####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 41 ( 335), selected 41 , name T0955TS498_4 # Molecule2: number of CA atoms 41 ( 665), selected 41 , name T0955.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS498_4.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 37 5 - 41 4.95 6.20 LCS_AVERAGE: 86.91 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 22 16 - 37 1.98 9.55 LONGEST_CONTINUOUS_SEGMENT: 22 17 - 38 2.00 9.70 LCS_AVERAGE: 48.30 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 12 5 - 16 0.96 9.03 LONGEST_CONTINUOUS_SEGMENT: 12 6 - 17 0.98 8.34 LONGEST_CONTINUOUS_SEGMENT: 12 7 - 18 0.97 7.91 LCS_AVERAGE: 20.46 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 41 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 1 S 1 3 17 23 0 5 11 14 16 18 19 22 24 25 25 27 28 30 32 32 35 36 38 39 LCS_GDT Q 2 Q 2 4 17 23 0 3 5 7 10 17 18 21 23 25 25 26 28 30 32 32 35 35 38 39 LCS_GDT E 3 E 3 4 17 23 3 3 5 7 17 19 20 22 24 25 26 28 31 33 35 37 37 38 38 39 LCS_GDT T 4 T 4 4 17 23 3 3 6 11 14 18 20 22 24 25 26 28 28 33 34 37 37 38 38 39 LCS_GDT R 5 R 5 12 17 37 3 6 11 13 16 18 19 22 24 25 25 27 28 30 32 34 35 38 38 39 LCS_GDT K 6 K 6 12 17 37 3 7 12 15 16 19 20 22 24 25 26 28 28 31 34 37 37 38 38 39 LCS_GDT K 7 K 7 12 17 37 4 10 12 15 17 19 20 22 24 25 26 30 32 33 35 37 37 38 38 39 LCS_GDT C 8 C 8 12 17 37 7 10 12 15 17 19 20 22 24 25 26 31 32 33 35 37 37 38 38 39 LCS_GDT T 9 T 9 12 17 37 7 10 12 15 17 19 20 22 24 27 30 31 32 33 35 37 37 38 38 39 LCS_GDT E 10 E 10 12 17 37 7 10 12 15 17 19 20 22 24 27 30 31 32 33 35 37 37 38 38 39 LCS_GDT M 11 M 11 12 17 37 7 10 12 15 17 19 20 24 28 29 30 31 32 33 35 37 37 38 38 39 LCS_GDT K 12 K 12 12 17 37 7 10 12 15 17 19 26 27 28 29 30 31 32 33 35 37 37 38 38 39 LCS_GDT K 13 K 13 12 17 37 6 10 12 15 17 19 26 27 28 29 30 31 32 33 35 37 37 38 38 39 LCS_GDT K 14 K 14 12 20 37 7 10 12 15 17 19 20 27 28 29 30 31 32 33 35 37 37 38 38 39 LCS_GDT F 15 F 15 12 20 37 7 10 12 17 20 25 26 27 28 29 30 31 32 33 35 37 37 38 38 39 LCS_GDT K 16 K 16 12 22 37 4 10 13 17 21 25 26 27 28 29 30 31 32 33 35 37 37 38 38 39 LCS_GDT N 17 N 17 12 22 37 4 11 14 18 21 25 26 27 28 29 30 31 32 33 35 37 37 38 38 39 LCS_GDT C 18 C 18 12 22 37 7 12 14 18 21 25 26 27 28 29 30 31 32 33 35 37 37 38 38 39 LCS_GDT E 19 E 19 8 22 37 7 12 14 18 21 25 26 27 28 29 30 31 32 33 35 37 37 38 38 39 LCS_GDT V 20 V 20 8 22 37 4 12 14 18 21 25 26 27 28 29 30 31 32 33 35 37 37 38 38 39 LCS_GDT R 21 R 21 8 22 37 7 12 14 18 21 25 26 27 28 29 30 31 32 33 35 37 37 38 38 39 LCS_GDT C 22 C 22 8 22 37 4 12 14 18 21 25 26 27 28 29 30 31 32 33 35 37 37 38 38 39 LCS_GDT D 23 D 23 8 22 37 7 12 14 18 21 25 26 27 28 29 30 31 32 33 35 37 37 38 38 39 LCS_GDT E 24 E 24 4 22 37 3 4 7 15 20 23 26 27 27 29 30 31 31 32 34 34 35 36 38 38 LCS_GDT S 25 S 25 5 22 37 3 6 13 17 20 25 26 27 28 29 30 31 32 33 35 37 37 38 38 39 LCS_GDT N 26 N 26 5 22 37 2 5 8 14 18 25 26 27 28 29 30 31 32 33 35 37 37 38 38 39 LCS_GDT H 27 H 27 7 22 37 3 9 14 18 21 25 26 27 28 29 30 31 32 33 35 37 37 38 38 39 LCS_GDT C 28 C 28 8 22 37 7 12 14 18 21 25 26 27 28 29 30 31 32 33 35 37 37 38 38 39 LCS_GDT V 29 V 29 8 22 37 6 12 14 18 21 25 26 27 28 29 30 31 32 33 35 37 37 38 38 39 LCS_GDT E 30 E 30 8 22 37 6 12 14 18 21 25 26 27 28 29 30 31 32 33 35 37 37 38 38 39 LCS_GDT V 31 V 31 8 22 37 7 12 14 18 21 25 26 27 28 29 30 31 32 33 35 37 37 38 38 39 LCS_GDT R 32 R 32 8 22 37 7 12 14 18 21 25 26 27 28 29 30 31 32 33 35 37 37 38 38 39 LCS_GDT C 33 C 33 8 22 37 3 12 14 18 21 25 26 27 28 29 30 31 32 33 35 37 37 38 38 39 LCS_GDT S 34 S 34 8 22 37 3 8 13 18 21 25 26 27 28 29 30 31 32 33 35 37 37 38 38 39 LCS_GDT D 35 D 35 8 22 37 3 7 8 13 21 22 26 27 27 27 30 31 31 33 35 37 37 38 38 39 LCS_GDT T 36 T 36 6 22 37 4 6 13 18 21 25 26 27 28 29 30 31 32 33 35 37 37 38 38 39 LCS_GDT K 37 K 37 6 22 37 4 6 10 18 21 25 26 27 28 29 30 31 32 33 35 37 37 38 38 39 LCS_GDT Y 38 Y 38 6 22 37 4 7 12 15 21 25 26 27 28 29 30 31 32 33 35 37 37 38 38 39 LCS_GDT T 39 T 39 6 15 37 4 7 12 15 21 25 26 27 28 29 30 31 32 33 35 37 37 38 38 39 LCS_GDT L 40 L 40 6 15 37 4 7 11 18 21 25 26 27 28 29 30 31 32 33 35 37 37 38 38 39 LCS_GDT C 41 C 41 6 15 37 3 7 10 13 19 25 26 27 28 29 30 31 32 33 35 37 37 38 38 39 LCS_AVERAGE LCS_A: 51.89 ( 20.46 48.30 86.91 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 7 12 14 18 21 25 26 27 28 29 30 31 32 33 35 37 37 38 38 39 GDT PERCENT_AT 17.07 29.27 34.15 43.90 51.22 60.98 63.41 65.85 68.29 70.73 73.17 75.61 78.05 80.49 85.37 90.24 90.24 92.68 92.68 95.12 GDT RMS_LOCAL 0.28 0.53 0.86 1.34 1.64 2.04 2.10 2.21 2.67 2.74 2.86 3.05 3.72 3.84 4.34 4.76 4.76 4.99 4.94 5.33 GDT RMS_ALL_AT 9.00 9.46 9.09 9.58 9.26 8.79 8.98 9.11 7.88 8.11 8.22 7.98 6.72 6.81 6.26 5.98 5.98 5.89 6.10 5.83 # Checking swapping # possible swapping detected: E 3 E 3 # possible swapping detected: E 19 E 19 # possible swapping detected: D 23 D 23 # possible swapping detected: D 35 D 35 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA S 1 S 1 24.599 0 0.181 0.295 25.458 0.000 0.000 25.458 LGA Q 2 Q 2 24.080 0 0.300 0.963 31.422 0.000 0.000 31.422 LGA E 3 E 3 16.633 0 0.166 1.008 19.233 0.000 0.000 15.747 LGA T 4 T 4 15.031 0 0.098 0.109 18.062 0.000 0.000 15.327 LGA R 5 R 5 19.042 0 0.132 0.801 30.236 0.000 0.000 30.236 LGA K 6 K 6 18.429 0 0.112 1.176 20.063 0.000 0.000 20.063 LGA K 7 K 7 14.042 0 0.070 0.627 15.729 0.000 0.000 14.023 LGA C 8 C 8 12.110 0 0.076 0.088 13.053 0.000 0.000 12.444 LGA T 9 T 9 12.861 0 0.056 0.854 16.854 0.000 0.000 16.854 LGA E 10 E 10 12.176 0 0.026 0.740 14.330 0.000 0.000 14.140 LGA M 11 M 11 8.360 0 0.110 1.531 9.918 0.000 6.136 2.277 LGA K 12 K 12 7.087 0 0.020 0.629 11.427 0.000 0.000 11.427 LGA K 13 K 13 7.467 0 0.039 0.331 12.624 0.000 0.000 12.624 LGA K 14 K 14 6.948 0 0.015 0.502 14.075 0.000 0.000 14.075 LGA F 15 F 15 3.053 0 0.387 0.571 5.481 21.364 15.041 5.481 LGA K 16 K 16 2.278 0 0.050 1.045 4.541 49.091 32.929 4.541 LGA N 17 N 17 0.723 0 0.195 0.235 1.879 77.727 71.818 0.972 LGA C 18 C 18 1.139 0 0.057 0.727 3.831 69.545 59.091 3.831 LGA E 19 E 19 1.469 0 0.153 0.966 3.280 69.545 51.515 2.911 LGA V 20 V 20 1.554 0 0.032 0.247 1.850 50.909 52.987 1.244 LGA R 21 R 21 1.361 0 0.164 1.200 5.459 61.818 40.165 2.779 LGA C 22 C 22 1.187 0 0.131 0.544 4.173 61.818 50.606 4.173 LGA D 23 D 23 1.258 0 0.079 0.227 2.400 61.818 51.591 2.341 LGA E 24 E 24 3.056 0 0.121 0.920 5.060 23.636 15.758 5.060 LGA S 25 S 25 3.122 0 0.111 0.566 4.722 17.273 17.879 2.720 LGA N 26 N 26 3.473 0 0.432 0.941 8.055 17.273 9.318 5.711 LGA H 27 H 27 0.815 0 0.176 0.272 4.556 70.000 39.455 4.556 LGA C 28 C 28 2.310 0 0.146 0.795 3.975 41.364 33.939 3.975 LGA V 29 V 29 2.391 0 0.070 1.153 3.283 32.727 29.351 3.283 LGA E 30 E 30 2.370 0 0.139 0.406 2.994 35.455 33.333 2.447 LGA V 31 V 31 1.843 0 0.039 1.005 2.759 54.545 45.974 2.759 LGA R 32 R 32 1.273 0 0.086 1.086 5.079 61.818 46.942 4.508 LGA C 33 C 33 0.872 0 0.506 1.102 2.443 66.818 63.939 1.930 LGA S 34 S 34 1.905 0 0.280 0.678 3.779 35.000 36.061 2.488 LGA D 35 D 35 3.852 0 0.237 0.930 5.114 18.636 15.227 3.248 LGA T 36 T 36 1.444 0 0.084 1.263 3.133 46.364 41.299 2.963 LGA K 37 K 37 1.976 0 0.050 1.119 5.168 41.818 24.242 5.168 LGA Y 38 Y 38 2.573 0 0.121 0.506 2.828 30.000 42.576 2.828 LGA T 39 T 39 2.949 0 0.189 1.013 5.938 23.182 14.805 5.938 LGA L 40 L 40 1.602 0 0.286 0.675 3.597 37.727 40.455 2.170 LGA C 41 C 41 3.070 0 0.477 0.949 6.625 25.455 20.000 6.625 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 41 164 164 100.00 335 335 100.00 41 41 SUMMARY(RMSD_GDC): 5.825 5.715 6.568 29.335 24.450 15.166 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 41 41 4.0 27 2.21 57.317 56.524 1.169 LGA_LOCAL RMSD: 2.209 Number of atoms: 27 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 9.111 Number of assigned atoms: 41 Std_ASGN_ATOMS RMSD: 5.825 Standard rmsd on all 41 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.939548 * X + 0.265107 * Y + 0.216722 * Z + 4.273063 Y_new = -0.277292 * X + -0.960397 * Y + -0.027319 * Z + 2.427652 Z_new = 0.200897 * X + -0.085763 * Y + 0.975851 * Z + -2.627802 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -2.854607 -0.202274 -0.087660 [DEG: -163.5569 -11.5894 -5.0226 ] ZXZ: 1.445401 0.220213 1.974276 [DEG: 82.8154 12.6173 113.1177 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0955TS498_4 REMARK 2: T0955.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS498_4.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 41 41 4.0 27 2.21 56.524 5.82 REMARK ---------------------------------------------------------- MOLECULE T0955TS498_4 PFRMAT TS TARGET T0955 MODEL 4 PARENT N/A ATOM 1 CB SER 1 20.786 -7.660 -8.354 1.00 2.84 C ATOM 2 OG SER 1 21.716 -8.722 -8.487 1.00 2.84 O ATOM 4 C SER 1 20.523 -5.142 -7.860 1.00 2.84 C ATOM 5 O SER 1 20.409 -4.504 -6.807 1.00 2.84 O ATOM 8 N SER 1 22.150 -6.576 -6.592 1.00 2.84 N ATOM 10 CA SER 1 21.482 -6.367 -7.907 1.00 2.84 C ATOM 11 N GLN 2 19.849 -4.838 -8.980 1.00 3.82 N ATOM 13 CA GLN 2 18.967 -3.654 -9.151 1.00 3.82 C ATOM 14 CB GLN 2 18.950 -3.262 -10.634 1.00 3.82 C ATOM 15 CG GLN 2 20.154 -2.444 -11.069 1.00 3.82 C ATOM 16 CD GLN 2 20.107 -2.073 -12.539 1.00 3.82 C ATOM 17 OE1 GLN 2 19.584 -1.022 -12.909 1.00 3.82 O ATOM 18 NE2 GLN 2 20.659 -2.936 -13.386 1.00 3.82 N ATOM 21 C GLN 2 17.558 -3.325 -8.569 1.00 3.82 C ATOM 22 O GLN 2 17.396 -2.218 -8.035 1.00 3.82 O ATOM 23 N GLU 3 16.569 -4.233 -8.632 1.00 4.03 N ATOM 25 CA GLU 3 15.169 -3.923 -8.202 1.00 4.03 C ATOM 26 CB GLU 3 14.160 -4.789 -8.994 1.00 4.03 C ATOM 27 CG GLU 3 14.312 -6.314 -8.868 1.00 4.03 C ATOM 28 CD GLU 3 13.280 -7.074 -9.679 1.00 4.03 C ATOM 29 OE1 GLU 3 13.554 -7.377 -10.860 1.00 4.03 O ATOM 30 OE2 GLU 3 12.194 -7.370 -9.135 1.00 4.03 O ATOM 31 C GLU 3 14.592 -3.672 -6.776 1.00 4.03 C ATOM 32 O GLU 3 13.878 -2.674 -6.604 1.00 4.03 O ATOM 33 N THR 4 14.889 -4.515 -5.774 1.00 3.28 N ATOM 35 CA THR 4 14.300 -4.370 -4.414 1.00 3.28 C ATOM 36 CB THR 4 14.172 -5.772 -3.680 1.00 3.28 C ATOM 37 OG1 THR 4 13.401 -5.630 -2.479 1.00 3.28 O ATOM 39 CG2 THR 4 15.540 -6.374 -3.339 1.00 3.28 C ATOM 40 C THR 4 14.733 -3.258 -3.402 1.00 3.28 C ATOM 41 O THR 4 13.858 -2.592 -2.829 1.00 3.28 O ATOM 42 N ARG 5 16.044 -3.062 -3.203 1.00 2.12 N ATOM 44 CA ARG 5 16.595 -2.102 -2.211 1.00 2.12 C ATOM 45 CB ARG 5 18.038 -2.493 -1.857 1.00 2.12 C ATOM 46 CG ARG 5 18.171 -3.790 -1.053 1.00 2.12 C ATOM 47 CD ARG 5 19.627 -4.126 -0.731 1.00 2.12 C ATOM 48 NE ARG 5 20.396 -4.519 -1.917 1.00 2.12 N ATOM 50 CZ ARG 5 21.684 -4.862 -1.917 1.00 2.12 C ATOM 51 NH1 ARG 5 22.270 -5.200 -3.058 1.00 2.12 N ATOM 54 NH2 ARG 5 22.395 -4.872 -0.793 1.00 2.12 N ATOM 57 C ARG 5 16.512 -0.546 -2.268 1.00 2.12 C ATOM 58 O ARG 5 16.082 0.064 -1.275 1.00 2.12 O ATOM 59 N LYS 6 16.922 0.083 -3.382 1.00 1.80 N ATOM 61 CA LYS 6 16.953 1.565 -3.529 1.00 1.80 C ATOM 62 CB LYS 6 18.010 1.977 -4.559 1.00 1.80 C ATOM 63 CG LYS 6 19.448 1.833 -4.070 1.00 1.80 C ATOM 64 CD LYS 6 20.441 2.258 -5.139 1.00 1.80 C ATOM 65 CE LYS 6 21.874 2.114 -4.651 1.00 1.80 C ATOM 66 NZ LYS 6 22.859 2.526 -5.688 1.00 1.80 N ATOM 70 C LYS 6 15.688 2.448 -3.708 1.00 1.80 C ATOM 71 O LYS 6 15.542 3.453 -2.995 1.00 1.80 O ATOM 72 N LYS 7 14.807 2.083 -4.653 1.00 1.77 N ATOM 74 CA LYS 7 13.562 2.830 -4.987 1.00 1.77 C ATOM 75 CB LYS 7 13.066 2.408 -6.377 1.00 1.77 C ATOM 76 CG LYS 7 13.904 2.946 -7.531 1.00 1.77 C ATOM 77 CD LYS 7 13.355 2.490 -8.873 1.00 1.77 C ATOM 78 CE LYS 7 14.191 3.027 -10.023 1.00 1.77 C ATOM 79 NZ LYS 7 13.664 2.588 -11.345 1.00 1.77 N ATOM 83 C LYS 7 12.388 2.800 -3.970 1.00 1.77 C ATOM 84 O LYS 7 11.691 3.812 -3.806 1.00 1.77 O ATOM 85 N CYS 8 12.196 1.652 -3.298 1.00 1.76 N ATOM 87 CA CYS 8 11.119 1.395 -2.298 1.00 1.76 C ATOM 88 CB CYS 8 11.074 -0.119 -2.022 1.00 1.76 C ATOM 89 SG CYS 8 9.900 -0.750 -0.795 1.00 1.76 S ATOM 90 C CYS 8 11.190 2.185 -0.973 1.00 1.76 C ATOM 91 O CYS 8 10.169 2.703 -0.505 1.00 1.76 O ATOM 92 N THR 9 12.376 2.214 -0.350 1.00 1.75 N ATOM 94 CA THR 9 12.625 2.928 0.925 1.00 1.75 C ATOM 95 CB THR 9 13.990 2.518 1.541 1.00 1.75 C ATOM 96 OG1 THR 9 14.980 2.429 0.510 1.00 1.75 O ATOM 98 CG2 THR 9 13.876 1.188 2.274 1.00 1.75 C ATOM 99 C THR 9 12.543 4.466 0.859 1.00 1.75 C ATOM 100 O THR 9 12.025 5.097 1.793 1.00 1.75 O ATOM 101 N GLU 10 13.022 5.047 -0.255 1.00 1.52 N ATOM 103 CA GLU 10 13.028 6.508 -0.490 1.00 1.52 C ATOM 104 CB GLU 10 13.831 6.857 -1.746 1.00 1.52 C ATOM 105 CG GLU 10 15.329 6.896 -1.531 1.00 1.52 C ATOM 106 CD GLU 10 16.095 7.244 -2.795 1.00 1.52 C ATOM 107 OE1 GLU 10 16.462 6.316 -3.546 1.00 1.52 O ATOM 108 OE2 GLU 10 16.334 8.447 -3.036 1.00 1.52 O ATOM 109 C GLU 10 11.602 7.007 -0.643 1.00 1.52 C ATOM 110 O GLU 10 11.257 8.091 -0.151 1.00 1.52 O ATOM 111 N MET 11 10.786 6.194 -1.327 1.00 1.32 N ATOM 113 CA MET 11 9.376 6.499 -1.552 1.00 1.32 C ATOM 114 CG MET 11 8.531 4.212 -2.565 1.00 1.32 C ATOM 115 SD MET 11 7.001 3.833 -1.676 1.00 1.32 S ATOM 116 CE MET 11 7.192 2.075 -1.393 1.00 1.32 C ATOM 117 C MET 11 8.523 6.395 -0.269 1.00 1.32 C ATOM 118 O MET 11 7.778 7.327 0.051 1.00 1.32 O ATOM 119 CB MET 11 8.806 5.694 -2.741 1.00 1.32 C ATOM 120 N LYS 12 8.754 5.320 0.504 1.00 1.44 N ATOM 122 CA LYS 12 8.051 5.017 1.772 1.00 1.44 C ATOM 123 CB LYS 12 8.619 3.713 2.362 1.00 1.44 C ATOM 124 CG LYS 12 8.067 3.264 3.719 1.00 1.44 C ATOM 125 CD LYS 12 8.715 1.968 4.176 1.00 1.44 C ATOM 126 CE LYS 12 8.168 1.522 5.523 1.00 1.44 C ATOM 127 NZ LYS 12 8.793 0.252 5.984 1.00 1.44 N ATOM 131 C LYS 12 8.180 6.181 2.785 1.00 1.44 C ATOM 132 O LYS 12 7.231 6.463 3.537 1.00 1.44 O ATOM 133 N LYS 13 9.346 6.839 2.772 1.00 1.40 N ATOM 135 CA LYS 13 9.662 7.979 3.655 1.00 1.40 C ATOM 136 CB LYS 13 11.162 8.285 3.621 1.00 1.40 C ATOM 137 CG LYS 13 11.999 7.400 4.519 1.00 1.40 C ATOM 138 CD LYS 13 13.479 7.763 4.432 1.00 1.40 C ATOM 139 CE LYS 13 14.343 6.881 5.332 1.00 1.40 C ATOM 140 NZ LYS 13 14.125 7.121 6.791 1.00 1.40 N ATOM 144 C LYS 13 8.881 9.272 3.366 1.00 1.40 C ATOM 145 O LYS 13 8.330 9.893 4.289 1.00 1.40 O ATOM 146 N LYS 14 8.855 9.656 2.082 1.00 1.59 N ATOM 148 CA LYS 14 8.180 10.862 1.567 1.00 1.59 C ATOM 149 CB LYS 14 8.688 11.175 0.159 1.00 1.59 C ATOM 150 CG LYS 14 10.186 11.432 0.068 1.00 1.59 C ATOM 151 CD LYS 14 10.611 11.735 -1.366 1.00 1.59 C ATOM 152 CE LYS 14 12.111 11.997 -1.479 1.00 1.59 C ATOM 153 NZ LYS 14 12.547 13.269 -0.829 1.00 1.59 N ATOM 157 C LYS 14 6.656 10.693 1.557 1.00 1.59 C ATOM 158 O LYS 14 5.895 11.656 1.744 1.00 1.59 O ATOM 159 N PHE 15 6.261 9.435 1.350 1.00 1.53 N ATOM 161 CA PHE 15 4.879 8.957 1.258 1.00 1.53 C ATOM 162 CB PHE 15 4.787 7.780 0.272 1.00 1.53 C ATOM 163 CG PHE 15 4.932 8.181 -1.186 1.00 1.53 C ATOM 164 CD1 PHE 15 5.738 7.424 -2.054 1.00 1.53 C ATOM 165 CD2 PHE 15 4.275 9.323 -1.715 1.00 1.53 C ATOM 166 CE1 PHE 15 5.900 7.786 -3.421 1.00 1.53 C ATOM 167 CE2 PHE 15 4.426 9.698 -3.077 1.00 1.53 C ATOM 168 CZ PHE 15 5.243 8.927 -3.932 1.00 1.53 C ATOM 169 C PHE 15 3.976 8.705 2.474 1.00 1.53 C ATOM 170 O PHE 15 2.752 8.643 2.306 1.00 1.53 O ATOM 171 N LYS 16 4.539 8.704 3.692 1.00 1.79 N ATOM 173 CA LYS 16 3.798 8.366 4.940 1.00 1.79 C ATOM 174 CB LYS 16 4.684 8.631 6.168 1.00 1.79 C ATOM 175 CG LYS 16 5.107 10.092 6.387 1.00 1.79 C ATOM 176 CD LYS 16 5.981 10.236 7.629 1.00 1.79 C ATOM 177 CE LYS 16 6.413 11.682 7.866 1.00 1.79 C ATOM 178 NZ LYS 16 5.290 12.585 8.260 1.00 1.79 N ATOM 182 C LYS 16 2.417 9.026 5.169 1.00 1.79 C ATOM 183 O LYS 16 1.608 8.547 5.983 1.00 1.79 O ATOM 184 N ASN 17 2.161 10.094 4.410 1.00 1.97 N ATOM 186 CA ASN 17 0.908 10.855 4.451 1.00 1.97 C ATOM 187 CB ASN 17 1.204 12.314 4.087 1.00 1.97 C ATOM 188 CG ASN 17 2.258 12.943 4.994 1.00 1.97 C ATOM 189 OD1 ASN 17 1.934 13.534 6.027 1.00 1.97 O ATOM 190 ND2 ASN 17 3.524 12.834 4.599 1.00 1.97 N ATOM 193 C ASN 17 -0.120 10.231 3.490 1.00 1.97 C ATOM 194 O ASN 17 -1.177 10.810 3.201 1.00 1.97 O ATOM 195 N CYS 18 0.217 9.016 3.050 1.00 2.28 N ATOM 197 CA CYS 18 -0.555 8.195 2.119 1.00 2.28 C ATOM 198 CB CYS 18 0.384 7.468 1.176 1.00 2.28 C ATOM 199 SG CYS 18 -0.368 6.987 -0.346 1.00 2.28 S ATOM 200 C CYS 18 -1.529 7.187 2.722 1.00 2.28 C ATOM 201 O CYS 18 -1.364 6.719 3.856 1.00 2.28 O ATOM 202 N GLU 19 -2.571 6.908 1.939 1.00 3.12 N ATOM 204 CA GLU 19 -3.635 5.968 2.270 1.00 3.12 C ATOM 205 CB GLU 19 -4.983 6.558 1.846 1.00 3.12 C ATOM 206 CG GLU 19 -5.082 8.068 1.994 1.00 3.12 C ATOM 207 CD GLU 19 -6.432 8.612 1.563 1.00 3.12 C ATOM 208 OE1 GLU 19 -7.339 8.702 2.418 1.00 3.12 O ATOM 209 OE2 GLU 19 -6.584 8.954 0.371 1.00 3.12 O ATOM 210 C GLU 19 -3.359 4.674 1.486 1.00 3.12 C ATOM 211 O GLU 19 -3.442 4.675 0.256 1.00 3.12 O ATOM 212 N VAL 20 -2.975 3.598 2.189 1.00 3.81 N ATOM 214 CA VAL 20 -2.671 2.300 1.558 1.00 3.81 C ATOM 215 CB VAL 20 -1.338 1.641 2.102 1.00 3.81 C ATOM 216 CG1 VAL 20 -0.699 0.771 1.026 1.00 3.81 C ATOM 217 CG2 VAL 20 -0.344 2.702 2.584 1.00 3.81 C ATOM 218 C VAL 20 -3.859 1.324 1.667 1.00 3.81 C ATOM 219 O VAL 20 -4.202 0.856 2.763 1.00 3.81 O ATOM 220 N ARG 21 -4.494 1.077 0.514 1.00 4.43 N ATOM 222 CA ARG 21 -5.639 0.165 0.380 1.00 4.43 C ATOM 223 CB ARG 21 -6.752 0.793 -0.473 1.00 4.43 C ATOM 224 CG ARG 21 -7.653 1.758 0.267 1.00 4.43 C ATOM 225 CD ARG 21 -8.737 2.347 -0.633 1.00 4.43 C ATOM 226 NE ARG 21 -8.204 3.277 -1.635 1.00 4.43 N ATOM 228 CZ ARG 21 -8.933 3.928 -2.543 1.00 4.43 C ATOM 229 NH1 ARG 21 -8.333 4.744 -3.398 1.00 4.43 N ATOM 232 NH2 ARG 21 -10.252 3.774 -2.608 1.00 4.43 N ATOM 235 C ARG 21 -5.195 -1.169 -0.234 1.00 4.43 C ATOM 236 O ARG 21 -5.136 -1.306 -1.466 1.00 4.43 O ATOM 237 N CYS 22 -4.860 -2.138 0.629 1.00 4.55 N ATOM 239 CA CYS 22 -4.436 -3.478 0.200 1.00 4.55 C ATOM 240 CB CYS 22 -3.476 -4.106 1.218 1.00 4.55 C ATOM 241 SG CYS 22 -1.846 -4.508 0.557 1.00 4.55 S ATOM 242 C CYS 22 -5.713 -4.316 0.049 1.00 4.55 C ATOM 243 O CYS 22 -6.435 -4.548 1.031 1.00 4.55 O ATOM 244 N ASP 23 -6.007 -4.705 -1.199 1.00 5.60 N ATOM 246 CA ASP 23 -7.198 -5.485 -1.565 1.00 5.60 C ATOM 247 CB ASP 23 -7.338 -5.610 -3.091 1.00 5.60 C ATOM 248 CG ASP 23 -8.252 -4.544 -3.690 1.00 5.60 C ATOM 249 OD1 ASP 23 -9.457 -4.825 -3.870 1.00 5.60 O ATOM 250 OD2 ASP 23 -7.768 -3.431 -3.993 1.00 5.60 O ATOM 251 C ASP 23 -7.248 -6.854 -0.904 1.00 5.60 C ATOM 252 O ASP 23 -6.222 -7.371 -0.443 1.00 5.60 O ATOM 253 N GLU 24 -8.454 -7.419 -0.873 1.00 6.16 N ATOM 255 CA GLU 24 -8.752 -8.702 -0.242 1.00 6.16 C ATOM 256 CB GLU 24 -10.266 -8.835 -0.066 1.00 6.16 C ATOM 257 CG GLU 24 -10.918 -7.655 0.654 1.00 6.16 C ATOM 258 CD GLU 24 -12.418 -7.821 0.812 1.00 6.16 C ATOM 259 OE1 GLU 24 -12.851 -8.386 1.838 1.00 6.16 O ATOM 260 OE2 GLU 24 -13.165 -7.383 -0.090 1.00 6.16 O ATOM 261 C GLU 24 -8.190 -9.962 -0.907 1.00 6.16 C ATOM 262 O GLU 24 -7.539 -10.759 -0.222 1.00 6.16 O ATOM 263 N SER 25 -8.395 -10.117 -2.223 1.00 5.67 N ATOM 265 CA SER 25 -7.929 -11.315 -2.928 1.00 5.67 C ATOM 266 CB SER 25 -9.059 -11.838 -3.824 1.00 5.67 C ATOM 267 OG SER 25 -9.485 -10.842 -4.741 1.00 5.67 O ATOM 269 C SER 25 -6.617 -11.333 -3.726 1.00 5.67 C ATOM 270 O SER 25 -5.696 -12.053 -3.326 1.00 5.67 O ATOM 271 N ASN 26 -6.492 -10.531 -4.798 1.00 5.00 N ATOM 273 CA ASN 26 -5.265 -10.578 -5.616 1.00 5.00 C ATOM 274 CB ASN 26 -5.616 -10.214 -7.074 1.00 5.00 C ATOM 275 CG ASN 26 -6.924 -10.829 -7.545 1.00 5.00 C ATOM 276 OD1 ASN 26 -7.990 -10.225 -7.413 1.00 5.00 O ATOM 277 ND2 ASN 26 -6.846 -12.029 -8.115 1.00 5.00 N ATOM 280 C ASN 26 -3.998 -9.812 -5.177 1.00 5.00 C ATOM 281 O ASN 26 -3.392 -10.162 -4.156 1.00 5.00 O ATOM 282 N HIS 27 -3.603 -8.790 -5.959 1.00 4.96 N ATOM 284 CA HIS 27 -2.444 -7.927 -5.690 1.00 4.96 C ATOM 285 CG HIS 27 -0.548 -9.632 -5.607 1.00 4.96 C ATOM 286 CD2 HIS 27 -0.411 -10.940 -5.933 1.00 4.96 C ATOM 287 ND1 HIS 27 0.050 -9.483 -4.373 1.00 4.96 N ATOM 289 CE1 HIS 27 0.526 -10.647 -3.970 1.00 4.96 C ATOM 290 NE2 HIS 27 0.260 -11.548 -4.899 1.00 4.96 N ATOM 292 C HIS 27 -2.582 -6.435 -6.025 1.00 4.96 C ATOM 293 O HIS 27 -1.625 -5.679 -5.803 1.00 4.96 O ATOM 294 CB HIS 27 -1.171 -8.489 -6.353 1.00 4.96 C ATOM 295 N CYS 28 -3.769 -5.976 -6.448 1.00 4.15 N ATOM 297 CA CYS 28 -3.901 -4.566 -6.859 1.00 4.15 C ATOM 298 CB CYS 28 -4.870 -4.431 -8.037 1.00 4.15 C ATOM 299 SG CYS 28 -4.893 -2.806 -8.806 1.00 4.15 S ATOM 300 C CYS 28 -4.313 -3.649 -5.712 1.00 4.15 C ATOM 301 O CYS 28 -5.490 -3.529 -5.361 1.00 4.15 O ATOM 302 N VAL 29 -3.333 -2.821 -5.348 1.00 4.13 N ATOM 304 CA VAL 29 -3.396 -1.861 -4.248 1.00 4.13 C ATOM 305 CB VAL 29 -2.186 -2.142 -3.225 1.00 4.13 C ATOM 306 CG1 VAL 29 -0.827 -2.223 -3.964 1.00 4.13 C ATOM 307 CG2 VAL 29 -2.129 -1.113 -2.083 1.00 4.13 C ATOM 308 C VAL 29 -3.432 -0.416 -4.784 1.00 4.13 C ATOM 309 O VAL 29 -2.611 -0.041 -5.643 1.00 4.13 O ATOM 310 N GLU 30 -4.456 0.332 -4.348 1.00 3.19 N ATOM 312 CA GLU 30 -4.614 1.742 -4.708 1.00 3.19 C ATOM 313 CB GLU 30 -6.049 2.048 -5.152 1.00 3.19 C ATOM 314 CG GLU 30 -6.142 2.896 -6.415 1.00 3.19 C ATOM 315 CD GLU 30 -7.575 3.179 -6.827 1.00 3.19 C ATOM 316 OE1 GLU 30 -8.142 2.380 -7.601 1.00 3.19 O ATOM 317 OE2 GLU 30 -8.133 4.203 -6.378 1.00 3.19 O ATOM 318 C GLU 30 -4.227 2.534 -3.451 1.00 3.19 C ATOM 319 O GLU 30 -4.927 2.521 -2.433 1.00 3.19 O ATOM 320 N VAL 31 -3.091 3.218 -3.558 1.00 2.33 N ATOM 322 CA VAL 31 -2.508 4.040 -2.502 1.00 2.33 C ATOM 323 CB VAL 31 -0.990 3.569 -2.161 1.00 2.33 C ATOM 324 CG1 VAL 31 0.036 3.961 -3.242 1.00 2.33 C ATOM 325 CG2 VAL 31 -0.540 4.026 -0.797 1.00 2.33 C ATOM 326 C VAL 31 -2.628 5.511 -2.963 1.00 2.33 C ATOM 327 O VAL 31 -2.194 5.855 -4.080 1.00 2.33 O ATOM 328 N ARG 32 -3.336 6.328 -2.171 1.00 2.61 N ATOM 330 CA ARG 32 -3.486 7.745 -2.508 1.00 2.61 C ATOM 331 CB ARG 32 -4.951 8.149 -2.683 1.00 2.61 C ATOM 332 CG ARG 32 -5.230 8.752 -4.054 1.00 2.61 C ATOM 333 CD ARG 32 -6.693 9.146 -4.202 1.00 2.61 C ATOM 334 NE ARG 32 -6.977 9.728 -5.515 1.00 2.61 N ATOM 336 CZ ARG 32 -8.171 10.160 -5.921 1.00 2.61 C ATOM 337 NH1 ARG 32 -8.303 10.670 -7.138 1.00 2.61 N ATOM 340 NH2 ARG 32 -9.236 10.091 -5.127 1.00 2.61 N ATOM 343 C ARG 32 -2.751 8.679 -1.548 1.00 2.61 C ATOM 344 O ARG 32 -3.108 8.830 -0.374 1.00 2.61 O ATOM 345 N CYS 33 -1.704 9.288 -2.104 1.00 3.16 N ATOM 347 CA CYS 33 -0.810 10.243 -1.451 1.00 3.16 C ATOM 348 CB CYS 33 0.657 9.879 -1.706 1.00 3.16 C ATOM 349 SG CYS 33 1.134 9.779 -3.441 1.00 3.16 S ATOM 350 C CYS 33 -1.128 11.604 -2.058 1.00 3.16 C ATOM 351 O CYS 33 -1.721 11.688 -3.143 1.00 3.16 O ATOM 352 N SER 34 -0.713 12.658 -1.364 1.00 3.91 N ATOM 354 CA SER 34 -0.959 14.031 -1.785 1.00 3.91 C ATOM 355 CB SER 34 -0.902 14.934 -0.564 1.00 3.91 C ATOM 356 OG SER 34 0.307 14.718 0.132 1.00 3.91 O ATOM 358 C SER 34 -0.070 14.608 -2.898 1.00 3.91 C ATOM 359 O SER 34 -0.437 15.628 -3.489 1.00 3.91 O ATOM 360 N ASP 35 1.040 13.935 -3.240 1.00 4.30 N ATOM 362 CA ASP 35 1.944 14.476 -4.266 1.00 4.30 C ATOM 363 CB ASP 35 3.393 14.443 -3.739 1.00 4.30 C ATOM 364 CG ASP 35 4.363 15.265 -4.580 1.00 4.30 C ATOM 365 OD1 ASP 35 4.965 14.706 -5.522 1.00 4.30 O ATOM 366 OD2 ASP 35 4.537 16.469 -4.288 1.00 4.30 O ATOM 367 C ASP 35 1.867 13.912 -5.697 1.00 4.30 C ATOM 368 O ASP 35 1.255 14.550 -6.556 1.00 4.30 O ATOM 369 N THR 36 2.459 12.736 -5.946 1.00 4.08 N ATOM 371 CA THR 36 2.474 12.123 -7.287 1.00 4.08 C ATOM 372 CB THR 36 3.831 12.412 -8.061 1.00 4.08 C ATOM 373 OG1 THR 36 3.850 11.703 -9.309 1.00 4.08 O ATOM 375 CG2 THR 36 5.067 12.051 -7.234 1.00 4.08 C ATOM 376 C THR 36 2.096 10.641 -7.338 1.00 4.08 C ATOM 377 O THR 36 2.870 9.796 -6.878 1.00 4.08 O ATOM 378 N LYS 37 1.066 10.321 -8.129 1.00 3.90 N ATOM 380 CA LYS 37 0.576 8.944 -8.252 1.00 3.90 C ATOM 381 CB LYS 37 -0.864 8.899 -8.808 1.00 3.90 C ATOM 382 CG LYS 37 -1.125 9.697 -10.089 1.00 3.90 C ATOM 383 CD LYS 37 -2.575 9.573 -10.529 1.00 3.90 C ATOM 384 CE LYS 37 -2.835 10.365 -11.801 1.00 3.90 C ATOM 385 NZ LYS 37 -4.251 10.252 -12.246 1.00 3.90 N ATOM 389 C LYS 37 1.525 8.076 -9.092 1.00 3.90 C ATOM 390 O LYS 37 1.959 8.478 -10.171 1.00 3.90 O ATOM 391 N TYR 38 1.996 7.004 -8.454 1.00 3.61 N ATOM 393 CA TYR 38 2.910 6.020 -9.037 1.00 3.61 C ATOM 394 CB TYR 38 4.269 6.080 -8.299 1.00 3.61 C ATOM 395 CG TYR 38 4.319 5.451 -6.905 1.00 3.61 C ATOM 396 CD1 TYR 38 5.055 4.264 -6.678 1.00 3.61 C ATOM 397 CE1 TYR 38 5.093 3.653 -5.393 1.00 3.61 C ATOM 398 CD2 TYR 38 3.621 6.017 -5.806 1.00 3.61 C ATOM 399 CE2 TYR 38 3.652 5.409 -4.520 1.00 3.61 C ATOM 400 CZ TYR 38 4.389 4.231 -4.326 1.00 3.61 C ATOM 401 OH TYR 38 4.417 3.642 -3.083 1.00 3.61 O ATOM 403 C TYR 38 2.235 4.671 -8.794 1.00 3.61 C ATOM 404 O TYR 38 1.196 4.627 -8.149 1.00 3.61 O ATOM 405 N THR 39 2.836 3.581 -9.273 1.00 2.33 N ATOM 407 CA THR 39 2.295 2.236 -9.063 1.00 2.33 C ATOM 408 CB THR 39 1.917 1.550 -10.407 1.00 2.33 C ATOM 409 OG1 THR 39 3.030 1.599 -11.311 1.00 2.33 O ATOM 411 CG2 THR 39 0.729 2.253 -11.032 1.00 2.33 C ATOM 412 C THR 39 3.327 1.408 -8.282 1.00 2.33 C ATOM 413 O THR 39 4.531 1.652 -8.411 1.00 2.33 O ATOM 414 N LEU 40 2.847 0.504 -7.416 1.00 2.94 N ATOM 416 CA LEU 40 3.699 -0.374 -6.593 1.00 2.94 C ATOM 417 CB LEU 40 3.195 -0.398 -5.136 1.00 2.94 C ATOM 418 CG LEU 40 4.077 -0.826 -3.944 1.00 2.94 C ATOM 419 CD1 LEU 40 4.378 0.366 -3.031 1.00 2.94 C ATOM 420 CD2 LEU 40 3.375 -1.925 -3.152 1.00 2.94 C ATOM 421 C LEU 40 3.690 -1.788 -7.192 1.00 2.94 C ATOM 422 O LEU 40 3.041 -2.012 -8.209 1.00 2.94 O ATOM 423 N CYS 41 4.467 -2.698 -6.587 1.00 4.35 N ATOM 425 CA CYS 41 4.588 -4.101 -7.003 1.00 4.35 C ATOM 426 CB CYS 41 5.957 -4.319 -7.650 1.00 4.35 C ATOM 427 SG CYS 41 6.298 -3.061 -8.897 1.00 4.35 S ATOM 428 C CYS 41 4.409 -5.009 -5.788 1.00 4.35 C ATOM 429 O CYS 41 4.544 -4.489 -4.659 1.00 4.35 O ATOM 430 OXT CYS 41 4.109 -6.209 -5.971 1.00 4.35 O TER END