####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 41 ( 335), selected 41 , name T0955TS498_5 # Molecule2: number of CA atoms 41 ( 665), selected 41 , name T0955.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS498_5.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 39 3 - 41 4.87 5.65 LCS_AVERAGE: 93.34 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 20 13 - 32 1.94 7.38 LONGEST_CONTINUOUS_SEGMENT: 20 14 - 33 1.93 7.54 LONGEST_CONTINUOUS_SEGMENT: 20 15 - 34 1.91 7.89 LCS_AVERAGE: 43.66 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 12 5 - 16 0.95 8.75 LONGEST_CONTINUOUS_SEGMENT: 12 6 - 17 0.97 8.25 LCS_AVERAGE: 20.35 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 41 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 1 S 1 3 17 24 0 6 13 16 17 19 21 22 23 25 26 27 28 31 32 35 37 37 39 40 LCS_GDT Q 2 Q 2 4 17 24 1 3 5 5 13 17 19 21 23 25 26 27 28 30 32 35 37 37 39 40 LCS_GDT E 3 E 3 4 17 39 3 3 5 12 15 19 21 22 23 25 28 32 33 35 35 37 38 39 39 40 LCS_GDT T 4 T 4 4 17 39 3 3 5 10 15 18 21 22 23 25 26 29 33 35 35 37 38 39 39 40 LCS_GDT R 5 R 5 12 17 39 3 3 11 14 17 19 20 22 23 25 26 27 28 32 35 36 37 39 39 40 LCS_GDT K 6 K 6 12 17 39 3 10 13 16 17 19 21 22 23 25 26 28 32 35 35 37 38 39 39 40 LCS_GDT K 7 K 7 12 17 39 3 10 13 16 17 19 21 22 23 25 28 30 33 35 35 37 38 39 39 40 LCS_GDT C 8 C 8 12 17 39 7 10 13 16 17 19 21 22 23 25 30 32 33 35 35 37 38 39 39 40 LCS_GDT T 9 T 9 12 17 39 7 10 13 16 17 19 21 22 29 30 30 32 33 35 35 37 38 39 39 40 LCS_GDT E 10 E 10 12 17 39 7 10 13 16 17 19 21 22 29 30 30 32 33 35 35 37 38 39 39 40 LCS_GDT M 11 M 11 12 17 39 6 10 13 16 17 19 24 29 29 30 30 32 33 35 35 37 38 39 39 40 LCS_GDT K 12 K 12 12 17 39 7 10 13 16 17 20 26 29 29 30 30 32 33 35 35 37 38 39 39 40 LCS_GDT K 13 K 13 12 20 39 7 10 13 16 17 22 26 29 29 30 30 32 33 35 35 37 38 39 39 40 LCS_GDT K 14 K 14 12 20 39 7 10 13 16 17 19 24 29 29 30 30 32 33 35 35 37 38 39 39 40 LCS_GDT F 15 F 15 12 20 39 7 10 14 16 21 24 26 29 29 30 30 32 33 35 35 37 38 39 39 40 LCS_GDT K 16 K 16 12 20 39 5 10 14 16 21 24 26 29 29 30 30 32 33 35 35 37 38 39 39 40 LCS_GDT N 17 N 17 12 20 39 5 10 14 16 21 24 26 29 29 30 30 32 33 35 35 37 38 39 39 40 LCS_GDT C 18 C 18 11 20 39 4 10 14 16 21 24 26 29 29 30 30 32 33 35 35 37 38 39 39 40 LCS_GDT E 19 E 19 9 20 39 5 10 14 16 21 24 26 29 29 30 30 32 33 35 35 37 38 39 39 40 LCS_GDT V 20 V 20 9 20 39 4 10 14 16 21 24 26 29 29 30 30 32 33 35 35 37 38 39 39 40 LCS_GDT R 21 R 21 9 20 39 4 10 14 16 21 24 26 29 29 30 30 32 33 35 35 37 38 39 39 40 LCS_GDT C 22 C 22 9 20 39 4 10 14 16 21 24 26 29 29 30 30 32 33 35 35 37 38 39 39 40 LCS_GDT D 23 D 23 9 20 39 3 10 14 16 21 24 26 29 29 30 30 32 33 35 35 37 38 39 39 40 LCS_GDT E 24 E 24 6 20 39 3 5 6 15 21 24 26 29 29 29 30 32 32 33 35 37 38 39 39 39 LCS_GDT S 25 S 25 6 20 39 5 10 14 16 21 24 26 29 29 30 30 32 33 35 35 37 38 39 39 40 LCS_GDT N 26 N 26 6 20 39 5 10 14 16 21 24 26 29 29 30 30 32 33 35 35 37 38 39 39 40 LCS_GDT H 27 H 27 6 20 39 4 10 14 16 21 24 26 29 29 30 30 32 33 35 35 37 38 39 39 40 LCS_GDT C 28 C 28 6 20 39 4 9 14 16 20 24 26 29 29 30 30 32 33 35 35 37 38 39 39 40 LCS_GDT V 29 V 29 7 20 39 4 7 8 11 14 17 18 23 26 29 30 32 32 33 35 37 38 39 39 40 LCS_GDT E 30 E 30 7 20 39 4 7 10 16 18 22 26 29 29 30 30 32 33 35 35 37 38 39 39 40 LCS_GDT V 31 V 31 7 20 39 4 10 14 16 19 24 26 29 29 30 30 32 33 35 35 37 38 39 39 40 LCS_GDT R 32 R 32 7 20 39 4 9 13 16 21 24 26 29 29 30 30 32 33 35 35 37 38 39 39 40 LCS_GDT C 33 C 33 7 20 39 3 7 13 16 21 24 26 29 29 30 30 32 33 35 35 37 38 39 39 40 LCS_GDT S 34 S 34 7 20 39 4 7 11 15 21 24 26 29 29 30 30 32 33 35 35 37 38 39 39 40 LCS_GDT D 35 D 35 7 13 39 3 6 8 13 15 19 23 26 26 28 30 31 32 33 35 37 38 39 39 40 LCS_GDT T 36 T 36 6 13 39 4 5 9 16 21 24 26 29 29 30 30 32 33 35 35 37 38 39 39 40 LCS_GDT K 37 K 37 6 13 39 4 5 13 16 21 24 26 29 29 30 30 32 33 35 35 37 38 39 39 40 LCS_GDT Y 38 Y 38 6 13 39 4 5 13 16 21 24 26 29 29 30 30 32 33 35 35 37 38 39 39 40 LCS_GDT T 39 T 39 6 13 39 4 8 11 16 21 24 26 29 29 30 30 32 33 35 35 37 38 39 39 40 LCS_GDT L 40 L 40 6 13 39 4 7 13 16 21 24 26 29 29 30 30 32 33 35 35 37 38 39 39 40 LCS_GDT C 41 C 41 6 12 39 3 6 9 14 21 24 26 29 29 30 30 32 33 35 35 37 38 39 39 40 LCS_AVERAGE LCS_A: 52.45 ( 20.35 43.66 93.34 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 7 10 14 16 21 24 26 29 29 30 30 32 33 35 35 37 38 39 39 40 GDT PERCENT_AT 17.07 24.39 34.15 39.02 51.22 58.54 63.41 70.73 70.73 73.17 73.17 78.05 80.49 85.37 85.37 90.24 92.68 95.12 95.12 97.56 GDT RMS_LOCAL 0.30 0.48 0.92 1.13 1.78 1.97 2.32 2.63 2.63 3.13 2.78 3.32 3.93 4.29 4.14 4.45 4.65 4.87 4.87 5.34 GDT RMS_ALL_AT 8.92 8.95 7.32 7.35 8.17 8.15 7.60 7.30 7.30 6.52 7.41 6.78 5.80 5.59 6.01 5.92 5.76 5.65 5.65 5.51 # Checking swapping # possible swapping detected: E 3 E 3 # possible swapping detected: E 19 E 19 # possible swapping detected: D 23 D 23 # possible swapping detected: E 24 E 24 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA S 1 S 1 20.236 0 0.179 0.300 21.012 0.000 0.000 21.012 LGA Q 2 Q 2 20.234 0 0.287 0.748 27.269 0.000 0.000 27.269 LGA E 3 E 3 12.991 0 0.142 1.183 15.562 0.000 0.000 13.535 LGA T 4 T 4 11.818 0 0.106 1.210 14.911 0.000 0.000 14.911 LGA R 5 R 5 14.961 0 0.146 0.824 24.506 0.000 0.000 24.506 LGA K 6 K 6 14.095 0 0.118 1.084 15.177 0.000 0.000 13.905 LGA K 7 K 7 11.361 0 0.088 0.573 13.885 0.000 0.000 13.885 LGA C 8 C 8 9.687 0 0.095 0.113 10.494 0.000 0.000 9.825 LGA T 9 T 9 8.663 0 0.055 0.265 11.103 0.000 0.000 11.103 LGA E 10 E 10 7.837 0 0.053 0.749 10.458 0.000 0.000 10.458 LGA M 11 M 11 5.039 0 0.054 1.104 6.291 8.182 5.000 4.668 LGA K 12 K 12 3.926 0 0.042 0.560 7.872 19.545 8.687 7.872 LGA K 13 K 13 3.317 0 0.063 0.359 7.005 18.636 8.889 6.827 LGA K 14 K 14 3.967 0 0.021 0.635 9.770 16.818 7.677 9.770 LGA F 15 F 15 0.986 0 0.389 1.283 6.255 70.909 41.488 6.255 LGA K 16 K 16 0.752 0 0.045 0.899 2.082 74.545 68.283 1.300 LGA N 17 N 17 1.770 0 0.158 1.124 3.607 54.545 44.545 2.129 LGA C 18 C 18 2.261 0 0.057 0.771 4.803 38.182 32.121 4.803 LGA E 19 E 19 2.110 0 0.021 0.671 2.265 38.182 48.485 1.591 LGA V 20 V 20 2.620 0 0.051 0.307 2.858 27.273 28.831 2.360 LGA R 21 R 21 2.404 0 0.101 1.123 5.083 41.364 24.959 3.072 LGA C 22 C 22 1.210 0 0.066 0.651 3.703 58.182 51.515 3.703 LGA D 23 D 23 1.440 0 0.292 1.156 7.281 61.818 34.318 7.281 LGA E 24 E 24 2.915 0 0.177 1.090 6.660 30.909 16.162 6.660 LGA S 25 S 25 1.579 0 0.129 0.594 2.205 47.727 49.091 1.380 LGA N 26 N 26 1.810 0 0.604 0.789 5.233 40.909 25.909 4.153 LGA H 27 H 27 1.716 0 0.173 1.119 8.003 45.455 24.909 6.711 LGA C 28 C 28 3.171 0 0.129 0.234 4.894 13.182 23.636 1.606 LGA V 29 V 29 6.089 0 0.271 0.368 9.015 0.909 0.519 9.015 LGA E 30 E 30 3.578 0 0.119 0.800 4.709 6.364 12.121 4.709 LGA V 31 V 31 2.909 0 0.022 1.066 3.645 35.909 26.234 3.645 LGA R 32 R 32 1.089 0 0.096 1.275 7.906 66.818 43.306 7.906 LGA C 33 C 33 1.479 0 0.531 1.111 3.301 50.000 46.364 1.788 LGA S 34 S 34 2.986 0 0.275 0.675 5.305 17.727 16.667 3.810 LGA D 35 D 35 5.992 0 0.247 0.910 7.588 0.909 0.455 6.316 LGA T 36 T 36 3.029 0 0.036 1.267 4.028 13.182 15.584 3.656 LGA K 37 K 37 2.695 0 0.044 0.880 6.368 20.909 11.515 6.368 LGA Y 38 Y 38 2.730 0 0.122 1.258 9.036 32.727 15.758 9.036 LGA T 39 T 39 2.761 0 0.105 1.247 6.639 27.727 16.623 5.394 LGA L 40 L 40 0.951 0 0.234 0.737 5.712 66.818 41.818 4.271 LGA C 41 C 41 2.942 0 0.481 0.983 7.739 30.000 19.740 7.739 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 41 164 164 100.00 335 335 100.00 41 41 SUMMARY(RMSD_GDC): 5.493 5.396 6.346 26.253 19.786 10.687 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 41 41 4.0 29 2.63 56.098 55.321 1.064 LGA_LOCAL RMSD: 2.625 Number of atoms: 29 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 7.295 Number of assigned atoms: 41 Std_ASGN_ATOMS RMSD: 5.493 Standard rmsd on all 41 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.928853 * X + -0.369950 * Y + 0.019203 * Z + 3.336813 Y_new = 0.343743 * X + -0.880060 * Y + -0.327621 * Z + 1.231879 Z_new = 0.138103 * X + -0.297711 * Y + 0.944614 * Z + -1.671288 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 2.787149 -0.138546 -0.305312 [DEG: 159.6918 -7.9381 -17.4931 ] ZXZ: 0.058546 0.334379 2.707254 [DEG: 3.3544 19.1585 155.1142 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0955TS498_5 REMARK 2: T0955.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS498_5.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 41 41 4.0 29 2.63 55.321 5.49 REMARK ---------------------------------------------------------- MOLECULE T0955TS498_5 PFRMAT TS TARGET T0955 MODEL 5 PARENT N/A ATOM 1 CB SER 1 18.223 -10.719 -4.455 1.00 3.04 C ATOM 2 OG SER 1 18.989 -11.910 -4.509 1.00 3.04 O ATOM 4 C SER 1 18.228 -8.259 -3.705 1.00 3.04 C ATOM 5 O SER 1 17.920 -7.688 -2.651 1.00 3.04 O ATOM 8 N SER 1 19.179 -10.091 -2.253 1.00 3.04 N ATOM 10 CA SER 1 18.950 -9.631 -3.652 1.00 3.04 C ATOM 11 N GLN 2 17.963 -7.756 -4.921 1.00 4.16 N ATOM 13 CA GLN 2 17.360 -6.426 -5.193 1.00 4.16 C ATOM 14 CB GLN 2 17.777 -5.970 -6.609 1.00 4.16 C ATOM 15 CG GLN 2 17.362 -6.884 -7.775 1.00 4.16 C ATOM 16 CD GLN 2 17.814 -6.354 -9.121 1.00 4.16 C ATOM 17 OE1 GLN 2 18.912 -6.663 -9.585 1.00 4.16 O ATOM 18 NE2 GLN 2 16.969 -5.551 -9.757 1.00 4.16 N ATOM 21 C GLN 2 15.890 -5.975 -4.941 1.00 4.16 C ATOM 22 O GLN 2 15.693 -4.904 -4.352 1.00 4.16 O ATOM 23 N GLU 3 14.889 -6.765 -5.360 1.00 4.34 N ATOM 25 CA GLU 3 13.453 -6.375 -5.263 1.00 4.34 C ATOM 26 CB GLU 3 12.619 -7.200 -6.261 1.00 4.34 C ATOM 27 CG GLU 3 12.839 -6.854 -7.729 1.00 4.34 C ATOM 28 CD GLU 3 11.992 -7.698 -8.665 1.00 4.34 C ATOM 29 OE1 GLU 3 12.463 -8.774 -9.089 1.00 4.34 O ATOM 30 OE2 GLU 3 10.855 -7.284 -8.977 1.00 4.34 O ATOM 31 C GLU 3 12.631 -6.233 -3.961 1.00 4.34 C ATOM 32 O GLU 3 11.960 -5.206 -3.800 1.00 4.34 O ATOM 33 N THR 4 12.675 -7.212 -3.045 1.00 3.46 N ATOM 35 CA THR 4 11.846 -7.166 -1.812 1.00 3.46 C ATOM 36 CB THR 4 11.536 -8.611 -1.288 1.00 3.46 C ATOM 37 OG1 THR 4 12.758 -9.346 -1.150 1.00 3.46 O ATOM 39 CG2 THR 4 10.595 -9.351 -2.237 1.00 3.46 C ATOM 40 C THR 4 12.138 -6.275 -0.573 1.00 3.46 C ATOM 41 O THR 4 11.248 -5.518 -0.160 1.00 3.46 O ATOM 42 N ARG 5 13.351 -6.344 -0.003 1.00 2.24 N ATOM 44 CA ARG 5 13.706 -5.594 1.226 1.00 2.24 C ATOM 45 CB ARG 5 14.772 -6.379 2.005 1.00 2.24 C ATOM 46 CG ARG 5 14.209 -7.536 2.830 1.00 2.24 C ATOM 47 CD ARG 5 15.299 -8.290 3.589 1.00 2.24 C ATOM 48 NE ARG 5 16.184 -9.057 2.707 1.00 2.24 N ATOM 50 CZ ARG 5 17.213 -9.802 3.109 1.00 2.24 C ATOM 51 NH1 ARG 5 17.940 -10.453 2.210 1.00 2.24 N ATOM 54 NH2 ARG 5 17.526 -9.907 4.397 1.00 2.24 N ATOM 57 C ARG 5 13.984 -4.081 1.407 1.00 2.24 C ATOM 58 O ARG 5 13.354 -3.457 2.275 1.00 2.24 O ATOM 59 N LYS 6 14.929 -3.509 0.644 1.00 1.81 N ATOM 61 CA LYS 6 15.316 -2.083 0.785 1.00 1.81 C ATOM 62 CB LYS 6 16.787 -1.887 0.397 1.00 1.81 C ATOM 63 CG LYS 6 17.771 -2.297 1.486 1.00 1.81 C ATOM 64 CD LYS 6 19.213 -2.078 1.042 1.00 1.81 C ATOM 65 CE LYS 6 20.216 -2.484 2.119 1.00 1.81 C ATOM 66 NZ LYS 6 20.200 -1.591 3.317 1.00 1.81 N ATOM 70 C LYS 6 14.492 -0.879 0.296 1.00 1.81 C ATOM 71 O LYS 6 14.263 0.056 1.081 1.00 1.81 O ATOM 72 N LYS 7 14.072 -0.887 -0.977 1.00 1.86 N ATOM 74 CA LYS 7 13.296 0.224 -1.570 1.00 1.86 C ATOM 75 CB LYS 7 13.464 0.263 -3.092 1.00 1.86 C ATOM 76 CG LYS 7 14.578 1.201 -3.544 1.00 1.86 C ATOM 77 CD LYS 7 14.713 1.213 -5.060 1.00 1.86 C ATOM 78 CE LYS 7 15.823 2.148 -5.509 1.00 1.86 C ATOM 79 NZ LYS 7 15.967 2.169 -6.990 1.00 1.86 N ATOM 83 C LYS 7 11.825 0.444 -1.177 1.00 1.86 C ATOM 84 O LYS 7 11.423 1.592 -0.921 1.00 1.86 O ATOM 85 N CYS 8 11.041 -0.644 -1.118 1.00 1.89 N ATOM 87 CA CYS 8 9.600 -0.603 -0.770 1.00 1.89 C ATOM 88 CB CYS 8 8.938 -1.944 -1.093 1.00 1.89 C ATOM 89 SG CYS 8 7.174 -2.050 -0.711 1.00 1.89 S ATOM 90 C CYS 8 9.273 -0.192 0.674 1.00 1.89 C ATOM 91 O CYS 8 8.269 0.501 0.914 1.00 1.89 O ATOM 92 N THR 9 10.114 -0.630 1.619 1.00 1.82 N ATOM 94 CA THR 9 9.948 -0.327 3.054 1.00 1.82 C ATOM 95 CB THR 9 10.912 -1.182 3.932 1.00 1.82 C ATOM 96 OG1 THR 9 11.246 -2.388 3.235 1.00 1.82 O ATOM 98 CG2 THR 9 10.236 -1.575 5.237 1.00 1.82 C ATOM 99 C THR 9 10.117 1.175 3.365 1.00 1.82 C ATOM 100 O THR 9 9.431 1.708 4.254 1.00 1.82 O ATOM 101 N GLU 10 11.023 1.839 2.626 1.00 1.50 N ATOM 103 CA GLU 10 11.295 3.285 2.770 1.00 1.50 C ATOM 104 CB GLU 10 12.486 3.712 1.910 1.00 1.50 C ATOM 105 CG GLU 10 13.823 3.396 2.528 1.00 1.50 C ATOM 106 CD GLU 10 14.990 3.827 1.659 1.00 1.50 C ATOM 107 OE1 GLU 10 15.446 3.015 0.826 1.00 1.50 O ATOM 108 OE2 GLU 10 15.455 4.977 1.810 1.00 1.50 O ATOM 109 C GLU 10 10.054 4.051 2.353 1.00 1.50 C ATOM 110 O GLU 10 9.738 5.120 2.902 1.00 1.50 O ATOM 111 N MET 11 9.354 3.449 1.387 1.00 1.39 N ATOM 113 CA MET 11 8.103 3.968 0.839 1.00 1.39 C ATOM 114 CG MET 11 8.547 3.707 -1.615 1.00 1.39 C ATOM 115 SD MET 11 8.024 2.980 -3.181 1.00 1.39 S ATOM 116 CE MET 11 9.447 1.976 -3.586 1.00 1.39 C ATOM 117 C MET 11 6.975 3.891 1.862 1.00 1.39 C ATOM 118 O MET 11 6.151 4.807 1.953 1.00 1.39 O ATOM 119 CB MET 11 7.733 3.239 -0.443 1.00 1.39 C ATOM 120 N LYS 12 7.017 2.840 2.692 1.00 1.50 N ATOM 122 CA LYS 12 6.026 2.598 3.753 1.00 1.50 C ATOM 123 CB LYS 12 6.286 1.218 4.372 1.00 1.50 C ATOM 124 CG LYS 12 5.100 0.579 5.071 1.00 1.50 C ATOM 125 CD LYS 12 5.465 -0.779 5.647 1.00 1.50 C ATOM 126 CE LYS 12 4.277 -1.419 6.347 1.00 1.50 C ATOM 127 NZ LYS 12 4.620 -2.752 6.916 1.00 1.50 N ATOM 131 C LYS 12 6.114 3.711 4.828 1.00 1.50 C ATOM 132 O LYS 12 5.080 4.187 5.337 1.00 1.50 O ATOM 133 N LYS 13 7.357 4.104 5.142 1.00 1.38 N ATOM 135 CA LYS 13 7.680 5.140 6.137 1.00 1.38 C ATOM 136 CB LYS 13 9.147 5.039 6.542 1.00 1.38 C ATOM 137 CG LYS 13 9.403 3.964 7.556 1.00 1.38 C ATOM 138 CD LYS 13 10.881 3.894 7.936 1.00 1.38 C ATOM 139 CE LYS 13 11.161 2.804 8.968 1.00 1.38 C ATOM 140 NZ LYS 13 10.583 3.093 10.314 1.00 1.38 N ATOM 144 C LYS 13 7.351 6.606 5.815 1.00 1.38 C ATOM 145 O LYS 13 6.738 7.308 6.638 1.00 1.38 O ATOM 146 N LYS 14 7.774 7.048 4.624 1.00 1.53 N ATOM 148 CA LYS 14 7.579 8.416 4.109 1.00 1.53 C ATOM 149 CB LYS 14 8.448 8.646 2.867 1.00 1.53 C ATOM 150 CG LYS 14 9.938 8.609 3.111 1.00 1.53 C ATOM 151 CD LYS 14 10.714 8.846 1.824 1.00 1.53 C ATOM 152 CE LYS 14 12.214 8.809 2.070 1.00 1.53 C ATOM 153 NZ LYS 14 12.987 9.040 0.818 1.00 1.53 N ATOM 157 C LYS 14 6.115 8.647 3.718 1.00 1.53 C ATOM 158 O LYS 14 5.546 9.735 3.911 1.00 1.53 O ATOM 159 N PHE 15 5.552 7.568 3.174 1.00 1.50 N ATOM 161 CA PHE 15 4.199 7.428 2.641 1.00 1.50 C ATOM 162 CB PHE 15 4.288 6.492 1.391 1.00 1.50 C ATOM 163 CG PHE 15 3.168 5.470 1.210 1.00 1.50 C ATOM 164 CD1 PHE 15 3.083 4.305 2.020 1.00 1.50 C ATOM 165 CD2 PHE 15 2.281 5.593 0.123 1.00 1.50 C ATOM 166 CE1 PHE 15 2.135 3.286 1.745 1.00 1.50 C ATOM 167 CE2 PHE 15 1.330 4.582 -0.165 1.00 1.50 C ATOM 168 CZ PHE 15 1.257 3.425 0.648 1.00 1.50 C ATOM 169 C PHE 15 2.983 7.228 3.582 1.00 1.50 C ATOM 170 O PHE 15 1.841 7.493 3.166 1.00 1.50 O ATOM 171 N LYS 16 3.249 6.948 4.870 1.00 1.88 N ATOM 173 CA LYS 16 2.213 6.618 5.893 1.00 1.88 C ATOM 174 CB LYS 16 2.853 6.520 7.290 1.00 1.88 C ATOM 175 CG LYS 16 3.196 7.856 7.957 1.00 1.88 C ATOM 176 CD LYS 16 3.821 7.645 9.326 1.00 1.88 C ATOM 177 CE LYS 16 4.162 8.970 9.988 1.00 1.88 C ATOM 178 NZ LYS 16 4.776 8.779 11.331 1.00 1.88 N ATOM 182 C LYS 16 0.978 7.546 5.984 1.00 1.88 C ATOM 183 O LYS 16 -0.070 7.160 6.530 1.00 1.88 O ATOM 184 N ASN 17 1.115 8.744 5.409 1.00 1.82 N ATOM 186 CA ASN 17 0.062 9.768 5.368 1.00 1.82 C ATOM 187 CB ASN 17 0.708 11.138 5.160 1.00 1.82 C ATOM 188 CG ASN 17 1.650 11.518 6.296 1.00 1.82 C ATOM 189 OD1 ASN 17 2.847 11.229 6.250 1.00 1.82 O ATOM 190 ND2 ASN 17 1.113 12.187 7.314 1.00 1.82 N ATOM 193 C ASN 17 -0.955 9.461 4.257 1.00 1.82 C ATOM 194 O ASN 17 -1.895 10.227 4.003 1.00 1.82 O ATOM 195 N CYS 18 -0.759 8.282 3.662 1.00 2.31 N ATOM 197 CA CYS 18 -1.549 7.726 2.573 1.00 2.31 C ATOM 198 CB CYS 18 -0.650 7.008 1.591 1.00 2.31 C ATOM 199 SG CYS 18 -1.399 6.639 0.028 1.00 2.31 S ATOM 200 C CYS 18 -2.721 6.823 2.940 1.00 2.31 C ATOM 201 O CYS 18 -2.810 6.282 4.050 1.00 2.31 O ATOM 202 N GLU 19 -3.670 6.786 2.010 1.00 3.36 N ATOM 204 CA GLU 19 -4.884 5.991 2.094 1.00 3.36 C ATOM 205 CB GLU 19 -6.059 6.790 1.509 1.00 3.36 C ATOM 206 CG GLU 19 -5.705 7.675 0.309 1.00 3.36 C ATOM 207 CD GLU 19 -6.901 8.440 -0.227 1.00 3.36 C ATOM 208 OE1 GLU 19 -7.144 9.572 0.241 1.00 3.36 O ATOM 209 OE2 GLU 19 -7.597 7.910 -1.119 1.00 3.36 O ATOM 210 C GLU 19 -4.724 4.621 1.407 1.00 3.36 C ATOM 211 O GLU 19 -4.996 4.481 0.206 1.00 3.36 O ATOM 212 N VAL 20 -4.229 3.636 2.168 1.00 4.03 N ATOM 214 CA VAL 20 -4.019 2.279 1.655 1.00 4.03 C ATOM 215 CB VAL 20 -2.704 1.592 2.142 1.00 4.03 C ATOM 216 CG1 VAL 20 -2.145 0.704 1.028 1.00 4.03 C ATOM 217 CG2 VAL 20 -1.661 2.617 2.591 1.00 4.03 C ATOM 218 C VAL 20 -5.167 1.313 1.910 1.00 4.03 C ATOM 219 O VAL 20 -5.591 1.073 3.053 1.00 4.03 O ATOM 220 N ARG 21 -5.712 0.850 0.790 1.00 4.37 N ATOM 222 CA ARG 21 -6.766 -0.150 0.754 1.00 4.37 C ATOM 223 CB ARG 21 -7.997 0.369 0.006 1.00 4.37 C ATOM 224 CG ARG 21 -8.810 1.357 0.825 1.00 4.37 C ATOM 225 CD ARG 21 -10.035 1.870 0.068 1.00 4.37 C ATOM 226 NE ARG 21 -9.687 2.750 -1.052 1.00 4.37 N ATOM 228 CZ ARG 21 -10.562 3.332 -1.873 1.00 4.37 C ATOM 229 NH1 ARG 21 -10.123 4.109 -2.853 1.00 4.37 N ATOM 232 NH2 ARG 21 -11.871 3.146 -1.727 1.00 4.37 N ATOM 235 C ARG 21 -6.058 -1.308 0.050 1.00 4.37 C ATOM 236 O ARG 21 -5.832 -1.265 -1.169 1.00 4.37 O ATOM 237 N CYS 22 -5.680 -2.322 0.837 1.00 5.03 N ATOM 239 CA CYS 22 -4.935 -3.476 0.325 1.00 5.03 C ATOM 240 CB CYS 22 -4.021 -4.082 1.395 1.00 5.03 C ATOM 241 SG CYS 22 -2.306 -4.337 0.830 1.00 5.03 S ATOM 242 C CYS 22 -5.828 -4.539 -0.296 1.00 5.03 C ATOM 243 O CYS 22 -7.053 -4.518 -0.132 1.00 5.03 O ATOM 244 N ASP 23 -5.174 -5.465 -0.996 1.00 5.28 N ATOM 246 CA ASP 23 -5.790 -6.545 -1.769 1.00 5.28 C ATOM 247 CB ASP 23 -4.703 -7.270 -2.576 1.00 5.28 C ATOM 248 CG ASP 23 -3.492 -7.684 -1.724 1.00 5.28 C ATOM 249 OD1 ASP 23 -3.498 -8.812 -1.182 1.00 5.28 O ATOM 250 OD2 ASP 23 -2.535 -6.888 -1.614 1.00 5.28 O ATOM 251 C ASP 23 -6.699 -7.592 -1.127 1.00 5.28 C ATOM 252 O ASP 23 -6.249 -8.386 -0.288 1.00 5.28 O ATOM 253 N GLU 24 -7.998 -7.501 -1.444 1.00 6.12 N ATOM 255 CA GLU 24 -8.973 -8.491 -0.995 1.00 6.12 C ATOM 256 CB GLU 24 -10.382 -7.863 -0.831 1.00 6.12 C ATOM 257 CG GLU 24 -10.897 -6.906 -1.942 1.00 6.12 C ATOM 258 CD GLU 24 -10.646 -5.431 -1.641 1.00 6.12 C ATOM 259 OE1 GLU 24 -9.592 -4.908 -2.060 1.00 6.12 O ATOM 260 OE2 GLU 24 -11.505 -4.802 -0.987 1.00 6.12 O ATOM 261 C GLU 24 -8.960 -9.665 -2.008 1.00 6.12 C ATOM 262 O GLU 24 -8.653 -10.795 -1.618 1.00 6.12 O ATOM 263 N SER 25 -9.269 -9.378 -3.288 1.00 5.77 N ATOM 265 CA SER 25 -9.229 -10.386 -4.365 1.00 5.77 C ATOM 266 CB SER 25 -10.586 -10.387 -5.078 1.00 5.77 C ATOM 267 OG SER 25 -10.919 -9.070 -5.493 1.00 5.77 O ATOM 269 C SER 25 -8.101 -10.206 -5.411 1.00 5.77 C ATOM 270 O SER 25 -7.130 -10.970 -5.429 1.00 5.77 O ATOM 271 N ASN 26 -8.263 -9.169 -6.252 1.00 5.09 N ATOM 273 CA ASN 26 -7.334 -8.715 -7.314 1.00 5.09 C ATOM 274 CB ASN 26 -8.091 -8.085 -8.509 1.00 5.09 C ATOM 275 CG ASN 26 -9.148 -7.061 -8.089 1.00 5.09 C ATOM 276 OD1 ASN 26 -8.866 -5.867 -7.980 1.00 5.09 O ATOM 277 ND2 ASN 26 -10.374 -7.529 -7.866 1.00 5.09 N ATOM 280 C ASN 26 -6.243 -7.800 -6.729 1.00 5.09 C ATOM 281 O ASN 26 -6.566 -6.668 -6.364 1.00 5.09 O ATOM 282 N HIS 27 -4.966 -8.198 -6.806 1.00 5.31 N ATOM 284 CA HIS 27 -3.849 -7.452 -6.179 1.00 5.31 C ATOM 285 CG HIS 27 -2.197 -8.452 -7.857 1.00 5.31 C ATOM 286 CD2 HIS 27 -2.136 -9.588 -8.594 1.00 5.31 C ATOM 287 ND1 HIS 27 -1.848 -7.427 -8.711 1.00 5.31 N ATOM 289 CE1 HIS 27 -1.587 -7.920 -9.909 1.00 5.31 C ATOM 290 NE2 HIS 27 -1.756 -9.229 -9.863 1.00 5.31 N ATOM 292 C HIS 27 -3.616 -5.947 -6.466 1.00 5.31 C ATOM 293 O HIS 27 -2.628 -5.375 -5.978 1.00 5.31 O ATOM 294 CB HIS 27 -2.534 -8.228 -6.411 1.00 5.31 C ATOM 295 N CYS 28 -4.495 -5.320 -7.259 1.00 4.29 N ATOM 297 CA CYS 28 -4.392 -3.882 -7.524 1.00 4.29 C ATOM 298 CB CYS 28 -3.629 -3.583 -8.812 1.00 4.29 C ATOM 299 SG CYS 28 -1.864 -3.670 -8.523 1.00 4.29 S ATOM 300 C CYS 28 -5.608 -2.973 -7.389 1.00 4.29 C ATOM 301 O CYS 28 -6.582 -3.077 -8.144 1.00 4.29 O ATOM 302 N VAL 29 -5.512 -2.069 -6.412 1.00 4.06 N ATOM 304 CA VAL 29 -6.506 -1.028 -6.118 1.00 4.06 C ATOM 305 CB VAL 29 -7.316 -1.254 -4.796 1.00 4.06 C ATOM 306 CG1 VAL 29 -8.457 -0.237 -4.714 1.00 4.06 C ATOM 307 CG2 VAL 29 -7.886 -2.673 -4.727 1.00 4.06 C ATOM 308 C VAL 29 -5.601 0.193 -5.948 1.00 4.06 C ATOM 309 O VAL 29 -4.373 0.046 -5.863 1.00 4.06 O ATOM 310 N GLU 30 -6.187 1.389 -5.928 1.00 3.35 N ATOM 312 CA GLU 30 -5.383 2.582 -5.765 1.00 3.35 C ATOM 313 CB GLU 30 -5.616 3.571 -6.891 1.00 3.35 C ATOM 314 CG GLU 30 -4.857 3.145 -8.139 1.00 3.35 C ATOM 315 CD GLU 30 -5.054 4.102 -9.300 1.00 3.35 C ATOM 316 OE1 GLU 30 -6.001 3.895 -10.090 1.00 3.35 O ATOM 317 OE2 GLU 30 -4.261 5.059 -9.427 1.00 3.35 O ATOM 318 C GLU 30 -5.300 3.243 -4.402 1.00 3.35 C ATOM 319 O GLU 30 -6.301 3.470 -3.714 1.00 3.35 O ATOM 320 N VAL 31 -4.045 3.511 -4.040 1.00 2.53 N ATOM 322 CA VAL 31 -3.607 4.133 -2.793 1.00 2.53 C ATOM 323 CB VAL 31 -2.348 3.338 -2.204 1.00 2.53 C ATOM 324 CG1 VAL 31 -1.092 3.425 -3.118 1.00 2.53 C ATOM 325 CG2 VAL 31 -2.012 3.801 -0.825 1.00 2.53 C ATOM 326 C VAL 31 -3.218 5.577 -3.170 1.00 2.53 C ATOM 327 O VAL 31 -2.440 5.783 -4.121 1.00 2.53 O ATOM 328 N ARG 32 -3.791 6.568 -2.482 1.00 2.15 N ATOM 330 CA ARG 32 -3.416 7.939 -2.795 1.00 2.15 C ATOM 331 CB ARG 32 -4.607 8.782 -3.225 1.00 2.15 C ATOM 332 CG ARG 32 -4.541 9.088 -4.709 1.00 2.15 C ATOM 333 CD ARG 32 -5.724 9.936 -5.184 1.00 2.15 C ATOM 334 NE ARG 32 -5.681 11.310 -4.676 1.00 2.15 N ATOM 336 CZ ARG 32 -6.586 12.254 -4.936 1.00 2.15 C ATOM 337 NH1 ARG 32 -7.640 12.005 -5.709 1.00 2.15 N ATOM 340 NH2 ARG 32 -6.437 13.465 -4.415 1.00 2.15 N ATOM 343 C ARG 32 -2.573 8.640 -1.747 1.00 2.15 C ATOM 344 O ARG 32 -3.013 8.901 -0.625 1.00 2.15 O ATOM 345 N CYS 33 -1.315 8.862 -2.131 1.00 3.00 N ATOM 347 CA CYS 33 -0.312 9.540 -1.318 1.00 3.00 C ATOM 348 CB CYS 33 1.021 8.782 -1.281 1.00 3.00 C ATOM 349 SG CYS 33 1.788 8.399 -2.858 1.00 3.00 S ATOM 350 C CYS 33 -0.156 10.922 -1.920 1.00 3.00 C ATOM 351 O CYS 33 -0.143 11.088 -3.147 1.00 3.00 O ATOM 352 N SER 34 -0.045 11.901 -1.029 1.00 3.90 N ATOM 354 CA SER 34 0.061 13.316 -1.357 1.00 3.90 C ATOM 355 CB SER 34 0.008 14.092 -0.053 1.00 3.90 C ATOM 356 OG SER 34 0.934 13.519 0.846 1.00 3.90 O ATOM 358 C SER 34 1.290 13.764 -2.156 1.00 3.90 C ATOM 359 O SER 34 1.272 14.854 -2.719 1.00 3.90 O ATOM 360 N ASP 35 2.313 12.909 -2.273 1.00 4.33 N ATOM 362 CA ASP 35 3.532 13.301 -2.992 1.00 4.33 C ATOM 363 CB ASP 35 4.759 12.880 -2.153 1.00 4.33 C ATOM 364 CG ASP 35 6.062 13.500 -2.628 1.00 4.33 C ATOM 365 OD1 ASP 35 6.415 14.597 -2.141 1.00 4.33 O ATOM 366 OD2 ASP 35 6.748 12.891 -3.477 1.00 4.33 O ATOM 367 C ASP 35 3.656 12.793 -4.438 1.00 4.33 C ATOM 368 O ASP 35 3.362 13.542 -5.372 1.00 4.33 O ATOM 369 N THR 36 4.030 11.520 -4.610 1.00 4.04 N ATOM 371 CA THR 36 4.225 10.909 -5.931 1.00 4.04 C ATOM 372 CB THR 36 5.761 10.825 -6.305 1.00 4.04 C ATOM 373 OG1 THR 36 5.948 10.026 -7.482 1.00 4.04 O ATOM 375 CG2 THR 36 6.603 10.277 -5.152 1.00 4.04 C ATOM 376 C THR 36 3.544 9.549 -6.078 1.00 4.04 C ATOM 377 O THR 36 3.884 8.617 -5.355 1.00 4.04 O ATOM 378 N LYS 37 2.750 9.377 -7.134 1.00 3.71 N ATOM 380 CA LYS 37 2.043 8.112 -7.362 1.00 3.71 C ATOM 381 CB LYS 37 0.830 8.303 -8.289 1.00 3.71 C ATOM 382 CG LYS 37 1.054 9.171 -9.529 1.00 3.71 C ATOM 383 CD LYS 37 -0.217 9.283 -10.364 1.00 3.71 C ATOM 384 CE LYS 37 -0.017 10.146 -11.607 1.00 3.71 C ATOM 385 NZ LYS 37 0.883 9.527 -12.626 1.00 3.71 N ATOM 389 C LYS 37 3.001 7.037 -7.894 1.00 3.71 C ATOM 390 O LYS 37 3.755 7.279 -8.836 1.00 3.71 O ATOM 391 N TYR 38 3.057 5.917 -7.172 1.00 3.15 N ATOM 393 CA TYR 38 3.919 4.782 -7.502 1.00 3.15 C ATOM 394 CB TYR 38 5.002 4.608 -6.420 1.00 3.15 C ATOM 395 CG TYR 38 6.285 3.928 -6.888 1.00 3.15 C ATOM 396 CD1 TYR 38 6.506 2.547 -6.654 1.00 3.15 C ATOM 397 CE1 TYR 38 7.721 1.916 -7.046 1.00 3.15 C ATOM 398 CD2 TYR 38 7.317 4.662 -7.527 1.00 3.15 C ATOM 399 CE2 TYR 38 8.533 4.039 -7.922 1.00 3.15 C ATOM 400 CZ TYR 38 8.724 2.669 -7.677 1.00 3.15 C ATOM 401 OH TYR 38 9.900 2.065 -8.059 1.00 3.15 O ATOM 403 C TYR 38 3.057 3.525 -7.598 1.00 3.15 C ATOM 404 O TYR 38 1.844 3.606 -7.467 1.00 3.15 O ATOM 405 N THR 39 3.675 2.390 -7.932 1.00 2.17 N ATOM 407 CA THR 39 2.977 1.105 -8.037 1.00 2.17 C ATOM 408 CB THR 39 2.857 0.610 -9.533 1.00 2.17 C ATOM 409 OG1 THR 39 2.617 -0.804 -9.579 1.00 2.17 O ATOM 411 CG2 THR 39 4.103 0.975 -10.367 1.00 2.17 C ATOM 412 C THR 39 3.595 0.058 -7.093 1.00 2.17 C ATOM 413 O THR 39 4.816 -0.088 -7.048 1.00 2.17 O ATOM 414 N LEU 40 2.734 -0.644 -6.343 1.00 3.27 N ATOM 416 CA LEU 40 3.127 -1.674 -5.360 1.00 3.27 C ATOM 417 CB LEU 40 2.134 -1.644 -4.178 1.00 3.27 C ATOM 418 CG LEU 40 2.376 -2.298 -2.802 1.00 3.27 C ATOM 419 CD1 LEU 40 2.996 -1.316 -1.794 1.00 3.27 C ATOM 420 CD2 LEU 40 1.045 -2.800 -2.266 1.00 3.27 C ATOM 421 C LEU 40 3.205 -3.085 -5.979 1.00 3.27 C ATOM 422 O LEU 40 2.765 -3.291 -7.113 1.00 3.27 O ATOM 423 N CYS 41 3.764 -4.024 -5.202 1.00 4.68 N ATOM 425 CA CYS 41 3.945 -5.436 -5.569 1.00 4.68 C ATOM 426 CB CYS 41 5.367 -5.872 -5.207 1.00 4.68 C ATOM 427 SG CYS 41 6.631 -4.692 -5.734 1.00 4.68 S ATOM 428 C CYS 41 2.921 -6.305 -4.836 1.00 4.68 C ATOM 429 O CYS 41 2.420 -5.842 -3.788 1.00 4.68 O ATOM 430 OXT CYS 41 2.618 -7.416 -5.323 1.00 4.68 O TER END