####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 41 ( 334), selected 41 , name T0955TS041_1 # Molecule2: number of CA atoms 41 ( 665), selected 41 , name T0955.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS041_1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 35 5 - 39 5.00 6.71 LCS_AVERAGE: 84.65 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 20 1 - 20 1.64 9.18 LONGEST_CONTINUOUS_SEGMENT: 20 2 - 21 1.95 9.47 LCS_AVERAGE: 43.37 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 16 2 - 17 0.91 8.98 LCS_AVERAGE: 26.12 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 41 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 1 S 1 3 20 33 3 3 4 7 17 19 20 21 22 24 24 25 28 29 31 31 34 36 38 39 LCS_GDT Q 2 Q 2 16 20 33 8 11 16 17 18 19 20 20 22 24 24 25 27 29 32 34 36 37 38 39 LCS_GDT E 3 E 3 16 20 33 8 12 16 17 18 19 20 21 22 24 24 26 28 31 33 35 36 37 38 39 LCS_GDT T 4 T 4 16 20 33 8 12 16 17 18 19 20 21 22 24 24 26 28 32 33 35 36 37 38 39 LCS_GDT R 5 R 5 16 20 35 8 11 16 17 18 19 20 20 22 24 24 26 29 32 33 35 36 37 38 39 LCS_GDT K 6 K 6 16 20 35 8 12 16 17 18 19 20 21 22 24 24 26 29 32 33 35 36 37 38 39 LCS_GDT K 7 K 7 16 20 35 8 12 16 17 18 19 20 21 22 24 24 27 29 32 33 35 36 37 38 39 LCS_GDT C 8 C 8 16 20 35 8 12 16 17 18 19 20 21 22 24 26 28 29 32 33 35 36 37 38 39 LCS_GDT T 9 T 9 16 20 35 8 12 16 17 18 19 20 21 22 24 26 28 29 32 33 35 36 37 38 39 LCS_GDT E 10 E 10 16 20 35 8 12 16 17 18 19 20 21 22 24 26 28 29 32 33 35 36 37 38 39 LCS_GDT M 11 M 11 16 20 35 8 12 16 17 18 19 20 21 22 24 26 28 29 32 33 35 36 37 38 39 LCS_GDT K 12 K 12 16 20 35 8 11 16 17 18 19 20 21 22 24 26 28 29 32 33 35 36 37 38 39 LCS_GDT K 13 K 13 16 20 35 8 11 16 17 18 19 20 21 22 24 26 28 29 32 33 35 36 37 38 39 LCS_GDT K 14 K 14 16 20 35 8 12 16 17 18 19 20 21 22 24 26 28 29 32 33 35 36 37 38 39 LCS_GDT F 15 F 15 16 20 35 5 12 16 17 18 19 20 21 22 24 26 28 29 32 33 35 36 37 38 39 LCS_GDT K 16 K 16 16 20 35 5 12 16 17 18 19 20 21 22 24 26 28 29 32 33 35 36 37 38 39 LCS_GDT N 17 N 17 16 20 35 4 12 16 17 18 19 20 21 22 24 25 28 29 32 33 35 36 37 38 39 LCS_GDT C 18 C 18 14 20 35 5 9 14 16 18 19 20 21 22 24 25 28 29 32 33 35 36 37 38 39 LCS_GDT E 19 E 19 13 20 35 4 8 14 16 18 19 20 21 22 24 24 26 29 32 33 35 36 37 38 39 LCS_GDT V 20 V 20 11 20 35 3 8 12 16 18 19 20 21 22 24 26 28 29 32 33 35 36 37 38 39 LCS_GDT R 21 R 21 9 20 35 3 8 12 14 15 18 19 21 22 24 24 26 29 31 33 34 36 37 38 39 LCS_GDT C 22 C 22 9 19 35 3 8 12 14 15 18 19 21 22 24 26 28 29 32 33 35 36 37 38 39 LCS_GDT D 23 D 23 7 19 35 3 5 12 14 15 18 19 20 22 24 26 28 29 32 33 35 36 37 38 39 LCS_GDT E 24 E 24 4 19 35 3 6 12 13 15 17 19 21 22 24 26 28 29 32 33 35 36 37 38 39 LCS_GDT S 25 S 25 4 16 35 3 7 9 12 15 17 19 20 22 24 26 28 29 32 33 35 36 37 38 39 LCS_GDT N 26 N 26 4 16 35 3 6 9 12 15 17 19 20 22 24 26 28 29 32 33 35 36 37 38 39 LCS_GDT H 27 H 27 8 16 35 3 8 9 12 15 17 19 20 22 24 26 28 29 31 33 35 36 37 38 39 LCS_GDT C 28 C 28 8 16 35 4 8 9 12 15 17 19 20 22 24 26 28 29 32 33 35 36 37 38 39 LCS_GDT V 29 V 29 8 16 35 4 8 8 11 15 17 19 20 22 24 26 28 29 32 33 35 36 37 38 39 LCS_GDT E 30 E 30 8 16 35 4 8 9 12 15 17 19 20 22 24 26 28 29 32 33 35 36 37 38 39 LCS_GDT V 31 V 31 8 16 35 4 8 8 17 17 19 19 20 22 24 26 28 29 32 33 35 36 37 38 39 LCS_GDT R 32 R 32 8 16 35 4 8 9 12 15 17 19 20 22 24 26 28 29 32 33 35 36 37 38 39 LCS_GDT C 33 C 33 8 16 35 4 8 8 11 15 17 19 20 22 24 26 28 29 32 33 35 36 37 38 39 LCS_GDT S 34 S 34 8 16 35 4 8 9 12 15 17 19 20 22 24 26 28 29 32 33 35 36 37 38 39 LCS_GDT D 35 D 35 6 16 35 3 6 9 12 15 17 19 20 22 24 25 28 29 31 33 35 36 37 38 39 LCS_GDT T 36 T 36 6 16 35 3 5 8 12 15 17 19 20 22 24 26 28 29 32 33 35 36 37 38 39 LCS_GDT K 37 K 37 6 16 35 3 5 7 11 14 17 19 20 22 24 26 28 29 32 33 35 36 37 38 39 LCS_GDT Y 38 Y 38 6 14 35 3 5 7 10 14 16 19 20 22 24 26 28 29 32 33 35 36 37 38 39 LCS_GDT T 39 T 39 6 10 35 3 5 6 8 10 12 13 15 16 17 25 28 28 31 33 35 36 37 38 39 LCS_GDT L 40 L 40 6 10 34 3 5 6 8 10 12 13 14 15 16 19 21 23 27 30 32 33 33 34 36 LCS_GDT C 41 C 41 5 10 32 3 5 6 8 8 12 13 14 14 15 17 19 21 21 24 28 28 31 32 33 LCS_AVERAGE LCS_A: 51.38 ( 26.12 43.37 84.65 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 8 12 16 17 18 19 20 21 22 24 26 28 29 32 33 35 36 37 38 39 GDT PERCENT_AT 19.51 29.27 39.02 41.46 43.90 46.34 48.78 51.22 53.66 58.54 63.41 68.29 70.73 78.05 80.49 85.37 87.80 90.24 92.68 95.12 GDT RMS_LOCAL 0.36 0.70 0.91 1.03 1.33 1.40 1.64 2.35 2.11 2.74 3.70 3.89 4.11 4.71 4.66 5.04 5.16 5.33 5.52 5.73 GDT RMS_ALL_AT 9.96 8.73 8.98 8.96 9.03 8.87 9.18 9.55 8.77 9.69 7.21 7.34 7.26 6.57 7.09 6.60 6.62 6.54 6.52 6.56 # Checking swapping # possible swapping detected: E 10 E 10 # possible swapping detected: E 24 E 24 # possible swapping detected: E 30 E 30 # possible swapping detected: D 35 D 35 # possible swapping detected: Y 38 Y 38 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA S 1 S 1 4.156 0 0.067 0.106 6.206 10.455 14.545 3.311 LGA Q 2 Q 2 5.254 0 0.232 1.182 11.451 5.909 2.626 11.451 LGA E 3 E 3 1.532 0 0.049 1.220 4.827 48.636 37.172 2.603 LGA T 4 T 4 3.306 0 0.015 1.300 6.179 20.455 15.844 6.179 LGA R 5 R 5 4.285 0 0.039 0.790 11.996 13.182 4.793 11.996 LGA K 6 K 6 2.743 0 0.031 1.322 4.581 35.909 26.061 4.417 LGA K 7 K 7 0.749 0 0.059 1.088 7.922 77.727 43.636 7.922 LGA C 8 C 8 1.794 0 0.055 0.689 5.541 54.545 40.909 5.541 LGA T 9 T 9 2.029 0 0.016 0.913 4.617 47.727 36.883 4.617 LGA E 10 E 10 1.460 0 0.025 0.790 1.892 61.818 60.606 1.317 LGA M 11 M 11 1.233 0 0.099 1.016 6.879 73.636 49.545 6.879 LGA K 12 K 12 0.610 0 0.035 0.932 5.261 86.364 51.717 5.261 LGA K 13 K 13 0.823 0 0.051 0.296 2.542 73.636 66.869 2.542 LGA K 14 K 14 1.441 0 0.065 0.095 3.017 65.455 47.071 3.017 LGA F 15 F 15 1.050 0 0.449 0.889 6.310 60.000 30.413 5.677 LGA K 16 K 16 1.212 0 0.240 1.340 6.982 63.636 41.616 6.982 LGA N 17 N 17 2.400 0 0.020 1.119 4.633 33.636 25.000 2.707 LGA C 18 C 18 2.350 0 0.017 0.722 2.905 52.273 45.758 2.167 LGA E 19 E 19 1.070 0 0.253 0.598 2.128 62.273 54.545 2.128 LGA V 20 V 20 1.227 0 0.160 0.384 2.634 53.182 54.545 2.231 LGA R 21 R 21 3.255 0 0.030 0.639 7.773 23.182 10.579 7.773 LGA C 22 C 22 4.266 0 0.020 0.125 4.515 5.455 4.848 4.515 LGA D 23 D 23 4.627 0 0.355 0.411 5.701 1.364 2.500 4.641 LGA E 24 E 24 4.274 0 0.179 0.797 5.923 2.727 5.253 4.520 LGA S 25 S 25 6.273 0 0.611 0.780 9.967 0.000 0.000 5.525 LGA N 26 N 26 11.103 0 0.589 1.268 13.310 0.000 0.000 13.310 LGA H 27 H 27 13.774 0 0.494 1.215 19.826 0.000 0.000 19.826 LGA C 28 C 28 11.529 0 0.046 0.777 15.231 0.000 0.000 15.231 LGA V 29 V 29 9.151 0 0.142 0.283 9.942 0.000 0.000 9.212 LGA E 30 E 30 8.399 0 0.063 0.783 11.004 0.000 0.000 9.291 LGA V 31 V 31 8.029 0 0.017 0.145 9.075 0.000 0.000 8.938 LGA R 32 R 32 10.701 0 0.236 0.598 13.878 0.000 0.000 12.403 LGA C 33 C 33 12.512 0 0.193 0.918 14.683 0.000 0.000 12.260 LGA S 34 S 34 16.040 0 0.497 0.537 17.531 0.000 0.000 14.293 LGA D 35 D 35 21.004 0 0.136 1.092 24.231 0.000 0.000 24.231 LGA T 36 T 36 18.287 0 0.637 1.412 18.620 0.000 0.000 17.599 LGA K 37 K 37 14.661 0 0.269 1.249 20.908 0.000 0.000 20.908 LGA Y 38 Y 38 14.470 0 0.082 1.369 16.289 0.000 0.000 16.046 LGA T 39 T 39 14.370 0 0.154 0.265 17.753 0.000 0.000 11.647 LGA L 40 L 40 19.558 0 0.163 0.644 22.595 0.000 0.000 19.703 LGA C 41 C 41 23.101 1 0.243 0.904 26.153 0.000 0.000 21.701 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 41 164 164 100.00 335 334 99.70 41 41 SUMMARY(RMSD_GDC): 6.476 6.497 7.173 25.200 18.862 7.583 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 41 41 4.0 21 2.35 51.829 50.080 0.856 LGA_LOCAL RMSD: 2.353 Number of atoms: 21 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 9.549 Number of assigned atoms: 41 Std_ASGN_ATOMS RMSD: 6.476 Standard rmsd on all 41 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.874210 * X + -0.441959 * Y + -0.201070 * Z + -1.972604 Y_new = 0.477022 * X + -0.859018 * Y + -0.185842 * Z + 0.968887 Z_new = -0.090588 * X + -0.258380 * Y + 0.961787 * Z + 2.378311 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 2.642087 0.090713 -0.262449 [DEG: 151.3804 5.1975 -15.0372 ] ZXZ: -0.824736 0.277342 -2.804382 [DEG: -47.2539 15.8905 -160.6792 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0955TS041_1 REMARK 2: T0955.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS041_1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 41 41 4.0 21 2.35 50.080 6.48 REMARK ---------------------------------------------------------- MOLECULE T0955TS041_1 PFRMAT TS TARGET T0955 MODEL 1 PARENT N/A ATOM 8 N SER 1 -0.855 -14.936 4.599 1.00 0.00 N ATOM 10 CA SER 1 0.229 -15.134 3.595 1.00 0.00 C ATOM 4 C SER 1 1.369 -14.130 3.813 1.00 0.00 C ATOM 5 O SER 1 1.127 -13.009 4.276 1.00 0.00 O ATOM 1 CB SER 1 -0.330 -14.990 2.176 1.00 0.00 C ATOM 2 OG SER 1 -1.346 -15.946 1.926 1.00 0.00 O ATOM 11 N GLN 2 2.599 -14.547 3.478 1.00 0.00 N ATOM 13 CA GLN 2 3.832 -13.738 3.609 1.00 0.00 C ATOM 21 C GLN 2 3.938 -12.526 2.658 1.00 0.00 C ATOM 22 O GLN 2 4.401 -11.456 3.067 1.00 0.00 O ATOM 14 CB GLN 2 5.094 -14.628 3.517 1.00 0.00 C ATOM 15 CG GLN 2 5.159 -15.639 2.351 1.00 0.00 C ATOM 16 CD GLN 2 6.436 -16.456 2.358 1.00 0.00 C ATOM 17 OE1 GLN 2 7.425 -16.088 1.723 1.00 0.00 O ATOM 18 NE2 GLN 2 6.422 -17.572 3.078 1.00 0.00 N ATOM 23 N GLU 3 3.477 -12.710 1.411 1.00 0.00 N ATOM 25 CA GLU 3 3.489 -11.675 0.353 1.00 0.00 C ATOM 31 C GLU 3 2.530 -10.511 0.658 1.00 0.00 C ATOM 32 O GLU 3 2.873 -9.348 0.412 1.00 0.00 O ATOM 26 CB GLU 3 3.146 -12.289 -1.012 1.00 0.00 C ATOM 27 CG GLU 3 4.210 -13.227 -1.578 1.00 0.00 C ATOM 28 CD GLU 3 3.824 -13.805 -2.926 1.00 0.00 C ATOM 29 OE1 GLU 3 4.155 -13.184 -3.959 1.00 0.00 O ATOM 30 OE2 GLU 3 3.193 -14.883 -2.955 1.00 0.00 O ATOM 33 N THR 4 1.358 -10.841 1.224 1.00 0.00 N ATOM 35 CA THR 4 0.307 -9.873 1.607 1.00 0.00 C ATOM 40 C THR 4 0.784 -9.000 2.793 1.00 0.00 C ATOM 41 O THR 4 0.568 -7.779 2.795 1.00 0.00 O ATOM 36 CB THR 4 -1.032 -10.598 1.967 1.00 0.00 C ATOM 37 OG1 THR 4 -1.097 -11.850 1.273 1.00 0.00 O ATOM 39 CG2 THR 4 -2.246 -9.754 1.548 1.00 0.00 C ATOM 42 N ARG 5 1.471 -9.640 3.754 1.00 0.00 N ATOM 44 CA ARG 5 2.027 -8.995 4.961 1.00 0.00 C ATOM 57 C ARG 5 3.185 -8.042 4.623 1.00 0.00 C ATOM 58 O ARG 5 3.244 -6.927 5.153 1.00 0.00 O ATOM 45 CB ARG 5 2.491 -10.046 5.979 1.00 0.00 C ATOM 46 CG ARG 5 1.361 -10.821 6.659 1.00 0.00 C ATOM 47 CD ARG 5 1.884 -11.850 7.659 1.00 0.00 C ATOM 48 NE ARG 5 2.566 -12.977 7.014 1.00 0.00 N ATOM 50 CZ ARG 5 3.113 -14.012 7.652 1.00 0.00 C ATOM 51 NH1 ARG 5 3.705 -14.972 6.954 1.00 0.00 N ATOM 54 NH2 ARG 5 3.079 -14.100 8.979 1.00 0.00 N ATOM 59 N LYS 6 4.054 -8.474 3.695 1.00 0.00 N ATOM 61 CA LYS 6 5.226 -7.704 3.229 1.00 0.00 C ATOM 70 C LYS 6 4.839 -6.446 2.435 1.00 0.00 C ATOM 71 O LYS 6 5.408 -5.373 2.675 1.00 0.00 O ATOM 62 CB LYS 6 6.166 -8.586 2.396 1.00 0.00 C ATOM 63 CG LYS 6 6.993 -9.573 3.209 1.00 0.00 C ATOM 64 CD LYS 6 7.899 -10.408 2.309 1.00 0.00 C ATOM 65 CE LYS 6 8.739 -11.406 3.104 1.00 0.00 C ATOM 66 NZ LYS 6 7.936 -12.507 3.719 1.00 0.00 N ATOM 72 N LYS 7 3.858 -6.576 1.526 1.00 0.00 N ATOM 74 CA LYS 7 3.375 -5.451 0.700 1.00 0.00 C ATOM 83 C LYS 7 2.623 -4.372 1.505 1.00 0.00 C ATOM 84 O LYS 7 2.865 -3.180 1.304 1.00 0.00 O ATOM 75 CB LYS 7 2.562 -5.932 -0.525 1.00 0.00 C ATOM 76 CG LYS 7 1.245 -6.682 -0.271 1.00 0.00 C ATOM 77 CD LYS 7 0.538 -6.998 -1.586 1.00 0.00 C ATOM 78 CE LYS 7 -0.823 -7.658 -1.374 1.00 0.00 C ATOM 79 NZ LYS 7 -1.841 -6.745 -0.771 1.00 0.00 N ATOM 85 N CYS 8 1.767 -4.805 2.447 1.00 0.00 N ATOM 87 CA CYS 8 0.979 -3.899 3.309 1.00 0.00 C ATOM 90 C CYS 8 1.880 -3.114 4.279 1.00 0.00 C ATOM 91 O CYS 8 1.647 -1.922 4.504 1.00 0.00 O ATOM 88 CB CYS 8 -0.105 -4.667 4.077 1.00 0.00 C ATOM 89 SG CYS 8 0.486 -5.857 5.305 1.00 0.00 S ATOM 92 N THR 9 2.922 -3.782 4.802 1.00 0.00 N ATOM 94 CA THR 9 3.907 -3.185 5.733 1.00 0.00 C ATOM 99 C THR 9 4.793 -2.124 5.049 1.00 0.00 C ATOM 100 O THR 9 5.006 -1.044 5.611 1.00 0.00 O ATOM 95 CB THR 9 4.799 -4.257 6.420 1.00 0.00 C ATOM 96 OG1 THR 9 5.286 -5.182 5.441 1.00 0.00 O ATOM 98 CG2 THR 9 4.018 -5.000 7.496 1.00 0.00 C ATOM 101 N GLU 10 5.247 -2.424 3.821 1.00 0.00 N ATOM 103 CA GLU 10 6.092 -1.526 3.004 1.00 0.00 C ATOM 109 C GLU 10 5.310 -0.282 2.551 1.00 0.00 C ATOM 110 O GLU 10 5.859 0.827 2.537 1.00 0.00 O ATOM 104 CB GLU 10 6.658 -2.264 1.784 1.00 0.00 C ATOM 105 CG GLU 10 7.769 -3.259 2.104 1.00 0.00 C ATOM 106 CD GLU 10 8.298 -3.964 0.868 1.00 0.00 C ATOM 107 OE1 GLU 10 9.255 -3.451 0.251 1.00 0.00 O ATOM 108 OE2 GLU 10 7.759 -5.035 0.514 1.00 0.00 O ATOM 111 N MET 11 4.021 -0.479 2.235 1.00 0.00 N ATOM 113 CA MET 11 3.097 0.585 1.790 1.00 0.00 C ATOM 117 C MET 11 2.781 1.601 2.903 1.00 0.00 C ATOM 118 O MET 11 2.856 2.814 2.662 1.00 0.00 O ATOM 119 CB MET 11 1.805 -0.026 1.232 1.00 0.00 C ATOM 114 CG MET 11 1.940 -0.606 -0.174 1.00 0.00 C ATOM 115 SD MET 11 0.470 -1.501 -0.719 1.00 0.00 S ATOM 116 CE MET 11 0.001 -0.554 -2.162 1.00 0.00 C ATOM 120 N LYS 12 2.467 1.103 4.111 1.00 0.00 N ATOM 122 CA LYS 12 2.168 1.955 5.280 1.00 0.00 C ATOM 131 C LYS 12 3.408 2.705 5.812 1.00 0.00 C ATOM 132 O LYS 12 3.306 3.872 6.201 1.00 0.00 O ATOM 123 CB LYS 12 1.425 1.191 6.402 1.00 0.00 C ATOM 124 CG LYS 12 2.092 -0.055 7.007 1.00 0.00 C ATOM 125 CD LYS 12 1.332 -0.515 8.247 1.00 0.00 C ATOM 126 CE LYS 12 1.876 -1.823 8.810 1.00 0.00 C ATOM 127 NZ LYS 12 1.468 -3.011 8.004 1.00 0.00 N ATOM 133 N LYS 13 4.570 2.035 5.777 1.00 0.00 N ATOM 135 CA LYS 13 5.862 2.594 6.227 1.00 0.00 C ATOM 144 C LYS 13 6.354 3.737 5.324 1.00 0.00 C ATOM 145 O LYS 13 6.922 4.712 5.824 1.00 0.00 O ATOM 136 CB LYS 13 6.933 1.500 6.324 1.00 0.00 C ATOM 137 CG LYS 13 6.838 0.641 7.579 1.00 0.00 C ATOM 138 CD LYS 13 7.932 -0.420 7.606 1.00 0.00 C ATOM 139 CE LYS 13 7.856 -1.296 8.855 1.00 0.00 C ATOM 140 NZ LYS 13 8.199 -0.570 10.115 1.00 0.00 N ATOM 146 N LYS 14 6.154 3.593 4.003 1.00 0.00 N ATOM 148 CA LYS 14 6.537 4.610 3.000 1.00 0.00 C ATOM 157 C LYS 14 5.660 5.880 3.043 1.00 0.00 C ATOM 158 O LYS 14 6.193 6.995 3.040 1.00 0.00 O ATOM 149 CB LYS 14 6.537 4.013 1.585 1.00 0.00 C ATOM 150 CG LYS 14 7.724 3.109 1.281 1.00 0.00 C ATOM 151 CD LYS 14 7.651 2.557 -0.139 1.00 0.00 C ATOM 152 CE LYS 14 8.833 1.647 -0.466 1.00 0.00 C ATOM 153 NZ LYS 14 8.821 0.358 0.289 1.00 0.00 N ATOM 159 N PHE 15 4.331 5.694 3.079 1.00 0.00 N ATOM 161 CA PHE 15 3.329 6.781 3.139 1.00 0.00 C ATOM 169 C PHE 15 3.217 7.545 4.473 1.00 0.00 C ATOM 170 O PHE 15 3.011 8.764 4.471 1.00 0.00 O ATOM 162 CB PHE 15 1.955 6.271 2.653 1.00 0.00 C ATOM 163 CG PHE 15 1.849 6.093 1.136 1.00 0.00 C ATOM 164 CD1 PHE 15 2.542 5.053 0.465 1.00 0.00 C ATOM 165 CD2 PHE 15 1.046 6.968 0.369 1.00 0.00 C ATOM 166 CE1 PHE 15 2.438 4.890 -0.944 1.00 0.00 C ATOM 167 CE2 PHE 15 0.931 6.817 -1.041 1.00 0.00 C ATOM 168 CZ PHE 15 1.629 5.775 -1.698 1.00 0.00 C ATOM 171 N LYS 16 3.369 6.819 5.594 1.00 0.00 N ATOM 173 CA LYS 16 3.310 7.324 6.997 1.00 0.00 C ATOM 182 C LYS 16 2.086 8.163 7.430 1.00 0.00 C ATOM 183 O LYS 16 1.282 7.696 8.245 1.00 0.00 O ATOM 174 CB LYS 16 4.615 8.042 7.410 1.00 0.00 C ATOM 175 CG LYS 16 5.819 7.132 7.595 1.00 0.00 C ATOM 176 CD LYS 16 7.041 7.922 8.052 1.00 0.00 C ATOM 177 CE LYS 16 8.268 7.034 8.239 1.00 0.00 C ATOM 178 NZ LYS 16 8.827 6.512 6.957 1.00 0.00 N ATOM 184 N ASN 17 1.954 9.382 6.882 1.00 0.00 N ATOM 186 CA ASN 17 0.856 10.316 7.199 1.00 0.00 C ATOM 193 C ASN 17 -0.266 10.301 6.148 1.00 0.00 C ATOM 194 O ASN 17 -1.425 10.592 6.472 1.00 0.00 O ATOM 187 CB ASN 17 1.401 11.746 7.360 1.00 0.00 C ATOM 188 CG ASN 17 2.327 11.898 8.561 1.00 0.00 C ATOM 189 OD1 ASN 17 3.543 11.725 8.450 1.00 0.00 O ATOM 190 ND2 ASN 17 1.756 12.240 9.713 1.00 0.00 N ATOM 195 N CYS 18 0.091 9.942 4.908 1.00 0.00 N ATOM 197 CA CYS 18 -0.836 9.873 3.765 1.00 0.00 C ATOM 200 C CYS 18 -1.372 8.453 3.513 1.00 0.00 C ATOM 201 O CYS 18 -0.768 7.475 3.972 1.00 0.00 O ATOM 198 CB CYS 18 -0.156 10.424 2.507 1.00 0.00 C ATOM 199 SG CYS 18 1.479 9.734 2.168 1.00 0.00 S ATOM 202 N GLU 19 -2.497 8.362 2.789 1.00 0.00 N ATOM 204 CA GLU 19 -3.170 7.091 2.456 1.00 0.00 C ATOM 210 C GLU 19 -2.585 6.329 1.250 1.00 0.00 C ATOM 211 O GLU 19 -2.118 6.951 0.288 1.00 0.00 O ATOM 205 CB GLU 19 -4.690 7.306 2.256 1.00 0.00 C ATOM 206 CG GLU 19 -5.121 8.173 1.047 1.00 0.00 C ATOM 207 CD GLU 19 -6.624 8.197 0.842 1.00 0.00 C ATOM 208 OE1 GLU 19 -7.119 7.413 0.004 1.00 0.00 O ATOM 209 OE2 GLU 19 -7.309 9.000 1.508 1.00 0.00 O ATOM 212 N VAL 20 -2.615 4.991 1.333 1.00 0.00 N ATOM 214 CA VAL 20 -2.142 4.083 0.273 1.00 0.00 C ATOM 218 C VAL 20 -3.406 3.387 -0.279 1.00 0.00 C ATOM 219 O VAL 20 -4.349 3.121 0.481 1.00 0.00 O ATOM 215 CB VAL 20 -1.139 2.983 0.797 1.00 0.00 C ATOM 216 CG1 VAL 20 -0.171 2.578 -0.314 1.00 0.00 C ATOM 217 CG2 VAL 20 -0.375 3.457 2.031 1.00 0.00 C ATOM 220 N ARG 21 -3.421 3.130 -1.594 1.00 0.00 N ATOM 222 CA ARG 21 -4.548 2.477 -2.283 1.00 0.00 C ATOM 235 C ARG 21 -4.217 1.060 -2.791 1.00 0.00 C ATOM 236 O ARG 21 -3.146 0.842 -3.371 1.00 0.00 O ATOM 223 CB ARG 21 -5.104 3.368 -3.425 1.00 0.00 C ATOM 224 CG ARG 21 -4.073 4.008 -4.389 1.00 0.00 C ATOM 225 CD ARG 21 -4.740 4.860 -5.467 1.00 0.00 C ATOM 226 NE ARG 21 -5.495 4.060 -6.437 1.00 0.00 N ATOM 228 CZ ARG 21 -6.171 4.551 -7.477 1.00 0.00 C ATOM 229 NH1 ARG 21 -6.816 3.723 -8.287 1.00 0.00 N ATOM 232 NH2 ARG 21 -6.210 5.859 -7.718 1.00 0.00 N ATOM 237 N CYS 22 -5.127 0.113 -2.521 1.00 0.00 N ATOM 239 CA CYS 22 -5.007 -1.300 -2.925 1.00 0.00 C ATOM 242 C CYS 22 -6.271 -1.718 -3.687 1.00 0.00 C ATOM 243 O CYS 22 -7.345 -1.151 -3.454 1.00 0.00 O ATOM 240 CB CYS 22 -4.827 -2.203 -1.695 1.00 0.00 C ATOM 241 SG CYS 22 -3.360 -1.834 -0.705 1.00 0.00 S ATOM 244 N ASP 23 -6.131 -2.692 -4.599 1.00 0.00 N ATOM 246 CA ASP 23 -7.242 -3.215 -5.416 1.00 0.00 C ATOM 251 C ASP 23 -7.614 -4.661 -5.018 1.00 0.00 C ATOM 252 O ASP 23 -7.023 -5.629 -5.521 1.00 0.00 O ATOM 247 CB ASP 23 -6.908 -3.122 -6.922 1.00 0.00 C ATOM 248 CG ASP 23 -6.772 -1.683 -7.413 1.00 0.00 C ATOM 249 OD1 ASP 23 -5.646 -1.140 -7.377 1.00 0.00 O ATOM 250 OD2 ASP 23 -7.790 -1.100 -7.850 1.00 0.00 O ATOM 253 N GLU 24 -8.555 -4.780 -4.070 1.00 0.00 N ATOM 255 CA GLU 24 -9.053 -6.073 -3.556 1.00 0.00 C ATOM 261 C GLU 24 -10.585 -6.159 -3.672 1.00 0.00 C ATOM 262 O GLU 24 -11.096 -7.018 -4.401 1.00 0.00 O ATOM 256 CB GLU 24 -8.614 -6.303 -2.095 1.00 0.00 C ATOM 257 CG GLU 24 -7.117 -6.539 -1.906 1.00 0.00 C ATOM 258 CD GLU 24 -6.737 -6.760 -0.453 1.00 0.00 C ATOM 259 OE1 GLU 24 -6.741 -7.928 -0.006 1.00 0.00 O ATOM 260 OE2 GLU 24 -6.432 -5.768 0.242 1.00 0.00 O ATOM 263 N SER 25 -11.298 -5.273 -2.957 1.00 0.00 N ATOM 265 CA SER 25 -12.772 -5.207 -2.945 1.00 0.00 C ATOM 269 C SER 25 -13.236 -3.760 -3.179 1.00 0.00 C ATOM 270 O SER 25 -12.611 -2.820 -2.670 1.00 0.00 O ATOM 266 CB SER 25 -13.332 -5.729 -1.608 1.00 0.00 C ATOM 267 OG SER 25 -14.746 -5.853 -1.640 1.00 0.00 O ATOM 271 N ASN 26 -14.332 -3.608 -3.944 1.00 0.00 N ATOM 273 CA ASN 26 -14.991 -2.326 -4.324 1.00 0.00 C ATOM 280 C ASN 26 -14.092 -1.135 -4.733 1.00 0.00 C ATOM 281 O ASN 26 -13.349 -0.594 -3.902 1.00 0.00 O ATOM 274 CB ASN 26 -16.023 -1.884 -3.258 1.00 0.00 C ATOM 275 CG ASN 26 -17.194 -2.852 -3.131 1.00 0.00 C ATOM 276 OD1 ASN 26 -18.214 -2.706 -3.808 1.00 0.00 O ATOM 277 ND2 ASN 26 -17.057 -3.838 -2.248 1.00 0.00 N ATOM 282 N HIS 27 -14.174 -0.762 -6.023 1.00 0.00 N ATOM 284 CA HIS 27 -13.431 0.344 -6.689 1.00 0.00 C ATOM 292 C HIS 27 -12.092 0.858 -6.096 1.00 0.00 C ATOM 293 O HIS 27 -11.025 0.577 -6.656 1.00 0.00 O ATOM 294 CB HIS 27 -14.383 1.523 -7.043 1.00 0.00 C ATOM 285 CG HIS 27 -15.226 2.015 -5.897 1.00 0.00 C ATOM 287 ND1 HIS 27 -16.222 1.255 -5.322 1.00 0.00 N ATOM 286 CD2 HIS 27 -15.230 3.198 -5.237 1.00 0.00 C ATOM 289 CE1 HIS 27 -16.803 1.946 -4.357 1.00 0.00 C ATOM 290 NE2 HIS 27 -16.219 3.128 -4.286 1.00 0.00 N ATOM 295 N CYS 28 -12.169 1.600 -4.979 1.00 0.00 N ATOM 297 CA CYS 28 -11.000 2.168 -4.279 1.00 0.00 C ATOM 300 C CYS 28 -11.003 1.813 -2.784 1.00 0.00 C ATOM 301 O CYS 28 -12.050 1.896 -2.126 1.00 0.00 O ATOM 298 CB CYS 28 -10.942 3.696 -4.459 1.00 0.00 C ATOM 299 SG CYS 28 -12.431 4.586 -3.937 1.00 0.00 S ATOM 302 N VAL 29 -9.835 1.392 -2.275 1.00 0.00 N ATOM 304 CA VAL 29 -9.625 1.011 -0.860 1.00 0.00 C ATOM 308 C VAL 29 -8.567 1.970 -0.272 1.00 0.00 C ATOM 309 O VAL 29 -7.634 2.375 -0.979 1.00 0.00 O ATOM 305 CB VAL 29 -9.150 -0.499 -0.700 1.00 0.00 C ATOM 306 CG1 VAL 29 -9.308 -0.982 0.754 1.00 0.00 C ATOM 307 CG2 VAL 29 -9.938 -1.422 -1.631 1.00 0.00 C ATOM 310 N GLU 30 -8.749 2.349 1.003 1.00 0.00 N ATOM 312 CA GLU 30 -7.839 3.257 1.729 1.00 0.00 C ATOM 318 C GLU 30 -7.093 2.496 2.838 1.00 0.00 C ATOM 319 O GLU 30 -7.713 1.771 3.629 1.00 0.00 O ATOM 313 CB GLU 30 -8.617 4.440 2.337 1.00 0.00 C ATOM 314 CG GLU 30 -9.259 5.380 1.319 1.00 0.00 C ATOM 315 CD GLU 30 -10.058 6.493 1.974 1.00 0.00 C ATOM 316 OE1 GLU 30 -11.270 6.300 2.204 1.00 0.00 O ATOM 317 OE2 GLU 30 -9.475 7.561 2.255 1.00 0.00 O ATOM 320 N VAL 31 -5.760 2.644 2.849 1.00 0.00 N ATOM 322 CA VAL 31 -4.853 2.019 3.835 1.00 0.00 C ATOM 326 C VAL 31 -4.205 3.191 4.595 1.00 0.00 C ATOM 327 O VAL 31 -3.714 4.148 3.978 1.00 0.00 O ATOM 323 CB VAL 31 -3.750 1.100 3.156 1.00 0.00 C ATOM 324 CG1 VAL 31 -3.093 0.166 4.188 1.00 0.00 C ATOM 325 CG2 VAL 31 -4.356 0.268 2.024 1.00 0.00 C ATOM 328 N ARG 32 -4.261 3.110 5.929 1.00 0.00 N ATOM 330 CA ARG 32 -3.724 4.128 6.843 1.00 0.00 C ATOM 343 C ARG 32 -2.578 3.595 7.721 1.00 0.00 C ATOM 344 O ARG 32 -2.596 2.424 8.119 1.00 0.00 O ATOM 331 CB ARG 32 -4.856 4.722 7.723 1.00 0.00 C ATOM 332 CG ARG 32 -5.729 3.711 8.513 1.00 0.00 C ATOM 333 CD ARG 32 -6.867 4.382 9.273 1.00 0.00 C ATOM 334 NE ARG 32 -7.982 4.757 8.399 1.00 0.00 N ATOM 336 CZ ARG 32 -9.274 4.637 8.709 1.00 0.00 C ATOM 337 NH1 ARG 32 -9.658 4.146 9.883 1.00 0.00 N ATOM 340 NH2 ARG 32 -10.193 5.011 7.830 1.00 0.00 N ATOM 345 N CYS 33 -1.597 4.463 8.004 1.00 0.00 N ATOM 347 CA CYS 33 -0.432 4.150 8.851 1.00 0.00 C ATOM 350 C CYS 33 -0.546 4.976 10.141 1.00 0.00 C ATOM 351 O CYS 33 -0.146 4.513 11.217 1.00 0.00 O ATOM 348 CB CYS 33 0.873 4.497 8.124 1.00 0.00 C ATOM 349 SG CYS 33 2.386 4.006 8.993 1.00 0.00 S ATOM 352 N SER 34 -1.098 6.190 10.005 1.00 0.00 N ATOM 354 CA SER 34 -1.313 7.141 11.108 1.00 0.00 C ATOM 358 C SER 34 -2.816 7.414 11.286 1.00 0.00 C ATOM 359 O SER 34 -3.613 7.066 10.406 1.00 0.00 O ATOM 355 CB SER 34 -0.564 8.457 10.835 1.00 0.00 C ATOM 356 OG SER 34 0.840 8.262 10.858 1.00 0.00 O ATOM 360 N ASP 35 -3.185 8.033 12.418 1.00 0.00 N ATOM 362 CA ASP 35 -4.580 8.379 12.766 1.00 0.00 C ATOM 367 C ASP 35 -5.107 9.629 12.017 1.00 0.00 C ATOM 368 O ASP 35 -6.292 9.980 12.130 1.00 0.00 O ATOM 363 CB ASP 35 -4.737 8.524 14.302 1.00 0.00 C ATOM 364 CG ASP 35 -3.660 9.409 14.946 1.00 0.00 C ATOM 365 OD1 ASP 35 -2.607 8.872 15.352 1.00 0.00 O ATOM 366 OD2 ASP 35 -3.880 10.635 15.056 1.00 0.00 O ATOM 369 N THR 36 -4.221 10.245 11.222 1.00 0.00 N ATOM 371 CA THR 36 -4.510 11.450 10.420 1.00 0.00 C ATOM 376 C THR 36 -4.941 11.131 8.967 1.00 0.00 C ATOM 377 O THR 36 -5.799 11.829 8.410 1.00 0.00 O ATOM 372 CB THR 36 -3.306 12.486 10.464 1.00 0.00 C ATOM 373 OG1 THR 36 -3.581 13.601 9.606 1.00 0.00 O ATOM 375 CG2 THR 36 -1.957 11.839 10.074 1.00 0.00 C ATOM 378 N LYS 37 -4.367 10.054 8.393 1.00 0.00 N ATOM 380 CA LYS 37 -4.602 9.539 7.009 1.00 0.00 C ATOM 389 C LYS 37 -4.735 10.589 5.868 1.00 0.00 C ATOM 390 O LYS 37 -4.365 11.753 6.061 1.00 0.00 O ATOM 381 CB LYS 37 -5.741 8.472 6.973 1.00 0.00 C ATOM 382 CG LYS 37 -7.143 8.901 7.458 1.00 0.00 C ATOM 383 CD LYS 37 -8.167 7.795 7.246 1.00 0.00 C ATOM 384 CE LYS 37 -9.561 8.203 7.716 1.00 0.00 C ATOM 385 NZ LYS 37 -9.674 8.349 9.199 1.00 0.00 N ATOM 391 N TYR 38 -5.233 10.162 4.693 1.00 0.00 N ATOM 393 CA TYR 38 -5.464 10.990 3.480 1.00 0.00 C ATOM 403 C TYR 38 -4.218 11.667 2.858 1.00 0.00 C ATOM 404 O TYR 38 -3.328 12.124 3.586 1.00 0.00 O ATOM 394 CB TYR 38 -6.598 12.038 3.721 1.00 0.00 C ATOM 395 CG TYR 38 -7.408 12.507 2.500 1.00 0.00 C ATOM 396 CD1 TYR 38 -7.041 13.673 1.784 1.00 0.00 C ATOM 398 CD2 TYR 38 -8.568 11.810 2.078 1.00 0.00 C ATOM 397 CE1 TYR 38 -7.809 14.132 0.678 1.00 0.00 C ATOM 399 CE2 TYR 38 -9.341 12.263 0.973 1.00 0.00 C ATOM 400 CZ TYR 38 -8.953 13.421 0.282 1.00 0.00 C ATOM 401 OH TYR 38 -9.699 13.860 -0.788 1.00 0.00 O ATOM 405 N THR 39 -4.189 11.724 1.518 1.00 0.00 N ATOM 407 CA THR 39 -3.097 12.327 0.724 1.00 0.00 C ATOM 412 C THR 39 -3.603 13.641 0.081 1.00 0.00 C ATOM 413 O THR 39 -4.769 13.727 -0.332 1.00 0.00 O ATOM 408 CB THR 39 -2.593 11.340 -0.392 1.00 0.00 C ATOM 409 OG1 THR 39 -2.607 10.002 0.118 1.00 0.00 O ATOM 411 CG2 THR 39 -1.155 11.673 -0.832 1.00 0.00 C ATOM 414 N LEU 40 -2.720 14.649 0.026 1.00 0.00 N ATOM 416 CA LEU 40 -3.012 15.977 -0.550 1.00 0.00 C ATOM 421 C LEU 40 -2.250 16.200 -1.864 1.00 0.00 C ATOM 422 O LEU 40 -1.137 15.682 -2.031 1.00 0.00 O ATOM 417 CB LEU 40 -2.660 17.099 0.452 1.00 0.00 C ATOM 418 CG LEU 40 -3.450 17.292 1.760 1.00 0.00 C ATOM 419 CD1 LEU 40 -2.476 17.526 2.906 1.00 0.00 C ATOM 420 CD2 LEU 40 -4.452 18.453 1.661 1.00 0.00 C ATOM 423 N CYS 41 -2.861 16.963 -2.782 1.00 0.00 N ATOM 425 CA CYS 41 -2.291 17.291 -4.102 1.00 0.00 C ATOM 428 C CYS 41 -1.858 18.759 -4.161 1.00 0.00 C ATOM 429 O CYS 41 -0.866 19.054 -4.864 1.00 0.00 O ATOM 426 CB CYS 41 -3.312 16.994 -5.212 1.00 0.00 C ATOM 427 SG CYS 41 -2.677 17.136 -6.905 1.00 0.00 S TER END