6.268 -6.178 0.806 1.00 0.00 C ATOM 112 CD LYS 7 7.590 -6.235 1.558 1.00 0.00 C ATOM 113 CE LYS 7 8.746 -5.671 0.752 1.00 0.00 C ATOM 114 NZ LYS 7 10.018 -5.739 1.524 1.00 0.00 N ATOM 128 N CYS 8 3.042 -4.534 2.294 1.00 0.00 N ATOM 129 CA CYS 8 2.396 -3.274 1.977 1.00 0.00 C ATOM 130 C CYS 8 2.430 -2.351 3.173 1.00 0.00 C ATOM 131 O CYS 8 2.574 -1.144 3.002 1.00 0.00 O ATOM 132 CB CYS 8 0.947 -3.493 1.555 1.00 0.00 C ATOM 133 SG CYS 8 0.770 -4.302 -0.044 1.00 0.00 S ATOM 139 N THR 9 2.323 -2.918 4.378 1.00 0.00 N ATOM 140 CA THR 9 2.418 -2.147 5.610 1.00 0.00 C ATOM 141 C THR 9 3.814 -1.540 5.724 1.00 0.00 C ATOM 142 O THR 9 3.950 -0.373 6.089 1.00 0.00 O ATOM 143 CB THR 9 2.115 -3.007 6.849 1.00 0.00 C ATOM 144 OG1 THR 9 0.778 -3.520 6.762 1.00 0.00 O ATOM 145 CG2 THR 9 2.257 -2.168 8.110 1.00 0.00 C ATOM 153 N GLU 10 4.847 -2.327 5.397 1.00 0.00 N ATOM 154 CA GLU 10 6.217 -1.814 5.364 1.00 0.00 C ATOM 155 C GLU 10 6.310 -0.624 4.429 1.00 0.00 C ATOM 156 O GLU 10 6.857 0.423 4.788 1.00 0.00 O ATOM 157 CB GLU 10 7.220 -2.867 4.886 1.00 0.00 C ATOM 158 CG GLU 10 8.645 -2.330 4.807 1.00 0.00 C ATOM 159 CD GLU 10 9.639 -3.292 4.209 1.00 0.00 C ATOM 160 OE1 GLU 10 9.282 -4.413 3.936 1.00 0.00 O ATOM 161 OE2 GLU 10 10.759 -2.889 3.995 1.00 0.00 O ATOM 168 N MET 11 5.779 -0.797 3.221 1.00 0.00 N ATOM 169 CA MET 11 5.802 0.260 2.235 1.00 0.00 C ATOM 170 C MET 11 4.976 1.448 2.697 1.00 0.00 C ATOM 171 O MET 11 5.353 2.581 2.437 1.00 0.00 O ATOM 172 CB MET 11 5.290 -0.257 0.899 1.00 0.00 C ATOM 173 CG MET 11 6.211 -1.258 0.218 1.00 0.00 C ATOM 174 SD MET 11 7.860 -0.592 -0.072 1.00 0.00 S ATOM 175 CE MET 11 7.495 0.724 -1.227 1.00 0.00 C ATOM 185 N LYS 12 3.878 1.192 3.410 1.00 0.34 N ATOM 186 CA LYS 12 3.035 2.242 3.968 1.00 0.34 C ATOM 187 C LYS 12 3.811 3.081 4.962 1.00 0.34 C ATOM 188 O LYS 12 3.669 4.301 4.997 1.00 0.34 O ATOM 189 CB LYS 12 1.792 1.644 4.632 1.00 0.34 C ATOM 190 CG LYS 12 0.813 2.671 5.174 1.00 0.34 C ATOM 191 CD LYS 12 -0.429 2.003 5.744 1.00 0.34 C ATOM 192 CE LYS 12 -1.406 3.033 6.295 1.00 0.34 C ATOM 193 NZ LYS 12 -2.613 2.392 6.886 1.00 0.34 N ATOM 207 N LYS 13 4.645 2.430 5.771 1.00 0.20 N ATOM 208 CA LYS 13 5.492 3.145 6.713 1.00 0.20 C ATOM 209 C LYS 13 6.477 4.031 5.952 1.00 0.20 C ATOM 210 O LYS 13 6.767 5.154 6.373 1.00 0.20 O ATOM 211 CB LYS 13 6.241 2.164 7.615 1.00 0.20 C ATOM 212 CG LYS 13 5.363 1.433 8.622 1.00 0.20 C ATOM 213 CD LYS 13 6.178 0.452 9.450 1.00 0.20 C ATOM 214 CE LYS 13 5.305 -0.289 10.453 1.00 0.20 C ATOM 215 NZ LYS 13 6.092 -1.266 11.257 1.00 0.20 N ATOM 229 N LYS 14 6.969 3.530 4.816 1.00 0.09 N ATOM 230 CA LYS 14 7.867 4.298 3.960 1.00 0.09 C ATOM 231 C LYS 14 7.118 5.464 3.291 1.00 0.09 C ATOM 232 O LYS 14 7.626 6.587 3.240 1.00 0.09 O ATOM 233 CB LYS 14 8.503 3.372 2.921 1.00 0.09 C ATOM 234 CG LYS 14 9.487 2.384 3.534 1.00 0.09 C ATOM 235 CD LYS 14 10.065 1.427 2.506 1.00 0.09 C ATOM 236 CE LYS 14 11.021 0.448 3.173 1.00 0.09 C ATOM 237 NZ LYS 14 11.572 -0.547 2.215 1.00 0.09 N ATOM 251 N PHE 15 5.892 5.209 2.819 1.00 0.53 N ATOM 252 CA PHE 15 5.042 6.247 2.227 1.00 0.53 C ATOM 253 C PHE 15 4.383 7.096 3.322 1.00 0.53 C ATOM 254 O PHE 15 3.171 7.007 3.539 1.00 0.53 O ATOM 255 CB PHE 15 3.937 5.652 1.336 1.00 0.53 C ATOM 256 CG PHE 15 4.357 4.989 0.048 1.00 0.53 C ATOM 257 CD1 PHE 15 4.189 3.625 -0.147 1.00 0.53 C ATOM 258 CD2 PHE 15 4.900 5.739 -0.985 1.00 0.53 C ATOM 259 CE1 PHE 15 4.555 3.029 -1.339 1.00 0.53 C ATOM 260 CE2 PHE 15 5.266 5.144 -2.180 1.00 0.53 C ATOM 261 CZ PHE 15 5.093 3.786 -2.356 1.00 0.53 C ATOM 271 N LYS 16 5.194 7.907 3.996 1.00 0.59 N ATOM 272 CA LYS 16 4.749 8.727 5.118 1.00 0.59 C ATOM 273 C LYS 16 3.533 9.582 4.790 1.00 0.59 C ATOM 274 O LYS 16 3.560 10.407 3.875 1.00 0.59 O ATOM 275 CB LYS 16 5.895 9.622 5.588 1.00 0.59 C ATOM 276 CG LYS 16 5.581 10.458 6.821 1.00 0.59 C ATOM 277 CD LYS 16 6.795 11.263 7.263 1.00 0.59 C ATOM 278 CE LYS 16 6.499 12.079 8.513 1.00 0.59 C ATOM 279 NZ LYS 16 7.688 12.857 8.960 1.00 0.59 N ATOM 293 N ASN 17 2.476 9.376 5.576 1.00 0.23 N ATOM 294 CA ASN 17 1.195 10.075 5.464 1.00 0.23 C ATOM 295 C ASN 17 0.462 9.821 4.146 1.00 0.23 C ATOM 296 O ASN 17 -0.263 10.693 3.663 1.00 0.23 O ATOM 297 CB ASN 17 1.378 11.571 5.672 1.00 0.23 C ATOM 298 CG ASN 17 1.864 11.914 7.053 1.00 0.23 C ATOM 299 OD1 ASN 17 1.517 11.245 8.033 1.00 0.23 O ATOM 300 ND2 ASN 17 2.654 12.952 7.150 1.00 0.23 N ATOM 307 N CYS 18 0.611 8.621 3.586 1.00 0.00 N ATOM 308 CA CYS 18 -0.088 8.271 2.352 1.00 0.00 C ATOM 309 C CYS 18 -1.133 7.185 2.560 1.00 0.00 C ATOM 310 O CYS 18 -1.109 6.454 3.552 1.00 0.00 O ATOM 311 CB CYS 18 0.888 7.778 1.297 1.00 0.00 C ATOM 312 SG CYS 18 2.126 8.992 0.800 1.00 0.00 S ATOM 318 N GLU 19 -2.045 7.086 1.601 1.00 0.00 N ATOM 319 CA GLU 19 -3.089 6.073 1.605 1.00 0.00 C ATOM 320 C GLU 19 -2.588 4.818 0.917 1.00 0.00 C ATOM 321 O GLU 19 -2.126 4.890 -0.213 1.00 0.00 O ATOM 322 CB GLU 19 -4.333 6.586 0.876 1.00 0.00 C ATOM 323 CG GLU 19 -5.492 5.604 0.825 1.00 0.00 C ATOM 324 CD GLU 19 -6.670 6.121 0.039 1.00 0.00 C ATOM 325 OE1 GLU 19 -6.707 7.291 -0.272 1.00 0.00 O ATOM 326 OE2 GLU 19 -7.530 5.328 -0.272 1.00 0.00 O ATOM 333 N VAL 20 -2.665 3.673 1.588 1.00 0.00 N ATOM 334 CA VAL 20 -2.237 2.411 0.973 1.00 0.00 C ATOM 335 C VAL 20 -3.331 1.357 1.097 1.00 0.00 C ATOM 336 O VAL 20 -3.591 0.848 2.189 1.00 0.00 O ATOM 337 CB VAL 20 -0.924 1.901 1.614 1.00 0.00 C ATOM 338 CG1 VAL 20 -0.500 0.588 0.971 1.00 0.00 C ATOM 339 CG2 VAL 20 0.175 2.944 1.437 1.00 0.00 C ATOM 349 N ARG 21 -3.966 1.024 -0.027 1.00 0.00 N ATOM 350 CA ARG 21 -5.024 0.014 -0.039 1.00 0.00 C ATOM 351 C ARG 21 -4.823 -0.991 -1.162 1.00 0.00 C ATOM 352 O ARG 21 -4.639 -0.625 -2.323 1.00 0.00 O ATOM 353 CB ARG 21 -6.405 0.652 -0.148 1.00 0.00 C ATOM 354 CG ARG 21 -6.884 1.343 1.126 1.00 0.00 C ATOM 355 CD ARG 21 -8.324 1.714 1.058 1.00 0.00 C ATOM 356 NE ARG 21 -8.582 2.837 0.173 1.00 0.00 N ATOM 357 CZ ARG 21 -9.734 3.049 -0.491 1.00 0.00 C ATOM 358 NH1 ARG 21 -10.723 2.187 -0.409 1.00 0.00 N ATOM 359 NH2 ARG 21 -9.851 4.139 -1.224 1.00 0.00 N ATOM 373 N CYS 22 -4.855 -2.267 -0.800 1.00 0.00 N ATOM 374 CA CYS 22 -4.594 -3.343 -1.740 1.00 0.00 C ATOM 375 C CYS 22 -5.824 -3.918 -2.404 1.00 0.00 C ATOM 376 O CYS 22 -6.667 -4.535 -1.751 1.00 0.00 O ATOM 377 CB CYS 22 -3.875 -4.490 -1.032 1.00 0.00 C ATOM 378 SG CYS 22 -3.484 -5.887 -2.113 1.00 0.00 S ATOM 384 N ASP 23 -5.910 -3.765 -3.721 1.00 0.00 N ATOM 385 CA ASP 23 -7.000 -4.383 -4.450 1.00 0.00 C ATOM 386 C ASP 23 -6.667 -5.832 -4.690 1.00 0.00 C ATOM 387 O ASP 23 -6.160 -6.190 -5.750 1.00 0.00 O ATOM 388 CB ASP 23 -7.266 -3.696 -5.784 1.00 0.00 C ATOM 389 CG ASP 23 -8.450 -4.313 -6.504 1.00 0.00 C ATOM 390 OD1 ASP 23 -8.924 -5.330 -6.049 1.00 0.00 O ATOM 391 OD2 ASP 23 -8.861 -3.781 -7.508 1.00 0.00 O ATOM 396 N GLU 24 -6.978 -6.661 -3.702 1.00 0.53 N ATOM 397 CA GLU 24 -6.671 -8.084 -3.724 1.00 0.53 C ATOM 398 C GLU 24 -7.428 -8.847 -4.808 1.00 0.53 C ATOM 399 O GLU 24 -6.991 -9.919 -5.227 1.00 0.53 O ATOM 400 CB GLU 24 -6.946 -8.677 -2.340 1.00 0.53 C ATOM 401 CG GLU 24 -5.978 -8.154 -1.287 1.00 0.53 C ATOM 402 CD GLU 24 -6.190 -8.678 0.106 1.00 0.53 C ATOM 403 OE1 GLU 24 -7.136 -9.389 0.348 1.00 0.53 O ATOM 404 OE2 GLU 24 -5.384 -8.357 0.947 1.00 0.53 O ATOM 411 N SER 25 -8.555 -8.301 -5.270 1.00 0.84 N ATOM 412 CA SER 25 -9.311 -8.945 -6.334 1.00 0.84 C ATOM 413 C SER 25 -8.617 -8.776 -7.690 1.00 0.84 C ATOM 414 O SER 25 -8.869 -9.552 -8.615 1.00 0.84 O ATOM 415 CB SER 25 -10.717 -8.379 -6.411 1.00 0.84 C ATOM 416 OG SER 25 -10.721 -7.065 -6.900 1.00 0.84 O ATOM 422 N ASN 26 -7.743 -7.771 -7.808 1.00 0.55 N ATOM 423 CA ASN 26 -7.007 -7.544 -9.044 1.00 0.55 C ATOM 424 C ASN 26 -5.495 -7.557 -8.823 1.00 0.55 C ATOM 425 O ASN 26 -4.730 -7.419 -9.778 1.00 0.55 O ATOM 426 CB ASN 26 -7.439 -6.243 -9.690 1.00 0.55 C ATOM 427 CG ASN 26 -8.857 -6.294 -10.198 1.00 0.55 C ATOM 428 OD1 ASN 26 -9.171 -7.089 -11.092 1.00 0.55 O ATOM 429 ND2 ASN 26 -9.715 -5.468 -9.654 1.00 0.55 N ATOM 436 N HIS 27 -5.071 -7.748 -7.569 1.00 0.00 N ATOM 437 CA HIS 27 -3.660 -7.824 -7.200 1.00 0.00 C ATOM 438 C HIS 27 -2.903 -6.538 -7.531 1.00 0.00 C ATOM 439 O HIS 27 -1.815 -6.576 -8.110 1.00 0.00 O ATOM 440 CB HIS 27 -3.009 -9.027 -7.879 1.00 0.00 C ATOM 441 CG HIS 27 -3.702 -10.308 -7.537 1.00 0.00 C ATOM 442 ND1 HIS 27 -3.654 -10.865 -6.278 1.00 0.00 N ATOM 443 CD2 HIS 27 -4.472 -11.135 -8.285 1.00 0.00 C ATOM 444 CE1 HIS 27 -4.362 -11.981 -6.265 1.00 0.00 C ATOM 445 NE2 HIS 27 -4.868 -12.167 -7.470 1.00 0.00 N ATOM 453 N CYS 28 -3.482 -5.401 -7.150 1.00 0.00 N ATOM 454 CA CYS 28 -2.877 -4.097 -7.418 1.00 0.00 C ATOM 455 C CYS 28 -3.069 -3.140 -6.249 1.00 0.00 C ATOM 456 O CYS 28 -4.199 -2.827 -5.878 1.00 0.00 O ATOM 457 CB CYS 28 -3.482 -3.479 -8.675 1.00 0.00 C ATOM 458 SG CYS 28 -2.769 -1.878 -9.126 1.00 0.00 S ATOM 464 N VAL 29 -1.971 -2.672 -5.666 1.00 0.00 N ATOM 465 CA VAL 29 -2.078 -1.779 -4.528 1.00 0.00 C ATOM 466 C VAL 29 -2.093 -0.331 -4.967 1.00 0.00 C ATOM 467 O VAL 29 -1.223 0.128 -5.714 1.00 0.00 O ATOM 468 CB VAL 29 -0.925 -1.995 -3.549 1.00 0.00 C ATOM 469 CG1 VAL 29 -1.052 -1.035 -2.376 1.00 0.00 C ATOM 470 CG2 VAL 29 -0.899 -3.436 -3.105 1.00 0.00 C ATOM 480 N GLU 30 -3.099 0.388 -4.503 1.00 0.00 N ATOM 481 CA GLU 30 -3.245 1.790 -4.824 1.00 0.00 C ATOM 482 C GLU 30 -2.652 2.631 -3.711 1.00 0.00 C ATOM 483 O GLU 30 -3.100 2.573 -2.563 1.00 0.00 O ATOM 484 CB GLU 30 -4.719 2.131 -5.040 1.00 0.00 C ATOM 485 CG GLU 30 -5.001 3.575 -5.429 1.00 0.00 C ATOM 486 CD GLU 30 -6.467 3.817 -5.675 1.00 0.00 C ATOM 487 OE1 GLU 30 -7.222 2.881 -5.588 1.00 0.00 O ATOM 488 OE2 GLU 30 -6.833 4.934 -5.952 1.00 0.00 O ATOM 495 N VAL 31 -1.629 3.408 -4.052 1.00 0.00 N ATOM 496 CA VAL 31 -0.973 4.264 -3.083 1.00 0.00 C ATOM 497 C VAL 31 -1.198 5.724 -3.433 1.00 0.00 C ATOM 498 O VAL 31 -1.019 6.117 -4.578 1.00 0.00 O ATOM 499 CB VAL 31 0.530 3.970 -3.015 1.00 0.00 C ATOM 500 CG1 VAL 31 1.191 4.932 -2.042 1.00 0.00 C ATOM 501 CG2 VAL 31 0.758 2.525 -2.596 1.00 0.00 C ATOM 511 N ARG 32 -1.595 6.540 -2.464 1.00 0.00 N ATOM 512 CA ARG 32 -1.851 7.940 -2.778 1.00 0.00 C ATOM 513 C ARG 32 -1.212 8.951 -1.838 1.00 0.00 C ATOM 514 O ARG 32 -1.406 8.915 -0.621 1.00 0.00 O ATOM 515 CB ARG 32 -3.332 8.223 -2.783 1.00 0.00 C ATOM 516 CG ARG 32 -3.679 9.660 -3.115 1.00 0.00 C ATOM 517 CD ARG 32 -5.139 9.865 -3.119 1.00 0.00 C ATOM 518 NE ARG 32 -5.693 9.602 -1.802 1.00 0.00 N ATOM 519 CZ ARG 32 -5.760 10.493 -0.797 1.00 0.00 C ATOM 520 NH1 ARG 32 -5.311 11.722 -0.945 1.00 0.00 N ATOM 521 NH2 ARG 32 -6.284 10.100 0.349 1.00 0.00 N ATOM 535 N CYS 33 -0.481 9.885 -2.431 1.00 0.00 N ATOM 536 CA CYS 33 0.125 10.994 -1.718 1.00 0.00 C ATOM 537 C CYS 33 -0.532 12.262 -2.217 1.00 0.00 C ATOM 538 O CYS 33 -0.278 12.678 -3.346 1.00 0.00 O ATOM 539 CB CYS 33 1.627 11.073 -1.976 1.00 0.00 C ATOM 540 SG CYS 33 2.458 12.405 -1.076 1.00 0.00 S ATOM 546 N SER 34 -1.353 12.890 -1.380 1.00 0.00 N ATOM 547 CA SER 34 -2.086 14.076 -1.813 1.00 0.00 C ATOM 548 C SER 34 -2.860 13.750 -3.107 1.00 0.00 C ATOM 549 O SER 34 -3.769 12.918 -3.087 1.00 0.00 O ATOM 550 CB SER 34 -1.130 15.249 -1.985 1.00 0.00 C ATOM 551 OG SER 34 -1.826 16.462 -2.108 1.00 0.00 O ATOM 557 N ASP 35 -2.531 14.415 -4.219 1.00 0.00 N ATOM 558 CA ASP 35 -3.226 14.167 -5.482 1.00 0.00 C ATOM 559 C ASP 35 -2.470 13.232 -6.444 1.00 0.00 C ATOM 560 O ASP 35 -2.899 13.044 -7.583 1.00 0.00 O ATOM 561 CB ASP 35 -3.510 15.493 -6.185 1.00 0.00 C ATOM 562 CG ASP 35 -4.492 16.364 -5.413 1.00 0.00 C ATOM 563 OD1 ASP 35 -5.306 15.822 -4.706 1.00 0.00 O ATOM 564 OD2 ASP 35 -4.416 17.563 -5.540 1.00 0.00 O ATOM 569 N THR 36 -1.349 12.657 -5.998 1.00 0.33 N ATOM 570 CA THR 36 -0.551 11.767 -6.846 1.00 0.33 C ATOM 571 C THR 36 -0.672 10.307 -6.427 1.00 0.33 C ATOM 572 O THR 36 -0.470 9.959 -5.265 1.00 0.33 O ATOM 573 CB THR 36 0.939 12.164 -6.825 1.00 0.33 C ATOM 574 OG1 THR 36 1.092 13.495 -7.339 1.00 0.33 O ATOM 575 CG2 THR 36 1.758 11.197 -7.670 1.00 0.33 C ATOM 583 N LYS 37 -0.990 9.443 -7.383 1.00 0.32 N ATOM 584 CA LYS 37 -1.127 8.033 -7.065 1.00 0.32 C ATOM 585 C LYS 37 0.011 7.199 -7.632 1.00 0.32 C ATOM 586 O LYS 37 0.624 7.559 -8.638 1.00 0.32 O ATOM 587 CB LYS 37 -2.464 7.499 -7.558 1.00 0.32 C ATOM 588 CG LYS 37 -3.671 8.122 -6.872 1.00 0.32 C ATOM 589 CD LYS 37 -4.958 7.462 -7.330 1.00 0.32 C ATOM 590 CE LYS 37 -6.177 8.092 -6.677 1.00 0.32 C ATOM 591 NZ LYS 37 -7.426 7.382 -7.059 1.00 0.32 N ATOM 605 N TYR 38 0.285 6.079 -6.967 1.00 0.46 N ATOM 606 CA TYR 38 1.360 5.183 -7.349 1.00 0.46 C ATOM 607 C TYR 38 0.853 3.747 -7.446 1.00 0.46 C ATOM 608 O TYR 38 -0.045 3.336 -6.704 1.00 0.46 O ATOM 609 CB TYR 38 2.487 5.240 -6.314 1.00 0.46 C ATOM 610 CG TYR 38 3.032 6.621 -6.054 1.00 0.46 C ATOM 611 CD1 TYR 38 2.469 7.393 -5.045 1.00 0.46 C ATOM 612 CD2 TYR 38 4.085 7.116 -6.805 1.00 0.46 C ATOM 613 CE1 TYR 38 2.961 8.654 -4.787 1.00 0.46 C ATOM 614 CE2 TYR 38 4.577 8.379 -6.546 1.00 0.46 C ATOM 615 CZ TYR 38 4.022 9.145 -5.541 1.00 0.46 C ATOM 616 OH TYR 38 4.523 10.401 -5.285 1.00 0.46 O ATOM 626 N THR 39 1.447 2.977 -8.351 1.00 0.87 N ATOM 627 CA THR 39 1.100 1.569 -8.491 1.00 0.87 C ATOM 628 C THR 39 2.105 0.721 -7.729 1.00 0.87 C ATOM 629 O THR 39 3.296 0.729 -8.043 1.00 0.87 O ATOM 630 CB THR 39 1.075 1.129 -9.966 1.00 0.87 C ATOM 631 OG1 THR 39 0.083 1.882 -10.676 1.00 0.87 O ATOM 632 CG2 THR 39 0.755 -0.355 -10.066 1.00 0.87 C ATOM 640 N LEU 40 1.627 -0.008 -6.729 1.00 1.00 N ATOM 641 CA LEU 40 2.502 -0.847 -5.927 1.00 1.00 C ATOM 642 C LEU 40 2.149 -2.326 -6.104 1.00 1.00 C ATOM 643 O LEU 40 0.998 -2.735 -5.945 1.00 1.00 O ATOM 644 CB LEU 40 2.426 -0.410 -4.451 1.00 1.00 C ATOM 645 CG LEU 40 3.234 -1.241 -3.444 1.00 1.00 C ATOM 646 CD1 LEU 40 4.718 -1.077 -3.738 1.00 1.00 C ATOM 647 CD2 LEU 40 2.910 -0.780 -2.027 1.00 1.00 C ATOM 659 N CYS 41 3.146 -3.122 -6.478 1.00 1.24 N ATOM 660 CA CYS 41 2.946 -4.552 -6.688 1.00 1.24 C ATOM 661 C CYS 41 4.280 -5.281 -6.819 1.00 1.24 C ATOM 662 O CYS 41 4.523 -6.269 -6.126 1.00 1.24 O ATOM 663 OXT CYS 41 5.073 -4.940 -7.696 1.00 1.24 O ATOM 664 CB CYS 41 2.106 -4.807 -7.944 1.00 1.24 C ATOM 665 SG CYS 41 1.718 -6.552 -8.226 1.00 1.24 S TER END