####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 44 ( 344), selected 44 , name T0953s2TS390_1-D1 # Molecule2: number of CA atoms 44 ( 344), selected 44 , name T0953s2-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0953s2TS390_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 38 2 - 39 4.99 8.18 LONGEST_CONTINUOUS_SEGMENT: 38 3 - 40 4.82 8.10 LCS_AVERAGE: 84.45 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 19 19 - 37 1.84 9.19 LCS_AVERAGE: 34.66 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 13 19 - 31 0.97 8.25 LCS_AVERAGE: 20.87 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 44 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT A 2 A 2 3 4 38 3 3 3 6 6 8 11 12 13 15 17 18 19 23 24 28 31 33 38 38 LCS_GDT V 3 V 3 3 7 38 3 3 4 6 8 10 12 16 18 22 26 29 31 35 36 36 37 38 38 39 LCS_GDT Q 4 Q 4 5 7 38 3 4 5 6 8 10 13 22 23 26 27 29 33 35 36 36 37 38 38 39 LCS_GDT G 5 G 5 5 7 38 2 4 5 9 12 16 19 24 26 27 31 33 33 35 36 36 37 38 38 39 LCS_GDT P 6 P 6 5 15 38 3 4 5 5 8 12 19 24 26 27 31 33 33 35 36 36 37 38 38 39 LCS_GDT W 7 W 7 12 17 38 3 11 12 13 15 17 20 24 26 29 31 33 33 35 36 36 37 38 38 39 LCS_GDT V 8 V 8 12 17 38 7 11 12 13 15 17 20 24 26 29 31 33 33 35 36 36 37 38 38 39 LCS_GDT G 9 G 9 12 17 38 7 11 12 13 15 17 20 24 26 29 31 33 33 35 36 36 37 38 38 39 LCS_GDT S 10 S 10 12 17 38 6 11 12 13 15 17 20 24 26 29 31 33 33 35 36 36 37 38 38 39 LCS_GDT S 11 S 11 12 17 38 7 11 12 14 15 18 20 24 26 29 31 33 33 35 36 36 37 38 38 39 LCS_GDT Y 12 Y 12 12 17 38 7 11 12 14 16 18 22 24 26 29 31 33 33 35 36 36 37 38 38 39 LCS_GDT V 13 V 13 12 17 38 6 11 12 14 15 18 22 24 26 29 31 33 33 35 36 36 37 38 38 39 LCS_GDT A 14 A 14 12 17 38 7 11 12 13 15 18 22 24 26 29 31 33 33 35 36 36 37 38 38 39 LCS_GDT E 15 E 15 12 17 38 3 11 12 13 15 18 22 24 26 29 31 33 33 35 36 36 37 38 38 39 LCS_GDT T 16 T 16 12 17 38 7 11 12 13 15 18 22 24 26 29 31 33 33 35 36 36 37 38 38 39 LCS_GDT G 17 G 17 12 17 38 7 11 12 13 15 17 20 24 26 29 31 33 33 35 36 36 37 38 38 39 LCS_GDT Q 18 Q 18 12 17 38 3 3 12 13 14 17 19 24 26 29 31 33 33 35 36 36 37 38 38 39 LCS_GDT N 19 N 19 13 19 38 7 12 12 14 17 18 22 24 26 29 31 33 33 35 36 36 37 38 38 39 LCS_GDT W 20 W 20 13 19 38 8 12 12 16 17 18 22 24 26 29 31 33 33 35 36 36 37 38 38 39 LCS_GDT A 21 A 21 13 19 38 8 12 12 16 17 18 22 24 26 29 31 33 33 35 36 36 37 38 38 39 LCS_GDT S 22 S 22 13 19 38 8 12 12 16 17 18 22 24 26 29 31 33 33 35 36 36 37 38 38 39 LCS_GDT L 23 L 23 13 19 38 8 12 12 16 17 18 22 24 26 29 31 33 33 35 36 36 37 38 38 39 LCS_GDT A 24 A 24 13 19 38 8 12 12 16 17 18 22 24 26 29 31 33 33 35 36 36 37 38 38 39 LCS_GDT A 25 A 25 13 19 38 8 12 12 16 17 18 22 24 26 29 31 33 33 35 36 36 37 38 38 39 LCS_GDT N 26 N 26 13 19 38 8 12 12 16 17 18 22 24 26 29 31 33 33 35 36 36 37 38 38 39 LCS_GDT E 27 E 27 13 19 38 8 12 12 16 17 18 22 24 26 29 31 33 33 35 36 36 37 38 38 39 LCS_GDT L 28 L 28 13 19 38 8 12 12 16 17 18 22 24 26 29 31 33 33 35 36 36 37 38 38 39 LCS_GDT R 29 R 29 13 19 38 8 12 12 16 17 18 22 24 26 29 31 33 33 35 36 36 37 38 38 39 LCS_GDT V 30 V 30 13 19 38 4 12 12 16 17 18 22 24 26 29 31 33 33 35 36 36 37 38 38 39 LCS_GDT T 31 T 31 13 19 38 3 8 11 16 17 18 22 24 26 29 31 33 33 35 36 36 37 38 38 39 LCS_GDT E 32 E 32 6 19 38 4 6 6 9 13 18 22 24 26 29 31 33 33 35 36 36 37 38 38 39 LCS_GDT R 33 R 33 6 19 38 4 8 11 16 17 18 22 24 26 29 31 33 33 35 36 36 37 38 38 39 LCS_GDT P 34 P 34 6 19 38 4 8 8 16 17 18 21 24 26 29 30 33 33 35 36 36 37 38 38 39 LCS_GDT F 35 F 35 6 19 38 4 6 11 16 17 18 22 24 26 29 31 33 33 35 36 36 37 38 38 39 LCS_GDT W 36 W 36 6 19 38 4 6 10 16 17 18 21 24 26 27 30 33 33 35 36 36 37 38 38 39 LCS_GDT I 37 I 37 6 19 38 4 6 9 15 16 18 22 24 26 27 31 33 33 35 36 36 37 38 38 39 LCS_GDT S 38 S 38 5 9 38 4 4 6 7 10 15 19 23 24 27 29 29 32 34 36 36 37 38 38 39 LCS_GDT S 39 S 39 5 9 38 4 4 6 7 9 11 17 21 23 27 29 29 30 31 32 36 37 38 38 39 LCS_GDT F 40 F 40 5 9 38 4 4 6 7 9 11 15 19 23 27 29 29 30 31 31 34 37 38 38 39 LCS_GDT I 41 I 41 5 9 37 4 4 6 7 9 11 15 17 20 24 26 28 30 30 31 31 32 33 33 39 LCS_GDT G 42 G 42 4 9 34 3 4 4 6 9 9 12 13 16 19 22 23 27 28 31 31 32 32 33 33 LCS_GDT R 43 R 43 4 9 34 3 4 5 7 9 9 12 13 16 19 20 23 25 26 29 31 32 32 33 33 LCS_GDT S 44 S 44 3 9 33 3 3 4 4 9 9 12 12 15 15 15 18 22 23 27 28 29 32 33 33 LCS_GDT K 45 K 45 3 3 15 2 3 3 3 3 7 7 8 10 11 12 14 15 19 21 21 22 24 25 27 LCS_AVERAGE LCS_A: 46.66 ( 20.87 34.66 84.45 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 8 12 12 16 17 18 22 24 26 29 31 33 33 35 36 36 37 38 38 39 GDT PERCENT_AT 18.18 27.27 27.27 36.36 38.64 40.91 50.00 54.55 59.09 65.91 70.45 75.00 75.00 79.55 81.82 81.82 84.09 86.36 86.36 88.64 GDT RMS_LOCAL 0.30 0.55 0.55 1.37 1.45 1.59 2.45 2.63 2.85 3.37 3.64 3.79 3.79 4.15 4.35 4.35 4.61 4.82 4.82 5.23 GDT RMS_ALL_AT 8.05 8.08 8.08 9.63 9.45 9.29 8.01 8.25 8.24 8.73 8.52 8.52 8.52 8.50 8.35 8.35 8.21 8.10 8.10 7.95 # Checking swapping # possible swapping detected: E 15 E 15 # possible swapping detected: E 27 E 27 # possible swapping detected: E 32 E 32 # possible swapping detected: F 35 F 35 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA A 2 A 2 15.640 0 0.634 0.601 17.270 0.000 0.000 - LGA V 3 V 3 10.869 0 0.126 1.072 12.022 0.000 0.000 8.214 LGA Q 4 Q 4 12.214 0 0.673 1.015 15.341 0.000 0.000 15.341 LGA G 5 G 5 10.370 0 0.034 0.034 10.851 0.000 0.000 - LGA P 6 P 6 8.941 0 0.090 0.429 12.208 0.000 0.000 11.672 LGA W 7 W 7 9.753 0 0.426 1.239 20.863 0.000 0.000 20.863 LGA V 8 V 8 8.447 0 0.120 0.174 9.501 0.000 0.000 8.408 LGA G 9 G 9 7.669 0 0.053 0.053 8.315 0.000 0.000 - LGA S 10 S 10 7.539 0 0.097 0.598 9.107 0.000 0.000 8.781 LGA S 11 S 11 4.692 0 0.017 0.679 5.940 14.545 10.000 4.565 LGA Y 12 Y 12 2.882 0 0.126 1.066 7.842 31.818 12.727 7.842 LGA V 13 V 13 3.405 0 0.068 0.985 7.447 13.182 10.390 7.447 LGA A 14 A 14 4.417 0 0.020 0.021 5.105 6.818 5.818 - LGA E 15 E 15 3.206 0 0.048 1.128 5.324 15.455 13.535 3.533 LGA T 16 T 16 4.028 0 0.107 1.154 5.900 6.364 12.468 2.285 LGA G 17 G 17 6.112 0 0.718 0.718 6.112 0.000 0.000 - LGA Q 18 Q 18 5.444 0 0.021 1.297 12.354 13.636 6.061 12.217 LGA N 19 N 19 1.640 0 0.657 1.529 7.616 47.727 24.545 7.616 LGA W 20 W 20 1.444 0 0.077 1.040 6.712 61.818 43.377 5.792 LGA A 21 A 21 2.387 0 0.038 0.044 2.974 38.182 36.000 - LGA S 22 S 22 2.274 0 0.105 0.147 2.445 41.364 40.303 2.393 LGA L 23 L 23 0.939 0 0.073 0.093 1.811 69.545 69.773 1.292 LGA A 24 A 24 1.613 0 0.029 0.030 2.033 54.545 51.273 - LGA A 25 A 25 2.334 0 0.017 0.022 2.612 38.182 36.000 - LGA N 26 N 26 1.683 0 0.064 0.104 2.455 58.182 51.364 2.455 LGA E 27 E 27 1.211 0 0.068 0.979 3.338 65.455 52.525 3.338 LGA L 28 L 28 1.258 0 0.076 0.144 1.603 65.455 63.636 1.603 LGA R 29 R 29 1.297 0 0.088 1.400 8.534 65.455 37.025 8.534 LGA V 30 V 30 1.451 0 0.258 1.161 3.619 65.909 51.948 3.619 LGA T 31 T 31 1.375 0 0.695 0.668 4.260 52.273 34.026 4.258 LGA E 32 E 32 3.779 0 0.588 1.363 11.176 25.909 11.515 11.176 LGA R 33 R 33 2.592 0 0.063 1.380 12.003 22.727 9.256 12.003 LGA P 34 P 34 3.745 0 0.086 0.432 6.885 11.364 6.753 6.885 LGA F 35 F 35 2.491 0 0.095 1.242 3.466 38.182 33.554 2.922 LGA W 36 W 36 3.679 0 0.654 1.284 14.251 16.818 4.805 13.941 LGA I 37 I 37 2.946 0 0.073 0.957 5.739 15.000 16.818 2.903 LGA S 38 S 38 6.663 0 0.116 0.654 8.968 0.455 0.303 7.937 LGA S 39 S 39 7.421 0 0.178 0.718 10.635 0.000 0.000 6.842 LGA F 40 F 40 8.068 0 0.120 1.046 11.331 0.000 0.000 9.689 LGA I 41 I 41 12.009 0 0.562 0.570 15.118 0.000 0.000 12.013 LGA G 42 G 42 16.640 0 0.151 0.151 19.410 0.000 0.000 - LGA R 43 R 43 16.757 0 0.641 1.296 17.476 0.000 0.000 16.521 LGA S 44 S 44 19.050 0 0.714 0.806 22.134 0.000 0.000 17.713 LGA K 45 K 45 22.953 0 0.141 0.362 25.569 0.000 0.000 21.521 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 44 176 176 100.00 344 344 100.00 44 35 SUMMARY(RMSD_GDC): 7.604 7.787 8.637 21.736 16.950 9.506 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 44 44 4.0 24 2.63 50.000 47.201 0.880 LGA_LOCAL RMSD: 2.626 Number of atoms: 24 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 8.247 Number of assigned atoms: 44 Std_ASGN_ATOMS RMSD: 7.604 Standard rmsd on all 44 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.576544 * X + -0.653356 * Y + 0.490635 * Z + 1.364093 Y_new = -0.815062 * X + -0.417857 * Y + 0.401336 * Z + 28.157131 Z_new = -0.057200 * X + -0.631285 * Y + -0.773438 * Z + -15.437266 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -0.955146 0.057231 -2.457048 [DEG: -54.7259 3.2791 -140.7785 ] ZXZ: 2.256412 2.455044 -3.051230 [DEG: 129.2829 140.6637 -174.8226 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0953s2TS390_1-D1 REMARK 2: T0953s2-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0953s2TS390_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 44 44 4.0 24 2.63 47.201 7.60 REMARK ---------------------------------------------------------- MOLECULE T0953s2TS390_1-D1 PFRMAT TS TARGET T0953s2 MODEL 1 PARENT N/A ATOM 20 N ALA 2 -2.266 45.543 12.321 1.00 12.35 ATOM 21 CA ALA 2 -2.579 44.776 13.521 1.00 12.35 ATOM 22 C ALA 2 -1.298 44.459 14.275 1.00 12.35 ATOM 23 O ALA 2 -1.278 44.375 15.508 1.00 12.35 ATOM 24 CB ALA 2 -3.256 43.479 13.164 1.00 12.35 ATOM 30 N VAL 3 -0.242 44.274 13.481 1.00 10.66 ATOM 31 CA VAL 3 1.107 43.909 13.862 1.00 10.66 ATOM 32 C VAL 3 2.067 45.092 13.685 1.00 10.66 ATOM 33 O VAL 3 1.732 46.105 13.051 1.00 10.66 ATOM 34 CB VAL 3 1.614 42.790 12.934 1.00 10.66 ATOM 35 CG1 VAL 3 0.794 41.538 13.016 1.00 10.66 ATOM 36 CG2 VAL 3 1.540 43.295 11.511 1.00 10.66 ATOM 46 N GLN 4 3.285 44.947 14.225 1.00 8.15 ATOM 47 CA GLN 4 4.329 45.979 14.126 1.00 8.15 ATOM 48 C GLN 4 4.696 46.264 12.663 1.00 8.15 ATOM 49 O GLN 4 5.190 47.338 12.324 1.00 8.15 ATOM 50 CB GLN 4 5.570 45.540 14.895 1.00 8.15 ATOM 51 CG GLN 4 5.350 45.361 16.388 1.00 8.15 ATOM 52 CD GLN 4 4.733 43.986 16.734 1.00 8.15 ATOM 53 OE1 GLN 4 3.920 43.440 15.984 1.00 8.15 ATOM 54 NE2 GLN 4 5.127 43.428 17.874 1.00 8.15 ATOM 63 N GLY 5 4.453 45.280 11.804 1.00 7.19 ATOM 64 CA GLY 5 4.656 45.395 10.374 1.00 7.19 ATOM 65 C GLY 5 4.513 44.038 9.668 1.00 7.19 ATOM 66 O GLY 5 4.502 42.986 10.319 1.00 7.19 ATOM 70 N PRO 6 4.455 44.022 8.325 1.00 6.00 ATOM 71 CA PRO 6 4.390 42.835 7.483 1.00 6.00 ATOM 72 C PRO 6 5.483 41.834 7.842 1.00 6.00 ATOM 73 O PRO 6 5.287 40.627 7.692 1.00 6.00 ATOM 74 CB PRO 6 4.633 43.423 6.091 1.00 6.00 ATOM 75 CG PRO 6 4.040 44.812 6.178 1.00 6.00 ATOM 76 CD PRO 6 4.387 45.291 7.570 1.00 6.00 ATOM 84 N TRP 7 6.634 42.332 8.311 1.00 5.57 ATOM 85 CA TRP 7 7.767 41.500 8.702 1.00 5.57 ATOM 86 C TRP 7 7.449 40.575 9.881 1.00 5.57 ATOM 87 O TRP 7 8.055 39.504 10.032 1.00 5.57 ATOM 88 CB TRP 7 8.960 42.386 9.064 1.00 5.57 ATOM 89 CG TRP 7 8.716 43.263 10.256 1.00 5.57 ATOM 90 CD1 TRP 7 8.233 44.536 10.245 1.00 5.57 ATOM 91 CD2 TRP 7 8.942 42.931 11.647 1.00 5.57 ATOM 92 NE1 TRP 7 8.144 45.021 11.528 1.00 5.57 ATOM 93 CE2 TRP 7 8.572 44.050 12.398 1.00 5.57 ATOM 94 CE3 TRP 7 9.419 41.790 12.306 1.00 5.57 ATOM 95 CZ2 TRP 7 8.665 44.069 13.781 1.00 5.57 ATOM 96 CZ3 TRP 7 9.511 41.809 13.691 1.00 5.57 ATOM 97 CH2 TRP 7 9.144 42.919 14.409 1.00 5.57 ATOM 108 N VAL 8 6.467 40.970 10.698 1.00 5.02 ATOM 109 CA VAL 8 6.057 40.182 11.849 1.00 5.02 ATOM 110 C VAL 8 5.347 38.990 11.298 1.00 5.02 ATOM 111 O VAL 8 5.591 37.836 11.665 1.00 5.02 ATOM 112 CB VAL 8 5.044 40.954 12.708 1.00 5.02 ATOM 113 CG1 VAL 8 4.525 40.081 13.821 1.00 5.02 ATOM 114 CG2 VAL 8 5.651 42.181 13.230 1.00 5.02 ATOM 124 N GLY 9 4.464 39.317 10.370 1.00 4.98 ATOM 125 CA GLY 9 3.646 38.350 9.678 1.00 4.98 ATOM 126 C GLY 9 4.477 37.336 8.925 1.00 4.98 ATOM 127 O GLY 9 4.307 36.126 9.087 1.00 4.98 ATOM 131 N SER 10 5.396 37.852 8.111 1.00 5.55 ATOM 132 CA SER 10 6.277 37.044 7.292 1.00 5.55 ATOM 133 C SER 10 7.124 36.128 8.164 1.00 5.55 ATOM 134 O SER 10 7.284 34.945 7.860 1.00 5.55 ATOM 135 CB SER 10 7.170 37.932 6.449 1.00 5.55 ATOM 136 OG SER 10 6.416 38.674 5.531 1.00 5.55 ATOM 142 N SER 11 7.634 36.652 9.279 1.00 5.36 ATOM 143 CA SER 11 8.421 35.827 10.170 1.00 5.36 ATOM 144 C SER 11 7.548 34.732 10.784 1.00 5.36 ATOM 145 O SER 11 7.931 33.556 10.831 1.00 5.36 ATOM 146 CB SER 11 9.043 36.678 11.260 1.00 5.36 ATOM 147 OG SER 11 9.948 37.603 10.720 1.00 5.36 ATOM 153 N TYR 12 6.337 35.105 11.209 1.00 5.45 ATOM 154 CA TYR 12 5.443 34.168 11.866 1.00 5.45 ATOM 155 C TYR 12 5.154 32.976 10.986 1.00 5.45 ATOM 156 O TYR 12 5.386 31.827 11.381 1.00 5.45 ATOM 157 CB TYR 12 4.137 34.859 12.264 1.00 5.45 ATOM 158 CG TYR 12 3.122 33.931 12.895 1.00 5.45 ATOM 159 CD1 TYR 12 3.261 33.552 14.221 1.00 5.45 ATOM 160 CD2 TYR 12 2.054 33.461 12.146 1.00 5.45 ATOM 161 CE1 TYR 12 2.334 32.704 14.797 1.00 5.45 ATOM 162 CE2 TYR 12 1.127 32.614 12.723 1.00 5.45 ATOM 163 CZ TYR 12 1.264 32.236 14.042 1.00 5.45 ATOM 164 OH TYR 12 0.342 31.392 14.616 1.00 5.45 ATOM 174 N VAL 13 4.675 33.260 9.780 1.00 5.67 ATOM 175 CA VAL 13 4.293 32.229 8.834 1.00 5.67 ATOM 176 C VAL 13 5.484 31.443 8.303 1.00 5.67 ATOM 177 O VAL 13 5.381 30.237 8.073 1.00 5.67 ATOM 178 CB VAL 13 3.540 32.862 7.649 1.00 5.67 ATOM 179 CG1 VAL 13 4.503 33.634 6.758 1.00 5.67 ATOM 180 CG2 VAL 13 2.818 31.783 6.856 1.00 5.67 ATOM 190 N ALA 14 6.655 32.086 8.189 1.00 5.40 ATOM 191 CA ALA 14 7.848 31.386 7.732 1.00 5.40 ATOM 192 C ALA 14 8.184 30.211 8.645 1.00 5.40 ATOM 193 O ALA 14 8.614 29.157 8.167 1.00 5.40 ATOM 194 CB ALA 14 9.022 32.347 7.677 1.00 5.40 ATOM 200 N GLU 15 7.973 30.378 9.954 1.00 5.53 ATOM 201 CA GLU 15 8.233 29.288 10.896 1.00 5.53 ATOM 202 C GLU 15 6.980 28.443 11.201 1.00 5.53 ATOM 203 O GLU 15 7.089 27.251 11.497 1.00 5.53 ATOM 204 CB GLU 15 8.819 29.828 12.205 1.00 5.53 ATOM 205 CG GLU 15 10.186 30.499 12.066 1.00 5.53 ATOM 206 CD GLU 15 10.769 30.968 13.394 1.00 5.53 ATOM 207 OE1 GLU 15 10.098 30.860 14.397 1.00 5.53 ATOM 208 OE2 GLU 15 11.891 31.421 13.398 1.00 5.53 ATOM 215 N THR 16 5.800 29.069 11.140 1.00 6.97 ATOM 216 CA THR 16 4.526 28.432 11.483 1.00 6.97 ATOM 217 C THR 16 3.903 27.572 10.387 1.00 6.97 ATOM 218 O THR 16 3.322 26.525 10.678 1.00 6.97 ATOM 219 CB THR 16 3.503 29.503 11.902 1.00 6.97 ATOM 220 OG1 THR 16 4.015 30.247 13.015 1.00 6.97 ATOM 221 CG2 THR 16 2.183 28.856 12.294 1.00 6.97 ATOM 229 N GLY 17 3.955 28.033 9.141 1.00 7.96 ATOM 230 CA GLY 17 3.242 27.356 8.078 1.00 7.96 ATOM 231 C GLY 17 1.806 27.851 8.103 1.00 7.96 ATOM 232 O GLY 17 1.536 28.922 8.657 1.00 7.96 ATOM 236 N GLN 18 0.894 27.096 7.491 1.00 7.11 ATOM 237 CA GLN 18 -0.485 27.548 7.364 1.00 7.11 ATOM 238 C GLN 18 -1.144 27.648 8.734 1.00 7.11 ATOM 239 O GLN 18 -0.905 26.830 9.624 1.00 7.11 ATOM 240 CB GLN 18 -1.272 26.610 6.445 1.00 7.11 ATOM 241 CG GLN 18 -0.794 26.639 5.000 1.00 7.11 ATOM 242 CD GLN 18 -1.540 25.669 4.070 1.00 7.11 ATOM 243 OE1 GLN 18 -1.146 25.520 2.897 1.00 7.11 ATOM 244 NE2 GLN 18 -2.588 25.022 4.567 1.00 7.11 ATOM 253 N ASN 19 -1.960 28.685 8.891 1.00 5.88 ATOM 254 CA ASN 19 -2.645 28.971 10.141 1.00 5.88 ATOM 255 C ASN 19 -3.866 29.823 9.872 1.00 5.88 ATOM 256 O ASN 19 -3.901 30.527 8.871 1.00 5.88 ATOM 257 CB ASN 19 -1.689 29.725 11.028 1.00 5.88 ATOM 258 CG ASN 19 -1.339 31.066 10.389 1.00 5.88 ATOM 259 OD1 ASN 19 -2.024 32.065 10.614 1.00 5.88 ATOM 260 ND2 ASN 19 -0.300 31.106 9.578 1.00 5.88 ATOM 267 N TRP 20 -4.835 29.850 10.777 1.00 6.49 ATOM 268 CA TRP 20 -5.950 30.769 10.574 1.00 6.49 ATOM 269 C TRP 20 -5.548 32.130 11.099 1.00 6.49 ATOM 270 O TRP 20 -4.832 32.225 12.100 1.00 6.49 ATOM 271 CB TRP 20 -7.212 30.281 11.287 1.00 6.49 ATOM 272 CG TRP 20 -7.832 29.075 10.648 1.00 6.49 ATOM 273 CD1 TRP 20 -7.725 28.698 9.343 1.00 6.49 ATOM 274 CD2 TRP 20 -8.663 28.075 11.287 1.00 6.49 ATOM 275 NE1 TRP 20 -8.429 27.540 9.125 1.00 6.49 ATOM 276 CE2 TRP 20 -9.008 27.143 10.304 1.00 6.49 ATOM 277 CE3 TRP 20 -9.134 27.900 12.593 1.00 6.49 ATOM 278 CZ2 TRP 20 -9.808 26.047 10.583 1.00 6.49 ATOM 279 CZ3 TRP 20 -9.935 26.798 12.873 1.00 6.49 ATOM 280 CH2 TRP 20 -10.261 25.896 11.893 1.00 6.49 ATOM 291 N ALA 21 -6.079 33.177 10.491 1.00 5.46 ATOM 292 CA ALA 21 -5.724 34.534 10.872 1.00 5.46 ATOM 293 C ALA 21 -5.999 34.845 12.338 1.00 5.46 ATOM 294 O ALA 21 -5.196 35.514 13.000 1.00 5.46 ATOM 295 CB ALA 21 -6.498 35.496 9.994 1.00 5.46 ATOM 301 N SER 22 -7.097 34.320 12.877 1.00 5.62 ATOM 302 CA SER 22 -7.431 34.599 14.267 1.00 5.62 ATOM 303 C SER 22 -6.495 33.861 15.235 1.00 5.62 ATOM 304 O SER 22 -6.343 34.238 16.401 1.00 5.62 ATOM 305 CB SER 22 -8.871 34.205 14.538 1.00 5.62 ATOM 306 OG SER 22 -9.031 32.815 14.471 1.00 5.62 ATOM 312 N LEU 23 -5.813 32.825 14.753 1.00 5.06 ATOM 313 CA LEU 23 -4.940 32.079 15.636 1.00 5.06 ATOM 314 C LEU 23 -3.654 32.850 15.721 1.00 5.06 ATOM 315 O LEU 23 -3.085 33.014 16.806 1.00 5.06 ATOM 316 CB LEU 23 -4.687 30.659 15.113 1.00 5.06 ATOM 317 CG LEU 23 -5.915 29.740 15.061 1.00 5.06 ATOM 318 CD1 LEU 23 -5.547 28.439 14.362 1.00 5.06 ATOM 319 CD2 LEU 23 -6.414 29.479 16.475 1.00 5.06 ATOM 331 N ALA 24 -3.225 33.374 14.569 1.00 4.67 ATOM 332 CA ALA 24 -2.022 34.177 14.516 1.00 4.67 ATOM 333 C ALA 24 -2.189 35.410 15.374 1.00 4.67 ATOM 334 O ALA 24 -1.291 35.784 16.122 1.00 4.67 ATOM 335 CB ALA 24 -1.715 34.581 13.096 1.00 4.67 ATOM 341 N ALA 25 -3.377 36.030 15.325 1.00 5.03 ATOM 342 CA ALA 25 -3.570 37.217 16.141 1.00 5.03 ATOM 343 C ALA 25 -3.396 36.899 17.609 1.00 5.03 ATOM 344 O ALA 25 -2.741 37.638 18.358 1.00 5.03 ATOM 345 CB ALA 25 -4.945 37.813 15.931 1.00 5.03 ATOM 351 N ASN 26 -3.906 35.755 18.043 1.00 5.22 ATOM 352 CA ASN 26 -3.756 35.445 19.443 1.00 5.22 ATOM 353 C ASN 26 -2.300 35.121 19.788 1.00 5.22 ATOM 354 O ASN 26 -1.743 35.707 20.719 1.00 5.22 ATOM 355 CB ASN 26 -4.687 34.308 19.815 1.00 5.22 ATOM 356 CG ASN 26 -6.130 34.759 19.893 1.00 5.22 ATOM 357 OD1 ASN 26 -6.419 35.954 20.040 1.00 5.22 ATOM 358 ND2 ASN 26 -7.037 33.823 19.795 1.00 5.22 ATOM 365 N GLU 27 -1.656 34.246 19.013 1.00 5.72 ATOM 366 CA GLU 27 -0.295 33.829 19.351 1.00 5.72 ATOM 367 C GLU 27 0.704 34.996 19.336 1.00 5.72 ATOM 368 O GLU 27 1.586 35.089 20.191 1.00 5.72 ATOM 369 CB GLU 27 0.172 32.742 18.378 1.00 5.72 ATOM 370 CG GLU 27 1.515 32.118 18.730 1.00 5.72 ATOM 371 CD GLU 27 1.829 30.902 17.904 1.00 5.72 ATOM 372 OE1 GLU 27 1.019 30.538 17.086 1.00 5.72 ATOM 373 OE2 GLU 27 2.879 30.335 18.094 1.00 5.72 ATOM 380 N LEU 28 0.533 35.912 18.385 1.00 6.62 ATOM 381 CA LEU 28 1.392 37.081 18.251 1.00 6.62 ATOM 382 C LEU 28 1.072 38.203 19.233 1.00 6.62 ATOM 383 O LEU 28 1.817 39.179 19.313 1.00 6.62 ATOM 384 CB LEU 28 1.292 37.625 16.821 1.00 6.62 ATOM 385 CG LEU 28 1.920 36.746 15.730 1.00 6.62 ATOM 386 CD1 LEU 28 1.560 37.303 14.359 1.00 6.62 ATOM 387 CD2 LEU 28 3.428 36.699 15.922 1.00 6.62 ATOM 399 N ARG 29 -0.025 38.069 19.993 1.00 6.78 ATOM 400 CA ARG 29 -0.486 39.109 20.904 1.00 6.78 ATOM 401 C ARG 29 -0.715 40.442 20.173 1.00 6.78 ATOM 402 O ARG 29 -0.263 41.499 20.619 1.00 6.78 ATOM 403 CB ARG 29 0.500 39.289 22.060 1.00 6.78 ATOM 404 CG ARG 29 0.344 38.280 23.199 1.00 6.78 ATOM 405 CD ARG 29 0.833 36.894 22.824 1.00 6.78 ATOM 406 NE ARG 29 0.811 35.991 23.981 1.00 6.78 ATOM 407 CZ ARG 29 1.110 34.662 23.977 1.00 6.78 ATOM 408 NH1 ARG 29 1.464 34.030 22.875 1.00 6.78 ATOM 409 NH2 ARG 29 1.042 33.986 25.111 1.00 6.78 ATOM 423 N VAL 30 -1.434 40.371 19.042 1.00 7.28 ATOM 424 CA VAL 30 -1.735 41.522 18.184 1.00 7.28 ATOM 425 C VAL 30 -3.237 41.628 17.919 1.00 7.28 ATOM 426 O VAL 30 -4.014 40.815 18.429 1.00 7.28 ATOM 427 CB VAL 30 -0.988 41.402 16.843 1.00 7.28 ATOM 428 CG1 VAL 30 0.517 41.382 17.072 1.00 7.28 ATOM 429 CG2 VAL 30 -1.438 40.150 16.108 1.00 7.28 ATOM 439 N THR 31 -3.675 42.674 17.218 1.00 7.72 ATOM 440 CA THR 31 -5.115 42.822 16.993 1.00 7.72 ATOM 441 C THR 31 -5.510 42.002 15.777 1.00 7.72 ATOM 442 O THR 31 -4.681 41.315 15.185 1.00 7.72 ATOM 443 CB THR 31 -5.516 44.295 16.789 1.00 7.72 ATOM 444 OG1 THR 31 -5.117 44.725 15.481 1.00 7.72 ATOM 445 CG2 THR 31 -4.852 45.178 17.834 1.00 7.72 ATOM 453 N GLU 32 -6.781 42.054 15.431 1.00 7.48 ATOM 454 CA GLU 32 -7.286 41.324 14.283 1.00 7.48 ATOM 455 C GLU 32 -7.468 42.209 13.037 1.00 7.48 ATOM 456 O GLU 32 -8.153 41.812 12.093 1.00 7.48 ATOM 457 CB GLU 32 -8.616 40.659 14.644 1.00 7.48 ATOM 458 CG GLU 32 -8.512 39.583 15.715 1.00 7.48 ATOM 459 CD GLU 32 -9.831 38.928 16.019 1.00 7.48 ATOM 460 OE1 GLU 32 -10.821 39.348 15.468 1.00 7.48 ATOM 461 OE2 GLU 32 -9.849 38.009 16.802 1.00 7.48 ATOM 468 N ARG 33 -6.973 43.454 13.061 1.00 7.62 ATOM 469 CA ARG 33 -7.213 44.299 11.894 1.00 7.62 ATOM 470 C ARG 33 -6.283 45.513 11.749 1.00 7.62 ATOM 471 O ARG 33 -6.055 46.241 12.719 1.00 7.62 ATOM 472 CB ARG 33 -8.651 44.797 11.925 1.00 7.62 ATOM 473 CG ARG 33 -9.092 45.555 10.683 1.00 7.62 ATOM 474 CD ARG 33 -10.530 45.920 10.744 1.00 7.62 ATOM 475 NE ARG 33 -10.792 46.923 11.764 1.00 7.62 ATOM 476 CZ ARG 33 -12.020 47.347 12.123 1.00 7.62 ATOM 477 NH1 ARG 33 -13.085 46.847 11.538 1.00 7.62 ATOM 478 NH2 ARG 33 -12.152 48.267 13.063 1.00 7.62 ATOM 492 N PRO 34 -5.724 45.734 10.539 1.00 6.46 ATOM 493 CA PRO 34 -5.713 44.889 9.349 1.00 6.46 ATOM 494 C PRO 34 -4.789 43.697 9.578 1.00 6.46 ATOM 495 O PRO 34 -3.751 43.819 10.237 1.00 6.46 ATOM 496 CB PRO 34 -5.184 45.822 8.255 1.00 6.46 ATOM 497 CG PRO 34 -4.250 46.735 8.973 1.00 6.46 ATOM 498 CD PRO 34 -4.900 46.957 10.313 1.00 6.46 ATOM 506 N PHE 35 -5.105 42.557 8.971 1.00 5.60 ATOM 507 CA PHE 35 -4.203 41.423 9.123 1.00 5.60 ATOM 508 C PHE 35 -2.952 41.532 8.283 1.00 5.60 ATOM 509 O PHE 35 -2.993 41.872 7.098 1.00 5.60 ATOM 510 CB PHE 35 -4.929 40.126 8.765 1.00 5.60 ATOM 511 CG PHE 35 -5.795 39.593 9.870 1.00 5.60 ATOM 512 CD1 PHE 35 -7.177 39.683 9.793 1.00 5.60 ATOM 513 CD2 PHE 35 -5.231 38.998 10.989 1.00 5.60 ATOM 514 CE1 PHE 35 -7.976 39.192 10.809 1.00 5.60 ATOM 515 CE2 PHE 35 -6.026 38.505 12.006 1.00 5.60 ATOM 516 CZ PHE 35 -7.400 38.603 11.915 1.00 5.60 ATOM 526 N TRP 36 -1.855 41.078 8.872 1.00 5.08 ATOM 527 CA TRP 36 -0.558 40.962 8.212 1.00 5.08 ATOM 528 C TRP 36 -0.614 40.119 6.953 1.00 5.08 ATOM 529 O TRP 36 0.209 40.276 6.052 1.00 5.08 ATOM 530 CB TRP 36 0.468 40.358 9.173 1.00 5.08 ATOM 531 CG TRP 36 0.089 39.000 9.678 1.00 5.08 ATOM 532 CD1 TRP 36 -0.571 38.715 10.835 1.00 5.08 ATOM 533 CD2 TRP 36 0.344 37.726 9.039 1.00 5.08 ATOM 534 NE1 TRP 36 -0.741 37.359 10.962 1.00 5.08 ATOM 535 CE2 TRP 36 -0.188 36.738 9.871 1.00 5.08 ATOM 536 CE3 TRP 36 0.973 37.350 7.845 1.00 5.08 ATOM 537 CZ2 TRP 36 -0.113 35.391 9.553 1.00 5.08 ATOM 538 CZ3 TRP 36 1.047 35.999 7.525 1.00 5.08 ATOM 539 CH2 TRP 36 0.517 35.046 8.357 1.00 5.08 ATOM 550 N ILE 37 -1.612 39.257 6.892 1.00 4.64 ATOM 551 CA ILE 37 -1.863 38.345 5.804 1.00 4.64 ATOM 552 C ILE 37 -2.067 39.084 4.501 1.00 4.64 ATOM 553 O ILE 37 -1.607 38.630 3.457 1.00 4.64 ATOM 554 CB ILE 37 -3.061 37.464 6.129 1.00 4.64 ATOM 555 CG1 ILE 37 -2.665 36.583 7.251 1.00 4.64 ATOM 556 CG2 ILE 37 -3.454 36.660 4.939 1.00 4.64 ATOM 557 CD1 ILE 37 -3.737 35.870 7.894 1.00 4.64 ATOM 569 N SER 38 -2.788 40.206 4.527 1.00 4.76 ATOM 570 CA SER 38 -3.040 40.904 3.276 1.00 4.76 ATOM 571 C SER 38 -1.727 41.399 2.674 1.00 4.76 ATOM 572 O SER 38 -1.513 41.296 1.459 1.00 4.76 ATOM 573 CB SER 38 -3.983 42.068 3.505 1.00 4.76 ATOM 574 OG SER 38 -5.257 41.618 3.878 1.00 4.76 ATOM 580 N SER 39 -0.835 41.917 3.532 1.00 4.94 ATOM 581 CA SER 39 0.457 42.422 3.083 1.00 4.94 ATOM 582 C SER 39 1.359 41.281 2.630 1.00 4.94 ATOM 583 O SER 39 2.012 41.372 1.583 1.00 4.94 ATOM 584 CB SER 39 1.131 43.201 4.195 1.00 4.94 ATOM 585 OG SER 39 0.425 44.376 4.485 1.00 4.94 ATOM 591 N PHE 40 1.351 40.186 3.394 1.00 5.03 ATOM 592 CA PHE 40 2.136 39.015 3.060 1.00 5.03 ATOM 593 C PHE 40 1.776 38.505 1.689 1.00 5.03 ATOM 594 O PHE 40 2.652 38.303 0.843 1.00 5.03 ATOM 595 CB PHE 40 1.922 37.908 4.094 1.00 5.03 ATOM 596 CG PHE 40 2.625 36.622 3.760 1.00 5.03 ATOM 597 CD1 PHE 40 3.997 36.502 3.928 1.00 5.03 ATOM 598 CD2 PHE 40 1.916 35.532 3.278 1.00 5.03 ATOM 599 CE1 PHE 40 4.644 35.320 3.621 1.00 5.03 ATOM 600 CE2 PHE 40 2.562 34.350 2.971 1.00 5.03 ATOM 601 CZ PHE 40 3.927 34.245 3.143 1.00 5.03 ATOM 611 N ILE 41 0.483 38.330 1.440 1.00 5.40 ATOM 612 CA ILE 41 0.050 37.874 0.133 1.00 5.40 ATOM 613 C ILE 41 0.415 38.886 -0.940 1.00 5.40 ATOM 614 O ILE 41 1.068 38.536 -1.921 1.00 5.40 ATOM 615 CB ILE 41 -1.469 37.623 0.112 1.00 5.40 ATOM 616 CG1 ILE 41 -1.825 36.427 0.999 1.00 5.40 ATOM 617 CG2 ILE 41 -1.950 37.395 -1.313 1.00 5.40 ATOM 618 CD1 ILE 41 -3.306 36.279 1.261 1.00 5.40 ATOM 630 N GLY 42 0.122 40.165 -0.718 1.00 6.41 ATOM 631 CA GLY 42 0.421 41.161 -1.742 1.00 6.41 ATOM 632 C GLY 42 1.896 41.149 -2.164 1.00 6.41 ATOM 633 O GLY 42 2.210 41.413 -3.331 1.00 6.41 ATOM 637 N ARG 43 2.800 40.856 -1.223 1.00 7.96 ATOM 638 CA ARG 43 4.226 40.785 -1.517 1.00 7.96 ATOM 639 C ARG 43 4.733 39.425 -2.042 1.00 7.96 ATOM 640 O ARG 43 5.652 39.396 -2.868 1.00 7.96 ATOM 641 CB ARG 43 5.009 41.143 -0.262 1.00 7.96 ATOM 642 CG ARG 43 4.904 42.599 0.163 1.00 7.96 ATOM 643 CD ARG 43 5.713 42.876 1.378 1.00 7.96 ATOM 644 NE ARG 43 5.644 44.274 1.768 1.00 7.96 ATOM 645 CZ ARG 43 6.359 44.825 2.769 1.00 7.96 ATOM 646 NH1 ARG 43 7.190 44.084 3.469 1.00 7.96 ATOM 647 NH2 ARG 43 6.226 46.110 3.046 1.00 7.96 ATOM 661 N SER 44 4.167 38.302 -1.571 1.00 10.39 ATOM 662 CA SER 44 4.709 36.976 -1.905 1.00 10.39 ATOM 663 C SER 44 3.834 36.046 -2.762 1.00 10.39 ATOM 664 O SER 44 4.332 35.045 -3.280 1.00 10.39 ATOM 665 CB SER 44 5.040 36.259 -0.611 1.00 10.39 ATOM 666 OG SER 44 3.887 36.048 0.156 1.00 10.39 ATOM 672 N LYS 45 2.540 36.319 -2.872 1.00 13.85 ATOM 673 CA LYS 45 1.635 35.416 -3.571 1.00 13.85 ATOM 674 C LYS 45 0.661 36.175 -4.459 1.00 13.85 ATOM 675 O LYS 45 -0.131 36.986 -3.986 1.00 13.85 ATOM 676 CB LYS 45 0.863 34.579 -2.549 1.00 13.85 ATOM 677 CG LYS 45 -0.103 33.580 -3.144 1.00 13.85 ATOM 678 CD LYS 45 -0.814 32.782 -2.059 1.00 13.85 ATOM 679 CE LYS 45 -1.809 31.800 -2.666 1.00 13.85 ATOM 680 NZ LYS 45 -2.519 31.006 -1.623 1.00 13.85 TER END